Query 012882
Match_columns 454
No_of_seqs 412 out of 3032
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2383 Predicted ATPase [Gene 100.0 6.1E-96 1E-100 722.8 25.9 350 40-444 111-461 (467)
2 PF03969 AFG1_ATPase: AFG1-lik 100.0 5.8E-83 1.2E-87 647.9 27.2 312 29-444 49-360 (362)
3 COG1485 Predicted ATPase [Gene 100.0 6.7E-82 1.5E-86 619.1 24.7 301 40-443 62-362 (367)
4 COG1131 CcmA ABC-type multidru 99.8 1.3E-20 2.8E-25 187.6 8.3 159 40-205 28-205 (293)
5 COG4152 ABC-type uncharacteriz 99.8 3E-20 6.6E-25 175.0 9.7 185 39-236 24-219 (300)
6 COG4555 NatA ABC-type Na+ tran 99.8 1.1E-19 2.4E-24 166.8 9.3 178 40-234 25-220 (245)
7 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1.4E-19 3E-24 174.1 8.3 151 41-198 28-200 (254)
8 COG1120 FepC ABC-type cobalami 99.8 2.9E-19 6.3E-24 172.7 8.0 158 40-206 25-208 (258)
9 PRK13537 nodulation ABC transp 99.8 4.4E-19 9.4E-24 177.8 7.5 160 40-206 30-207 (306)
10 COG2884 FtsE Predicted ATPase 99.8 2.1E-18 4.5E-23 157.3 10.7 151 40-197 25-197 (223)
11 COG1125 OpuBA ABC-type proline 99.8 2.3E-18 4.9E-23 163.4 10.5 157 40-201 24-200 (309)
12 COG1126 GlnQ ABC-type polar am 99.8 2E-18 4.3E-23 160.5 9.4 151 40-197 25-196 (240)
13 COG4586 ABC-type uncharacteriz 99.8 3.8E-18 8.3E-23 163.2 11.5 188 3-197 9-217 (325)
14 TIGR01188 drrA daunorubicin re 99.8 1.6E-18 3.5E-23 173.3 8.5 151 40-197 16-184 (302)
15 COG1127 Ttg2A ABC-type transpo 99.7 3.6E-18 7.8E-23 161.1 9.3 156 40-198 31-207 (263)
16 PRK13536 nodulation factor exp 99.7 2.4E-18 5.3E-23 174.7 7.3 152 40-198 64-233 (340)
17 cd03226 ABC_cobalt_CbiO_domain 99.7 6.7E-18 1.4E-22 159.3 8.8 148 41-197 24-186 (205)
18 TIGR00960 3a0501s02 Type II (G 99.7 1.4E-17 3E-22 158.3 10.4 149 40-197 26-198 (216)
19 COG1116 TauB ABC-type nitrate/ 99.7 3.6E-18 7.8E-23 162.7 6.2 151 40-198 26-192 (248)
20 cd03268 ABC_BcrA_bacitracin_re 99.7 1.7E-17 3.7E-22 156.8 10.6 149 40-197 23-186 (208)
21 TIGR03522 GldA_ABC_ATP gliding 99.7 8.8E-18 1.9E-22 168.0 7.6 151 40-198 25-193 (301)
22 cd03225 ABC_cobalt_CbiO_domain 99.7 1.8E-17 4E-22 156.8 9.3 149 40-197 24-194 (211)
23 cd03266 ABC_NatA_sodium_export 99.7 2.7E-17 5.9E-22 156.4 10.3 148 41-197 29-196 (218)
24 cd03269 ABC_putative_ATPase Th 99.7 4E-17 8.7E-22 154.5 11.2 149 40-197 23-188 (210)
25 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 3.3E-17 7.1E-22 155.9 10.3 149 40-197 27-201 (218)
26 cd03265 ABC_DrrA DrrA is the A 99.7 2.4E-17 5.2E-22 157.2 8.7 149 40-197 23-192 (220)
27 COG1136 SalX ABC-type antimicr 99.7 5.7E-17 1.2E-21 153.9 10.8 152 40-197 28-203 (226)
28 COG1117 PstB ABC-type phosphat 99.7 7.7E-17 1.7E-21 149.6 11.1 157 39-197 29-208 (253)
29 TIGR02673 FtsE cell division A 99.7 4.6E-17 1E-21 154.4 9.9 149 40-197 25-197 (214)
30 cd03292 ABC_FtsE_transporter F 99.7 6.1E-17 1.3E-21 153.5 10.5 148 41-197 25-196 (214)
31 cd03235 ABC_Metallic_Cations A 99.7 3.3E-17 7.3E-22 155.3 8.7 149 40-197 22-192 (213)
32 TIGR01288 nodI ATP-binding ABC 99.7 3.3E-17 7.1E-22 164.0 9.1 151 40-197 27-195 (303)
33 TIGR01166 cbiO cobalt transpor 99.7 7.4E-17 1.6E-21 150.4 10.9 150 40-198 15-188 (190)
34 PRK13538 cytochrome c biogenes 99.7 7.7E-17 1.7E-21 152.1 10.6 154 40-202 24-194 (204)
35 cd03259 ABC_Carb_Solutes_like 99.7 3.6E-17 7.9E-22 155.1 8.2 149 40-197 23-191 (213)
36 cd03261 ABC_Org_Solvent_Resist 99.7 3.6E-17 7.8E-22 157.5 8.3 149 40-197 23-197 (235)
37 cd03262 ABC_HisP_GlnQ_permease 99.7 8.1E-17 1.8E-21 152.5 10.1 151 40-197 23-195 (213)
38 cd03256 ABC_PhnC_transporter A 99.7 5.6E-17 1.2E-21 156.5 8.7 149 40-197 24-205 (241)
39 PRK09536 btuD corrinoid ABC tr 99.7 2.8E-17 6.1E-22 170.0 7.1 152 40-198 26-200 (402)
40 cd03219 ABC_Mj1267_LivG_branch 99.7 6.5E-17 1.4E-21 155.7 9.1 149 40-197 23-203 (236)
41 TIGR03740 galliderm_ABC gallid 99.7 5.6E-17 1.2E-21 155.0 8.5 148 41-197 24-184 (223)
42 TIGR02315 ABC_phnC phosphonate 99.7 8.2E-17 1.8E-21 155.7 9.4 149 40-197 25-206 (243)
43 cd03293 ABC_NrtD_SsuB_transpor 99.7 3.5E-17 7.5E-22 156.1 6.7 149 40-197 27-192 (220)
44 PRK10908 cell division protein 99.7 1.2E-16 2.6E-21 152.6 10.1 149 40-197 25-197 (222)
45 TIGR03608 L_ocin_972_ABC putat 99.7 1.4E-16 3.1E-21 150.1 10.3 148 41-197 22-194 (206)
46 TIGR01189 ccmA heme ABC export 99.7 1.6E-16 3.4E-21 149.2 10.5 155 40-205 23-193 (198)
47 cd03258 ABC_MetN_methionine_tr 99.7 1.5E-16 3.3E-21 152.9 10.5 149 40-197 28-201 (233)
48 COG1137 YhbG ABC-type (unclass 99.7 1.6E-17 3.6E-22 152.5 3.3 150 39-197 26-199 (243)
49 cd03218 ABC_YhbG The ABC trans 99.7 1.2E-16 2.6E-21 153.4 9.4 149 40-197 23-193 (232)
50 PRK11650 ugpC glycerol-3-phosp 99.7 5.1E-17 1.1E-21 166.0 7.2 148 41-197 28-195 (356)
51 PRK13540 cytochrome c biogenes 99.7 2.6E-16 5.6E-21 148.0 11.5 150 40-199 24-189 (200)
52 PRK13539 cytochrome c biogenes 99.7 2.1E-16 4.5E-21 149.5 10.8 149 40-197 25-187 (207)
53 cd03231 ABC_CcmA_heme_exporter 99.7 2.2E-16 4.8E-21 148.7 10.8 150 40-198 23-186 (201)
54 TIGR02314 ABC_MetN D-methionin 99.7 4.9E-17 1.1E-21 165.1 6.7 151 40-197 28-201 (343)
55 PRK11629 lolD lipoprotein tran 99.7 1.8E-16 3.9E-21 152.6 10.3 149 40-197 32-206 (233)
56 PRK09493 glnQ glutamine ABC tr 99.7 8.8E-17 1.9E-21 155.3 8.1 149 40-197 24-196 (240)
57 COG3839 MalK ABC-type sugar tr 99.7 3.9E-17 8.4E-22 163.7 5.5 174 41-233 27-220 (338)
58 cd03267 ABC_NatA_like Similar 99.7 7.3E-17 1.6E-21 155.7 7.3 150 39-197 43-214 (236)
59 TIGR03265 PhnT2 putative 2-ami 99.7 4.5E-17 9.8E-22 166.2 5.9 148 41-197 28-195 (353)
60 cd03224 ABC_TM1139_LivF_branch 99.7 1.6E-16 3.5E-21 151.4 9.3 149 40-197 23-192 (222)
61 COG1118 CysA ABC-type sulfate/ 99.7 1E-16 2.2E-21 155.9 7.7 150 39-197 24-198 (345)
62 PRK13541 cytochrome c biogenes 99.7 3.3E-16 7.1E-21 146.7 10.8 149 40-198 23-184 (195)
63 PRK13651 cobalt transporter AT 99.7 1.9E-16 4.2E-21 158.6 9.8 151 41-197 31-225 (305)
64 TIGR02211 LolD_lipo_ex lipopro 99.7 3E-16 6.6E-21 149.5 10.7 149 40-197 28-202 (221)
65 PRK13647 cbiO cobalt transport 99.7 1.9E-16 4.1E-21 156.3 9.6 149 40-197 28-198 (274)
66 cd03264 ABC_drug_resistance_li 99.7 1.7E-16 3.6E-21 150.4 8.6 146 42-197 25-189 (211)
67 PRK11144 modC molybdate transp 99.7 6.5E-17 1.4E-21 165.1 6.2 146 41-197 22-189 (352)
68 cd03237 ABC_RNaseL_inhibitor_d 99.7 1.9E-16 4E-21 154.0 9.1 142 41-197 23-176 (246)
69 COG1124 DppF ABC-type dipeptid 99.7 1.9E-16 4.1E-21 149.9 8.8 153 39-197 29-202 (252)
70 cd03301 ABC_MalK_N The N-termi 99.7 1.2E-16 2.5E-21 151.6 7.3 149 40-197 23-191 (213)
71 PRK11153 metN DL-methionine tr 99.7 1.4E-16 3E-21 162.2 8.3 149 40-197 28-201 (343)
72 cd03295 ABC_OpuCA_Osmoprotecti 99.7 3E-16 6.5E-21 151.8 10.2 151 40-197 24-196 (242)
73 PRK11264 putative amino-acid A 99.7 1.8E-16 3.9E-21 154.0 8.4 149 40-197 26-204 (250)
74 cd03297 ABC_ModC_molybdenum_tr 99.7 1.9E-16 4.2E-21 150.3 8.5 147 41-197 22-192 (214)
75 cd03263 ABC_subfamily_A The AB 99.7 3E-16 6.5E-21 149.4 9.8 151 40-197 25-192 (220)
76 PRK11247 ssuB aliphatic sulfon 99.7 2.4E-16 5.3E-21 154.2 9.3 147 40-197 35-194 (257)
77 PRK09452 potA putrescine/sperm 99.7 8.9E-17 1.9E-21 165.1 6.5 149 40-197 37-205 (375)
78 PRK11432 fbpC ferric transport 99.7 9.3E-17 2E-21 163.7 6.6 149 40-197 29-197 (351)
79 TIGR03258 PhnT 2-aminoethylpho 99.7 7E-17 1.5E-21 165.2 5.7 151 41-198 29-200 (362)
80 cd03296 ABC_CysA_sulfate_impor 99.7 1.7E-16 3.7E-21 153.3 8.0 149 40-197 25-197 (239)
81 PRK11124 artP arginine transpo 99.7 3E-16 6.6E-21 151.7 9.7 149 40-197 25-201 (242)
82 PRK13641 cbiO cobalt transport 99.7 1.8E-16 3.9E-21 157.5 8.2 150 40-197 30-205 (287)
83 TIGR03410 urea_trans_UrtE urea 99.7 4.7E-16 1E-20 149.2 10.8 150 40-197 23-192 (230)
84 PRK10895 lipopolysaccharide AB 99.7 4.3E-16 9.4E-21 150.6 10.5 149 40-197 26-197 (241)
85 PRK10619 histidine/lysine/argi 99.7 1.5E-16 3.3E-21 155.3 7.3 150 40-197 28-212 (257)
86 cd03260 ABC_PstB_phosphate_tra 99.7 2.2E-16 4.9E-21 151.1 8.3 149 40-197 23-200 (227)
87 PRK13644 cbiO cobalt transport 99.7 3.6E-16 7.9E-21 154.3 9.9 151 40-197 25-196 (274)
88 cd03298 ABC_ThiQ_thiamine_tran 99.6 2.1E-16 4.5E-21 149.7 7.9 148 41-197 22-189 (211)
89 PRK13636 cbiO cobalt transport 99.6 2.6E-16 5.5E-21 156.1 8.9 151 40-197 29-202 (283)
90 COG3842 PotA ABC-type spermidi 99.6 1.9E-16 4.1E-21 159.5 8.0 174 41-233 29-223 (352)
91 cd03257 ABC_NikE_OppD_transpor 99.6 3.2E-16 7E-21 149.9 9.0 150 40-197 28-206 (228)
92 PRK11248 tauB taurine transpor 99.6 1.8E-16 4E-21 154.8 7.4 149 40-197 24-189 (255)
93 TIGR01277 thiQ thiamine ABC tr 99.6 2.1E-16 4.5E-21 150.1 7.5 149 40-197 21-189 (213)
94 TIGR01186 proV glycine betaine 99.6 2.2E-16 4.7E-21 161.4 8.0 149 40-197 16-190 (363)
95 PRK13652 cbiO cobalt transport 99.6 1.5E-16 3.2E-21 157.3 6.6 149 40-197 27-198 (277)
96 PRK13635 cbiO cobalt transport 99.6 5.4E-16 1.2E-20 153.5 10.5 151 40-197 30-201 (279)
97 COG3845 ABC-type uncharacteriz 99.6 8.2E-16 1.8E-20 157.9 12.1 166 41-229 28-216 (501)
98 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 5.2E-16 1.1E-20 149.7 10.1 149 40-197 24-193 (236)
99 PRK14250 phosphate ABC transpo 99.6 3.4E-16 7.5E-21 151.5 9.0 150 40-197 26-192 (241)
100 PRK13649 cbiO cobalt transport 99.6 3.1E-16 6.8E-21 155.1 8.8 149 41-197 31-205 (280)
101 TIGR02142 modC_ABC molybdenum 99.6 2E-16 4.3E-21 161.7 7.5 148 41-197 21-192 (354)
102 PRK10584 putative ABC transpor 99.6 5.9E-16 1.3E-20 148.3 10.2 149 40-197 33-207 (228)
103 COG1129 MglA ABC-type sugar tr 99.6 1.1E-15 2.3E-20 159.5 12.8 151 40-197 31-205 (500)
104 PRK10851 sulfate/thiosulfate t 99.6 1.7E-16 3.6E-21 162.0 6.6 148 41-197 26-197 (353)
105 COG0410 LivF ABC-type branched 99.6 7.2E-16 1.6E-20 145.0 10.2 150 40-197 26-197 (237)
106 PRK13637 cbiO cobalt transport 99.6 3.1E-16 6.7E-21 155.8 8.2 153 40-197 30-205 (287)
107 PRK13639 cbiO cobalt transport 99.6 4.7E-16 1E-20 153.5 9.3 149 40-197 25-197 (275)
108 PRK10771 thiQ thiamine transpo 99.6 2.5E-16 5.5E-21 151.4 7.2 148 41-197 23-190 (232)
109 PRK11614 livF leucine/isoleuci 99.6 6.6E-16 1.4E-20 148.9 10.1 149 40-197 28-197 (237)
110 PRK13643 cbiO cobalt transport 99.6 2.4E-16 5.2E-21 156.7 7.2 150 40-197 29-204 (288)
111 PRK09984 phosphonate/organopho 99.6 6.6E-16 1.4E-20 151.3 10.2 152 40-197 27-213 (262)
112 PRK13634 cbiO cobalt transport 99.6 3.4E-16 7.4E-21 155.7 8.3 152 40-197 30-206 (290)
113 PRK13633 cobalt transporter AT 99.6 3.3E-16 7.2E-21 155.0 8.0 152 40-198 33-206 (280)
114 PRK11000 maltose/maltodextrin 99.6 3E-16 6.4E-21 161.2 7.9 148 41-197 27-194 (369)
115 TIGR01184 ntrCD nitrate transp 99.6 3.5E-16 7.6E-21 150.4 7.8 148 41-197 9-175 (230)
116 PRK13650 cbiO cobalt transport 99.6 8.4E-16 1.8E-20 152.1 10.6 149 40-197 30-201 (279)
117 PRK13638 cbiO cobalt transport 99.6 5.5E-16 1.2E-20 152.7 9.2 149 40-197 24-196 (271)
118 PRK11831 putative ABC transpor 99.6 3.7E-16 8.1E-21 153.7 8.0 149 40-197 30-204 (269)
119 cd03294 ABC_Pro_Gly_Bertaine T 99.6 3E-16 6.5E-21 154.5 7.3 150 39-197 46-221 (269)
120 PRK13543 cytochrome c biogenes 99.6 6.8E-16 1.5E-20 146.7 9.5 151 39-198 33-198 (214)
121 COG0411 LivG ABC-type branched 99.6 3.6E-16 7.9E-21 148.1 7.2 149 40-197 27-210 (250)
122 PRK15439 autoinducer 2 ABC tra 99.6 3.5E-16 7.7E-21 167.3 7.9 150 40-198 34-201 (510)
123 PRK11231 fecE iron-dicitrate t 99.6 6.6E-16 1.4E-20 150.7 9.1 151 40-197 25-198 (255)
124 PRK13646 cbiO cobalt transport 99.6 6.4E-16 1.4E-20 153.5 8.8 150 40-197 30-206 (286)
125 PRK10575 iron-hydroxamate tran 99.6 5.8E-16 1.2E-20 152.0 8.3 150 39-197 33-208 (265)
126 PRK11607 potG putrescine trans 99.6 2.4E-16 5.2E-21 162.1 5.8 149 40-197 42-210 (377)
127 PRK13548 hmuV hemin importer A 99.6 8E-16 1.7E-20 150.5 9.2 149 40-197 25-201 (258)
128 cd03229 ABC_Class3 This class 99.6 6.5E-16 1.4E-20 142.7 8.1 128 40-197 23-161 (178)
129 PRK13632 cbiO cobalt transport 99.6 7.1E-16 1.5E-20 151.9 8.8 149 40-197 32-203 (271)
130 COG1119 ModF ABC-type molybden 99.6 2.2E-15 4.8E-20 142.9 11.6 158 33-197 47-233 (257)
131 TIGR03005 ectoine_ehuA ectoine 99.6 6.4E-16 1.4E-20 150.5 8.2 149 40-197 23-207 (252)
132 cd03234 ABCG_White The White s 99.6 9.6E-16 2.1E-20 146.8 9.2 152 40-197 30-203 (226)
133 PRK10253 iron-enterobactin tra 99.6 6.9E-16 1.5E-20 151.5 8.4 149 40-197 30-204 (265)
134 PRK11300 livG leucine/isoleuci 99.6 7.5E-16 1.6E-20 150.1 8.5 149 40-197 28-214 (255)
135 PRK13631 cbiO cobalt transport 99.6 5.9E-16 1.3E-20 156.1 8.0 152 40-197 49-236 (320)
136 cd03230 ABC_DR_subfamily_A Thi 99.6 7.6E-16 1.6E-20 141.6 8.0 125 41-197 24-155 (173)
137 TIGR01257 rim_protein retinal- 99.6 4.4E-16 9.5E-21 185.1 8.1 180 40-236 1962-2159(2272)
138 TIGR02324 CP_lyasePhnL phospho 99.6 1.2E-15 2.6E-20 145.8 9.6 150 40-197 31-209 (224)
139 TIGR03411 urea_trans_UrtD urea 99.6 6.9E-16 1.5E-20 149.2 7.9 149 40-197 25-202 (242)
140 cd03215 ABC_Carb_Monos_II This 99.6 1.2E-15 2.6E-20 141.5 9.1 131 40-197 23-164 (182)
141 TIGR01978 sufC FeS assembly AT 99.6 4.1E-16 8.8E-21 150.7 6.2 152 40-197 23-204 (243)
142 PRK10247 putative ABC transpor 99.6 1.3E-15 2.8E-20 145.9 9.6 153 39-197 29-198 (225)
143 TIGR03873 F420-0_ABC_ATP propo 99.6 8.7E-16 1.9E-20 149.9 8.4 149 40-197 24-197 (256)
144 PRK13640 cbiO cobalt transport 99.6 1.6E-15 3.6E-20 150.2 10.2 152 40-198 30-205 (282)
145 TIGR02982 heterocyst_DevA ABC 99.6 2.3E-15 5E-20 143.6 10.8 151 40-197 28-202 (220)
146 PRK13645 cbiO cobalt transport 99.6 7.4E-16 1.6E-20 153.2 7.7 151 41-197 35-211 (289)
147 PRK10070 glycine betaine trans 99.6 8.6E-16 1.9E-20 158.9 8.4 149 40-197 51-225 (400)
148 COG1122 CbiO ABC-type cobalt t 99.6 2.7E-15 5.8E-20 144.4 11.1 151 40-197 27-199 (235)
149 PRK13546 teichoic acids export 99.6 8.9E-16 1.9E-20 150.8 8.0 143 39-197 46-203 (264)
150 cd03300 ABC_PotA_N PotA is an 99.6 1.3E-15 2.7E-20 146.6 8.9 149 40-197 23-191 (232)
151 TIGR02769 nickel_nikE nickel i 99.6 1.4E-15 2.9E-20 149.4 9.2 150 40-197 34-211 (265)
152 TIGR03771 anch_rpt_ABC anchore 99.6 1.8E-15 3.9E-20 144.8 9.8 148 41-197 4-173 (223)
153 cd03251 ABCC_MsbA MsbA is an e 99.6 1.2E-15 2.7E-20 146.6 8.6 152 40-197 25-197 (234)
154 PRK13648 cbiO cobalt transport 99.6 1.9E-15 4.1E-20 148.7 10.0 149 40-197 32-203 (269)
155 PRK09700 D-allose transporter 99.6 9.9E-16 2.1E-20 163.9 8.5 150 40-197 286-469 (510)
156 TIGR00972 3a0107s01c2 phosphat 99.6 1.1E-15 2.5E-20 148.2 8.2 155 40-197 24-203 (247)
157 PRK13549 xylose transporter AT 99.6 1.3E-15 2.8E-20 162.8 9.4 154 40-200 28-206 (506)
158 cd03252 ABCC_Hemolysin The ABC 99.6 3E-15 6.5E-20 144.3 10.9 151 41-197 26-197 (237)
159 cd03254 ABCC_Glucan_exporter_l 99.6 3.3E-15 7.2E-20 143.1 11.2 152 40-197 26-198 (229)
160 PRK15079 oligopeptide ABC tran 99.6 6.2E-16 1.3E-20 156.6 6.3 150 40-197 44-222 (331)
161 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 2.6E-15 5.7E-20 144.8 10.3 152 40-197 26-198 (238)
162 cd03245 ABCC_bacteriocin_expor 99.6 4.3E-15 9.2E-20 141.5 11.3 153 40-197 27-199 (220)
163 COG1135 AbcC ABC-type metal io 99.6 4E-15 8.7E-20 145.1 11.2 151 40-197 29-202 (339)
164 TIGR02770 nickel_nikD nickel i 99.6 1.6E-15 3.4E-20 145.8 8.3 155 40-197 9-186 (230)
165 cd03246 ABCC_Protease_Secretio 99.6 4E-15 8.7E-20 136.8 10.6 123 41-197 26-156 (173)
166 PRK15112 antimicrobial peptide 99.6 1.8E-15 4E-20 148.7 8.9 152 40-197 36-210 (267)
167 PRK10762 D-ribose transporter 99.6 1.5E-15 3.3E-20 162.0 9.0 151 40-199 27-203 (501)
168 TIGR00968 3a0106s01 sulfate AB 99.6 2E-15 4.4E-20 145.7 8.9 149 40-197 23-191 (237)
169 TIGR01187 potA spermidine/putr 99.6 3.8E-16 8.2E-21 157.9 3.9 141 48-197 1-161 (325)
170 cd03214 ABC_Iron-Siderophores_ 99.6 5.5E-15 1.2E-19 136.8 11.3 121 40-197 22-158 (180)
171 PRK15056 manganese/iron transp 99.6 1.2E-15 2.6E-20 150.3 7.4 149 40-197 30-202 (272)
172 cd03244 ABCC_MRP_domain2 Domai 99.6 4E-15 8.7E-20 141.8 10.7 152 40-197 27-198 (221)
173 PRK14259 phosphate ABC transpo 99.6 2.1E-15 4.6E-20 148.4 9.0 156 39-197 35-213 (269)
174 PRK03695 vitamin B12-transport 99.6 2.5E-15 5.4E-20 146.2 9.2 148 40-197 19-193 (248)
175 TIGR03415 ABC_choXWV_ATP choli 99.6 1.2E-15 2.5E-20 156.9 7.2 149 40-197 47-225 (382)
176 PRK13642 cbiO cobalt transport 99.6 3E-15 6.4E-20 148.0 9.6 150 40-198 30-202 (277)
177 PRK14273 phosphate ABC transpo 99.6 2.4E-15 5.2E-20 146.6 8.8 156 39-197 29-209 (254)
178 COG4559 ABC-type hemin transpo 99.6 1.4E-14 3E-19 134.5 13.1 181 39-233 23-227 (259)
179 cd03253 ABCC_ATM1_transporter 99.6 6.4E-15 1.4E-19 141.8 11.3 152 40-197 24-196 (236)
180 PRK09544 znuC high-affinity zi 99.6 4.3E-15 9.3E-20 144.9 10.2 141 40-197 27-181 (251)
181 PRK10982 galactose/methyl gala 99.6 3.9E-15 8.4E-20 158.6 10.3 149 41-198 22-195 (491)
182 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 5.4E-15 1.2E-19 141.6 10.3 146 39-197 44-202 (224)
183 PRK13549 xylose transporter AT 99.6 2.6E-15 5.5E-20 160.6 8.9 151 40-197 285-465 (506)
184 PRK11288 araG L-arabinose tran 99.6 2.4E-15 5.2E-20 160.6 8.7 150 40-197 276-456 (501)
185 PRK10938 putative molybdenum t 99.6 4E-15 8.6E-20 158.4 10.3 148 40-198 26-196 (490)
186 PRK11701 phnK phosphonate C-P 99.6 2.9E-15 6.3E-20 146.4 8.4 152 40-197 29-212 (258)
187 TIGR02633 xylG D-xylose ABC tr 99.6 2.7E-15 5.8E-20 160.1 8.8 151 40-197 283-463 (500)
188 PRK09700 D-allose transporter 99.6 2E-15 4.4E-20 161.4 7.7 150 40-198 28-206 (510)
189 PRK14268 phosphate ABC transpo 99.6 3.8E-15 8.3E-20 145.6 8.8 154 40-197 35-213 (258)
190 PRK14256 phosphate ABC transpo 99.6 2.6E-15 5.6E-20 146.2 7.3 156 40-197 27-207 (252)
191 PRK14267 phosphate ABC transpo 99.6 4.5E-15 9.9E-20 144.5 9.0 156 40-197 27-208 (253)
192 PRK14241 phosphate transporter 99.6 3.6E-15 7.8E-20 145.8 8.0 156 40-197 27-207 (258)
193 cd03232 ABC_PDR_domain2 The pl 99.6 2.1E-14 4.5E-19 134.3 12.8 127 41-197 31-168 (192)
194 cd03299 ABC_ModC_like Archeal 99.6 4.6E-15 9.9E-20 143.1 8.6 150 41-197 23-190 (235)
195 PRK11288 araG L-arabinose tran 99.6 4.8E-15 1E-19 158.3 9.6 151 40-199 27-202 (501)
196 cd03248 ABCC_TAP TAP, the Tran 99.6 6.3E-15 1.4E-19 141.0 9.4 151 40-197 37-209 (226)
197 TIGR02633 xylG D-xylose ABC tr 99.6 4.4E-15 9.5E-20 158.5 9.2 152 41-198 25-202 (500)
198 PRK13547 hmuV hemin importer A 99.6 6E-15 1.3E-19 145.5 9.4 152 40-197 24-215 (272)
199 COG4988 CydD ABC-type transpor 99.6 1.6E-14 3.6E-19 151.3 13.1 170 40-231 344-530 (559)
200 TIGR01257 rim_protein retinal- 99.6 2.4E-15 5.3E-20 178.9 7.8 159 40-206 953-1129(2272)
201 cd03247 ABCC_cytochrome_bd The 99.6 8.2E-15 1.8E-19 135.3 9.7 126 40-197 25-157 (178)
202 PRK14247 phosphate ABC transpo 99.6 4.9E-15 1.1E-19 144.0 8.6 155 40-197 26-205 (250)
203 PRK15093 antimicrobial peptide 99.6 3.7E-15 8.1E-20 150.9 8.1 155 40-197 30-219 (330)
204 TIGR03269 met_CoM_red_A2 methy 99.6 5.3E-15 1.1E-19 158.6 9.6 154 40-200 23-232 (520)
205 PRK10762 D-ribose transporter 99.6 4.3E-15 9.3E-20 158.6 8.8 150 40-197 275-455 (501)
206 PRK14274 phosphate ABC transpo 99.6 5.2E-15 1.1E-19 144.7 8.7 155 40-197 35-214 (259)
207 PRK10744 pstB phosphate transp 99.6 6E-15 1.3E-19 144.4 9.1 157 39-197 35-215 (260)
208 TIGR02323 CP_lyasePhnK phospho 99.6 6.3E-15 1.4E-19 143.5 9.1 150 40-197 26-209 (253)
209 cd03228 ABCC_MRP_Like The MRP 99.6 9.8E-15 2.1E-19 134.0 9.7 123 40-197 25-155 (171)
210 cd03213 ABCG_EPDR ABCG transpo 99.6 1.9E-14 4.1E-19 134.9 11.8 133 40-197 32-171 (194)
211 PRK11308 dppF dipeptide transp 99.6 5.3E-15 1.2E-19 149.6 8.3 150 40-197 38-215 (327)
212 COG4674 Uncharacterized ABC-ty 99.6 8.5E-15 1.9E-19 134.2 8.8 165 41-230 29-223 (249)
213 COG4133 CcmA ABC-type transpor 99.6 3.4E-14 7.4E-19 129.7 12.6 153 38-198 23-191 (209)
214 PRK14253 phosphate ABC transpo 99.6 1.2E-14 2.5E-19 141.3 10.2 157 39-197 25-204 (249)
215 PRK14270 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 141.6 10.1 156 40-197 27-206 (251)
216 PRK15439 autoinducer 2 ABC tra 99.6 4.2E-15 9.2E-20 159.0 7.8 150 40-197 286-463 (510)
217 PRK14242 phosphate transporter 99.6 8E-15 1.7E-19 142.8 9.0 154 40-197 29-208 (253)
218 COG3638 ABC-type phosphate/pho 99.6 1.3E-14 2.9E-19 136.7 10.1 149 40-197 27-208 (258)
219 PRK10418 nikD nickel transport 99.6 4.9E-15 1.1E-19 144.5 7.5 155 40-197 26-201 (254)
220 PRK10419 nikE nickel transport 99.6 4.5E-15 9.7E-20 146.1 7.2 150 40-197 35-212 (268)
221 PRK14265 phosphate ABC transpo 99.6 6.7E-15 1.5E-19 145.3 8.5 156 39-197 42-220 (274)
222 PLN03211 ABC transporter G-25; 99.6 5.3E-15 1.2E-19 162.3 8.5 156 40-197 91-266 (659)
223 PRK14272 phosphate ABC transpo 99.6 7E-15 1.5E-19 143.0 8.3 156 40-197 27-207 (252)
224 PRK14269 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 141.4 9.6 154 41-197 26-201 (246)
225 PRK09473 oppD oligopeptide tra 99.6 5.2E-15 1.1E-19 149.9 7.5 155 40-197 39-222 (330)
226 PRK14240 phosphate transporter 99.6 9.2E-15 2E-19 142.1 8.9 154 40-197 26-205 (250)
227 PRK11176 lipid transporter ATP 99.6 1.3E-14 2.8E-19 157.6 11.0 154 40-197 366-539 (582)
228 TIGR03269 met_CoM_red_A2 methy 99.6 8E-15 1.7E-19 157.2 9.2 156 40-197 307-488 (520)
229 PRK14263 phosphate ABC transpo 99.6 8.6E-15 1.9E-19 143.5 8.6 155 40-197 31-208 (261)
230 cd03290 ABCC_SUR1_N The SUR do 99.6 1.3E-14 2.8E-19 138.1 9.6 152 40-197 24-202 (218)
231 PRK13545 tagH teichoic acids e 99.6 5.6E-15 1.2E-19 155.7 7.7 145 40-198 47-204 (549)
232 PRK14271 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 143.9 9.4 155 40-197 44-222 (276)
233 PRK14262 phosphate ABC transpo 99.5 9.8E-15 2.1E-19 141.9 8.7 155 40-197 26-205 (250)
234 PRK14235 phosphate transporter 99.5 9.6E-15 2.1E-19 143.6 8.7 155 40-197 42-222 (267)
235 PRK11022 dppD dipeptide transp 99.5 8.1E-15 1.8E-19 148.2 8.2 156 40-198 30-215 (326)
236 PRK14243 phosphate transporter 99.5 1.3E-14 2.8E-19 142.4 9.4 156 39-197 32-210 (264)
237 PRK10790 putative multidrug tr 99.5 1.5E-14 3.1E-19 157.6 10.6 152 40-197 364-535 (592)
238 PRK13409 putative ATPase RIL; 99.5 8.6E-15 1.9E-19 158.8 8.7 140 41-197 363-514 (590)
239 PRK14254 phosphate ABC transpo 99.5 9E-15 2E-19 145.2 8.1 156 39-197 61-239 (285)
240 cd03250 ABCC_MRP_domain1 Domai 99.5 1.4E-14 3E-19 136.5 8.9 145 40-197 28-188 (204)
241 PRK14246 phosphate ABC transpo 99.5 1E-14 2.2E-19 142.7 8.2 155 40-197 33-212 (257)
242 COG3840 ThiQ ABC-type thiamine 99.5 2.4E-14 5.2E-19 130.0 9.8 153 40-201 22-192 (231)
243 PRK14260 phosphate ABC transpo 99.5 6.7E-15 1.5E-19 144.0 6.7 155 40-197 30-209 (259)
244 cd03217 ABC_FeS_Assembly ABC-t 99.5 1.7E-14 3.6E-19 135.9 9.1 124 40-197 23-164 (200)
245 COG1123 ATPase components of v 99.5 7.3E-15 1.6E-19 154.4 7.2 152 39-198 313-491 (539)
246 PRK14249 phosphate ABC transpo 99.5 1E-14 2.2E-19 141.9 7.8 154 40-197 27-206 (251)
247 PRK14248 phosphate ABC transpo 99.5 8E-15 1.7E-19 144.1 7.2 155 40-197 44-223 (268)
248 PRK14239 phosphate transporter 99.5 1.4E-14 3.1E-19 140.8 8.8 156 40-197 28-207 (252)
249 PRK10261 glutathione transport 99.5 8.9E-15 1.9E-19 160.1 8.2 150 40-197 347-524 (623)
250 PRK14237 phosphate transporter 99.5 9.2E-15 2E-19 143.7 7.5 154 40-197 43-222 (267)
251 PRK14236 phosphate transporter 99.5 1.6E-14 3.4E-19 142.4 9.0 155 40-197 48-227 (272)
252 PRK14261 phosphate ABC transpo 99.5 3.4E-14 7.4E-19 138.4 11.2 155 40-197 29-208 (253)
253 PRK14245 phosphate ABC transpo 99.5 1.8E-14 4E-19 140.0 9.3 154 40-197 26-205 (250)
254 PRK14244 phosphate ABC transpo 99.5 2.7E-14 5.8E-19 139.0 10.2 154 40-197 28-208 (251)
255 PRK14251 phosphate ABC transpo 99.5 3.4E-14 7.3E-19 138.2 10.9 156 40-197 27-206 (251)
256 cd03233 ABC_PDR_domain1 The pl 99.5 1.6E-14 3.5E-19 136.2 8.3 135 40-197 30-179 (202)
257 PRK10261 glutathione transport 99.5 7.8E-15 1.7E-19 160.5 7.1 154 40-199 39-231 (623)
258 cd03216 ABC_Carb_Monos_I This 99.5 3.5E-14 7.6E-19 129.4 10.2 118 40-197 23-142 (163)
259 PRK15134 microcin C ABC transp 99.5 8.5E-15 1.8E-19 157.4 7.0 152 39-197 308-486 (529)
260 cd03289 ABCC_CFTR2 The CFTR su 99.5 2.5E-14 5.3E-19 141.3 9.7 152 40-197 27-197 (275)
261 KOG0059 Lipid exporter ABCA1 a 99.5 1.9E-14 4E-19 162.8 10.1 180 39-235 587-786 (885)
262 PRK14258 phosphate ABC transpo 99.5 1.6E-14 3.4E-19 141.6 8.2 155 40-197 30-211 (261)
263 PRK14264 phosphate ABC transpo 99.5 1.4E-14 3.1E-19 145.1 7.9 156 40-197 68-259 (305)
264 cd03222 ABC_RNaseL_inhibitor T 99.5 2.8E-14 6.1E-19 131.9 9.1 107 41-197 23-132 (177)
265 PRK11147 ABC transporter ATPas 99.5 1.6E-14 3.5E-19 158.4 8.9 143 40-197 342-497 (635)
266 PRK14255 phosphate ABC transpo 99.5 1.9E-14 4.2E-19 140.0 8.4 155 40-197 28-207 (252)
267 TIGR00955 3a01204 The Eye Pigm 99.5 2.8E-14 6.1E-19 155.9 10.6 156 40-197 48-226 (617)
268 PRK14252 phosphate ABC transpo 99.5 2.4E-14 5.1E-19 140.6 9.0 156 39-197 38-220 (265)
269 PRK14238 phosphate transporter 99.5 2.5E-14 5.5E-19 140.9 9.2 156 40-197 47-226 (271)
270 COG4161 ArtP ABC-type arginine 99.5 4.7E-14 1E-18 125.8 9.8 150 41-197 26-201 (242)
271 PRK11174 cysteine/glutathione 99.5 4E-14 8.6E-19 154.0 11.5 153 40-196 373-543 (588)
272 PRK14275 phosphate ABC transpo 99.5 2.3E-14 5E-19 142.4 8.8 156 39-197 61-241 (286)
273 TIGR02868 CydC thiol reductant 99.5 3.6E-14 7.8E-19 152.4 10.9 155 39-196 357-528 (529)
274 TIGR02203 MsbA_lipidA lipid A 99.5 4.4E-14 9.5E-19 153.0 11.5 156 40-197 355-528 (571)
275 PRK10636 putative ABC transpor 99.5 8.2E-15 1.8E-19 160.7 5.8 142 40-198 335-488 (638)
276 KOG0061 Transporter, ABC super 99.5 3.7E-14 8.1E-19 154.3 10.9 162 40-204 53-236 (613)
277 PRK15177 Vi polysaccharide exp 99.5 5.9E-14 1.3E-18 133.5 10.8 145 40-197 10-163 (213)
278 PRK15064 ABC transporter ATP-b 99.5 1.8E-14 3.9E-19 154.8 7.8 142 40-197 342-495 (530)
279 PRK15134 microcin C ABC transp 99.5 2.4E-14 5.1E-19 153.9 8.6 157 40-199 32-219 (529)
280 COG4619 ABC-type uncharacteriz 99.5 1.7E-13 3.7E-18 123.0 12.5 150 40-197 26-194 (223)
281 PRK14266 phosphate ABC transpo 99.5 2.3E-14 4.9E-19 139.3 7.5 154 40-197 26-205 (250)
282 COG2274 SunT ABC-type bacterio 99.5 5.7E-14 1.2E-18 154.1 11.3 153 40-197 496-668 (709)
283 PRK14257 phosphate ABC transpo 99.5 4.7E-14 1E-18 142.8 9.8 156 40-197 105-284 (329)
284 cd03236 ABC_RNaseL_inhibitor_d 99.5 7.7E-14 1.7E-18 136.4 11.0 149 40-197 23-199 (255)
285 PRK09580 sufC cysteine desulfu 99.5 4.1E-14 8.8E-19 137.2 8.8 46 152-197 158-205 (248)
286 COG4181 Predicted ABC-type tra 99.5 1.4E-13 2.9E-18 124.0 11.3 151 40-197 33-207 (228)
287 PRK11819 putative ABC transpor 99.5 2.9E-14 6.2E-19 154.2 8.4 143 40-197 347-502 (556)
288 TIGR01842 type_I_sec_PrtD type 99.5 6.8E-14 1.5E-18 150.9 11.3 155 40-197 341-514 (544)
289 cd03288 ABCC_SUR2 The SUR doma 99.5 7.6E-14 1.6E-18 136.4 10.5 153 40-197 44-215 (257)
290 COG0488 Uup ATPase components 99.5 2.4E-14 5.1E-19 152.4 7.3 45 152-198 166-211 (530)
291 cd03369 ABCC_NFT1 Domain 2 of 99.5 6.8E-14 1.5E-18 132.1 9.7 138 40-197 31-184 (207)
292 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 2.8E-14 6.1E-19 154.1 8.1 143 40-197 345-500 (552)
293 PRK10982 galactose/methyl gala 99.5 4.1E-14 8.8E-19 150.8 9.0 150 40-197 271-451 (491)
294 CHL00131 ycf16 sulfate ABC tra 99.5 5E-14 1.1E-18 137.0 8.8 150 40-197 30-211 (252)
295 PRK10938 putative molybdenum t 99.5 7.2E-14 1.6E-18 148.8 10.7 152 39-197 282-462 (490)
296 cd03223 ABCD_peroxisomal_ALDP 99.5 1E-13 2.2E-18 126.8 10.0 122 40-197 24-148 (166)
297 TIGR03375 type_I_sec_LssB type 99.5 7.1E-14 1.5E-18 154.9 10.7 155 40-197 488-660 (694)
298 PRK13657 cyclic beta-1,2-gluca 99.5 9E-14 2E-18 151.3 11.3 155 40-197 358-530 (588)
299 COG4604 CeuD ABC-type enteroch 99.5 5.2E-13 1.1E-17 122.8 14.3 161 39-206 23-205 (252)
300 COG4525 TauB ABC-type taurine 99.5 1.9E-13 4.2E-18 125.4 11.4 143 39-198 27-194 (259)
301 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 6.9E-14 1.5E-18 154.8 10.2 152 39-196 475-644 (686)
302 TIGR02204 MsbA_rel ABC transpo 99.5 1E-13 2.2E-18 150.4 11.0 154 39-197 362-535 (576)
303 COG0488 Uup ATPase components 99.5 4.3E-14 9.4E-19 150.4 7.9 142 39-197 344-496 (530)
304 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 9.3E-14 2E-18 154.4 10.8 151 40-196 502-671 (710)
305 PRK10789 putative multidrug tr 99.5 9.6E-14 2.1E-18 150.5 10.5 155 40-197 338-510 (569)
306 PRK11160 cysteine/glutathione 99.5 1.2E-13 2.6E-18 149.8 10.9 154 39-197 362-534 (574)
307 COG0444 DppD ABC-type dipeptid 99.5 8.8E-14 1.9E-18 137.1 8.6 150 39-197 27-214 (316)
308 TIGR02857 CydD thiol reductant 99.5 1.5E-13 3.2E-18 147.6 11.2 154 39-197 344-517 (529)
309 KOG0065 Pleiotropic drug resis 99.5 1.2E-13 2.6E-18 155.4 10.7 160 41-203 815-995 (1391)
310 PRK13409 putative ATPase RIL; 99.5 7.9E-14 1.7E-18 151.3 9.1 144 40-198 96-272 (590)
311 TIGR01193 bacteriocin_ABC ABC- 99.5 1.3E-13 2.7E-18 153.3 10.6 154 40-197 497-669 (708)
312 COG4598 HisP ABC-type histidin 99.5 2.9E-13 6.3E-18 122.7 10.9 150 41-197 30-212 (256)
313 PRK15064 ABC transporter ATP-b 99.5 5.9E-14 1.3E-18 150.9 7.5 144 40-199 24-214 (530)
314 TIGR01192 chvA glucan exporter 99.5 1.6E-13 3.6E-18 149.2 11.0 156 39-197 357-530 (585)
315 PLN03073 ABC transporter F fam 99.5 3.6E-14 7.8E-19 156.8 5.9 143 40-197 532-684 (718)
316 PLN03140 ABC transporter G fam 99.5 1.1E-13 2.4E-18 162.8 9.9 153 41-197 904-1079(1470)
317 cd00267 ABC_ATPase ABC (ATP-bi 99.5 2.6E-13 5.6E-18 122.6 10.1 110 41-197 23-140 (157)
318 PRK11819 putative ABC transpor 99.5 7E-14 1.5E-18 151.2 7.5 142 40-198 30-221 (556)
319 TIGR00956 3a01205 Pleiotropic 99.5 9.9E-14 2.2E-18 163.3 8.9 156 40-197 786-962 (1394)
320 cd03291 ABCC_CFTR1 The CFTR su 99.5 2.3E-13 5E-18 134.9 10.1 145 40-197 60-219 (282)
321 PRK10636 putative ABC transpor 99.4 1.1E-13 2.5E-18 151.7 7.8 152 40-199 24-208 (638)
322 cd03238 ABC_UvrA The excision 99.4 1.4E-13 3.1E-18 127.1 7.0 46 152-197 100-149 (176)
323 TIGR00954 3a01203 Peroxysomal 99.4 2.5E-13 5.4E-18 149.5 10.1 166 40-235 475-658 (659)
324 TIGR01846 type_I_sec_HlyB type 99.4 2.7E-13 6E-18 150.3 10.5 155 40-197 480-652 (694)
325 TIGR00958 3a01208 Conjugate Tr 99.4 2.5E-13 5.4E-18 150.9 10.0 152 39-196 503-673 (711)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 3.5E-13 7.5E-18 120.4 8.3 104 40-197 23-127 (144)
327 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.5E-13 3.1E-18 148.6 7.0 142 40-198 28-219 (552)
328 COG1123 ATPase components of v 99.4 2.1E-13 4.5E-18 143.4 7.7 154 39-198 31-216 (539)
329 COG4987 CydC ABC-type transpor 99.4 1.1E-12 2.3E-17 136.2 12.2 155 39-198 360-534 (573)
330 COG4175 ProV ABC-type proline/ 99.4 7.3E-13 1.6E-17 129.6 10.2 177 41-234 52-252 (386)
331 COG4138 BtuD ABC-type cobalami 99.4 5.3E-12 1.2E-16 114.1 14.6 147 40-197 22-192 (248)
332 COG4148 ModC ABC-type molybdat 99.4 6E-13 1.3E-17 128.1 8.9 143 44-197 25-189 (352)
333 COG1134 TagH ABC-type polysacc 99.4 2E-12 4.4E-17 122.9 12.1 144 41-197 51-207 (249)
334 PRK10535 macrolide transporter 99.4 3.8E-13 8.3E-18 147.8 8.4 150 40-198 31-205 (648)
335 PRK08181 transposase; Validate 99.4 2E-12 4.4E-17 127.0 12.0 142 42-238 105-248 (269)
336 PRK08939 primosomal protein Dn 99.4 2.9E-12 6.3E-17 128.3 13.3 141 42-236 155-305 (306)
337 PRK06526 transposase; Provisio 99.4 2.3E-12 5.1E-17 125.7 12.1 143 41-238 96-240 (254)
338 COG1101 PhnK ABC-type uncharac 99.4 2.3E-12 5E-17 120.0 11.4 163 39-206 28-218 (263)
339 TIGR01194 cyc_pep_trnsptr cycl 99.4 1.2E-12 2.5E-17 141.7 10.6 151 40-197 365-531 (555)
340 PRK10522 multidrug transporter 99.4 7.5E-13 1.6E-17 142.9 8.7 149 40-196 346-509 (547)
341 COG1132 MdlB ABC-type multidru 99.4 1.5E-12 3.2E-17 141.2 11.0 170 40-231 352-539 (567)
342 KOG0927 Predicted transporter 99.4 1.9E-12 4.1E-17 134.1 10.9 148 38-197 411-566 (614)
343 COG4618 ArpD ABC-type protease 99.4 4.5E-12 9.8E-17 130.7 12.2 151 40-196 359-531 (580)
344 PTZ00265 multidrug resistance 99.4 2.1E-12 4.6E-17 152.6 11.2 171 39-230 1190-1433(1466)
345 PRK09183 transposase/IS protei 99.4 7.4E-12 1.6E-16 122.7 13.1 145 40-238 99-246 (259)
346 COG4608 AppF ABC-type oligopep 99.3 2.1E-12 4.5E-17 124.8 8.6 133 39-205 35-178 (268)
347 PRK11147 ABC transporter ATPas 99.3 1.8E-12 3.9E-17 142.3 9.3 46 152-199 169-215 (635)
348 KOG0058 Peptide exporter, ABC 99.3 2.9E-12 6.4E-17 137.1 10.5 155 39-196 490-662 (716)
349 PTZ00265 multidrug resistance 99.3 3.3E-12 7.1E-17 151.0 11.9 157 40-197 408-640 (1466)
350 KOG0057 Mitochondrial Fe/S clu 99.3 3.7E-12 8.1E-17 132.4 10.5 170 39-231 374-561 (591)
351 TIGR00956 3a01205 Pleiotropic 99.3 1.1E-12 2.5E-17 154.5 7.6 156 41-197 85-270 (1394)
352 PLN03232 ABC transporter C fam 99.3 2.4E-12 5.2E-17 153.0 10.0 155 39-197 1258-1430(1495)
353 PLN03140 ABC transporter G fam 99.3 1.6E-12 3.5E-17 153.1 8.4 156 41-197 189-397 (1470)
354 COG4172 ABC-type uncharacteriz 99.3 4.4E-12 9.5E-17 127.6 9.4 150 39-197 309-487 (534)
355 PLN03130 ABC transporter C fam 99.3 3.5E-12 7.6E-17 152.1 9.7 155 39-197 1261-1433(1622)
356 COG4136 ABC-type uncharacteriz 99.3 7E-12 1.5E-16 110.8 9.0 151 41-197 26-195 (213)
357 cd03279 ABC_sbcCD SbcCD and ot 99.3 3.7E-12 8.1E-17 121.1 7.8 41 157-197 151-193 (213)
358 PRK08116 hypothetical protein; 99.3 1.6E-11 3.5E-16 120.9 12.4 141 42-238 113-255 (268)
359 COG0396 sufC Cysteine desulfur 99.3 1.6E-11 3.4E-16 115.7 11.3 153 40-197 27-204 (251)
360 COG4107 PhnK ABC-type phosphon 99.3 9.8E-12 2.1E-16 112.3 9.3 55 152-206 164-221 (258)
361 TIGR00957 MRP_assoc_pro multi 99.3 6.1E-12 1.3E-16 149.8 9.5 170 39-231 1308-1495(1522)
362 PLN03073 ABC transporter F fam 99.3 2.6E-11 5.6E-16 134.3 13.7 53 144-198 342-402 (718)
363 TIGR01271 CFTR_protein cystic 99.3 8E-12 1.7E-16 148.4 10.0 153 39-196 1241-1411(1490)
364 PTZ00243 ABC transporter; Prov 99.3 9.5E-12 2.1E-16 148.1 10.6 154 39-196 1332-1504(1560)
365 KOG0055 Multidrug/pheromone ex 99.3 8.5E-12 1.9E-16 140.6 9.0 155 39-196 375-547 (1228)
366 KOG0062 ATPase component of AB 99.3 7.3E-12 1.6E-16 129.2 7.2 46 152-199 211-257 (582)
367 COG1222 RPT1 ATP-dependent 26S 99.3 6.3E-11 1.4E-15 117.8 13.0 146 39-239 181-351 (406)
368 cd03278 ABC_SMC_barmotin Barmo 99.2 1.2E-11 2.7E-16 116.3 7.4 42 156-197 134-176 (197)
369 cd03274 ABC_SMC4_euk Eukaryoti 99.2 5.3E-12 1.2E-16 120.1 4.9 40 157-196 149-189 (212)
370 PF01695 IstB_IS21: IstB-like 99.2 1.7E-11 3.7E-16 113.5 7.8 132 41-226 45-178 (178)
371 PLN03232 ABC transporter C fam 99.2 1.1E-11 2.4E-16 147.4 8.1 146 40-197 640-800 (1495)
372 TIGR01271 CFTR_protein cystic 99.2 2.2E-11 4.7E-16 144.7 9.9 145 41-198 450-609 (1490)
373 PRK12377 putative replication 99.2 8.3E-11 1.8E-15 114.3 12.2 138 43-238 101-241 (248)
374 COG4778 PhnL ABC-type phosphon 99.2 1E-10 2.2E-15 105.4 11.6 153 39-198 33-213 (235)
375 KOG0066 eIF2-interacting prote 99.2 2E-10 4.4E-15 116.4 14.5 144 37-197 607-761 (807)
376 TIGR00957 MRP_assoc_pro multi 99.2 3.4E-11 7.3E-16 143.5 9.9 146 40-198 661-823 (1522)
377 PLN03130 ABC transporter C fam 99.2 2.4E-11 5.3E-16 145.0 8.4 146 40-197 640-800 (1622)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.2 2.4E-11 5.1E-16 118.4 6.6 40 156-196 187-228 (251)
379 cd03272 ABC_SMC3_euk Eukaryoti 99.2 9.8E-12 2.1E-16 120.2 3.8 41 156-197 179-220 (243)
380 COG4172 ABC-type uncharacteriz 99.2 3.5E-11 7.5E-16 121.2 7.7 153 39-197 32-218 (534)
381 cd03283 ABC_MutS-like MutS-lik 99.2 4.5E-11 9.7E-16 112.7 7.8 41 157-197 105-148 (199)
382 PTZ00243 ABC transporter; Prov 99.2 5.8E-11 1.2E-15 141.5 10.5 144 41-198 684-843 (1560)
383 PRK06835 DNA replication prote 99.2 1.6E-10 3.4E-15 116.8 11.9 139 43-238 183-323 (329)
384 KOG0055 Multidrug/pheromone ex 99.2 7.5E-11 1.6E-15 133.1 10.1 155 39-196 1012-1184(1228)
385 cd03240 ABC_Rad50 The catalyti 99.1 5.8E-11 1.3E-15 112.3 6.6 46 152-197 134-183 (204)
386 cd03270 ABC_UvrA_I The excisio 99.1 1.1E-10 2.3E-15 112.2 8.1 46 152-197 150-199 (226)
387 COG1484 DnaC DNA replication p 99.1 7.2E-10 1.6E-14 108.3 12.8 140 42-238 104-248 (254)
388 PF00005 ABC_tran: ABC transpo 99.1 5.4E-11 1.2E-15 104.5 4.4 113 41-167 9-136 (137)
389 cd03280 ABC_MutS2 MutS2 homolo 99.1 4E-10 8.8E-15 106.1 9.9 41 156-196 107-150 (200)
390 COG4167 SapF ABC-type antimicr 99.1 6.4E-10 1.4E-14 101.4 10.6 152 39-196 35-209 (267)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.1 5.7E-10 1.2E-14 108.5 11.0 45 152-196 168-218 (247)
392 KOG0727 26S proteasome regulat 99.1 3.3E-10 7.1E-15 107.8 8.9 122 39-216 185-326 (408)
393 PRK07952 DNA replication prote 99.1 1.3E-09 2.8E-14 105.7 12.6 138 43-237 99-239 (244)
394 COG1129 MglA ABC-type sugar tr 99.1 3.3E-10 7.2E-15 118.7 8.8 152 40-197 282-461 (500)
395 PRK06921 hypothetical protein; 99.0 2.2E-09 4.7E-14 105.7 13.2 134 42-236 116-258 (266)
396 KOG0927 Predicted transporter 99.0 1E-09 2.2E-14 114.2 10.9 56 141-197 216-279 (614)
397 cd03276 ABC_SMC6_euk Eukaryoti 99.0 1.1E-09 2.4E-14 103.1 10.1 44 155-198 129-177 (198)
398 COG4178 ABC-type uncharacteriz 99.0 7.4E-10 1.6E-14 118.3 9.4 150 39-197 415-573 (604)
399 cd03271 ABC_UvrA_II The excisi 99.0 4.5E-09 9.6E-14 103.0 12.7 46 152-197 182-232 (261)
400 cd03243 ABC_MutS_homologs The 99.0 2.7E-09 5.9E-14 100.6 10.3 43 155-197 106-151 (202)
401 COG1245 Predicted ATPase, RNas 99.0 2.4E-09 5.2E-14 109.5 10.3 67 138-204 205-280 (591)
402 KOG0733 Nuclear AAA ATPase (VC 98.9 4.9E-09 1.1E-13 110.2 11.7 146 39-239 541-710 (802)
403 cd03282 ABC_MSH4_euk MutS4 hom 98.9 5.6E-09 1.2E-13 98.8 11.2 43 155-197 106-151 (204)
404 PRK06893 DNA replication initi 98.9 2.9E-09 6.2E-14 102.5 9.0 48 156-203 90-140 (229)
405 cd03239 ABC_SMC_head The struc 98.9 3.1E-09 6.8E-14 98.4 8.2 42 156-197 115-158 (178)
406 cd03227 ABC_Class2 ABC-type Cl 98.9 1.1E-08 2.4E-13 93.1 11.6 41 157-197 99-141 (162)
407 COG1245 Predicted ATPase, RNas 98.9 2.1E-09 4.6E-14 109.8 7.4 137 42-198 366-517 (591)
408 PF00308 Bac_DnaA: Bacterial d 98.9 6.8E-09 1.5E-13 99.3 10.6 106 44-203 35-145 (219)
409 KOG0056 Heavy metal exporter H 98.9 5E-09 1.1E-13 107.8 9.8 153 40-196 561-732 (790)
410 KOG0054 Multidrug resistance-a 98.9 2.9E-09 6.2E-14 122.9 8.9 144 41-197 545-703 (1381)
411 cd03281 ABC_MSH5_euk MutS5 hom 98.9 7.2E-09 1.6E-13 98.7 10.3 44 154-197 105-154 (213)
412 PRK08727 hypothetical protein; 98.9 1E-08 2.2E-13 99.0 11.3 66 156-231 92-162 (233)
413 PRK08084 DNA replication initi 98.9 1.6E-08 3.4E-13 97.8 10.8 117 43-231 45-167 (235)
414 KOG0734 AAA+-type ATPase conta 98.9 7.6E-09 1.6E-13 107.3 9.0 159 18-238 318-499 (752)
415 KOG0730 AAA+-type ATPase [Post 98.8 2.4E-09 5.2E-14 113.7 5.3 146 39-239 464-631 (693)
416 PRK05642 DNA replication initi 98.8 1.5E-08 3.3E-13 97.8 10.4 49 156-204 96-146 (234)
417 PRK14088 dnaA chromosomal repl 98.8 3.4E-08 7.3E-13 104.0 13.3 46 157-202 194-241 (440)
418 smart00534 MUTSac ATPase domai 98.8 2.8E-09 6.2E-14 99.1 4.6 42 156-197 77-122 (185)
419 COG4615 PvdE ABC-type sideroph 98.8 3.6E-08 7.8E-13 99.4 12.5 145 43-197 349-509 (546)
420 cd03277 ABC_SMC5_euk Eukaryoti 98.8 1.6E-08 3.4E-13 96.4 9.5 44 155-198 146-193 (213)
421 KOG0062 ATPase component of AB 98.8 4.3E-09 9.4E-14 109.0 5.6 138 43-197 390-539 (582)
422 TIGR02858 spore_III_AA stage I 98.8 2.2E-08 4.8E-13 98.6 10.0 26 44-69 112-137 (270)
423 COG3910 Predicted ATPase [Gene 98.8 2.8E-08 6.2E-13 91.1 9.8 41 156-196 145-187 (233)
424 KOG0054 Multidrug resistance-a 98.8 2.1E-08 4.6E-13 115.8 10.9 180 39-235 1162-1361(1381)
425 PRK14086 dnaA chromosomal repl 98.8 2.9E-08 6.4E-13 106.9 11.1 48 156-203 376-425 (617)
426 PRK14087 dnaA chromosomal repl 98.8 3.9E-08 8.4E-13 103.8 11.8 47 156-202 205-253 (450)
427 KOG0733 Nuclear AAA ATPase (VC 98.7 2.3E-08 5E-13 105.3 8.5 144 39-238 219-389 (802)
428 COG5265 ATM1 ABC-type transpor 98.7 3.9E-08 8.4E-13 100.0 9.8 154 39-196 285-457 (497)
429 KOG2355 Predicted ABC-type tra 98.7 1.4E-08 3.1E-13 94.3 5.9 146 41-197 38-208 (291)
430 PRK00149 dnaA chromosomal repl 98.7 8.1E-08 1.8E-12 101.5 11.5 48 156-203 210-259 (450)
431 PRK12422 chromosomal replicati 98.7 7.5E-08 1.6E-12 101.4 11.0 48 156-203 201-250 (445)
432 PTZ00454 26S protease regulato 98.7 1.1E-07 2.3E-12 98.8 11.9 30 39-68 175-204 (398)
433 TIGR00362 DnaA chromosomal rep 98.7 1E-07 2.3E-12 99.3 11.5 48 156-203 198-247 (405)
434 COG1223 Predicted ATPase (AAA+ 98.7 4.5E-08 9.7E-13 93.9 7.5 27 42-68 150-176 (368)
435 KOG0060 Long-chain acyl-CoA tr 98.7 8.8E-08 1.9E-12 100.7 10.0 171 40-236 458-647 (659)
436 COG4170 SapD ABC-type antimicr 98.6 1.1E-07 2.3E-12 88.8 8.6 153 41-196 31-218 (330)
437 PRK08533 flagellar accessory p 98.6 4.7E-07 1E-11 87.2 13.3 43 156-198 116-163 (230)
438 PRK00635 excinuclease ABC subu 98.6 1.4E-07 2.9E-12 112.0 11.2 47 152-198 822-873 (1809)
439 COG2401 ABC-type ATPase fused 98.6 6E-08 1.3E-12 98.4 6.7 142 41-197 407-568 (593)
440 TIGR01069 mutS2 MutS2 family p 98.6 1.1E-07 2.5E-12 106.1 9.5 42 156-197 401-445 (771)
441 cd03287 ABC_MSH3_euk MutS3 hom 98.6 4.1E-07 8.9E-12 87.2 12.0 43 156-198 109-155 (222)
442 cd03284 ABC_MutS1 MutS1 homolo 98.6 1.9E-07 4.1E-12 89.1 9.6 42 156-197 108-153 (216)
443 PRK06620 hypothetical protein; 98.6 2.6E-07 5.7E-12 88.1 10.5 60 157-231 85-147 (214)
444 TIGR01242 26Sp45 26S proteasom 98.6 2.9E-07 6.2E-12 94.7 11.1 29 40-68 153-181 (364)
445 KOG0728 26S proteasome regulat 98.6 5.3E-07 1.1E-11 86.2 11.2 144 39-238 177-346 (404)
446 PLN03025 replication factor C 98.6 2.6E-07 5.6E-12 93.3 9.5 59 1-68 1-59 (319)
447 COG0593 DnaA ATPase involved i 98.6 3.7E-07 8E-12 94.1 10.6 68 157-231 175-244 (408)
448 KOG0731 AAA+-type ATPase conta 98.5 2.7E-07 6E-12 100.7 9.6 145 39-238 340-511 (774)
449 PRK09087 hypothetical protein; 98.5 3.6E-07 7.7E-12 87.9 9.1 45 159-204 89-133 (226)
450 PLN00020 ribulose bisphosphate 98.5 9.6E-07 2.1E-11 89.6 12.2 30 39-68 144-173 (413)
451 PRK03992 proteasome-activating 98.5 4.7E-07 1E-11 94.0 10.1 30 39-68 161-190 (389)
452 CHL00206 ycf2 Ycf2; Provisiona 98.5 2.6E-07 5.7E-12 108.1 8.8 29 40-68 1627-1655(2281)
453 PRK12402 replication factor C 98.5 5.9E-07 1.3E-11 90.7 10.3 59 1-68 3-61 (337)
454 KOG0066 eIF2-interacting prote 98.5 1.1E-07 2.3E-12 96.9 4.8 51 152-204 425-476 (807)
455 PF00004 AAA: ATPase family as 98.5 6.7E-07 1.4E-11 77.2 9.1 23 46-68 1-23 (132)
456 cd03285 ABC_MSH2_euk MutS2 hom 98.5 6E-07 1.3E-11 86.1 9.6 40 155-196 107-152 (222)
457 PTZ00361 26 proteosome regulat 98.5 5E-07 1.1E-11 94.6 9.6 30 39-68 213-242 (438)
458 cd03241 ABC_RecN RecN ATPase i 98.5 5.2E-07 1.1E-11 89.2 9.3 40 157-196 192-232 (276)
459 PHA02544 44 clamp loader, smal 98.5 9.1E-07 2E-11 88.8 10.9 58 2-67 10-67 (316)
460 TIGR01241 FtsH_fam ATP-depende 98.5 6.3E-07 1.4E-11 95.9 10.2 29 40-68 85-113 (495)
461 CHL00176 ftsH cell division pr 98.5 6.3E-07 1.4E-11 98.1 10.0 28 40-67 213-240 (638)
462 PRK00409 recombination and DNA 98.5 6.9E-07 1.5E-11 100.1 10.4 42 156-197 406-450 (782)
463 TIGR01243 CDC48 AAA family ATP 98.4 8.9E-07 1.9E-11 99.1 11.2 83 156-238 545-650 (733)
464 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.5E-11 74.2 10.8 44 156-199 83-131 (151)
465 TIGR00630 uvra excinuclease AB 98.4 9.8E-07 2.1E-11 100.0 10.9 46 152-197 841-891 (924)
466 TIGR03420 DnaA_homol_Hda DnaA 98.4 6.9E-07 1.5E-11 85.1 8.3 47 156-202 89-137 (226)
467 KOG0729 26S proteasome regulat 98.4 1.8E-06 4E-11 83.2 10.9 117 39-211 207-343 (435)
468 KOG0652 26S proteasome regulat 98.4 9E-07 2E-11 85.1 8.5 143 39-237 201-369 (424)
469 KOG0735 AAA+-type ATPase [Post 98.4 1E-06 2.2E-11 94.5 9.8 145 39-238 697-863 (952)
470 cd01120 RecA-like_NTPases RecA 98.4 1.8E-06 4E-11 76.7 10.1 45 156-200 84-140 (165)
471 PRK00349 uvrA excinuclease ABC 98.4 1.6E-06 3.5E-11 98.5 11.8 46 152-197 843-893 (943)
472 PRK04195 replication factor C 98.4 8.9E-07 1.9E-11 94.4 9.2 63 1-68 2-64 (482)
473 CHL00195 ycf46 Ycf46; Provisio 98.4 7.1E-07 1.5E-11 94.8 8.1 30 39-68 255-284 (489)
474 PF02463 SMC_N: RecF/RecN/SMC 98.4 2.6E-07 5.7E-12 87.8 3.5 42 156-197 157-199 (220)
475 PRK14962 DNA polymerase III su 98.3 3.6E-07 7.7E-12 96.9 4.6 58 3-68 4-61 (472)
476 cd03286 ABC_MSH6_euk MutS6 hom 98.3 2.7E-06 5.8E-11 81.3 10.2 42 156-197 108-153 (218)
477 PRK00440 rfc replication facto 98.3 1.7E-06 3.6E-11 86.7 8.1 57 3-68 7-63 (319)
478 PRK08903 DnaA regulatory inact 98.3 3E-06 6.4E-11 81.1 9.4 45 156-200 89-134 (227)
479 TIGR03689 pup_AAA proteasome A 98.3 1.8E-06 3.9E-11 91.9 8.6 29 40-68 213-241 (512)
480 KOG0651 26S proteasome regulat 98.3 1.4E-06 3.1E-11 85.6 7.1 30 39-68 162-191 (388)
481 KOG0065 Pleiotropic drug resis 98.3 1.2E-06 2.6E-11 100.0 7.2 159 40-199 138-323 (1391)
482 COG0465 HflB ATP-dependent Zn 98.3 1E-06 2.3E-11 94.5 6.4 143 41-238 181-348 (596)
483 PRK07003 DNA polymerase III su 98.2 2.9E-06 6.3E-11 93.0 8.1 58 3-68 6-63 (830)
484 KOG0064 Peroxisomal long-chain 98.2 2.3E-06 4.9E-11 89.4 6.9 165 40-236 505-689 (728)
485 cd01124 KaiC KaiC is a circadi 98.2 1.3E-05 2.8E-10 73.9 11.4 43 156-198 94-141 (187)
486 TIGR01243 CDC48 AAA family ATP 98.2 4.4E-06 9.5E-11 93.6 9.1 30 39-68 208-237 (733)
487 smart00382 AAA ATPases associa 98.2 2.7E-05 5.8E-10 66.4 12.1 26 43-68 2-27 (148)
488 KOG0989 Replication factor C, 98.2 2E-06 4.3E-11 84.6 5.2 59 2-69 25-83 (346)
489 KOG0736 Peroxisome assembly fa 98.2 4.8E-06 1E-10 90.2 8.2 84 156-239 763-873 (953)
490 PRK14956 DNA polymerase III su 98.2 2.8E-06 6.1E-11 89.5 6.3 58 3-68 8-65 (484)
491 PRK13342 recombination factor 98.2 1E-05 2.2E-10 84.7 10.5 60 3-68 2-61 (413)
492 KOG0726 26S proteasome regulat 98.2 5.1E-06 1.1E-10 81.1 7.5 30 39-68 215-244 (440)
493 COG2256 MGS1 ATPase related to 98.1 6.3E-06 1.4E-10 83.8 8.3 27 42-68 47-73 (436)
494 COG0464 SpoVK ATPases of the A 98.1 8.1E-06 1.7E-10 87.3 9.2 30 39-68 272-301 (494)
495 PRK13695 putative NTPase; Prov 98.1 1.3E-05 2.8E-10 73.6 9.3 41 155-196 94-135 (174)
496 PRK14961 DNA polymerase III su 98.1 6.2E-06 1.3E-10 84.8 7.9 58 3-68 6-63 (363)
497 PRK06067 flagellar accessory p 98.1 1.1E-05 2.5E-10 77.5 9.2 35 27-64 12-46 (234)
498 PRK12323 DNA polymerase III su 98.1 4.5E-06 9.7E-11 90.4 6.8 58 3-68 6-63 (700)
499 PRK10733 hflB ATP-dependent me 98.1 1E-05 2.2E-10 89.2 9.8 28 41-68 183-210 (644)
500 PRK14949 DNA polymerase III su 98.1 6.7E-06 1.5E-10 91.7 8.1 58 3-68 6-63 (944)
No 1
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=100.00 E-value=6.1e-96 Score=722.82 Aligned_cols=350 Identities=43% Similarity=0.701 Sum_probs=293.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
+.+|||+||||.+|||||||||+|++.+++ +..+.|||||+||..+|+++|..+++....... +--+|
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~--~a~~~--------- 178 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPG--YAKSW--------- 178 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCcc--ccccc---------
Confidence 456999999999999999999999999986 678999999999999999999998864321111 00000
Q ss_pred HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
.-+++..+|.+++ .++.||||||+|++|+++|++|.+||..|++.|+|||+||||+|
T Consensus 179 ----------------~~Dpl~~vA~eIa-------~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P 235 (467)
T KOG2383|consen 179 ----------------EIDPLPVVADEIA-------EEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAP 235 (467)
T ss_pred ----------------cCCccHHHHHHHh-------hhceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCCh
Confidence 1256788898886 78999999999999999999999999999999999999999999
Q ss_pred cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhccccCCCceeEEecCChHHHHHHHHHHHHHhcccCCCccccc
Q 012882 200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISST 279 (454)
Q Consensus 200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (454)
+|||+||+||+.|+|||.+|+++|.|+.++|++|||+... +.+ ..||.+...+.+..+++.|+.+++++.+.. +..
T Consensus 236 ~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR~~~~--~~~-~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~-~~~ 311 (467)
T KOG2383|consen 236 EDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYRRKAK--SAG-ENYYFISETDVETVLKEWFKLLAADQNDGT-RQR 311 (467)
T ss_pred HHHhhcchhhhhhhhHHHHHHHhheEEecCCccchhhccC--CCC-ceeEecChhhHHHHHHHHHHHHhccCCCCC-CCc
Confidence 9999999999999999999999999999999999995432 222 245555555788899999988887655443 445
Q ss_pred eeeecCceeecccccCCEEEEechhhhCCCCChhHHHHHHhcCCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEE
Q 012882 280 IPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLF 359 (454)
Q Consensus 280 ~~~~~gR~~~v~~~~~~va~f~F~eLC~~~lg~aDYl~la~~f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~ 359 (454)
+++++||++.||++|||||+|||+|||++|+||+|||.||++||||||+|||+|++..||+|||||||||++||++|||+
T Consensus 312 ~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv 391 (467)
T KOG2383|consen 312 TLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLV 391 (467)
T ss_pred ceeeecceEEecccCCCcccccHHHHhCCccchHHHHHHHhhcceeEeeccchhhhHHHHHHhhHhHHHHHHhhccceEE
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhhhccCCCCCccccccccchhhhhhc-ccccchhhccCCCCCCCCCCCcccCCcchhHHHhHhhhHhhhhccc
Q 012882 360 CSAASSIDDLFQGTEEGTLFDLESFQFETEIEG-GKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTL 438 (454)
Q Consensus 360 ~~a~~~~~~lf~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ee~fAf~R~~SRl~eM~ 438 (454)
|+|++|+++||...... + ++... +.+|+|+.. ..+..+.+.+|+|+||.|||+||+|||+|||
T Consensus 392 ~sa~~p~~~Lf~~~~~~---e-------~ls~s~r~~mddl~i------ks~~~~~~~mf~g~EE~FAf~RtlSRL~eMq 455 (467)
T KOG2383|consen 392 CSAATPLEELFQFTGHS---E-------ALSDSPRTLMDDLGI------KSDSAGGSPMFSGEEEGFAFDRTLSRLYEMQ 455 (467)
T ss_pred ecCCCCHHHHhcccCcc---c-------ccccCcccchhhhcc------cccCccccccccchHHHHHHHHHHHHHHHhh
Confidence 99999999999865431 1 11111 334555422 2222333459999999999999999999999
Q ss_pred cccccc
Q 012882 439 VVDIND 444 (454)
Q Consensus 439 ~~~~~~ 444 (454)
|.+|-.
T Consensus 456 t~~y~~ 461 (467)
T KOG2383|consen 456 TELYWE 461 (467)
T ss_pred cchhcc
Confidence 988543
No 2
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=100.00 E-value=5.8e-83 Score=647.94 Aligned_cols=312 Identities=44% Similarity=0.762 Sum_probs=279.5
Q ss_pred hhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhh
Q 012882 29 LDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSIS 108 (454)
Q Consensus 29 ~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~ 108 (454)
+..++++++ ...+|+|+||||++|+|||+||++|+..+| +..|.|+|||+||.++|+.++...+
T Consensus 49 ~~~~~~~~~-~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp--~~~k~R~HFh~Fm~~vh~~l~~~~~------------- 112 (362)
T PF03969_consen 49 LRKLFGRKP-PPPPPKGLYLWGPVGRGKTMLMDLFYDSLP--IKRKRRVHFHEFMLDVHSRLHQLRG------------- 112 (362)
T ss_pred HHHHhcCCc-cCCCCceEEEECCCCCchhHHHHHHHHhCC--ccccccccccHHHHHHHHHHHHHhC-------------
Confidence 344555444 456899999999999999999999999998 4689999999999999999998752
Q ss_pred ccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCC
Q 012882 109 GWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTG 188 (454)
Q Consensus 109 ~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G 188 (454)
..+++..+|+.+. .+.+|||||||++.|+++||+|.++|..|+++|
T Consensus 113 ---------------------------~~~~l~~va~~l~-------~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~g 158 (362)
T PF03969_consen 113 ---------------------------QDDPLPQVADELA-------KESRLLCFDEFQVTDIADAMILKRLFEALFKRG 158 (362)
T ss_pred ---------------------------CCccHHHHHHHHH-------hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCC
Confidence 2355678888886 679999999999999999999999999999999
Q ss_pred cEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhccccCCCceeEEecCChHHHHHHHHHHHHHh
Q 012882 189 TVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVT 268 (454)
Q Consensus 189 ~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~ 268 (454)
+|||+|||++|++||+||+||++|+|||++|+++|+|+++++++|||+.... ....|++|.+..+.+.++++|..++
T Consensus 159 vvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~~DyR~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (362)
T PF03969_consen 159 VVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGGVDYRRRGAP---PAPVYFYPLDEEADAALERLFQRLT 235 (362)
T ss_pred CEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCCCchhhhccc---ccccccCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999996432 3458999999999999999999998
Q ss_pred cccCCCccccceeeecCceeecccccCCEEEEechhhhCCCCChhHHHHHHhcCCEEEEcCCCCCCcCCchhhhhhhhhH
Q 012882 269 NHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLI 348 (454)
Q Consensus 269 ~~~~~~~~~~~~~~~~gR~~~v~~~~~~va~f~F~eLC~~~lg~aDYl~la~~f~ti~i~~VP~l~~~~~~~arRFi~lI 348 (454)
+. .+..+.++. +.||+|.||++++++|||||+|||++|+||+||++||++||||||+|||+|+..++|+|||||+||
T Consensus 236 ~~--~~~~~~~l~-v~gR~i~v~~~~~~va~F~F~eLC~~plg~aDYlaLA~~F~ti~I~~VP~l~~~~~n~arRFI~LI 312 (362)
T PF03969_consen 236 GG--EPEEPRTLE-VGGREIPVPRACGGVAWFDFDELCERPLGAADYLALAERFHTIFISDVPVLSESDRNEARRFITLI 312 (362)
T ss_pred cc--cCCCCceeE-EeeeEEeeecccCCEEEecHHHhhccCCCHHHHHHHHHhCCEEEEcCCCCcccCChhHHHHHHHHH
Confidence 73 233445554 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCceEEEEecCChhhhccCCCCCccccccccchhhhhhcccccchhhccCCCCCCCCCCCcccCCcchhHHHhHh
Q 012882 349 DELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFR 428 (454)
Q Consensus 349 D~lYe~~~kl~~~a~~~~~~lf~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ee~fAf~ 428 (454)
|+|||++|+|+|+|++||++||.+.. ..|.|+
T Consensus 313 D~LYd~~v~L~~sa~~~~~~L~~~~~------------------------------------------------~~~~f~ 344 (362)
T PF03969_consen 313 DVLYDRKVKLIISAAAPPDELFQGGR------------------------------------------------LAFEFQ 344 (362)
T ss_pred HHHhhCCCcEEEEcCCCHHHHHhCCC------------------------------------------------chhhhh
Confidence 99999999999999999999996421 168899
Q ss_pred hhHhhhhccccccccc
Q 012882 429 RAWFVTVSTLVVDIND 444 (454)
Q Consensus 429 R~~SRl~eM~~~~~~~ 444 (454)
||+|||.|||+.+|..
T Consensus 345 RT~SRL~Em~~~~y~~ 360 (362)
T PF03969_consen 345 RTASRLSEMQSEEYLA 360 (362)
T ss_pred HHHHHHHHHhhHHHHh
Confidence 9999999999888654
No 3
>COG1485 Predicted ATPase [General function prediction only]
Probab=100.00 E-value=6.7e-82 Score=619.05 Aligned_cols=301 Identities=36% Similarity=0.660 Sum_probs=274.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
..+|+|+||||++|+|||+||++||..+|+ ..|.|+|||.||.++|++++.+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~--~~k~R~HFh~FM~~vH~~l~~l~g------------------------ 115 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG--ERKRRLHFHRFMARVHQRLHTLQG------------------------ 115 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc--cccccccHHHHHHHHHHHHHHHcC------------------------
Confidence 468899999999999999999999999984 468999999999999999998752
Q ss_pred HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
..+++..+|+++. .+.+|||||||++.||+++|+|.+||..|+++|++||+|||.+|
T Consensus 116 ----------------~~dpl~~iA~~~~-------~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P 172 (367)
T COG1485 116 ----------------QTDPLPPIADELA-------AETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAP 172 (367)
T ss_pred ----------------CCCccHHHHHHHH-------hcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCCh
Confidence 2356788898886 78999999999999999999999999999999999999999999
Q ss_pred cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhccccCCCceeEEecCChHHHHHHHHHHHHHhcccCCCccccc
Q 012882 200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISST 279 (454)
Q Consensus 200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (454)
++||+||+||++|+|+|++|+++|.|+.+|+++|||..... ....|++|++.++++.|+++|..++.. ....+..
T Consensus 173 ~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~---~a~~y~~Pl~~~~~~~l~~~~~~ls~~--~~~~~~~ 247 (367)
T COG1485 173 DNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLE---QAPVYLTPLDAEAEAALDKLWAALSDG--APEAAAN 247 (367)
T ss_pred HHhcccchhHHhhHHHHHHHHHheEEEEecCCccccccccc---cCceeecCCcHHHHHHHHHHHHHhccC--CccCCch
Confidence 99999999999999999999999999999999999986533 234899999999999999999999873 2223444
Q ss_pred eeeecCceeecccccCCEEEEechhhhCCCCChhHHHHHHhcCCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEE
Q 012882 280 IPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLF 359 (454)
Q Consensus 280 ~~~~~gR~~~v~~~~~~va~f~F~eLC~~~lg~aDYl~la~~f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~ 359 (454)
+. +.||+|.+|.++++++||+|.+||.+|+|+.|||+||++||||||+|||+|+...+|+|||||+|||++||+++||+
T Consensus 248 l~-i~gR~i~~~~~~~~~~~f~f~~Lc~~p~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRFI~lVD~lYD~~vkL~ 326 (367)
T COG1485 248 LE-IKGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIALVDELYDRGVKLV 326 (367)
T ss_pred hh-ccCceeecccccCcchhccHHHHhhCcCCHHHHHHHHhhccEEEEcCCCCCChhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 54 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhhhccCCCCCccccccccchhhhhhcccccchhhccCCCCCCCCCCCcccCCcchhHHHhHhhhHhhhhcccc
Q 012882 360 CSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLV 439 (454)
Q Consensus 360 ~~a~~~~~~lf~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ee~fAf~R~~SRl~eM~~ 439 (454)
+||++||++||.+.. -.|+|+||+|||.||||
T Consensus 327 ~Sae~~~~~Ly~~~~------------------------------------------------~afeF~Rt~SRL~EMqS 358 (367)
T COG1485 327 ASAEVPLNELYQGGR------------------------------------------------LAFEFQRTLSRLQEMQS 358 (367)
T ss_pred EEccCCHHHhccCch------------------------------------------------hhhHHHHHHHHHHHHHH
Confidence 999999999996431 17999999999999998
Q ss_pred cccc
Q 012882 440 VDIN 443 (454)
Q Consensus 440 ~~~~ 443 (454)
.+|.
T Consensus 359 ~~yl 362 (367)
T COG1485 359 EEYL 362 (367)
T ss_pred HHhh
Confidence 8854
No 4
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1.3e-20 Score=187.61 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=118.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhh--hcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSI--SGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~ 112 (454)
..++.-++|+|||||||||||++|+|.+.+ ..|...+..... ...+.+.++++++. .++.+|+.+++ ++..+
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 345666999999999999999999999975 345555544333 24677788999887 57889999998 44444
Q ss_pred CCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
... .....+++++..+++.... ....+.++.++ .||+++|+|||||||+ +||+..+..++++|+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~ 180 (293)
T COG1131 107 GLSKEEAEERIEELLELFGLEDKA------NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180 (293)
T ss_pred CCChhHHHHHHHHHHHHcCCchhh------CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHH
Confidence 443 2346788889888885411 22345555554 5889999999999999 999999999999999
Q ss_pred HHHhCC-c-EEEEecCCCccchhcC
Q 012882 183 RLLSTG-T-VLVATSNRAPWDLNQD 205 (454)
Q Consensus 183 ~L~~~G-~-vlV~ThN~~P~dLy~~ 205 (454)
.+.++| + |+++||+....+..++
T Consensus 181 ~l~~~g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 181 ELAKEGGVTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHhCCCcEEEEeCCcHHHHHHhCC
Confidence 999987 5 8888887544343333
No 5
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=3e-20 Score=175.01 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=141.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhh--hccccCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSI--SGWITNL 114 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~~~ 114 (454)
..++++-++|+|+||+||||++++|.|.+++ ..+...+........+..+|+|++.+ +++.+|+.+.+ ++.+.++
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~-~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm 102 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-TEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGM 102 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCc-cCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCC
Confidence 3456788999999999999999999999985 46777777777778889999999988 67888998887 6777777
Q ss_pred CCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh---hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC
Q 012882 115 PFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ---HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG 188 (454)
Q Consensus 115 ~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~---rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G 188 (454)
+..+ ...+.+++.+.+.... .+.+..+++...+.- .+++++|++||||||+ +|||.+...|.+.+.++.++|
T Consensus 103 ~~~e~~~~~~~wLer~~i~~~~--~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 103 PKAEIQKKLQAWLERLEIVGKK--TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred cHHHHHHHHHHHHHhccccccc--cchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 6655 4566777777765432 233344444332221 5788999999999999 999999999999999999999
Q ss_pred c-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882 189 T-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 236 (454)
Q Consensus 189 ~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~ 236 (454)
. ||++||++.-.+..|+.+ ++.+++..|.-+.-.|.|+
T Consensus 181 atIifSsH~Me~vEeLCD~l----------lmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 181 ATIIFSSHRMEHVEELCDRL----------LMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CEEEEecchHHHHHHHhhhh----------heecCCceEEeccHHHHHH
Confidence 9 888888877666666653 3445666665555567776
No 6
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.1e-19 Score=166.84 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=126.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhh--hcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSI--SGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~ 112 (454)
..-++-++|+|+||+||||++++|++.+.| ..++..+...+.. ..+.+.++.+..+ ++..+|+.|++ |+.++
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~ 103 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN 103 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence 345677999999999999999999999875 3666666544332 2456666666544 67788999998 66676
Q ss_pred CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
++.... .+.+++...+++.. .+..-+..++.++ |||+++|++|+||||+ +||+.+...+.+++.
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~ 177 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLE------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHH------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHH
Confidence 665553 55667767666633 2333444444443 7999999999999999 999999999999999
Q ss_pred HHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhh
Q 012882 183 RLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY 234 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~Dy 234 (454)
.+.+.|. ||++||.....+-.|+++ ++.+.++++..++....
T Consensus 178 q~k~egr~viFSSH~m~EvealCDrv----------ivlh~Gevv~~gs~~~l 220 (245)
T COG4555 178 QLKNEGRAVIFSSHIMQEVEALCDRV----------IVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HhhcCCcEEEEecccHHHHHHhhheE----------EEEecCcEEEcCCHHHH
Confidence 9999888 888888764444344442 34455666655555333
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.4e-19 Score=174.13 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=106.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhhh----hcccchhhhhhccccCC-
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKNQ----VAEKSLRSSISGWITNL- 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~~----~~~~t~~e~l~~~~~~~- 114 (454)
..+.-+.|+||||+|||||++++.|.++| ..+...+....... .-..+++|++|.. .-..|+.+.+.......
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p-~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~ 106 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK 106 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcC-CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc
Confidence 45677999999999999999999998874 24444432221111 1125789999863 23357888774432221
Q ss_pred -------CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 115 -------PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 115 -------~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
..+...+++.++..++.+. ..+-..+|++++ |||+++|+||+||||+ ++|+.++..+.+
T Consensus 107 g~~~~~~~~d~~~v~~aL~~Vgm~~~------~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~ 180 (254)
T COG1121 107 GWFRRLNKKDKEKVDEALERVGMEDL------RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180 (254)
T ss_pred cccccccHHHHHHHHHHHHHcCchhh------hCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH
Confidence 1122566667777666432 122334556665 7999999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCCC
Q 012882 180 IVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~~ 198 (454)
+|.+|.++|+ ||++|||..
T Consensus 181 lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 181 LLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHCCCEEEEEeCCcH
Confidence 9999999998 999999953
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.78 E-value=2.9e-19 Score=172.66 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=112.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
.+.++-+.|+||||||||||+++|+|.+++ .++.|...+- ..++.+.+++++|. ....+|+.+.+....
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 456788999999999999999999999974 2344544432 23567788899887 456788998884443
Q ss_pred cCC--C---CCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 112 TNL--P---FDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 112 ~~~--~---~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.+. . +.. ..+++.+...++... ..+....+++++ +||+++|++|+||||| .||+..+.
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l------a~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~ 175 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHL------ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHH------hcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHH
Confidence 331 1 122 345555666665332 122344556654 6889999999999999 79999999
Q ss_pred HHHHHHHHHHh-CCc-EEEEecCCCccchhcCC
Q 012882 176 ALSGIVSRLLS-TGT-VLVATSNRAPWDLNQDG 206 (454)
Q Consensus 176 ~L~~ll~~L~~-~G~-vlV~ThN~~P~dLy~~~ 206 (454)
.+.++++.+.+ +|. +|+++|+..-+-.|++.
T Consensus 176 evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 176 EVLELLRDLNREKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 99999999994 577 99999986555555543
No 9
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.77 E-value=4.4e-19 Score=177.79 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=108.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhh--cccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSIS--GWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~--~~~~ 112 (454)
..++.-++|+||||||||||+++|+|.+++ ..|...+..... .....+.+++++|. ....+|+.+++. ....
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 108 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHP-DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF 108 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc
Confidence 345677999999999999999999999875 345444433221 12345667777776 455678888873 2222
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ....+.++..+++... .......+++++ +||+++|++|+||||+ +||+..+..+++++.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~ 182 (306)
T PRK13537 109 GLSAAAARALVPPLLEFAKLENK------ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182 (306)
T ss_pred CCCHHHHHHHHHHHHHHcCCchH------hcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 22211 1334455555555321 122234555554 6899999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCCCccchhcCC
Q 012882 183 RLLSTGT-VLVATSNRAPWDLNQDG 206 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~P~dLy~~~ 206 (454)
++.++|. ||++||+....+-++++
T Consensus 183 ~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 183 SLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCE
Confidence 9987787 88888886444434443
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.77 E-value=2.1e-18 Score=157.26 Aligned_cols=151 Identities=16% Similarity=0.214 Sum_probs=103.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
.+.+.-+||.||+|+||||||++|++...| ..++..+..++.. ..+++.++.+.|+ +....|+.+|+...
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhcC-CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 445667999999999999999999998864 3454444333322 2345566666665 45666777776333
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
+.-..... +++.+++...++.++ ...+-..++++. ||++.+|+||+-|||| .+|+..+..+.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k------~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im 177 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHK------ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchh------hhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH
Confidence 33222222 333444444444332 222333444443 7888999999999999 69999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|.++...|+ |+|+|||.
T Consensus 178 ~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 178 RLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred HHHHHHhhcCcEEEEEeccH
Confidence 99999999999 99999994
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.76 E-value=2.3e-18 Score=163.40 Aligned_cols=157 Identities=16% Similarity=0.112 Sum_probs=120.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
.+.+.-+.|+||+||||||+|+||...+.| ..|...+..... ...++..++|+-|. +.+.+|+.+|+..-+..
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiep-t~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCC-CCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence 345677999999999999999999999975 355555544332 24678899999887 68999999998665555
Q ss_pred CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 114 LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 114 ~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..|+. .++++++...++... ....+.-.++++++ |||+.+|+||++|||+ .+|+-++..|.+.+
T Consensus 103 ~~w~k~~i~~r~~ELl~lvgL~p~----~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 103 LGWDKERIKKRADELLDLVGLDPS----EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCHH----HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence 55665 455667777766421 22344556677775 8999999999999999 69999999999999
Q ss_pred HHHHhC-Cc-EEEEecCCCccc
Q 012882 182 SRLLST-GT-VLVATSNRAPWD 201 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~~P~d 201 (454)
.++.++ |+ ++++||+...+-
T Consensus 179 ~~lq~~l~kTivfVTHDidEA~ 200 (309)
T COG1125 179 KELQKELGKTIVFVTHDIDEAL 200 (309)
T ss_pred HHHHHHhCCEEEEEecCHHHHH
Confidence 999865 66 999999975443
No 12
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=2e-18 Score=160.53 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=107.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech-----hHHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE-----AMLKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~-----f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
...+.-+.|+||+|||||||++||.+.-++ ..|...+.... -...+++.++.+.|. +++.+|+.+|+...+.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcCC-CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 345677999999999999999999997763 23433333311 233456667777776 6788888888733222
Q ss_pred ---CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 ---NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ---~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
..+..+ ..+..++...++.++ .......|++++ |||+.+|++++||||| .|||.....+..
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~k------a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADK------ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhh------hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 222222 344455566665432 233344566665 7889999999999999 799999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
++..|.+.|. .+++||..
T Consensus 178 vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 178 VMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred HHHHHHHcCCeEEEEechh
Confidence 9999999998 99999986
No 13
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=3.8e-18 Score=163.22 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=123.7
Q ss_pred eeecccCCccccCcccccc-cccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech
Q 012882 3 VSVRKNPENVEPGVGRWVS-YLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 81 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~ 81 (454)
++|.|--+-++|+..+..+ +..++++....+..-+...+++.-++++|+||+||||++|+|.|.+.| ..|+.+|....
T Consensus 9 l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~ 87 (325)
T COG4586 9 LSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKD 87 (325)
T ss_pred cccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcC
Confidence 6788988999999666665 666776666666655556666777999999999999999999998865 47888887654
Q ss_pred hHH---HHHHHHHHHhhh---hhcccchhhhh--hccccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh
Q 012882 82 AML---KINEHMHRLWKN---QVAEKSLRSSI--SGWITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ 151 (454)
Q Consensus 82 f~~---~~~~~i~~~~~~---~~~~~t~~e~l--~~~~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~ 151 (454)
... +..+.++++... ...++.+.+.+ ....+..+.+. ++.+.+.+.+++.+ .+..-.+.++.++
T Consensus 88 Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~------~lk~~vr~LSlGq 161 (325)
T COG4586 88 PFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEG------FLKWPVRKLSLGQ 161 (325)
T ss_pred cchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchh------hhhhhhhhccchH
Confidence 432 222333333211 11222222211 11112222222 34444444444432 2333344555444
Q ss_pred -------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 152 -------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 152 -------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+|+++|+||+||||| +||+..+..+.+.++++.+. +. |+.+||+.
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~ 217 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF 217 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch
Confidence 5889999999999999 89999999999999999864 66 88888875
No 14
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.75 E-value=1.6e-18 Score=173.34 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=104.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~ 112 (454)
..++.-++|+||||||||||+++|+|.+++ ..|...+..... .....+.+++++|. ....+|+.+++.. ...
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 94 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY 94 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 356778999999999999999999999874 244333322211 12345567777766 4456788888732 122
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...+++++..+++... .......+++++ +||+.+|++|+||||+ +||+..+..+.++|.
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 168 (302)
T TIGR01188 95 GLPKDEAEERAEELLELFELGEA------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIR 168 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCChhH------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 22111 1345566666666321 122334555554 6889999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCC
Q 012882 183 RLLSTGT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~ 197 (454)
++.++|. ||++||+.
T Consensus 169 ~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 169 ALKEEGVTILLTTHYM 184 (302)
T ss_pred HHHhCCCEEEEECCCH
Confidence 9987777 88999985
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=3.6e-18 Score=161.06 Aligned_cols=156 Identities=14% Similarity=0.152 Sum_probs=106.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISG- 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~- 109 (454)
...++-+.++||+|+||||||+++.|.++|. ++..+++..+.. ..+.++++.+.|. ++..+|+.||+.-
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~-~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCCC-CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 3456669999999999999999999999863 666666655432 2455566666665 6778888888832
Q ss_pred cccCCCCChHHHHHH-HHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 110 WITNLPFDSKVMEWV-AAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 110 ~~~~~~~~~~~~e~l-l~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
-......+...++.+ +..+.+-+..+ ......-.++++++ ||++.+|+||++|||+ ++||-++..+-+|
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~--~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~L 187 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRG--AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCCh--hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHH
Confidence 222222333333322 22222211110 11223344556665 7999999999999999 9999999999999
Q ss_pred HHHHHhC-Cc-EEEEecCCC
Q 012882 181 VSRLLST-GT-VLVATSNRA 198 (454)
Q Consensus 181 l~~L~~~-G~-vlV~ThN~~ 198 (454)
+.+|.+. |. ++++|||.+
T Consensus 188 I~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 188 IRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHhhCCEEEEEECChH
Confidence 9999876 66 999999963
No 16
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.74 E-value=2.4e-18 Score=174.66 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=103.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhh--cccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSIS--GWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~--~~~~ 112 (454)
..++.-++|+|||||||||||++|+|.+++ ..|...+..... .....+.++++++. ....+|+.+++. ...+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 142 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSP-DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF 142 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence 456788999999999999999999999875 244333332221 12344567777766 345678888873 2222
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ....+.++..+++... .......+++++ +||+++|++|+||||+ +||+..+..++++|.
T Consensus 143 ~~~~~~~~~~~~~ll~~~~L~~~------~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~ 216 (340)
T PRK13536 143 GMSTREIEAVIPSLLEFARLESK------ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 216 (340)
T ss_pred CCCHHHHHHHHHHHHHHcCCchh------hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 22111 1233455555555321 122234555554 6889999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCCC
Q 012882 183 RLLSTGT-VLVATSNRA 198 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~ 198 (454)
++.+.|. ||++||+..
T Consensus 217 ~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 217 SLLARGKTILLTTHFME 233 (340)
T ss_pred HHHhCCCEEEEECCCHH
Confidence 9988777 888998854
No 17
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.73 E-value=6.7e-18 Score=159.30 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=99.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhhh---hcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKNQ---VAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~~---~~~~t~~e~l~~~~~~~ 114 (454)
.+++-++|+||||||||||+++|+|..++ ..| .+.+++.. ....+.++++.+.. ....|+.+++.......
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~ 100 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKE-SSG--SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL 100 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cce--EEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc
Confidence 46778999999999999999999999874 233 44443321 12233455555552 23457777763221111
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
......+++++..+++... .......+++++ +||+.+|++|+||||+ ++|+..+..+.++|.++.+
T Consensus 101 ~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (205)
T cd03226 101 DAGNEQAETVLKDLDLYAL------KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174 (205)
T ss_pred CccHHHHHHHHHHcCCchh------cCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 1222455666666666321 122234455554 6888999999999999 8999999999999999977
Q ss_pred CCc-EEEEecCC
Q 012882 187 TGT-VLVATSNR 197 (454)
Q Consensus 187 ~G~-vlV~ThN~ 197 (454)
+|. +|++||+.
T Consensus 175 ~~~tii~~sH~~ 186 (205)
T cd03226 175 QGKAVIVITHDY 186 (205)
T ss_pred CCCEEEEEeCCH
Confidence 776 89999984
No 18
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.73 E-value=1.4e-17 Score=158.29 Aligned_cols=149 Identities=15% Similarity=0.234 Sum_probs=99.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..+++-++|+||||||||||+++|+|.+++. .+.+.+++.. ...++.+.++.|. ....+|+.+++.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 102 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVA 102 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHH
Confidence 3467889999999999999999999998742 3455554321 1133456666655 334567777763
Q ss_pred cccc--CCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWIT--NLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~--~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.... .... ....+++++..+++... .......+++++ +||+.+|++|+||||+ ++|+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 176 (216)
T TIGR00960 103 FPLRIIGVPPRDANERVSAALEKVGLEGK------AHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD 176 (216)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 2111 1111 11334455555555321 122234555554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.+.|. +|++||+.
T Consensus 177 l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 177 IMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH
Confidence 9999999977776 89999984
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.6e-18 Score=162.66 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=104.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCC--C
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNL--P 115 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~--~ 115 (454)
...+.-+.|+||+|||||||+++++|...+. .+...+..... ......+.++.|+ +.+=+|+.+|+...+... .
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~-~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~ 103 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPT-SGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS 103 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhheehhhccccc
Confidence 4567779999999999999999999988742 34333332211 2223344555554 455567777773333322 2
Q ss_pred CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882 116 FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL 185 (454)
Q Consensus 116 ~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~ 185 (454)
.. ...++++++..++.+.. ...-+++++++ |||+.+|+||+||||+ .||..++..+.+.+..++
T Consensus 104 ~~e~~~~a~~~L~~VgL~~~~------~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 104 KAEARERAKELLELVGLAGFE------DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred hHhHHHHHHHHHHHcCCcchh------hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 22 24566667777664422 23344566665 7899999999999999 699999999999999998
Q ss_pred hC-Cc-EEEEecCCC
Q 012882 186 ST-GT-VLVATSNRA 198 (454)
Q Consensus 186 ~~-G~-vlV~ThN~~ 198 (454)
++ +. |+++|||..
T Consensus 178 ~~~~~TvllVTHdi~ 192 (248)
T COG1116 178 EETRKTVLLVTHDVD 192 (248)
T ss_pred HhhCCEEEEEeCCHH
Confidence 75 44 999999963
No 20
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.72 E-value=1.7e-17 Score=156.80 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
..++.-++|+||||||||||+++|+|..++ .. +.+.+++.. ....+.+.++.+. .....|+.+++......
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 99 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DS--GEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL 99 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCC-Cc--eEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence 346788999999999999999999999874 23 444443321 1223345555554 33456777776221111
Q ss_pred CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL 185 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~ 185 (454)
........+.++..+++.. ........+++++ ++++.+|++|+||||+ ++|+.++..+.++|.++.
T Consensus 100 ~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (208)
T cd03268 100 LGIRKKRIDEVLDVVGLKD------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173 (208)
T ss_pred cCCcHHHHHHHHHHcCCHH------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 1112344555666665532 1233344556554 6889999999999999 899999999999999998
Q ss_pred hCCc-EEEEecCC
Q 012882 186 STGT-VLVATSNR 197 (454)
Q Consensus 186 ~~G~-vlV~ThN~ 197 (454)
++|. +|++||+.
T Consensus 174 ~~~~tii~~tH~~ 186 (208)
T cd03268 174 DQGITVLISSHLL 186 (208)
T ss_pred HCCCEEEEEcCCH
Confidence 7776 88899884
No 21
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.71 E-value=8.8e-18 Score=167.99 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=103.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~ 112 (454)
.+++.-++|+|||||||||||++|+|.+++ ..|...+..... ...+.+.++++++. ..+.+|+.+++.. ..+
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~ 103 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY 103 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence 356778999999999999999999999874 244443333221 12345567777766 4556788888732 122
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ....+.++..+++... .......+++++ +||+++|++|+||||+ ++|+..+..+++++.
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~ 177 (301)
T TIGR03522 104 GMKGQLLKQRVEEMIELVGLRPE------QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177 (301)
T ss_pred CCCHHHHHHHHHHHHHHCCCchH------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 22211 2345566666665322 223345556554 6899999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCCC
Q 012882 183 RLLSTGT-VLVATSNRA 198 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~ 198 (454)
++.+ +. ||++||+..
T Consensus 178 ~~~~-~~tiii~sH~l~ 193 (301)
T TIGR03522 178 NIGK-DKTIILSTHIMQ 193 (301)
T ss_pred HhcC-CCEEEEEcCCHH
Confidence 9965 55 888888853
No 22
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.71 E-value=1.8e-17 Score=156.82 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=99.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..+++-++|+||||||||||+++|+|..++ ..| .+.+++. .....+.+.++.+.. ....|+.+++...
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~ 100 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSG--EVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG 100 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCc--eEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHH
Confidence 346777999999999999999999999874 233 4444321 123345566766652 3456777776321
Q ss_pred ccCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
....... ...++.++..+++... +......+++++ +||+.+|++|+||||+ ++|+..+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~ 174 (211)
T cd03225 101 LENLGLPEEEIEERVEEALELVGLEGL------RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174 (211)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1111111 1234455555555321 112233455554 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|.++.++|. +|++||+.
T Consensus 175 ~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 175 ELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred HHHHHHHHcCCEEEEEeCCH
Confidence 99999987777 89999984
No 23
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.71 E-value=2.7e-17 Score=156.43 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=99.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcc--c
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGW--I 111 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~ 111 (454)
.++.-++|+|+||||||||+++|+|..++ ..| .+.+.+. .....+.+.++.+. .....|+.+++... .
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 105 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAG--FATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL 105 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCc--eEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHH
Confidence 46778999999999999999999999874 233 4444321 12234455566555 34446777776221 1
Q ss_pred cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 112 TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 112 ~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
...... ...+++++..+++.. .+......+++++ +|++.+|++|+||||+ ++|+.++..+.++|
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 179 (218)
T cd03266 106 YGLKGDELTARLEELADRLGMEE------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179 (218)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHH------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 111111 123445555555532 2233445566554 7889999999999999 89999999999999
Q ss_pred HHHHhCCc-EEEEecCC
Q 012882 182 SRLLSTGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN~ 197 (454)
.++.++|. +|++||+.
T Consensus 180 ~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 180 RQLRALGKCILFSTHIM 196 (218)
T ss_pred HHHHHCCCEEEEEeCCH
Confidence 99987776 89999985
No 24
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4e-17 Score=154.47 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=97.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--HHHHHHHHHHHhhh--hhcccchhhhhhcc--ccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--MLKINEHMHRLWKN--QVAEKSLRSSISGW--ITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~~ 113 (454)
..+++-++|+|+||||||||+++|+|.+++ .. +.+.+++. .......+.++.|. .....|+.+++... ...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 99 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP-DS--GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG 99 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC
Confidence 346788999999999999999999999864 23 44554432 11223345555554 23446777776221 111
Q ss_pred CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882 114 LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR 183 (454)
Q Consensus 114 ~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~ 183 (454)
.... ...+++++..+++... .......+++++ ++++.+|++|+||||+ ++|+.++..+.+++..
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 100 LKKEEARRRIDEWLERLELSEY------ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred CChHHHHHHHHHHHHHcCChHH------HhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 1111 1234445555554321 122334455554 6888999999999999 8999999999999999
Q ss_pred HHhCCc-EEEEecCC
Q 012882 184 LLSTGT-VLVATSNR 197 (454)
Q Consensus 184 L~~~G~-vlV~ThN~ 197 (454)
+.++|. +|++||+.
T Consensus 174 ~~~~~~tii~~sH~~ 188 (210)
T cd03269 174 LARAGKTVILSTHQM 188 (210)
T ss_pred HHHCCCEEEEECCCH
Confidence 987776 88888874
No 25
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.71 E-value=3.3e-17 Score=155.88 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-H---------HHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-K---------INEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~---------~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+||||||||||+++|+|.+++. . +.+.+++... . ..+.+.++.+. .....|+.+++
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 103 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-S--GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV 103 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC-c--eeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHH
Confidence 3567889999999999999999999998742 3 4454433110 0 12335555554 33456777776
Q ss_pred hccc--cCCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWI--TNLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~--~~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ..... ....+++++..+++.. ........+++++ +||+.+|+||+||||+ ++|+..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (218)
T cd03255 104 ELPLLLAGVPKKERRERAEELLERVGLGD------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177 (218)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCch------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence 3211 11111 0123445555555532 1222334555554 7889999999999999 89999999
Q ss_pred HHHHHHHHHHh-CCc-EEEEecCC
Q 012882 176 ALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
.+.++|.++.+ .|+ ||++||+.
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCH
Confidence 99999999977 476 88999984
No 26
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.4e-17 Score=157.20 Aligned_cols=149 Identities=12% Similarity=0.094 Sum_probs=98.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcc--
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGW-- 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~-- 110 (454)
..++.-++|+|+||||||||+++|+|.+++ .. +.+.+++. .....+.+.++.+. .....|+.+++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TS--GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR 99 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence 346778999999999999999999998864 23 34444331 11233445555554 23445777766221
Q ss_pred ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 111 ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 111 ~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
....... ...++.++..+++... .......+++++ +|++.+|++|+||||+ ++|+..+..+.++
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (220)
T cd03265 100 LYGVPGAERRERIDELLDFVGLLEA------ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY 173 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence 1111111 1344555666655321 122234455554 6889999999999999 8999999999999
Q ss_pred HHHHHhC-Cc-EEEEecCC
Q 012882 181 VSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~~-G~-vlV~ThN~ 197 (454)
|.++.++ |. +|++||+.
T Consensus 174 l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 174 IEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHHHHHhcCCEEEEEeCCH
Confidence 9999875 76 99999985
No 27
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=5.7e-17 Score=153.92 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=102.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
.+.+.-+.|+||+||||||||+++.+...| ..+...+...+. ..--.+.++++.|. +.+.+|+.||+..
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 456777999999999999999999998865 333333332111 11123445566665 5677888888732
Q ss_pred --cccCCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 110 --WITNLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 110 --~~~~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.....+. .....+.++..+++..... .....++++++ |||+.+|+||+.|||| .||..++..+
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~-----~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V 181 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLL-----KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhc-----cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHH
Confidence 1222222 1244556666656642111 12344556664 7899999999999999 6999999999
Q ss_pred HHHHHHHHhC-Cc-EEEEecCC
Q 012882 178 SGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.++|..+.++ |+ +||+|||.
T Consensus 182 ~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 182 LELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHhcCCEEEEEcCCH
Confidence 9999999865 76 99999995
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=7.7e-17 Score=149.56 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=104.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechh--------HHHHHHHHHHHhhh-hhcccchhhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEA--------MLKINEHMHRLWKN-QVAEKSLRSSI 107 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~-~~~~~t~~e~l 107 (454)
..+..+-..|+||+|||||||+++|..... +...-.+.|.+.+. ...++++++.+.|+ ..-.+|+.+|+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNV 108 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV 108 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHH
Confidence 344567799999999999999999976432 11223344544331 34667777777766 22236777776
Q ss_pred hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
...+....... +.+|..+....+++ ...+.+..-+-.|++++ |||+-+|+||++|||+ .|||.+..
T Consensus 109 ayG~r~~g~~~~~ldeiVe~sLk~AaLWd--EVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~ 186 (253)
T COG1117 109 AYGLRLHGIKDKELDEIVESSLKKAALWD--EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTL 186 (253)
T ss_pred HHhHHhhccchHHHHHHHHHHHHHhHhHH--HhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHH
Confidence 33322211111 33444444444432 12334444455566665 7999999999999999 79999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.+++.+|.+.=+|+|+|||+
T Consensus 187 kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 187 KIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred HHHHHHHHHHhccEEEEEeCCH
Confidence 9999999999777799999996
No 29
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.70 E-value=4.6e-17 Score=154.41 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..+++-++|+||||||||||+++|+|.+++ .. +++.+++.- ....+.+.++.+. .....|+.+++.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SR--GQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVA 101 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHH
Confidence 356778999999999999999999999864 23 445443311 1233445555554 234467777763
Q ss_pred ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
... ...... ...++.++..+++... .......+++++ +||+.+|++|+||||+ ++|+.++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 102 LPLEVRGKKEREIQRRVGAALRQVGLEHK------ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 211 111111 1234455555555321 122234555554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.++|. +|++||+.
T Consensus 176 l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 176 ILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999977776 89999974
No 30
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.70 E-value=6.1e-17 Score=153.46 Aligned_cols=148 Identities=16% Similarity=0.235 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
.+++-++|+|+||||||||+++|+|.+++. .+.+.+++. .....+.+.++.|. .....|+.+++..
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~ 101 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence 467789999999999999999999998642 344444321 11234455666555 3444677777632
Q ss_pred ccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 110 WIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 110 ~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
... ..... ...+++++..+++... .......+++++ +||+.+|++|+||||+ ++|+.++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 175 (214)
T cd03292 102 ALEVTGVPPREIRKRVPAALELVGLSHK------HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175 (214)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHHH------hhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 211 11111 1233445555554321 122234455554 6889999999999999 8999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.++|.++.++|. +|++||+.
T Consensus 176 ~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 176 MNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHHHcCCEEEEEeCCH
Confidence 999999977776 88888874
No 31
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.70 E-value=3.3e-17 Score=155.34 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-HHHHHHHHHHHhhhhh----cccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKINEHMHRLWKNQV----AEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~~~~~~~i~~~~~~~~----~~~t~~e~l~~~~~~~ 114 (454)
..+++-++|+||||||||||+++|+|..++ .. +.+.+++. ....+..+.++.|... ...|+.+++.......
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~--G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~ 98 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TS--GSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH 98 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CC--CEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence 356778999999999999999999999864 23 45555432 1133455666666521 2357888773221110
Q ss_pred ------CC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 115 ------PF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 115 ------~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.. .....+.++..+++... .......+++++ +||+.+|++|+||||+ +||+..+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 172 (213)
T cd03235 99 KGLFRRLSKADKAKVDEALERVGLSEL------ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY 172 (213)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCHHH------HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 01 11334555555555321 111223445444 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|.++.++|. +|++||+.
T Consensus 173 ~~l~~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 173 ELLRELRREGMTILVVTHDL 192 (213)
T ss_pred HHHHHHHhcCCEEEEEeCCH
Confidence 99999987776 89999984
No 32
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.70 E-value=3.3e-17 Score=164.00 Aligned_cols=151 Identities=14% Similarity=0.076 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~ 112 (454)
..++.-++|+||||||||||+++|+|.+++ ..|...+..... .......+++++|. ....+|+.+++.. ...
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 105 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMISP-DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF 105 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence 356778999999999999999999999864 233333322111 12234556666665 3345688887732 111
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...++.++..+++... .......+++++ +||+.+|++|+||||+ ++|+..+..+.++|.
T Consensus 106 ~~~~~~~~~~~~~ll~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 179 (303)
T TIGR01288 106 GMSTREIEAVIPSLLEFARLESK------ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179 (303)
T ss_pred CCCHHHHHHHHHHHHHHCCChhH------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 11111 1233445555554321 122334556554 6889999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCC
Q 012882 183 RLLSTGT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~ 197 (454)
++.++|. ||++||+.
T Consensus 180 ~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 180 SLLARGKTILLTTHFM 195 (303)
T ss_pred HHHhCCCEEEEECCCH
Confidence 9987777 89999985
No 33
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.70 E-value=7.4e-17 Score=150.37 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=98.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhh---hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ---VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~---~~~~t~~e~l~ 108 (454)
..+++-++|+||||||||||+++|+|..++. . +.+.+.+. .......++++.+.. ....|+.+++.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~ 91 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQ-S--GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVA 91 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHH
Confidence 4567889999999999999999999988742 3 34444321 112334455665542 22346777763
Q ss_pred ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.......... ..+++++..+++... .......+++++ +||+.+|++|+||||+ ++|+..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 92 FGPLNLGLSEAEVERRVREALTAVGASGL------RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCchhh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 2111111111 233445555555321 122234455544 6889999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
+.++|.++.++|. +|++||+..
T Consensus 166 ~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 166 MLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999987776 899999853
No 34
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=7.7e-17 Score=152.09 Aligned_cols=154 Identities=15% Similarity=0.112 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
..+++-++|+|+||||||||+++|+|.+++. . +.+.+++. ....++.+.++.+. .....|+.+++.....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~--G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 100 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPD-A--GEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQR 100 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--cEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHH
Confidence 3567789999999999999999999998742 3 44554431 11223334444433 2344577777622111
Q ss_pred CC-CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882 113 NL-PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR 183 (454)
Q Consensus 113 ~~-~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~ 183 (454)
.. ......++.++..+++.... ......+++++ +|++.+|++|+||||+ ++|+.++..+.++|.+
T Consensus 101 ~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 101 LHGPGDDEALWEALAQVGLAGFE------DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred hcCccHHHHHHHHHHHcCCHHHh------hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 11 12234556666666664321 11233444443 6889999999999999 8999999999999999
Q ss_pred HHhCCc-EEEEecCCCccch
Q 012882 184 LLSTGT-VLVATSNRAPWDL 202 (454)
Q Consensus 184 L~~~G~-vlV~ThN~~P~dL 202 (454)
+.++|. +|++||+...-+.
T Consensus 175 ~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 175 HAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHCCCEEEEEecChhhhcc
Confidence 977666 8999998644433
No 35
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=3.6e-17 Score=155.10 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=97.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
..+++-++|+||||||||||+++|+|.+++. . +.+.+++.. ....+.+.++.|. .....|+.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~--G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPD-S--GEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKL 99 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--eEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHH
Confidence 3467789999999999999999999998642 3 344443211 1112345555554 33446777776321111
Q ss_pred CCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 114 LPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 114 ~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
.... ...+++++..+++.. ........+++++ +||+.+|++|+||||+ ++|+.++..+.++|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03259 100 RGVPKAEIRARVRELLELVGLEG------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL 173 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCChh------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1111 123445555555432 1222334555554 6889999999999999 89999999999999
Q ss_pred HHHHh-CCc-EEEEecCC
Q 012882 182 SRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~-~G~-vlV~ThN~ 197 (454)
.++.+ .|. ||++||+.
T Consensus 174 ~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 174 KELQRELGITTIYVTHDQ 191 (213)
T ss_pred HHHHHHcCCEEEEEecCH
Confidence 99976 476 88999984
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=3.6e-17 Score=157.53 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=98.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..+++-++|+||||||||||+++|+|.+++. .| .+.+++.. ....+.+.++.|. ....+|+.+++.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G--~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 99 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SG--EVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVA 99 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHH
Confidence 3567889999999999999999999998742 33 44443211 1233445666655 344567777763
Q ss_pred ccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
...... .... ..++.++..+++.. ........+++++ +||+.+|+||+||||+ ++|+..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 100 FPLREHTRLSEEEIREIVLEKLEAVGLRG------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 221110 1111 23344555555422 1122334556554 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.++|.++.++ |. ||++||+.
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCH
Confidence 999999999863 66 89999984
No 37
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.69 E-value=8.1e-17 Score=152.52 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=97.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
..+++-++|+||||||||||+++|+|..++ ..|...+..... .......+.++.+. .....|+.+++....
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 101 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAP 101 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHH
Confidence 456788999999999999999999999874 234333322211 11233455666555 234467777763211
Q ss_pred ---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 112 ---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 112 ---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
...... ...++.++..+++.. .+......+++++ +|++.+|++|+||||+ ++|+.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 175 (213)
T cd03262 102 IKVKGMSKAEAEERALELLEKVGLAD------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175 (213)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHh------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 111111 123344444444422 1122233445444 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|.++.+.|. +|++||+.
T Consensus 176 ~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 176 DVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCH
Confidence 99999987776 88888874
No 38
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.6e-17 Score=156.54 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..++.-++|+||||||||||+++|+|.+++ .. +.+.+++. .....+.+.+++|. .....|+.+++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 100 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEP-TS--GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVL 100 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CC--ceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHH
Confidence 356788999999999999999999999864 23 34444321 11234456666665 334567877763
Q ss_pred ccccC----------CC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882 109 GWITN----------LP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T 168 (454)
Q Consensus 109 ~~~~~----------~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~ 168 (454)
..... .. .....+.+++..+++... .......+++++ +||+.+|+||+||||+ +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 174 (241)
T cd03256 101 SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK------AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174 (241)
T ss_pred hhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh------hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 21110 00 011234455555555321 111223444443 6888999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 169 VDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 169 lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+|+..+..+.++|.++.++ |. ||++||+.
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 175 LDPASSRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999999999764 66 89999985
No 39
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.69 E-value=2.8e-17 Score=169.97 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=103.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
...+.-++|+||||||||||+++|+|.+++ ..|...+..... .....+.++++.|+ ....+|+.+++......
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~ 104 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP 104 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence 346788999999999999999999999874 244333322111 12345567777665 34567888887432211
Q ss_pred ----CC-CC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 114 ----LP-FD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 114 ----~~-~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.. .. ...+++++..+++... .......+++++ +||+++|+||+||||+ +||+..+..+
T Consensus 105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~------~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l 178 (402)
T PRK09536 105 HRSRFDTWTETDRAAVERAMERTGVAQF------ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT 178 (402)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 11 11 2345566666665322 122234555554 7889999999999999 8999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
.++|.++.++|. +|++||+..
T Consensus 179 ~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 179 LELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHHHHHHHhcCCEEEEEECCHH
Confidence 999999987776 888899853
No 40
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.68 E-value=6.5e-17 Score=155.67 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK-INEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~-~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+||||||||||+++|+|.+++ ..| .+.+++.. .. ....+.++.|. ....+|+.+++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~ 99 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSG--SVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVA 99 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCc--eEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHH
Confidence 346778999999999999999999999874 233 44443211 11 12235555554 34456788776321
Q ss_pred ccC--CC---------CC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882 111 ITN--LP---------FD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T 168 (454)
Q Consensus 111 ~~~--~~---------~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~ 168 (454)
... .. .. ...+++++..+++.. ........+++++ +||+.+|++|+||||+ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 100 AQARTGSGLLLARARREEREARERAEELLERVGLAD------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HhhccccccccccccccHHHHHHHHHHHHHHcCccc------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 111 00 01 123445555555522 1222334555554 6889999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 169 VDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 169 lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+|+.++..+.++|..+.+.|. +|++||+.
T Consensus 174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 174 LNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 999999999999999987776 88999974
No 41
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.68 E-value=5.6e-17 Score=154.96 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHH--HHHHHHHHhhh--hhcccchhhhhhccccCCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLK--INEHMHRLWKN--QVAEKSLRSSISGWITNLPF 116 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~--~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~ 116 (454)
.++.-++|.|+||+|||||+++|+|.+++ .. +.+.+++.... ....+.++.+. .....|+.+++.........
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~ 100 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILRP-TS--GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL 100 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCC
Confidence 46788999999999999999999999874 23 34444321100 01234444443 23345666665221111112
Q ss_pred ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC
Q 012882 117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG 188 (454)
Q Consensus 117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G 188 (454)
+...+..++..+++.. ........+++++ +|++.+|++|+||||+ ++|+.++..+.++|.++.++|
T Consensus 101 ~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~ 174 (223)
T TIGR03740 101 PDSRIDEVLNIVDLTN------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG 174 (223)
T ss_pred CHHHHHHHHHHcCCcH------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 2344555555555532 1223344555554 6889999999999999 899999999999999998777
Q ss_pred c-EEEEecCC
Q 012882 189 T-VLVATSNR 197 (454)
Q Consensus 189 ~-vlV~ThN~ 197 (454)
. +|++||+.
T Consensus 175 ~tiii~sH~~ 184 (223)
T TIGR03740 175 ITVILSSHIL 184 (223)
T ss_pred CEEEEEcCCH
Confidence 6 88888874
No 42
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.68 E-value=8.2e-17 Score=155.66 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..+++-++|+||||||||||+++|+|..++ .. +.+.+++.. ......++++.+. .....|+.+++.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 101 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVEP-SS--GSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVL 101 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCC-Cc--cEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHh
Confidence 356788999999999999999999999864 23 445443311 1234456666655 334567777773
Q ss_pred ccccC----------CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882 109 GWITN----------LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T 168 (454)
Q Consensus 109 ~~~~~----------~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~ 168 (454)
..... .... ...+++++..+++... .......+++++ +||+.+|++|+||||+ +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 102 HGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK------AYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred hcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 21110 0001 1234455555555321 112233445444 6888999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 169 VDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 169 lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+|+..+..+.++|.++.++ |. +|++||+.
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999999999999754 66 88999984
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=3.5e-17 Score=156.10 Aligned_cols=149 Identities=14% Similarity=0.097 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-HHHHHHHHHHhhh--hhcccchhhhhhcc--ccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LKINEHMHRLWKN--QVAEKSLRSSISGW--ITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~~~ 114 (454)
..+++-++|+||||||||||+++|+|..++ .. +.+.+.+.. ....+.+.++.+. .....|+.+++... ....
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERP-TS--GEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 346778999999999999999999998864 23 344443211 1122345555554 23445777766221 1111
Q ss_pred CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 115 PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 115 ~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
... ...++.++..+++... .......+++++ +||+.+|++|+||||+ ++|+.++..+.++|.++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 104 PKAEARERAEELLELVGLSGF------ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI 177 (220)
T ss_pred CHHHHHHHHHHHHHHcCChhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 111 1234455555555321 122234455554 6889999999999999 89999999999999998
Q ss_pred Hh-CCc-EEEEecCC
Q 012882 185 LS-TGT-VLVATSNR 197 (454)
Q Consensus 185 ~~-~G~-vlV~ThN~ 197 (454)
.+ .|. +|++||+.
T Consensus 178 ~~~~~~tiii~sH~~ 192 (220)
T cd03293 178 WRETGKTVLLVTHDI 192 (220)
T ss_pred HHHcCCEEEEEecCH
Confidence 65 466 88899874
No 44
>PRK10908 cell division protein FtsE; Provisional
Probab=99.68 E-value=1.2e-16 Score=152.55 Aligned_cols=149 Identities=12% Similarity=0.154 Sum_probs=97.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H-------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M-------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~-------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..+++-++|+||||||||||+++|+|..++. . +.+.+++. . ....+.+.++.|. .....++.+++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPS-A--GKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVA 101 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHH
Confidence 3567889999999999999999999998742 3 34444321 1 1133455666655 234567777763
Q ss_pred ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.......... ..++.++..+++... .......+++++ +|++.+|++|+||||+ ++|+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (222)
T PRK10908 102 IPLIIAGASGDDIRRRVSAALDKVGLLDK------AKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 (222)
T ss_pred hHHHhcCCCHHHHHHHHHHHHHHcCChhh------hhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 2211111111 123445555554321 112223444444 6888999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.+++..+.++|. +|++||+.
T Consensus 176 l~~~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 176 ILRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH
Confidence 9999999977666 88999984
No 45
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.68 E-value=1.4e-16 Score=150.10 Aligned_cols=148 Identities=13% Similarity=0.124 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
.+++-++|+||||||||||+++++|.+++ ..| .+.+.+.. ....+.++++.+. .....|+.+++.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~ 98 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSG--QVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD 98 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCe--EEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHH
Confidence 46788999999999999999999999874 233 34443211 0122344555444 334467777662
Q ss_pred cccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.... ..... ...++.++..+++... .......+++++ +||+.+|++|+||||+ ++|+.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~ 172 (206)
T TIGR03608 99 LGLKYKKLSKKEKREKKKEALEKVGLNLK------LKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDE 172 (206)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCchhh------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHH
Confidence 2111 11111 1334455555555221 122234455554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.++|. +|++||+.
T Consensus 173 l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 173 VLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999987776 88888885
No 46
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.68 E-value=1.6e-16 Score=149.24 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=98.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
..++.-++|+||||||||||+++|+|..++. . +.+.+.+.. ......+.++.+. .....|+.+++.....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 99 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPD-S--GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAA 99 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-c--cEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHH
Confidence 3467789999999999999999999988642 3 344443211 1122334444443 2234566666522111
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
........+++++..+++.... ......+++++ +|++.+|++|+||||+ ++|+.++..+.+++..+
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 100 IHGGAQRTIEDALAAVGLTGFE------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred HcCCcHHHHHHHHHHcCCHHHh------cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 1111123345555555553211 11223445443 6888999999999999 89999999999999998
Q ss_pred HhCCc-EEEEecCCCccchhcC
Q 012882 185 LSTGT-VLVATSNRAPWDLNQD 205 (454)
Q Consensus 185 ~~~G~-vlV~ThN~~P~dLy~~ 205 (454)
.++|. +|++||+. .+++++
T Consensus 174 ~~~~~tii~~sH~~--~~~~~~ 193 (198)
T TIGR01189 174 LARGGIVLLTTHQD--LGLVEA 193 (198)
T ss_pred HhCCCEEEEEEccc--ccccce
Confidence 77776 88888874 444443
No 47
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.5e-16 Score=152.94 Aligned_cols=149 Identities=11% Similarity=0.132 Sum_probs=98.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..+++-++|+||||||||||+++|+|.+++ .. +.+.+.+.- ....+.+.++++. ....+|+.+++.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 104 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLERP-TS--GSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVA 104 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHH
Confidence 456788999999999999999999999874 23 344443211 1123455666655 334567777763
Q ss_pred ccccCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWITNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
......... ...+++++..+++... .......+++++ +||+.+|++|+||||+ ++|+..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 105 LPLEIAGVPKAEIEERVLELLELVGLEDK------ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhh------hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 211111111 1234455555555321 122234455554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhC-Cc-EEEEecCC
Q 012882 177 LSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+.++|.++.++ |. ||++||+.
T Consensus 179 l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 179 ILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999765 76 88899874
No 48
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=1.6e-17 Score=152.50 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=111.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------H-HHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------M-LKINEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~-~~~~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
...++.-|+|+||||+||||.+.++.|.+++. .+ ++.+++. | ...+..++|++|+ .+..+|+.+|+..
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d-~G--~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~ 102 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SG--KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA 102 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecC-Cc--eEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHH
Confidence 34567889999999999999999999999752 34 4444332 1 2344567899988 6888999999854
Q ss_pred cccCCCCC----h--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 110 WITNLPFD----S--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 110 ~~~~~~~~----~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
-+.....+ . ...+++++.+.+.... ...+..++++. |||+.+|+.++||||+ +.||-+..
T Consensus 103 vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr------~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~ 176 (243)
T COG1137 103 VLEIREKDLKKAERKEELDALLEEFHITHLR------DSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176 (243)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHhchHHHh------cCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHH
Confidence 43332222 2 2355788888775422 12233444443 6788999999999999 99999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.+++..|.++|. |+|+-||.
T Consensus 177 dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 177 DIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHHHHHHHHhCCceEEEccccH
Confidence 99999999999999 99999995
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.67 E-value=1.2e-16 Score=153.45 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK-INEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~-~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..++.-++|+|+||||||||+++|+|.+++ ..| .+.+++.. .. ....+.++.+. .....|+.+++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSG--KILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV 99 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHH
Confidence 346778999999999999999999999874 233 44443211 01 12234555554 33445777776321
Q ss_pred c--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 I--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
. ...... ....+.++..+++.. ........+++++ +|++.+|++|+||||+ ++|+.++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~ 173 (232)
T cd03218 100 LEIRGLSKKEREEKLEELLEEFHITH------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173 (232)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 1 111111 123344455544422 1122233455444 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|.++.+.|. +|++||+.
T Consensus 174 ~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 174 KIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred HHHHHHHHCCCEEEEEeCCH
Confidence 99999987776 88888874
No 50
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=5.1e-17 Score=166.02 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=102.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-- 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-- 112 (454)
..++-++|+||||||||||+++|+|..++ ..+.+.+++.. ....+.++++.|. ..+.+|+.+++.....
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR 104 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence 45677999999999999999999999874 23455444321 1122456666665 4566788888732221
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...+++++..+++.. ........+++++ |||+.+|+||+||||+ +||+..+..+.+.|.
T Consensus 105 ~~~~~~~~~~~~~~l~~~gL~~------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~ 178 (356)
T PRK11650 105 GMPKAEIEERVAEAARILELEP------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQ 178 (356)
T ss_pred CCCHHHHHHHHHHHHHHcCChh------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11111 134455666656532 1233345666665 7999999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
.+.++ |. +|++||+.
T Consensus 179 ~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 179 RLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred HHHHhcCCEEEEEeCCH
Confidence 99765 77 99999985
No 51
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=2.6e-16 Score=148.02 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
..+++-++|+|+||||||||+++|+|..++ .. +.+.+.+. .....+.+.++.+. .....|+.+++.....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~--G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~ 100 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EK--GEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIH 100 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CC--eeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHh
Confidence 356788999999999999999999999864 23 34544321 12233445555544 2245677777632211
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
. .......++++..+++... .......+++++ +|++.+|++|+||||+ ++|+.++..+.++|.++
T Consensus 101 ~-~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 101 F-SPGAVGITELCRLFSLEHL------IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH 173 (200)
T ss_pred c-CcchHHHHHHHHHcCCchh------hhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 1 1112344555555544221 111223344443 6888999999999999 89999999999999998
Q ss_pred HhCCc-EEEEecCCCc
Q 012882 185 LSTGT-VLVATSNRAP 199 (454)
Q Consensus 185 ~~~G~-vlV~ThN~~P 199 (454)
.+.|. +|++||+...
T Consensus 174 ~~~~~tiii~sh~~~~ 189 (200)
T PRK13540 174 RAKGGAVLLTSHQDLP 189 (200)
T ss_pred HHcCCEEEEEeCCchh
Confidence 77776 8889998643
No 52
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=2.1e-16 Score=149.50 Aligned_cols=149 Identities=18% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
..+++-++|+|+||||||||+++++|..++ .. +.+.+++.. ...+..++++.+. .....|+.+++.......
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 101 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AA--GTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence 356788999999999999999999998864 23 344443321 1133445555433 223467777663211111
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
......+++++..+++.... ......+++++ ++++.+|++|+||||+ ++|+.....+.++|.++.+
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (207)
T PRK13539 102 GGEELDIAAALEAVGLAPLA------HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA 175 (207)
T ss_pred CCcHHHHHHHHHHcCCHHHH------cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 11233455666666664311 11123344443 6888999999999999 8999999999999999887
Q ss_pred CCc-EEEEecCC
Q 012882 187 TGT-VLVATSNR 197 (454)
Q Consensus 187 ~G~-vlV~ThN~ 197 (454)
+|. +|++||+.
T Consensus 176 ~~~tiii~sH~~ 187 (207)
T PRK13539 176 QGGIVIAATHIP 187 (207)
T ss_pred CCCEEEEEeCCc
Confidence 777 88899985
No 53
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.67 E-value=2.2e-16 Score=148.65 Aligned_cols=150 Identities=17% Similarity=0.147 Sum_probs=99.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
..+++-++|+|+||+|||||+++|+|..++ ..+...+..+.. .....+.+.++.+. .....|+.+++.....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-- 99 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA-- 99 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcc--
Confidence 346788999999999999999999999874 233333222211 12233445555543 2234677777632211
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
.......++++..+++.... ......+++++ ++++.+|++|+||||+ ++|+.....+.++|.++.+
T Consensus 100 ~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 173 (201)
T cd03231 100 DHSDEQVEEALARVGLNGFE------DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173 (201)
T ss_pred cccHHHHHHHHHHcCChhhh------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 11334556666666664321 11233444443 6888999999999999 8999999999999999877
Q ss_pred CCc-EEEEecCCC
Q 012882 187 TGT-VLVATSNRA 198 (454)
Q Consensus 187 ~G~-vlV~ThN~~ 198 (454)
+|. +|++||+..
T Consensus 174 ~g~tiii~sH~~~ 186 (201)
T cd03231 174 RGGMVVLTTHQDL 186 (201)
T ss_pred CCCEEEEEecCch
Confidence 776 888888754
No 54
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.67 E-value=4.9e-17 Score=165.14 Aligned_cols=151 Identities=14% Similarity=0.151 Sum_probs=100.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|..++. .|...+...... ...++.++++.|. .....|+.+++...
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~-~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~ 106 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHH
Confidence 3467789999999999999999999998742 343333322211 1223456666655 34456777776322
Q ss_pred cc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 IT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.. ..... ...+.+++..+++... .......+++++ |||+.+|++|++|||+ +||+.++..+.
T Consensus 107 ~~~~~~~~~~~~~~v~e~l~~vgL~~~------~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~ 180 (343)
T TIGR02314 107 LELDNTPKDEIKRKVTELLALVGLGDK------HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 11111 1234455555555321 222344566665 7999999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|..+.++ |. +|++||+.
T Consensus 181 ~lL~~l~~~~g~tiiliTH~~ 201 (343)
T TIGR02314 181 ELLKEINRRLGLTILLITHEM 201 (343)
T ss_pred HHHHHHHHhcCCEEEEEeCCH
Confidence 999999875 77 99999985
No 55
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.8e-16 Score=152.57 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=97.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------H---HH-HHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------L---KI-NEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~---~~-~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+||||||||||+++|+|.+++ . .+.+.+++.- . .. ++.+.++.|. ..+.+|+.+++
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 108 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-T--SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENV 108 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC-C--ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHH
Confidence 346778999999999999999999999864 2 3445444311 0 11 1335555555 33446777776
Q ss_pred hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ...... ...+++++..+++.. ........+++++ +|++.+|+||+||||+ ++|+..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (233)
T PRK11629 109 AMPLLIGKKKPAEINSRALEMLAAVGLEH------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182 (233)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCch------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 2211 111111 123445555555532 1122334455554 6888999999999999 89999999
Q ss_pred HHHHHHHHHHh-CCc-EEEEecCC
Q 012882 176 ALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
.+.++|.++.+ .|. ||++||+.
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCH
Confidence 99999999975 476 89999974
No 56
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=8.8e-17 Score=155.31 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=98.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
..+++-++|+|+||||||||+++|+|.+++ .. +.+.+++. ....++.+.++.+. .....|+.+++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 100 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TS--GDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF 100 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHh
Confidence 346788999999999999999999999864 23 34444331 12234456666655 3345677777632
Q ss_pred ccc---CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 110 WIT---NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 110 ~~~---~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
... ..... ...+.+++..+++... .......+++++ +|++.+|+||+||||+ ++|+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 101 GPLRVRGASKEEAEKQARELLAKVGLAER------AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChHH------HhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111 11111 1233445555555321 112223444443 6888999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.++|. +|++||+.
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~ 196 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEI 196 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999987776 89999985
No 57
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.9e-17 Score=163.68 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=115.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-H---HHHHHHHHHHhhh--hhcccchhhhhhccccC-
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-M---LKINEHMHRLWKN--QVAEKSLRSSISGWITN- 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~---~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~- 113 (454)
..+.-+.|+|||||||||||++|+|...+ ..+++.+.+- + .-..+.++.+.|. +++.+|+.+|+...+..
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 45667999999999999999999998864 2344444321 1 1223456666665 67777888877333222
Q ss_pred -CCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 114 -LPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 114 -~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.+... .+++++++.+++.+ .+.+...++++++ |||+++|++++||||. .||...+..+...|.
T Consensus 104 ~~~k~ei~~rV~eva~~L~l~~------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 104 GVPKAEIDKRVKEVAKLLGLEH------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred CCchHHHHHHHHHHHHHcCChh------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence 22222 44455555555532 3344455666665 7999999999999999 799999999999999
Q ss_pred HHHhC-Cc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882 183 RLLST-GT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD 233 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D 233 (454)
.+.++ |. +|++|||...+....+++ . +...+++..++++.+
T Consensus 178 ~lh~~l~~T~IYVTHDq~EAmtladri---------~-Vm~~G~i~Q~g~p~e 220 (338)
T COG3839 178 KLHERLGTTTIYVTHDQVEAMTLADRI---------V-VMNDGRIQQVGTPLE 220 (338)
T ss_pred HHHHhcCCcEEEEcCCHHHHHhhCCEE---------E-EEeCCeeeecCChHH
Confidence 99875 66 999999965444444432 1 223556666665543
No 58
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.67 E-value=7.3e-17 Score=155.73 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=93.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHh-hh--hhcccchhhhhhcc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLW-KN--QVAEKSLRSSISGW 110 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~-~~--~~~~~t~~e~l~~~ 110 (454)
...+++-++|+|+||||||||+++|+|.+++ ..| .+.+.+.. ......+.++. +. .....|+.+++...
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~ 119 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSG--EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLL 119 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-Cce--EEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHH
Confidence 3456788999999999999999999998864 233 44333211 12233444443 22 23445666665211
Q ss_pred --ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 --ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 --~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
....... ...++.++..+++... .......+++++ ++|+.+|++|+||||+ ++|+..+..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 120 AAIYDLPPARFKKRLDELSELLDLEEL------LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 1111111 1223334444444221 112234455554 6888999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. +|++||+.
T Consensus 194 ~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 194 NFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred HHHHHHHhcCCCEEEEEecCH
Confidence 999999764 55 88999984
No 59
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.67 E-value=4.5e-17 Score=166.19 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=101.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H--HHHHHHHHHHhhh--hhcccchhhhhhccccC-
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M--LKINEHMHRLWKN--QVAEKSLRSSISGWITN- 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~--~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~- 113 (454)
..+.-+.|+|||||||||||++|+|..++. .| .+.+++. . ....+.++++.|. .++.+|+.+|+......
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~-~G--~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AG--TIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR 104 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCC-ce--EEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence 457789999999999999999999998742 33 4444321 1 1123446666665 45667888887322211
Q ss_pred -CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 114 -LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 114 -~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.... ...+++++..+++.. ........+++++ |||+.+|++|+||||+ ++|...+..+.+.|.
T Consensus 105 ~~~~~~~~~~~~~~l~~l~L~~------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 178 (353)
T TIGR03265 105 GMGRAEVAERVAELLDLVGLPG------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR 178 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCCc------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 1111 134455566555532 2233445566665 7899999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 179 ~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 179 QLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred HHHHhcCCEEEEEcCCH
Confidence 99765 76 99999985
No 60
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.67 E-value=1.6e-16 Score=151.43 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=95.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LK-INEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~-~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+||||||||||+++|+|..++. .| .+.+++. . .. ....+.++.+. ....+|+.+++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SG--SIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG 99 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--eEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHH
Confidence 3467889999999999999999999998742 33 4444321 1 11 12335566555 34456777776221
Q ss_pred ccCCCC--ChHHHHHHHHHH-hhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 111 ITNLPF--DSKVMEWVAAEE-KYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 111 ~~~~~~--~~~~~e~ll~~~-~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
...... .....+.++..+ .+.. ........+++++ +||+.+|++|+||||+ ++|+..+..+.+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 173 (222)
T cd03224 100 AYARRRAKRKARLERVYELFPRLKE------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173 (222)
T ss_pred hhhcCchhHHHHHHHHHHHHHhhhh------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence 111111 112223333333 1211 1122233455544 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|.++.++|. +|++||+.
T Consensus 174 ~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 174 AIRELRDEGVTILLVEQNA 192 (222)
T ss_pred HHHHHHHCCCEEEEEeCCH
Confidence 9999987776 88888873
No 61
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1e-16 Score=155.93 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=102.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-HHHH------HHHHHHHhhh--hhcccchhhhhhc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKI------NEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~~~~------~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
..+.++-+.|+||||||||||+++|+|...| ..++|.|++- +.+. .++++.+.|+ +.+.+|+.+|+..
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p---~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAF 100 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETP---DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF 100 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCC---CCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhh
Confidence 3456788999999999999999999998864 3456666553 1111 2345555554 5667777777732
Q ss_pred cccCC---C---CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 110 WITNL---P---FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 110 ~~~~~---~---~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.+... + ....++++++...++.+.. ......+++++ |||+.+|++|+||||. .||..-+.
T Consensus 101 Gl~~~~~~p~~~~~r~rv~elL~lvqL~~la------~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~ 174 (345)
T COG1118 101 GLKVRKERPSEAEIRARVEELLRLVQLEGLA------DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174 (345)
T ss_pred cccccccCCChhhHHHHHHHHHHHhcccchh------hcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence 22111 1 1124555555555553211 11223344444 6888999999999999 69999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.|.+-|+++.++ |+ ++++|||.
T Consensus 175 ~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 175 ELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHHHHHHhhCceEEEEeCCH
Confidence 999999999876 77 99999995
No 62
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=3.3e-16 Score=146.74 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--HHHHHHHHHHhhh--hhcccchhhhhhccccCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--LKINEHMHRLWKN--QVAEKSLRSSISGWITNLP 115 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~ 115 (454)
..++.-++|+|+||||||||+++|+|..++ ..| .+.+.+.. ......+.++.+. .....|+.+++...... .
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~-~ 98 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSG--NIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI-Y 98 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCc--EEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh-c
Confidence 346788999999999999999999998874 233 44443321 1111223344433 22345666665221110 0
Q ss_pred CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882 116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~ 187 (454)
......+.++..+++.. ........+++++ +|++.+|++|+||||+ ++|+..+..+.+++..+.+.
T Consensus 99 ~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~ 172 (195)
T PRK13541 99 NSAETLYAAIHYFKLHD------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS 172 (195)
T ss_pred ccHHHHHHHHHHcCCHh------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 11233444444444422 1122234445444 6889999999999999 89999999999999877667
Q ss_pred Cc-EEEEecCCC
Q 012882 188 GT-VLVATSNRA 198 (454)
Q Consensus 188 G~-vlV~ThN~~ 198 (454)
|. +|++||+..
T Consensus 173 ~~tiii~sh~~~ 184 (195)
T PRK13541 173 GGIVLLSSHLES 184 (195)
T ss_pred CCEEEEEeCCcc
Confidence 76 888888864
No 63
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.9e-16 Score=158.58 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=99.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------------------------HHHHHHHHHH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------------------------MLKINEHMHR 92 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------------------------~~~~~~~i~~ 92 (454)
..+.-++|+|+||||||||+++|+|.+++ ..+...+.+... .....+.+++
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~ 109 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLP-DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV 109 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEE
Confidence 46778999999999999999999999875 345444432211 1233445666
Q ss_pred Hhhh---hhcccchhhhhhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCC
Q 012882 93 LWKN---QVAEKSLRSSISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGA 158 (454)
Q Consensus 93 ~~~~---~~~~~t~~e~l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p 158 (454)
+.|. .....|+.+++........... ..++.++..+++.. .........+++++ ++|+.+|
T Consensus 110 v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGqkqrvalA~aL~~~P 184 (305)
T PRK13651 110 VFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-----SYLQRSPFELSGGQKRRVALAGILAMEP 184 (305)
T ss_pred EeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----hhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 6653 1223477776632221111111 33455555555531 11122233445444 6888999
Q ss_pred cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 159 SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 159 ~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+||+||||+ ++|+..+..+.++|..+.+.|. ||++||+.
T Consensus 185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 999999999 8999999999999999987777 99999985
No 64
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.66 E-value=3e-16 Score=149.52 Aligned_cols=149 Identities=12% Similarity=0.106 Sum_probs=96.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HH---HH-HHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LK---IN-EHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~---~~-~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+||||||||||+++|+|..++ ..| .+.+++. . .. .. ..++++.|. .....|+.+++
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 104 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSG--EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV 104 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHH
Confidence 356788999999999999999999999874 233 4444321 1 01 11 345555555 33446777776
Q ss_pred hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ...... ...+.+++..+++.. ........+++++ ++|+.+|++|+||||+ ++|+.++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 178 (221)
T TIGR02211 105 AMPLLIGKKSVKEAKERAYEMLEKVGLEH------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 (221)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence 2211 111111 123344555555432 1222334455554 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.++|..+.++ |. +|++||+.
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999753 66 88999874
No 65
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.9e-16 Score=156.29 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=99.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|.+++. .| .+.+++. .......++++.|.. ....|+.+++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G--~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~ 104 (274)
T PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RG--RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG 104 (274)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ce--EEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhh
Confidence 3567889999999999999999999998742 33 4443321 123344566666642 2345777776322
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
......+. ..++.++..+++... .......+++++ +||+.+|++||||||+ ++|+.++..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~ 178 (274)
T PRK13647 105 PVNMGLDKDEVERRVEEALKAVRMWDF------RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178 (274)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHHH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 11111111 234455555555321 122234455554 6889999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|.++.++|. +|++||+.
T Consensus 179 ~~l~~~~~~g~tili~tH~~ 198 (274)
T PRK13647 179 EILDRLHNQGKTVIVATHDV 198 (274)
T ss_pred HHHHHHHHCCCEEEEEeCCH
Confidence 99999987776 89999985
No 66
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.7e-16 Score=150.37 Aligned_cols=146 Identities=17% Similarity=0.124 Sum_probs=95.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhh--hhcccchhhhhhcc--cc
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKN--QVAEKSLRSSISGW--IT 112 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~ 112 (454)
++ -++|+||||||||||+++|+|.+++ .. +.+.+++.. ......+.++.++ .....|+.+++... ..
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 100 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPP-SS--GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCC-Cc--cEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh
Confidence 45 7889999999999999999999874 23 345444321 1223445555554 23445777766221 11
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...++.++..+++... .......+++++ +||+.+|++|+||||+ ++|+.++..+.++|.
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 174 (211)
T cd03264 101 GIPSKEVKARVDEVLELVNLGDR------AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS 174 (211)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHH------HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 11111 1233445555554321 122334555554 6889999999999999 899999999999999
Q ss_pred HHHhCCcEEEEecCC
Q 012882 183 RLLSTGTVLVATSNR 197 (454)
Q Consensus 183 ~L~~~G~vlV~ThN~ 197 (454)
++.+..++|++||+.
T Consensus 175 ~~~~~~tii~vsH~~ 189 (211)
T cd03264 175 ELGEDRIVILSTHIV 189 (211)
T ss_pred HHhCCCEEEEEcCCH
Confidence 997654489999984
No 67
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.5e-17 Score=165.12 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=98.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..+.-++|+||||||||||+++|+|..++. .| .+.+++. ....++.+.++.|. ..+.+|+.+++.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~-~G--~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 98 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQ-KG--RIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence 456789999999999999999999998642 33 4443321 11123345555554 345567777763
Q ss_pred ccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 109 GWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 109 ~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
.... ......+++++..+++.. ........+++++ +||+.+|++|+||||+ ++|+..+..+.++
T Consensus 99 ~~~~--~~~~~~~~~~l~~~gl~~------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 99 YGMA--KSMVAQFDKIVALLGIEP------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred hhhh--hhhHHHHHHHHHHcCCch------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 2111 112244555666655532 1222334455554 6889999999999999 8999999999999
Q ss_pred HHHHHhC-Cc-EEEEecCC
Q 012882 181 VSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~~-G~-vlV~ThN~ 197 (454)
|.++.++ |. +|++||+.
T Consensus 171 L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 171 LERLAREINIPILYVSHSL 189 (352)
T ss_pred HHHHHHhcCCeEEEEecCH
Confidence 9999865 66 99999985
No 68
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=1.9e-16 Score=154.00 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCCh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~ 118 (454)
..++-++|+||||||||||+++|+|.+++. .+ .+.+... .+.++.+.. ....|+.+++...........
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~-~G--~i~~~g~------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 93 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPD-EG--DIEIELD------TVSYKPQYIKADYEGTVRDLLSSITKDFYTHP 93 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CC--eEEECCc------eEEEecccccCCCCCCHHHHHHHHhhhccccH
Confidence 456779999999999999999999998742 33 4444321 234444432 234566666522111111111
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT 189 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~ 189 (454)
...++++..+++... .......+++++ +||+.+|++|+||||+ +||+..+..+.++|.++.++ |.
T Consensus 94 ~~~~~~l~~l~l~~~------~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 167 (246)
T cd03237 94 YFKTEIAKPLQIEQI------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEK 167 (246)
T ss_pred HHHHHHHHHcCCHHH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 233455555555321 122234455554 6889999999999999 89999999999999999764 66
Q ss_pred -EEEEecCC
Q 012882 190 -VLVATSNR 197 (454)
Q Consensus 190 -vlV~ThN~ 197 (454)
+|++||+.
T Consensus 168 tiiivsHd~ 176 (246)
T cd03237 168 TAFVVEHDI 176 (246)
T ss_pred EEEEEeCCH
Confidence 99999984
No 69
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.9e-16 Score=149.92 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=99.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-----HHHHHHHHHhhh----hhcccchhhhhhc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-----KINEHMHRLWKN----QVAEKSLRSSISG 109 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-----~~~~~i~~~~~~----~~~~~t~~e~l~~ 109 (454)
....+..++|+|++|||||||.++++|...+ ..|...++...... ...+.+..+.|. ..+..|+.+.+.-
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 3456788999999999999999999998875 24444443321111 112233334443 2333445444422
Q ss_pred cccC--CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 110 WITN--LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 110 ~~~~--~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.+.. .......+.+++...++.. ..+.+...++++++ |||..+|++|++|||+ .||+..+..+++
T Consensus 108 pl~~~~~~~~~~~i~~~L~~VgL~~-----~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Iln 182 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQVGLPP-----SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILN 182 (252)
T ss_pred hhccCCccHHHHHHHHHHHHcCCCH-----HHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHH
Confidence 2222 2222234455555555532 12233344566665 7999999999999999 899999999999
Q ss_pred HHHHHHhC-Cc-EEEEecCC
Q 012882 180 IVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~-G~-vlV~ThN~ 197 (454)
+|.++.++ |. .|++|||.
T Consensus 183 lL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 183 LLLELKKERGLTYLFISHDL 202 (252)
T ss_pred HHHHHHHhcCceEEEEeCcH
Confidence 99999875 55 99999994
No 70
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.66 E-value=1.2e-16 Score=151.56 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=95.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
..++.-++|+|+||||||||+++|+|.+++ .. +.+.+.+... .....+.++.+. .....|+.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 99 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TS--GRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL 99 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHh
Confidence 346788999999999999999999999864 23 3444432110 011234555544 23345777766321111
Q ss_pred CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 114 LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 114 ~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..... ..+++++..+++.. ........+++++ ++|+.+|++|+||||+ ++|+.++..+.++|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03301 100 RKVPKDEIDERVREVAELLQIEH------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHH------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 11111 23344445444422 1122234455554 6888999999999999 89999999999999
Q ss_pred HHHHhC-Cc-EEEEecCC
Q 012882 182 SRLLST-GT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~ 197 (454)
.++.++ |. ||++||+.
T Consensus 174 ~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 174 KRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHHHHHcCCEEEEEeCCH
Confidence 999764 66 89999974
No 71
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.4e-16 Score=162.21 Aligned_cols=149 Identities=12% Similarity=0.139 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H-------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M-------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~-------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..++.-++|+||||||||||+++|+|.+++ .. +.+.+++. . ...++.++++.|+ ....+|+.+++.
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-~~--G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~ 104 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERP-TS--GRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVA 104 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHH
Confidence 346777999999999999999999999874 23 34444321 1 1123445555554 334567777763
Q ss_pred ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
... ...... ...+++++..+++... .......+++++ +||+.+|+||+||||+ +||+.++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~ 178 (343)
T PRK11153 105 LPLELAGTPKAEIKARVTELLELVGLSDK------ADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178 (343)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 211 111111 1234455555555321 122334556554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhC-Cc-EEEEecCC
Q 012882 177 LSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+.++|.++.++ |+ +|++||+.
T Consensus 179 l~~~L~~l~~~~g~tiilvtH~~ 201 (343)
T PRK11153 179 ILELLKDINRELGLTIVLITHEM 201 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999764 76 89999984
No 72
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3e-16 Score=151.84 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=99.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhcc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGW- 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~- 110 (454)
..+++-++|+||||+|||||+++|+|..++ .. +.+.+++. ....+..+.++.+. .....|+.+++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 100 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TS--GEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP 100 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CC--ceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHH
Confidence 356788999999999999999999999874 23 34444321 11234455666665 34456777776321
Q ss_pred -ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 111 -ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 111 -~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
....... ...+++++..+++... .........+++++ +|++.+|++|+||||+ ++|+.++..+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 176 (242)
T cd03295 101 KLLKWPKEKIRERADELLALVGLDPA----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCCcH----HHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence 1111111 1234455555555310 01122334555554 6889999999999999 899999999999
Q ss_pred HHHHHHhC-Cc-EEEEecCC
Q 012882 180 IVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~-G~-vlV~ThN~ 197 (454)
+|.++.++ |. ||++||+.
T Consensus 177 ~L~~~~~~~g~tvii~sH~~ 196 (242)
T cd03295 177 EFKRLQQELGKTIVFVTHDI 196 (242)
T ss_pred HHHHHHHHcCCEEEEEecCH
Confidence 99999764 76 88888874
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.66 E-value=1.8e-16 Score=154.03 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=96.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------------HHHHHHHHHHHhhh--hhcccch
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------------MLKINEHMHRLWKN--QVAEKSL 103 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------------~~~~~~~i~~~~~~--~~~~~t~ 103 (454)
..++.-++|+|+||||||||+++|+|.+++ ..| .+.+++. ....+..++++.+. .....|+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAG--TIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTV 102 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCe--EEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCH
Confidence 356777999999999999999999998864 233 3433221 11233445555554 2334677
Q ss_pred hhhhhcccc-CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 104 RSSISGWIT-NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 104 ~e~l~~~~~-~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
.+++..... ...... ..++.++..+++... .......+++++ +||+.+|+||+||||+ ++|
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 103 LENIIEGPVIVKGEPKEEATARARELLAKVGLAGK------ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch------hhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 777632111 001111 233444444444221 122234455544 6888999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 171 VFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++..+.++|..+.++|. +|++||+.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 177 PELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999999987776 88999984
No 74
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.9e-16 Score=150.29 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=94.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
.+ +-++|+||||||||||+++|+|.+++ ..| .+.+++. .....+.+.++.+. .....|+.+++.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 97 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGG--TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLA 97 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHH
Confidence 46 88999999999999999999999874 233 3444321 11123345555554 233456666653
Q ss_pred ccccCCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 109 GWITNLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 109 ~~~~~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
....... .....+++++..+++... .......+++++ ++++.+|++|+||||+ ++|+.++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (214)
T cd03297 98 FGLKRKRNREDRISVDELLDLLGLDHL------LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171 (214)
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCHhH------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 2111110 011234445555554321 112223444443 6888999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. +|++||+.
T Consensus 172 ~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 172 PELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred HHHHHHHHHcCcEEEEEecCH
Confidence 999999765 76 89999984
No 75
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.66 E-value=3e-16 Score=149.44 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhcc--cc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISGW--IT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~ 112 (454)
..++.-++|+||||||||||+++|+|..++ ..|...+..... .....+.+.++.+. .....|+.+++... ..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 103 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRP-TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK 103 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc
Confidence 346677999999999999999999999864 234333322211 11233445555554 33456777766221 11
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...+++++..+++... .......+++++ +|++.+|++|+||||+ ++|+..+..+.++|.
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 104 GLPKSEIKEEVELLLRVLGLTDK------ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHH------HhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 11111 1234455555555321 122234455554 6889999999999999 899999999999999
Q ss_pred HHHhCCcEEEEecCC
Q 012882 183 RLLSTGTVLVATSNR 197 (454)
Q Consensus 183 ~L~~~G~vlV~ThN~ 197 (454)
.+.+..++|++||+.
T Consensus 178 ~~~~~~tii~~sH~~ 192 (220)
T cd03263 178 EVRKGRSIILTTHSM 192 (220)
T ss_pred HHhcCCEEEEEcCCH
Confidence 987643488899874
No 76
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.66 E-value=2.4e-16 Score=154.16 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=98.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-HHHHHHHHHHHhhh--hhcccchhhhhhccccCCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPF 116 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~ 116 (454)
..++.-++|+||||||||||+++|+|.+++. .+.+.+++. .....+.+.++.|. ..+..|+.+++...... .
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~--~ 109 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKG--Q 109 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccc--h
Confidence 3467789999999999999999999998742 344544332 12233445555554 23445777776322111 1
Q ss_pred ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-C
Q 012882 117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-T 187 (454)
Q Consensus 117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~ 187 (454)
....+.+++..+++... .......+++++ ++|+.+|++|+||||+ +||+..+..+.++|..+.+ .
T Consensus 110 ~~~~~~~~l~~~gl~~~------~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (257)
T PRK11247 110 WRDAALQALAAVGLADR------ANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183 (257)
T ss_pred HHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 12344555666655321 122234455554 6888999999999999 8999999999999999865 4
Q ss_pred Cc-EEEEecCC
Q 012882 188 GT-VLVATSNR 197 (454)
Q Consensus 188 G~-vlV~ThN~ 197 (454)
|. +|++||+.
T Consensus 184 ~~tviivsHd~ 194 (257)
T PRK11247 184 GFTVLLVTHDV 194 (257)
T ss_pred CCEEEEEeCCH
Confidence 65 89999985
No 77
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.66 E-value=8.9e-17 Score=165.11 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=101.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT- 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~- 112 (454)
...+.-++|+|||||||||||++|+|..++ ..+.+.+.+.. ......++++.|. .++.+|+.+|+.....
T Consensus 37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 113 (375)
T PRK09452 37 INNGEFLTLLGPSGCGKTTVLRLIAGFETP---DSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRM 113 (375)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence 345677999999999999999999998874 23445443321 1112345556555 4566788888732221
Q ss_pred -CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 113 -NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 113 -~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..... ...+++++..+++.. ........+++++ |||+.+|+||+||||+ +||...+..+.+.|
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 114 QKTPAAEITPRVMEALRMVQLEE------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL 187 (375)
T ss_pred cCCCHHHHHHHHHHHHHHcCCch------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 11111 123445555555532 1223344556554 7899999999999999 89999999999999
Q ss_pred HHHHhC-Cc-EEEEecCC
Q 012882 182 SRLLST-GT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~ 197 (454)
.++.++ |. +|++||+.
T Consensus 188 ~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 188 KALQRKLGITFVFVTHDQ 205 (375)
T ss_pred HHHHHhcCCEEEEEeCCH
Confidence 999864 76 99999985
No 78
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=9.3e-17 Score=163.71 Aligned_cols=149 Identities=14% Similarity=0.121 Sum_probs=101.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT- 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~- 112 (454)
...++-++|+||||||||||+++|+|..++. . +.+.+.+.. ....+.++++.|. ..+.+|+.+|+.....
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~--G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~ 105 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-E--GQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKM 105 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-c--eEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhH
Confidence 3467889999999999999999999998742 3 445443321 1122445666665 4566788888733221
Q ss_pred -CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 113 -NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 113 -~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..... ...+++++..+++... .......+++++ |||+.+|+||+||||+ +||+..+..+.+.|
T Consensus 106 ~~~~~~~~~~~v~~~l~~~gl~~~------~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 179 (351)
T PRK11432 106 LGVPKEERKQRVKEALELVDLAGF------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI 179 (351)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 11111 1344555555555321 122344556554 7889999999999999 89999999999999
Q ss_pred HHHHhC-Cc-EEEEecCC
Q 012882 182 SRLLST-GT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~ 197 (454)
..+.++ |. +|++||+.
T Consensus 180 ~~l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 180 RELQQQFNITSLYVTHDQ 197 (351)
T ss_pred HHHHHhcCCEEEEEcCCH
Confidence 999765 76 99999985
No 79
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.65 E-value=7e-17 Score=165.19 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=101.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-- 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-- 112 (454)
..+.-+.|+||||||||||+++|+|..++. ...+.+.+.+.. ....+.++++.|. ..+.+|+.+++.....
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~ 107 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ 107 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence 456779999999999999999999988742 300444443211 1112345555555 4566788887732221
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...++++++.+++.. ........|++++ |||+.+|+||+||||+ +||+..+..+.+.|.
T Consensus 108 ~~~~~~~~~~v~~~l~~~gL~~------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~ 181 (362)
T TIGR03258 108 KMPKADIAERVADALKLVGLGD------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181 (362)
T ss_pred CCCHHHHHHHHHHHHHhcCCCc------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 11111 134455555555532 2233344566554 7899999999999999 899999999999999
Q ss_pred HHHhC--Cc-EEEEecCCC
Q 012882 183 RLLST--GT-VLVATSNRA 198 (454)
Q Consensus 183 ~L~~~--G~-vlV~ThN~~ 198 (454)
++.++ |+ +|++||+..
T Consensus 182 ~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 182 ALHEELPELTILCVTHDQD 200 (362)
T ss_pred HHHHhCCCCEEEEEeCCHH
Confidence 99876 66 999999853
No 80
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.7e-16 Score=153.26 Aligned_cols=149 Identities=14% Similarity=0.097 Sum_probs=96.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT- 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~- 112 (454)
..+++-++|+||||||||||+++|+|..++ .. +.+.+++.. ....+.+.++.|. .....|+.+++.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 101 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLERP-DS--GTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRV 101 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhh
Confidence 356788999999999999999999999864 23 344443311 0112345555554 2344677777632111
Q ss_pred -CC--CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 113 -NL--PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 113 -~~--~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.. .... ..++.++..+++.. ........+++++ +||+.+|++|+||||+ ++|+..+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l 175 (239)
T cd03296 102 KPRSERPPEAEIRAKVHELLKLVQLDW------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175 (239)
T ss_pred ccccccCCHHHHHHHHHHHHHHcCChh------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11 0011 23344555555422 1122234455554 6889999999999999 8999999999
Q ss_pred HHHHHHHHhC-Cc-EEEEecCC
Q 012882 178 SGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.++|.++.+. |. ||++||+.
T Consensus 176 ~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 176 RRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999764 66 89999984
No 81
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3e-16 Score=151.75 Aligned_cols=149 Identities=16% Similarity=0.168 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------------HHHHHHHHHHHhhh--hhcccchhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------------MLKINEHMHRLWKN--QVAEKSLRS 105 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------------~~~~~~~i~~~~~~--~~~~~t~~e 105 (454)
..+++-++|.||||||||||+++|+|..++ .. +++.+.+. .....+.+.++++. .....|+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 101 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RS--GTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQ 101 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHH
Confidence 346788999999999999999999999864 23 44554332 11234456666655 334467777
Q ss_pred hhhc-cc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 106 SISG-WI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 106 ~l~~-~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
++.. .. ...... ...+..++..+++.. .+......+++++ +|++.+|+||+||||+ ++|+.
T Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 102 NLIEAPCRVLGLSKDQALARAEKLLERLRLKP------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 7632 11 111110 123344444444422 1222334455554 6889999999999999 89999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+..+.++|.++.++|. +|++||+.
T Consensus 176 ~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 176 ITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999999987777 88999984
No 82
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.8e-16 Score=157.46 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=97.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~ 106 (454)
..+++-++|+||||+|||||+++|+|.+++ ..| .+.++.. .......+.++.+.. ....|+.++
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~ 106 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSG--TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKD 106 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCc--EEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHH
Confidence 356788999999999999999999999875 234 4444321 112333455555541 223577777
Q ss_pred hhccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 107 ISGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 107 l~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
+.... ...... ...+++++..+++.. .........+++++ +||+.+|++|+||||+ ++|+..+
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~ 181 (287)
T PRK13641 107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSE-----DLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181 (287)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-----hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence 63211 111111 123445555555521 01111233444443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|.++.+.|. ||++||+.
T Consensus 182 ~~l~~~l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 182 KEMMQLFKDYQKAGHTVILVTHNM 205 (287)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999999987776 88999984
No 83
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.65 E-value=4.7e-16 Score=149.19 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|.+++ ..| .+.+.+.. ......++++.+. .....|+.+++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSG--SIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG 99 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--EEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHH
Confidence 356788999999999999999999999874 233 44443211 1123345666655 33445777766221
Q ss_pred ccCCCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 111 ITNLPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 111 ~~~~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
....... ....+.++..++... .........+++++ ++|+.+|++|+||||+ ++|+.++..+.++|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~l~-----~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l 174 (230)
T TIGR03410 100 LAALPRRSRKIPDEIYELFPVLK-----EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI 174 (230)
T ss_pred HHhcCcchHHHHHHHHHHHHhHH-----HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 1111111 122333443333110 11122233445444 6888999999999999 89999999999999
Q ss_pred HHHHhC-Cc-EEEEecCC
Q 012882 182 SRLLST-GT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~ 197 (454)
.++.++ |. +|++||+.
T Consensus 175 ~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 175 RRLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHHHHcCCcEEEEEeCCH
Confidence 999874 66 88999984
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.3e-16 Score=150.57 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=98.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|.+++ ..| .+.+.+. ....+..+.++.+. .....|+.+++...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 102 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAG--NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV 102 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhh
Confidence 456788999999999999999999999864 233 4443321 11123445666655 33446777776322
Q ss_pred ccC---CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 111 ITN---LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 111 ~~~---~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
... .... ...+++++..+++.. ........+++++ +|++.+|++|+||||+ ++|+..+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (241)
T PRK10895 103 LQIRDDLSAEQREDRANELMEEFHIEH------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176 (241)
T ss_pred hhcccccCHHHHHHHHHHHHHHcCCHH------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 111 1111 123455555555432 1222334555554 6888999999999999 8999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+++..+.++|. +|++||+.
T Consensus 177 ~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 177 KRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHHHHHHhcCCEEEEEEcCH
Confidence 999999987776 88888874
No 85
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.65 E-value=1.5e-16 Score=155.33 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------------------HHHHHHHHHHHhhh--hh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------------------MLKINEHMHRLWKN--QV 98 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------------------~~~~~~~i~~~~~~--~~ 98 (454)
..++.-++|+|+||||||||+++|+|.+++. . +.+.+.+. ....+..++++++. ..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 104 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLEKPS-E--GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 104 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--eEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccC
Confidence 4567889999999999999999999998742 3 34444321 11233455665554 23
Q ss_pred cccchhhhhhc-c--ccCCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882 99 AEKSLRSSISG-W--ITNLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI 166 (454)
Q Consensus 99 ~~~t~~e~l~~-~--~~~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp 166 (454)
...++.+++.. . ...... ....+.+++..+++.... .......+++++ +||+.+|++|+||||
T Consensus 105 ~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (257)
T PRK10619 105 SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA-----QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP 179 (257)
T ss_pred CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh-----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34677777622 1 111110 113344555555553211 011223344443 688899999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+ ++|+.++..+.++|.++.+.|. +|++||+.
T Consensus 180 t~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 180 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9 8999999999999999987777 89999984
No 86
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.65 E-value=2.2e-16 Score=151.13 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=96.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC-----CCcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT-----EGIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLR 104 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l-----~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~ 104 (454)
..+++-++|+|+||||||||+++|+|.. ++ .. +.+.+.+.. ....+.+.++.|. .. ..|+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~ 98 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DE--GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIY 98 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CC--eEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHH
Confidence 3467889999999999999999999998 53 23 444443321 1223345555554 23 46777
Q ss_pred hhhhccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHH-HHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 105 SSISGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAV-ADKFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 105 e~l~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~v-a~~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
+++.... ...... ...++.++..+++..... ... ...+++++ +||+.+|++|+||||+ ++|
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-----DRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-----ccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 7763211 111111 123445555555532111 001 23455554 6889999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 171 VFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
+..+..+.++|.++.++..+|++||+.
T Consensus 174 ~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 174 PISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 999999999999998773489999984
No 87
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3.6e-16 Score=154.30 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=98.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhhh---hcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKNQ---VAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~ 111 (454)
..++.-++|+|+||||||||+++|+|.+++ ..|...++.... .......++++.+.. ....|+.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 103 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP 103 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence 356788999999999999999999999874 244333332211 123344566665542 23457777763221
Q ss_pred cCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 112 TNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 112 ~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.....+. ..++.++..+++... .......+++++ +||+.+|+||+||||+ ++|+.++..+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~ 177 (274)
T PRK13644 104 ENLCLPPIEIRKRVDRALAEIGLEKY------RHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177 (274)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCHHH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1111111 234445555555321 111223444443 6889999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|.++.++|. +|++||+.
T Consensus 178 ~l~~l~~~g~til~~tH~~ 196 (274)
T PRK13644 178 RIKKLHEKGKTIVYITHNL 196 (274)
T ss_pred HHHHHHhCCCEEEEEecCH
Confidence 9999987777 89999985
No 88
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.1e-16 Score=149.66 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-C
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-N 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-~ 113 (454)
.+++-++|+||||||||||+++|+|..++ ..| .+.+++.. ......+.++.|. .....|+.+++..... .
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G--~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 98 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETP-QSG--RVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG 98 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence 46788999999999999999999999874 233 44443211 0112345565555 3345677777632211 1
Q ss_pred CC---CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 114 LP---FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 114 ~~---~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.. .....+++++..+++... .......+++++ +|++.+|++|+||||+ ++|+.++..+.++|.
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 172 (211)
T cd03298 99 LKLTAEDRQAIEVALARVGLAGL------EKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172 (211)
T ss_pred cCccHHHHHHHHHHHHHcCCHHH------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 11 112344555655555321 111223445444 6888999999999999 899999999999999
Q ss_pred HHHh-CCc-EEEEecCC
Q 012882 183 RLLS-TGT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~-~G~-vlV~ThN~ 197 (454)
++.+ .|. +|++||+.
T Consensus 173 ~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 173 DLHAETKMTVLMVTHQP 189 (211)
T ss_pred HHHHhcCCEEEEEecCH
Confidence 9975 466 88999984
No 89
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.6e-16 Score=156.08 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=100.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||+|||||+++|+|.+++ ..|...+..... .......++++.+.. ....|+.+++...
T Consensus 29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 107 (283)
T PRK13636 29 IKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107 (283)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence 356788999999999999999999999874 244333332221 123445566666652 2345777776322
Q ss_pred cc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 IT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.. ..... ...++.++..+++... .......+++++ +||+.+|+|||||||+ ++|+..+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~ 181 (283)
T PRK13636 108 AVNLKLPEDEVRKRVDNALKRTGIEHL------KDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 (283)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 11 11111 1334555565665321 122233444444 6888999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+++.++.++ |. ||++||+.
T Consensus 182 ~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 182 KLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHHHHhCCCEEEEEecCH
Confidence 999999865 66 89999985
No 90
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.65 E-value=1.9e-16 Score=159.49 Aligned_cols=174 Identities=13% Similarity=0.092 Sum_probs=117.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhccccC-
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWITN- 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~- 113 (454)
..+.-+.|+||+|||||||+++|+|...|. . ++|.+.+- ..--.+.++.+.|. +++.+|+.+|+...+..
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~-~--G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-S--GEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--ceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 445569999999999999999999988642 3 34443321 11223566777776 77888888888444331
Q ss_pred C-CCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 114 L-PFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 114 ~-~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
. .... .++++++...++.+ ...+...++++++ |||+.+|+||+||||. .||..-+..+..-+
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~El 179 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEG------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKEL 179 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchh------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHH
Confidence 1 1212 34455555555533 1233344566665 7899999999999999 79999999999999
Q ss_pred HHHHhC-Cc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882 182 SRLLST-GT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD 233 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D 233 (454)
.++.++ |. .|++||+...+--..+++ .+++.+++...+++.+
T Consensus 180 k~lq~~~giT~i~VTHDqeEAl~msDrI----------~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 180 KELQRELGITFVYVTHDQEEALAMSDRI----------AVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHhcCCeEEEEECCHHHHhhhccce----------EEccCCceeecCCHHH
Confidence 998754 77 999999975555444442 3456666666666644
No 91
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.65 E-value=3.2e-16 Score=149.88 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=94.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhhh----hcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKNQ----VAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~~----~~~~t~~e~ 106 (454)
..+++-++|+||||||||||+++|+|..++ ..| .+.+++.. ...++.+.++.+.. ....|+.++
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~n 104 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLKP-TSG--SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQ 104 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHH
Confidence 456778999999999999999999999864 233 44443211 12234455555542 234677777
Q ss_pred hhcccc--CCCCChHH----HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 107 ISGWIT--NLPFDSKV----MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 107 l~~~~~--~~~~~~~~----~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
+..... ........ .++++..+++.. .........+++++ ++|+.+|++|+||||+ ++|+.
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~ 179 (228)
T cd03257 105 IAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-----EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179 (228)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-----hHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence 632111 11111111 123444444421 01112223445444 6888999999999999 89999
Q ss_pred HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++..+.++|.++.++ |. ||++||+.
T Consensus 180 ~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 180 VQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999999999999865 66 88999984
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.8e-16 Score=154.80 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=95.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhh--hhcccchhhhhhccc--cCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKN--QVAEKSLRSSISGWI--TNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~--~~~~~t~~e~l~~~~--~~~ 114 (454)
..++.-++|+||||||||||+++|+|.+++ ..| .+.+++.-. .....++++.+. .....|+.+++.... ...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 100 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHG--SITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV 100 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC
Confidence 346778999999999999999999999864 233 444432110 011123444444 234456777663211 111
Q ss_pred CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 115 PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 115 ~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
... ...+++++..+++... .......+++++ ++|+.+|++|+||||+ ++|+..+..+.++|..+
T Consensus 101 ~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 101 EKMQRLEIAHQMLKKVGLEGA------EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174 (255)
T ss_pred CHHHHHHHHHHHHHHcCChhH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 111 1234455555555321 112234455554 6889999999999999 89999999999999998
Q ss_pred Hh-CCc-EEEEecCC
Q 012882 185 LS-TGT-VLVATSNR 197 (454)
Q Consensus 185 ~~-~G~-vlV~ThN~ 197 (454)
.+ .|. +|++||+.
T Consensus 175 ~~~~g~tviivsH~~ 189 (255)
T PRK11248 175 WQETGKQVLLITHDI 189 (255)
T ss_pred HHhcCCEEEEEeCCH
Confidence 64 466 89999984
No 93
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.65 E-value=2.1e-16 Score=150.08 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT- 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~- 112 (454)
..++.-++|.||||+|||||+++|+|.+++. .+++.+.+.- ......+.++.+. .....|+.+++.....
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~ 97 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHP 97 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhc
Confidence 3467889999999999999999999998742 3455543321 1122345555554 3344677777632111
Q ss_pred CCC-C--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 113 NLP-F--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 113 ~~~-~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
... . .....++++..+++... .......+++++ ++++.+|+||+||||+ ++|+.++..+.++|
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 171 (213)
T TIGR01277 98 GLKLNAEQQEKVVDAAQQVGIADY------LDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV 171 (213)
T ss_pred cCCccHHHHHHHHHHHHHcCcHHH------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 110 1 12334455555555321 122233444444 6888999999999999 89999999999999
Q ss_pred HHHHhC-Cc-EEEEecCC
Q 012882 182 SRLLST-GT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~ 197 (454)
.++.++ |. +|++||+.
T Consensus 172 ~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 172 KQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HHHHHhcCCEEEEEeCCH
Confidence 999764 66 88888884
No 94
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.65 E-value=2.2e-16 Score=161.43 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--hH----HHH----HHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--AM----LKI----NEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f~----~~~----~~~i~~~~~~--~~~~~t~~e~l 107 (454)
...++-++|+||||||||||+++|+|..++. .| .+.+++ .. ..+ +..++++.|. ..+.+|+.+++
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~-~G--~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi 92 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-AG--QIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNT 92 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCC-ce--EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHH
Confidence 3567889999999999999999999999752 33 444432 11 111 3345666655 45567888877
Q ss_pred hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
........++. ..+.+++..+++.. ........+++++ |||+.+|+||+||||+ ++|+..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~vgL~~------~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~ 166 (363)
T TIGR01186 93 SLGPELLGWPEQERKEKALELLKLVGLEE------YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD 166 (363)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCch------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 32221111221 33445555555532 2233344566665 7999999999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.+++..+.+. |. +|++||+.
T Consensus 167 ~l~~~l~~l~~~~~~Tii~vTHd~ 190 (363)
T TIGR01186 167 SMQDELKKLQATLQKTIVFITHDL 190 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999754 66 99999985
No 95
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.5e-16 Score=157.26 Aligned_cols=149 Identities=16% Similarity=0.202 Sum_probs=97.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..++.-++|+|+||||||||+++|+|.+++ .. +.+.+.+. .......+.++.+.. ....|+.+++...
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~ 103 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKP-TS--GSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG 103 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cc--eEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhH
Confidence 346788999999999999999999999874 23 34444321 123344555555542 2245777766322
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
......+. ..++.++..+++... .......+++++ +||+.+|++|+||||+ ++|+.++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~ 177 (277)
T PRK13652 104 PINLGLDEETVAHRVSSALHMLGLEEL------RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11111121 233445555554321 112233445444 6889999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. ||++||+.
T Consensus 178 ~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 178 DFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred HHHHHHHHhcCCEEEEEecCH
Confidence 999999875 76 88899884
No 96
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=5.4e-16 Score=153.51 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=100.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh---hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ---VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~~ 112 (454)
..+++-++|+|+||||||||+++|+|.+++ ..|+..+..... .....+.++++.|.. ....|+.+++.....
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~ 108 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE 108 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence 346788999999999999999999999875 244333332221 123344566666642 334577777732211
Q ss_pred CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 113 NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 113 ~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
...... ..++.++..+++... +......+++++ +||+.+|+||+||||+ +||+.++..+.++
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 182 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQVGMEDF------LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET 182 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHcCChhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 111111 234455555555321 222334455554 6889999999999999 8999999999999
Q ss_pred HHHHHhC-Cc-EEEEecCC
Q 012882 181 VSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~~-G~-vlV~ThN~ 197 (454)
|.++.+. |. ||++||+.
T Consensus 183 l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 183 VRQLKEQKGITVLSITHDL 201 (279)
T ss_pred HHHHHHcCCCEEEEEecCH
Confidence 9999875 76 88999985
No 97
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=8.2e-16 Score=157.85 Aligned_cols=166 Identities=18% Similarity=0.198 Sum_probs=117.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCc-----eEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR-----QRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k-----~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
.++.--.|+|.||+||||||++|||.+.|. .+. ..+.|++........|+.+.|+ +.+.+|+.||+......
T Consensus 28 ~~GeIHaLLGENGAGKSTLm~iL~G~~~P~-~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~ 106 (501)
T COG3845 28 KKGEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEP 106 (501)
T ss_pred cCCcEEEEeccCCCCHHHHHHHHhCcccCC-cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcc
Confidence 456678999999999999999999998753 333 3456677777778888888887 67889999998444332
Q ss_pred C---CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 114 L---PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 114 ~---~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
. ..+. ..++.+....++.- ++ ......++.+. ++|++++++||||||| +|-+..+..|.
T Consensus 107 ~~~~~~~~~~~~~~i~~l~~~yGl~v-----dp-~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf 180 (501)
T COG3845 107 SKGGLIDRRQARARIKELSERYGLPV-----DP-DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF 180 (501)
T ss_pred ccccccCHHHHHHHHHHHHHHhCCCC-----Cc-cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 2222 23334444444421 11 11122222221 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccC
Q 012882 179 GIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIG 229 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~ 229 (454)
.+++.|.+.|+ ||++||-. ..+..+.++++|+.-+
T Consensus 181 ~~l~~l~~~G~tIi~ITHKL----------------~Ev~~iaDrvTVLR~G 216 (501)
T COG3845 181 EILRRLAAEGKTIIFITHKL----------------KEVMAIADRVTVLRRG 216 (501)
T ss_pred HHHHHHHHCCCEEEEEeccH----------------HHHHHhhCeeEEEeCC
Confidence 99999999999 99999852 3455667777777554
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.65 E-value=5.2e-16 Score=149.65 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=96.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
..+++-++|+|+||||||||+++|+|..++. .+.+.+++.. ......+.++.+. .....|+.+++.....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 100 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAA 100 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHH
Confidence 3567889999999999999999999998642 3445443311 1112345555554 2245677776632111
Q ss_pred CCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 113 NLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 113 ~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..... ...++.++..+++... +......+++++ +||+.+|+||+||||+ ++|+..+..+.++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 174 (236)
T TIGR03864 101 LHGLSRAEARERIAALLARLGLAER------ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAH 174 (236)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence 11111 1233444555544321 122233455554 6889999999999999 8999999999999
Q ss_pred HHHHHh-CCc-EEEEecCC
Q 012882 181 VSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~-~G~-vlV~ThN~ 197 (454)
|..+.+ +|. +|++||+.
T Consensus 175 l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 175 VRALCRDQGLSVLWATHLV 193 (236)
T ss_pred HHHHHHhCCCEEEEEecCh
Confidence 999975 466 89999985
No 99
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.4e-16 Score=151.46 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=94.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
..+++-++|+|+||||||||+++|+|.+++ ..| .+.+++. . ......+.++.+.. ....++.+++.....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEG--SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM 102 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchh
Confidence 346778999999999999999999999864 233 4444331 1 12233445555541 112466666532111
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
........++.++..+++... ........+++++ +|++.+|++|+||||+ ++|+.++..+.++|.++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (241)
T PRK14250 103 LKGEKNVDVEYYLSIVGLNKE-----YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKL 177 (241)
T ss_pred hcCcHHHHHHHHHHHcCCCHH-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 111112344555555555210 0111223344443 6888999999999999 89999999999999999
Q ss_pred HhC-Cc-EEEEecCC
Q 012882 185 LST-GT-VLVATSNR 197 (454)
Q Consensus 185 ~~~-G~-vlV~ThN~ 197 (454)
.++ |. ||++||+.
T Consensus 178 ~~~~g~tii~~sH~~ 192 (241)
T PRK14250 178 KNKMNLTVIWITHNM 192 (241)
T ss_pred HHhCCCEEEEEeccH
Confidence 764 66 89999984
No 100
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.1e-16 Score=155.08 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=95.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSSI 107 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~l 107 (454)
.++.-++|+||||||||||+++|+|.+++ ..| .+.+++. .......+.++.+.. ....|+.+++
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 107 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQG--SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDV 107 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cce--EEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHH
Confidence 46677999999999999999999999874 233 4443321 122344566666542 2234777766
Q ss_pred hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
........... ..++.++..+++... ........+++++ +||+.+|+||+||||+ +||+.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (280)
T PRK13649 108 AFGPQNFGVSQEEAEALAREKLALVGISES-----LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182 (280)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCChh-----hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 32111111111 223344444444210 1112233444444 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++|..+.++|. ||++||+.
T Consensus 183 ~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 183 ELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred HHHHHHHHHHHCCCEEEEEeccH
Confidence 99999999987676 89999984
No 101
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.64 E-value=2e-16 Score=161.72 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
.+++-++|+||||||||||+++|+|..++. . +.+.+++.. ......++++.|. ..+.+|+.+++.
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~-~--G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 97 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-E--GEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR 97 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence 456779999999999999999999998742 3 344443211 1122345555554 344567877773
Q ss_pred ccccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 109 GWITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 109 ~~~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
......... ...+++++..+++... .......+++++ +||+.+|++|+||||+ ++|+..+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~ 171 (354)
T TIGR02142 98 YGMKRARPSERRISFERVIELLGIGHL------LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171 (354)
T ss_pred HHhhccChhHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 221111111 1234555665555321 122334555554 6889999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. +|++||+.
T Consensus 172 ~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 172 PYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred HHHHHHHHhcCCEEEEEecCH
Confidence 999999875 66 99999985
No 102
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.64 E-value=5.9e-16 Score=148.33 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=96.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH---H-HHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK---I-NEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~---~-~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+|+||||||||+++|+|..++. . +.+.+.+.. .. . +..+.++.+. .....|+.+++
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~-~--G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l 109 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGS-S--GEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENV 109 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-C--eeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHH
Confidence 3567889999999999999999999998642 3 445543311 00 1 1235555554 23345677766
Q ss_pred hcc--ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGW--ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~--~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
... ....... ...+++++..+++... .......+++++ +||+.+|++|+||||+ ++|+.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 110 ELPALLRGESSRQSRNGAKALLEQLGLGKR------LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHhH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 221 1111111 1234455555555321 122234455554 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.++|.++.++ |. ||++||+.
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCH
Confidence 999999999754 65 89999984
No 103
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.1e-15 Score=159.53 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=107.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCce-----EEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQ-----RFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~-----rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
..++.-..|+|.||||||||||+|+|..++. .+.. .+.|.+........|..+.|+ +.+++|+.+|+|....
T Consensus 31 v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~-~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 31 VRPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred EeCceEEEEecCCCCCHHHHHHHHhCcccCC-CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence 4567889999999999999999999998752 3322 233444444555667777777 6789999999976554
Q ss_pred CCC----CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 113 NLP----FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 113 ~~~----~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
... .+. ..++.++..+++.. + ....+..|+.++ +|+..+++|||||||| .|+......
T Consensus 110 ~~~~~g~id~~~m~~~A~~~l~~lg~~~-----~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~ 183 (500)
T COG1129 110 PTRRFGLIDRKAMRRRARELLARLGLDI-----D-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER 183 (500)
T ss_pred cccCCCccCHHHHHHHHHHHHHHcCCCC-----C-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 432 122 34445555554420 1 122223333222 6777999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
|.+++++|.++|+ +|++||+.
T Consensus 184 Lf~~ir~Lk~~Gv~ii~ISHrl 205 (500)
T COG1129 184 LFDLIRRLKAQGVAIIYISHRL 205 (500)
T ss_pred HHHHHHHHHhCCCEEEEEcCcH
Confidence 9999999999999 99999974
No 104
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.64 E-value=1.7e-16 Score=162.03 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
..++-++|+||||||||||+++|+|..++. . +.+.+.+.. ....+.++++.|. ..+.+|+.+++.......
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~--G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~ 102 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQT-S--GHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL 102 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--cEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhc
Confidence 467889999999999999999999998742 3 344443211 1122346666665 456678888873322110
Q ss_pred ----CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 115 ----PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 115 ----~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
..+ ...+++++..+++... .......+++++ |||+.+|++|+||||+ +||+..+..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~ 176 (353)
T PRK10851 103 PRRERPNAAAIKAKVTQLLEMVQLAHL------ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176 (353)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 111 1344556666665321 222344556554 7899999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. +|++|||.
T Consensus 177 ~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 177 RWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred HHHHHHHHhcCCEEEEEeCCH
Confidence 999999875 66 99999985
No 105
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.64 E-value=7.2e-16 Score=145.04 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=106.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
.+.++-+.|+|+||+||||||++|+|.+++ ..++|.|... -..++..+.++++. .++.+|+.||+...
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g 102 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG 102 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhh
Confidence 356778999999999999999999999974 2456666432 23456667788776 68889999998544
Q ss_pred ccCCCC---ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 111 ITNLPF---DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 111 ~~~~~~---~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
...... .....+.+...+-.. .+...+.+..+++++ |||+.+|++|+||||+ +|-|.-...+.+
T Consensus 103 ~~~~~~~~~~~~~~e~v~~lFP~L-----ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~ 177 (237)
T COG0410 103 AYARRDKEAQERDLEEVYELFPRL-----KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 177 (237)
T ss_pred hhcccccccccccHHHHHHHChhH-----HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHH
Confidence 333221 111144444433321 122233455555554 7889999999999999 999999999999
Q ss_pred HHHHHHhC-Cc-EEEEecCC
Q 012882 180 IVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+..|.++ |. |+++-.|.
T Consensus 178 ~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 178 AIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred HHHHHHHcCCcEEEEEeccH
Confidence 99999976 65 88888773
No 106
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.1e-16 Score=155.85 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=98.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..++.-++|+|+||||||||+++|+|.+++. .|...+..... ...+...++++.|.. ....|+.+++...
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 108 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG 108 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhH
Confidence 3467889999999999999999999998742 33333322111 123345566666642 2245777776322
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
........ ..++.++..+++... .........+++++ +||+.+|++|+||||+ +||+..+..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~gL~~~----~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~ 184 (287)
T PRK13637 109 PINLGLSEEEIENRVKRAMNIVGLDYE----DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL 184 (287)
T ss_pred HHHCCCCHHHHHHHHHHHHHHcCCCch----hhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence 11111111 234455555555300 00111223444443 6889999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. ||++||+.
T Consensus 185 ~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 185 NKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred HHHHHHHHhcCCEEEEEeCCH
Confidence 999999865 76 99999985
No 107
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=4.7e-16 Score=153.54 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=98.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhhh---hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ---VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~---~~~~t~~e~l~ 108 (454)
..++.-++|+|+||||||||+++|+|.+++. . +.+.+.+.. ......++++.+.. ....++.+++.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~ 101 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPT-S--GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA 101 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--cEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence 3567889999999999999999999998742 3 344443311 12345566666652 23357777763
Q ss_pred ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.......... ..+..++..+++.+. .......+++++ +||+.+|+||+||||+ ++|+.++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 102 FGPLNLGLSKEEVEKRVKEALKAVGMEGF------ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 2111111111 233444555554321 112234455554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.++|. ||++||+.
T Consensus 176 l~~~l~~l~~~~~til~vtH~~ 197 (275)
T PRK13639 176 IMKLLYDLNKEGITIIISTHDV 197 (275)
T ss_pred HHHHHHHHHHCCCEEEEEecCH
Confidence 9999999987776 99999985
No 108
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.5e-16 Score=151.41 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhcccc-C
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWIT-N 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-~ 113 (454)
.+++-++|+|+||||||||+++|+|..++ ..| .+.+.+... .....++++.+. .....|+.+++..... .
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 99 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTP-ASG--SLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG 99 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc
Confidence 46788999999999999999999999874 233 444432110 112345555554 3344677777732211 1
Q ss_pred CCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 114 LPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 114 ~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.... ...++.++..+++... .......+++++ +|++.+|++|+||||+ ++|+.++..+.++|.
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~ 173 (232)
T PRK10771 100 LKLNAAQREKLHAIARQMGIEDL------LARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS 173 (232)
T ss_pred cCCCHHHHHHHHHHHHHcCcHHH------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1111 1334555555555321 122233455444 6888999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 174 ~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 174 QVCQERQLTLLMVSHSL 190 (232)
T ss_pred HHHHhcCCEEEEEECCH
Confidence 98764 66 89999985
No 109
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=6.6e-16 Score=148.92 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=94.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..++.-++|+|+||||||||+++|+|..++ ..| .+.+++.. ......++++.+. .....|+.+++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSG--RIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCc--eEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence 356788999999999999999999999874 233 44443311 1123345555554 33445777766321
Q ss_pred ccCCCCC--hHHHHHHHHHH-hhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 111 ITNLPFD--SKVMEWVAAEE-KYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 111 ~~~~~~~--~~~~e~ll~~~-~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
....... ...++.++..+ ++.. ........+++++ ++|+.+|+||+||||+ ++|+..+..+.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~~------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~ 178 (237)
T PRK11614 105 GFFAERDQFQERIKWVYELFPRLHE------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD 178 (237)
T ss_pred hhccChhHHHHHHHHHHHHHHHHHH------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence 1111111 12223333333 1211 1111233455544 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|.++.++|. +|++||+.
T Consensus 179 ~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 179 TIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred HHHHHHHCCCEEEEEeCcH
Confidence 9999987777 88888874
No 110
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.4e-16 Score=156.68 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=95.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~ 106 (454)
...++-++|+|+||||||||+++|+|.+++. .| .+.+.+. .......++++.|.. ....|+.++
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~ 105 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPT-EG--KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKD 105 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCC-Cc--EEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHH
Confidence 3467889999999999999999999998742 34 4444321 122344555555531 122466666
Q ss_pred hhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 107 ISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 107 l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
+.........+. ..+.+++..+++... ........+++++ ++|+.+|++|+||||+ ++|+.++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~ 180 (288)
T PRK13643 106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLADE-----FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180 (288)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCChh-----hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHH
Confidence 622111111111 223444444444210 0111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|.++.++|. ||++||+.
T Consensus 181 ~~l~~~l~~l~~~g~til~vtHd~ 204 (288)
T PRK13643 181 IEMMQLFESIHQSGQTVVLVTHLM 204 (288)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCH
Confidence 999999999987776 99999985
No 111
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.64 E-value=6.6e-16 Score=151.27 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=99.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----------HHHHHHHHHHhhh--hhcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----------LKINEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----------~~~~~~i~~~~~~--~~~~~t~~e~ 106 (454)
..+++-++|+|+||||||||+++|+|.+++.....+.+.+++.. ......++++.+. ....+|+.++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 106 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN 106 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence 35678899999999999999999999986421113455554321 1223345666655 3345677777
Q ss_pred hhccccCC--------C-CC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 107 ISGWITNL--------P-FD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 107 l~~~~~~~--------~-~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
+....... . .. ...++.++..+++... .......+++++ +||+.+|+||+||||+
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 180 (262)
T PRK09984 107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF------AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI 180 (262)
T ss_pred HHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH------HhCCccccCHHHHHHHHHHHHHhcCCCEEEecCcc
Confidence 73221100 0 01 1344555665555321 111223344443 6888999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|+..+..+.++|.++.++ |. ||++||+.
T Consensus 181 ~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 89999999999999999764 66 99999985
No 112
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.4e-16 Score=155.73 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhh---hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ---VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~---~~~~t~~e~l~ 108 (454)
..++.-++|+|+||||||||+++|+|.+++ ..|...+..... .......++++.|.. ....|+.+++.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~ 108 (290)
T PRK13634 30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDIC 108 (290)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHH
Confidence 356788999999999999999999999874 234333322211 123344566666642 22357777763
Q ss_pred ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
........+. ..+++++..+++... ........+++++ ++|+.+|++|+||||+ +||+..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 109 FGPMNFGVSEEDAKQKAREMIELVGLPEE-----LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCChh-----hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 2211111111 234555556665311 0111123344443 6888999999999999 899999999
Q ss_pred HHHHHHHHHhC-Cc-EEEEecCC
Q 012882 177 LSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+.++|.++.++ |. ||++||+.
T Consensus 184 l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 184 MMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999764 76 99999985
No 113
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.3e-16 Score=155.04 Aligned_cols=152 Identities=11% Similarity=0.082 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhhh---hcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKNQ---VAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~ 111 (454)
..+++-++|+|+||||||||+++|+|.+++ ..|...+..... .....+.++++.+.. ....++.+++....
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~ 111 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGP 111 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhH
Confidence 346778999999999999999999999874 244444332221 122344556665542 12235555552111
Q ss_pred c--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 112 T--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 112 ~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. ..... ...++.++..+++... .......+++++ ++|+.+|++||||||+ ++|+.++..+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~ 185 (280)
T PRK13633 112 ENLGIPPEEIRERVDESLKKVGMYEY------RRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN 185 (280)
T ss_pred hhcCCCHHHHHHHHHHHHHHCCCHhH------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 11111 1334555555555321 112234445444 6888999999999999 899999999999
Q ss_pred HHHHHHh-CCc-EEEEecCCC
Q 012882 180 IVSRLLS-TGT-VLVATSNRA 198 (454)
Q Consensus 180 ll~~L~~-~G~-vlV~ThN~~ 198 (454)
+|.++.+ .|. ||++||+..
T Consensus 186 ~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 186 TIKELNKKYGITIILITHYME 206 (280)
T ss_pred HHHHHHHhcCCEEEEEecChH
Confidence 9999976 476 899999864
No 114
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3e-16 Score=161.20 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-- 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-- 112 (454)
..+.-++|+||||||||||+++|+|..++. . +.+.+++.. ....+.++++.|. ..+.+|+.+++.....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~-~--G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDIT-S--GDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-c--eEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 456779999999999999999999998642 3 444443211 1112345666665 4456788888732221
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...+++++..+++... .......|++++ +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 104 ~~~~~~~~~~~~~~l~~lgL~~~------~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~ 177 (369)
T PRK11000 104 GAKKEEINQRVNQVAEVLQLAHL------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177 (369)
T ss_pred CCCHHHHHHHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11111 1344555666555321 122334566554 7889999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 178 ~l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 178 RLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHHHhCCEEEEEeCCH
Confidence 99764 66 99999984
No 115
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.64 E-value=3.5e-16 Score=150.40 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-HHHHHHHHHHhhh--hhcccchhhhhhccccC--CC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LKINEHMHRLWKN--QVAEKSLRSSISGWITN--LP 115 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~--~~ 115 (454)
.++.-++|+|+||||||||+++|+|.+++ ..| .+.+++.. ........++.|. .....|+.+++...... ..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 85 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQP-TSG--GVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD 85 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence 45677999999999999999999999874 233 44443210 0011112344444 33446777776322110 01
Q ss_pred CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882 116 FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR 183 (454)
Q Consensus 116 ~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~ 183 (454)
.+. ..++.++..+++... .......+++++ ++|+.+|++|+||||+ ++|+..+..+.++|.+
T Consensus 86 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 86 LSKSERRAIVEEHIALVGLTEA------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCHHH------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 111 233455555555321 122234455554 6888999999999999 8999999999999999
Q ss_pred HHhC-Cc-EEEEecCC
Q 012882 184 LLST-GT-VLVATSNR 197 (454)
Q Consensus 184 L~~~-G~-vlV~ThN~ 197 (454)
+.++ |. +|++||+.
T Consensus 160 ~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 160 IWEEHRVTVLMVTHDV 175 (230)
T ss_pred HHHhcCCEEEEEeCCH
Confidence 8764 66 88999974
No 116
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=8.4e-16 Score=152.09 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|.+++. .| .+.+.+. .....+.++++.|.. ....|+.+++...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SG--QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG 106 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--EEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence 3567889999999999999999999998742 33 4444332 123445566666642 3446777777322
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
......+. ..++.++..+++... .......+++++ +||+.+|+||+||||+ ++|+.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (279)
T PRK13650 107 LENKGIPHEEMKERVNEALELVGMQDF------KEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180 (279)
T ss_pred HHhCCCCHHHHHHHHHHHHHHCCCHhH------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 11111111 344555666665321 112223445444 6889999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|..+.++ |. ||++||+.
T Consensus 181 ~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 181 KTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHHHhcCCEEEEEecCH
Confidence 999999864 76 89999985
No 117
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.5e-16 Score=152.69 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhhh---hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ---VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~---~~~~t~~e~l~ 108 (454)
..+++-++|+|+||||||||+++|+|.+++. . +.+.+.+.. ......++++.|.. ....++.+++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~--G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 100 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-K--GAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIA 100 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-c--cEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHH
Confidence 3466779999999999999999999998742 3 344443211 12334556665542 12234555542
Q ss_pred ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.......... ...+.++..+++.... ......+++++ ++|+.+|+||+||||+ ++|+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~ 174 (271)
T PRK13638 101 FSLRNLGVPEAEITRRVDEALTLVDAQHFR------HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHhHh------cCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1111111111 2233444444442211 11233445444 6888999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.++|. ||++||+.
T Consensus 175 l~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 175 MIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH
Confidence 9999999987776 88999984
No 118
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.63 E-value=3.7e-16 Score=153.74 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=95.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H-------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M-------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~-------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..++.-++|+|+||||||||+++|+|..++ ..| .+.+++. . ......+.++.+. .....|+.+++.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 106 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAP-DHG--EILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVA 106 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHH
Confidence 356778999999999999999999999874 233 4443321 0 1123345555554 334457777763
Q ss_pred ccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
...... ..+. ..+..++..+++... .......+++++ ++|+.+|++|+||||+ +||+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 180 (269)
T PRK11831 107 YPLREHTQLPAPLLHSTVMMKLEAVGLRGA------AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180 (269)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 211111 1111 223344454444321 122234455554 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.++|.++.++ |. +|++||+.
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCH
Confidence 999999999764 66 89999984
No 119
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=3e-16 Score=154.46 Aligned_cols=150 Identities=12% Similarity=0.108 Sum_probs=96.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHH----HHHHHHHhhh--hhcccchhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKI----NEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~----~~~i~~~~~~--~~~~~t~~e~ 106 (454)
...+++-++|+||||||||||+++|+|.+++. . +.+.+++.. ... ...+.++.+. .....|+.++
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~--G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 122 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-S--GKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN 122 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-C--eEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHH
Confidence 34567889999999999999999999998742 3 344443311 011 1234555554 3344677777
Q ss_pred hhccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 107 ISGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 107 l~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
+.... ...... ...+++++..+++... +......+++++ +||+.+|+|||||||+ ++|+..+
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~ 196 (269)
T cd03294 123 VAFGLEVQGVPRAEREERAAEALELVGLEGW------EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 63211 111111 1233445555554321 122233455554 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 175 VALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
..+.++|.++.+. |. +|++||+.
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999754 66 88999974
No 120
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.63 E-value=6.8e-16 Score=146.75 Aligned_cols=151 Identities=17% Similarity=0.085 Sum_probs=95.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
...+++-++|+|+||||||||+++|+|..++. . +.+.+++.. ......+.++.+. .....|+.+++......
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~--G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-S--GQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGL 109 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-C--eeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence 34567889999999999999999999998742 3 445444311 0112234444443 23334666665221110
Q ss_pred -CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 114 -LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 114 -~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
........+.++..+++... .......+++++ ++++.+|++|+||||+ ++|+..+..+.+++..+
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (214)
T PRK13543 110 HGRRAKQMPGSALAIVGLAGY------EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183 (214)
T ss_pred cCCcHHHHHHHHHHHcCChhh------ccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 01112233444554544221 111223444443 6888999999999999 89999999999999998
Q ss_pred HhCCc-EEEEecCCC
Q 012882 185 LSTGT-VLVATSNRA 198 (454)
Q Consensus 185 ~~~G~-vlV~ThN~~ 198 (454)
.++|. +|++||+..
T Consensus 184 ~~~~~tiii~sH~~~ 198 (214)
T PRK13543 184 LRGGGAALVTTHGAY 198 (214)
T ss_pred HhCCCEEEEEecChh
Confidence 87776 899999853
No 121
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=3.6e-16 Score=148.09 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=101.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
...++-++|+||||+|||||+++++|.++| ..++|.|..- ..-.+..+....|. .+.++|+.||+.-.
T Consensus 27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P---~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va 103 (250)
T COG0411 27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKP---SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVG 103 (250)
T ss_pred EcCCeEEEEECCCCCCceeeeeeecccccC---CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHH
Confidence 356778999999999999999999999975 3456666543 11222233333333 57788999987221
Q ss_pred cc------CC----CC--Ch----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 111 IT------NL----PF--DS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 111 ~~------~~----~~--~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
.. .. .+ .+ +.+..+++..++.. .....|..++.++ +||+.+|+|||||||.
T Consensus 104 ~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 104 AHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred hhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence 11 11 01 11 34445555555533 2233444444443 6888999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++.+.....+.++++++.+. |+ ++++-||.
T Consensus 178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 178 AGLNPEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 99999999999999999985 56 99999996
No 122
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.63 E-value=3.5e-16 Score=167.31 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=99.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HHHH-HHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LKIN-EHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~~~-~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+||||||||||+++|+|.+++. . +.+.+++. . .... ..++++.|. ....+|+.+++...
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 110 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-S--GTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG 110 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcc
Confidence 3456779999999999999999999998742 3 34444321 0 1111 224455554 34556777776332
Q ss_pred ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 111 ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 111 ~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..........+++++..+++.. ........+++++ +||+.+|+||+||||+ ++|+..+..+.++|.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 184 (510)
T PRK15439 111 LPKRQASMQKMKQLLAALGCQL------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184 (510)
T ss_pred cccchHHHHHHHHHHHHcCCCc------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 2111111134455555555522 1223345566655 6889999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCCC
Q 012882 183 RLLSTGT-VLVATSNRA 198 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~ 198 (454)
++.++|. ||++||+..
T Consensus 185 ~~~~~g~tiiivtHd~~ 201 (510)
T PRK15439 185 ELLAQGVGIVFISHKLP 201 (510)
T ss_pred HHHHCCCEEEEEeCCHH
Confidence 9988777 999999854
No 123
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=6.6e-16 Score=150.69 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=96.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
..++.-++|+|+||||||||+++|+|.+++ ..|...+...... ......+.++.++ .....++.+++......
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~ 103 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP 103 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccch
Confidence 346777999999999999999999998864 2343333222111 1233445666655 23345777766321100
Q ss_pred ----CC--CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 114 ----LP--FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 114 ----~~--~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.. .. ...++.++..+++.... ......+++++ +|++.+|++|+||||+ ++|+..+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 177 (255)
T PRK11231 104 WLSLWGRLSAEDNARVNQAMEQTRINHLA------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177 (255)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCCHHHH------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 01 01 12344555555553211 11223344443 6888999999999999 8999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.++|.++.++|. +|++||+.
T Consensus 178 ~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 178 MRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred HHHHHHHHHCCCEEEEEECCH
Confidence 999999987776 89999974
No 124
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=6.4e-16 Score=153.48 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~ 106 (454)
..++.-++|+|+||||||||+++|+|.+++. .| .+.+++. ...+...++++.|.. ....|+.++
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~ 106 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPT-TG--TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVERE 106 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--EEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHH
Confidence 3467789999999999999999999998742 34 4444321 123455667776642 122377777
Q ss_pred hhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 107 ISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 107 l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
+.........+. ..++.++..+++.. +........+++++ +||+.+|+||+||||+ ++|+.++
T Consensus 107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~ 181 (286)
T PRK13646 107 IIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-----DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK 181 (286)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 632211111111 23445555555521 01111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 175 VALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
..+.++|.++.++ |. ||++||+.
T Consensus 182 ~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 182 RQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCH
Confidence 9999999999764 76 99999985
No 125
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.8e-16 Score=152.05 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=98.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
...++.-++|+|+||||||||+++|+|..++ ..| .+.+++.- ....+.+.++.+. ....+++.+++...
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEG--EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCC--EEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence 3456788999999999999999999999874 234 44443211 1223445666554 23456777776322
Q ss_pred ccCC-----CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 111 ITNL-----PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 111 ~~~~-----~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ... ...++.++..+++... +......+++++ +||+.+|+||+||||+ ++|+.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (265)
T PRK10575 110 RYPWHGALGRFGAADREKVEEAISLVGLKPL------AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHH------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1100 011 1234455555555321 112233455544 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 175 VALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
..+.++|.++.+. |. +|++||+.
T Consensus 184 ~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 184 VDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999764 66 89999984
No 126
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.4e-16 Score=162.10 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=99.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT- 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~- 112 (454)
...+.-++|+|||||||||||++|+|..++. . +.+.+++.. ....+.++++.|. .++.+|+.+|+.....
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~--G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~ 118 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPT-A--GQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ 118 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-c--eEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 3467789999999999999999999998742 3 344443211 1123345666655 5666788888732221
Q ss_pred -CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 113 -NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 113 -~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..... ...+++++..+++.. ........+++++ |||+.+|+||+||||+ +||...+..+.+.|
T Consensus 119 ~~~~~~~~~~~v~~~l~~l~L~~------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 192 (377)
T PRK11607 119 DKLPKAEIASRVNEMLGLVHMQE------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 (377)
T ss_pred cCCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11111 123344555555532 1222334555554 7899999999999999 89999999999999
Q ss_pred HHHHh-CCc-EEEEecCC
Q 012882 182 SRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~-~G~-vlV~ThN~ 197 (454)
.++.+ .|. +|++||+.
T Consensus 193 ~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 193 VDILERVGVTCVMVTHDQ 210 (377)
T ss_pred HHHHHhcCCEEEEEcCCH
Confidence 88865 476 89999985
No 127
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.62 E-value=8e-16 Score=150.49 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=96.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
..++.-++|+|+||||||||+++|+|..++ ..| .+.+++. .......++++.+. .....|+.+++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 101 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELSP-DSG--EVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGR 101 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--EEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhh
Confidence 346778999999999999999999999864 244 3433321 11223445566655 224567777763221
Q ss_pred cCCCC--C--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhc------cCCcEEEeeCCC-CCCHHH
Q 012882 112 TNLPF--D--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQ------RGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 112 ~~~~~--~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~------~~p~lL~LDEp~-~lD~~~ 173 (454)
..... . ...++.++..+++.... ......+++++ +||+ .+|++|+||||+ ++|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~ 175 (258)
T PRK13548 102 APHGLSRAEDDALVAAALAQVDLAHLA------GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175 (258)
T ss_pred cccCCCcHHHHHHHHHHHHHcCCHhHh------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHH
Confidence 11111 1 12344555555553211 11223444443 5777 489999999999 899999
Q ss_pred HHHHHHHHHHHH-hCCc-EEEEecCC
Q 012882 174 IVALSGIVSRLL-STGT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~-~~G~-vlV~ThN~ 197 (454)
+..+.++|.++. ++|. ||++||+.
T Consensus 176 ~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 176 QHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 999999999997 5676 88899874
No 128
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=6.5e-16 Score=142.70 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=79.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhhhhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~~~~~t~~e~l~~~~ 111 (454)
..++.-++|.||||+|||||+++|+|.+++ .. +.+.+++.. ......+.++.+. .
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~--------------~ 85 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DS--GSILIDGEDLTDLEDELPPLRRRIGMVFQD--------------F 85 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEEccccchhHHHHhhcEEEEecC--------------C
Confidence 346788999999999999999999999874 23 445443321 0111122222221 1
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT 189 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~ 189 (454)
. .....+..+++... +.+ -......++ +||+.+|++|+||||+ ++|+.++..+.+++.++.++ |.
T Consensus 86 ~-~~~~~t~~~~l~~~--lS~---G~~qr~~la-------~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 152 (178)
T cd03229 86 A-LFPHLTVLENIALG--LSG---GQQQRVALA-------RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152 (178)
T ss_pred c-cCCCCCHHHheeec--CCH---HHHHHHHHH-------HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 1 11112333332111 100 000112233 4556899999999999 89999999999999999886 66
Q ss_pred -EEEEecCC
Q 012882 190 -VLVATSNR 197 (454)
Q Consensus 190 -vlV~ThN~ 197 (454)
+|++||+.
T Consensus 153 tiii~sH~~ 161 (178)
T cd03229 153 TVVLVTHDL 161 (178)
T ss_pred EEEEEeCCH
Confidence 88889884
No 129
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.1e-16 Score=151.94 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..++.-++|.||||||||||+++|+|..++ ..| .+.+++. .....+.++++.+.. ....|+.+++...
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G--~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 108 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLLKP-QSG--EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG 108 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCc--eEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhH
Confidence 356778999999999999999999999874 233 4444321 112344566666542 3346777776322
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.....+.. ..+++++..+++... +......+++++ +||+.+|+||+||||+ ++|+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~ 182 (271)
T PRK13632 109 LENKKVPPKKMKDIIDDLAKKVGMEDY------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182 (271)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHH------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11111121 234455555555321 112223444443 6888999999999999 89999999999
Q ss_pred HHHHHHHhCC-c-EEEEecCC
Q 012882 179 GIVSRLLSTG-T-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G-~-vlV~ThN~ 197 (454)
++|.++.++| . +|++||+.
T Consensus 183 ~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 183 KIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred HHHHHHHHhcCcEEEEEEech
Confidence 9999997653 5 88899985
No 130
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.2e-15 Score=142.88 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=106.0
Q ss_pred ccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----H-HHHHHHHHHHhhhhh----cccch
Q 012882 33 VGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----M-LKINEHMHRLWKNQV----AEKSL 103 (454)
Q Consensus 33 ~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~-~~~~~~i~~~~~~~~----~~~t~ 103 (454)
++.-.+..+++.-..|+||||||||||++++++..++. .+...+..+.| . .++++.|+.+..++. ...++
T Consensus 47 L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v 125 (257)
T COG1119 47 LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETV 125 (257)
T ss_pred ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccccccc
Confidence 33334566778889999999999999999999998863 55555554433 2 578888888776532 23345
Q ss_pred hhhhhccccC---CC---CCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 104 RSSISGWITN---LP---FDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 104 ~e~l~~~~~~---~~---~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
.+.+....+. .+ .+. ..+..+++.+++.... .+--..++.++ |||+.+|.+||||||+
T Consensus 126 ~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la------~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~ 199 (257)
T COG1119 126 RDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199 (257)
T ss_pred ceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhc------cCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence 5555222111 11 222 3445556665553311 11112233332 7889999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHhC--Cc-EEEEecCC
Q 012882 168 -TVDVFAIVALSGIVSRLLST--GT-VLVATSNR 197 (454)
Q Consensus 168 -~lD~~~a~~L~~ll~~L~~~--G~-vlV~ThN~ 197 (454)
++|...++.+.+.|.++... +. +|++||+-
T Consensus 200 ~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 99999999999999999865 55 99999973
No 131
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.62 E-value=6.4e-16 Score=150.47 Aligned_cols=149 Identities=13% Similarity=0.172 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------------------HHHHHHHHHHhhh--hh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------------------LKINEHMHRLWKN--QV 98 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------------------~~~~~~i~~~~~~--~~ 98 (454)
..++.-++|+|+||||||||+++|+|..++. . +.+.+.+.. ....+.+.++.+. ..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPID-E--GQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLF 99 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccC
Confidence 4567889999999999999999999988642 3 344443210 1223345555544 23
Q ss_pred cccchhhhhhcc-c--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882 99 AEKSLRSSISGW-I--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI 166 (454)
Q Consensus 99 ~~~t~~e~l~~~-~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp 166 (454)
...|+.+++... . ...... ...+++++..+++.. ........+++++ +||+.+|++|+||||
T Consensus 100 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 100 PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 445777766321 1 111111 123344455554422 1122334455554 688899999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 167 Q-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 167 ~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+ ++|+.++..+.++|.++.++ |. +|++||+.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 9 89999999999999999764 76 88999984
No 132
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.62 E-value=9.6e-16 Score=146.81 Aligned_cols=152 Identities=17% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhcc-c-c
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISGW-I-T 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~~-~-~ 112 (454)
..+++-++|+||||||||||+++|+|.+++.....+.+.+.+. .....+.++++.|. ....+|+.+++... . .
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 109 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILR 109 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhh
Confidence 4567889999999999999999999998610012334444321 11233445555554 33445777776211 1 1
Q ss_pred CCCC-Ch----HHHHH-HHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 113 NLPF-DS----KVMEW-VAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 113 ~~~~-~~----~~~e~-ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.... .. ...+. ++..+++.. ........+++++ ++|+.+|++||||||+ ++|+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~ 183 (226)
T cd03234 110 LPRKSSDAIRKKRVEDVLLRDLALTR------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183 (226)
T ss_pred cccccchHHHHHHHHHHHHHhhcchh------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHH
Confidence 1000 00 11122 333333321 1111223344443 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
+++.++.++|. +|++||+.
T Consensus 184 ~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 184 STLSQLARRNRIVILTIHQP 203 (226)
T ss_pred HHHHHHHHCCCEEEEEecCC
Confidence 99999987776 88888874
No 133
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.62 E-value=6.9e-16 Score=151.47 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=97.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
..++.-++|+||||||||||+++|+|.+++ .. +.+.+++.- ......+.++.+. .....++.+++....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~ 106 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AH--GHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGR 106 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CC--cEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCc
Confidence 346778999999999999999999999874 23 445554321 1223456666665 233457777763211
Q ss_pred -cC--C--CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 112 -TN--L--PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 112 -~~--~--~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.. . ... ...++.++..+++... .......+++++ +|++.+|++|+||||+ ++|+.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~ 180 (265)
T PRK10253 107 YPHQPLFTRWRKEDEEAVTKAMQATGITHL------ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI 180 (265)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCCHHH------hcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 11 0 011 1234455555555321 111223344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.++|..+.++ |. +|++||+.
T Consensus 181 ~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 181 DLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999764 66 89999984
No 134
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.5e-16 Score=150.07 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=94.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|..++ ..| .+.+.+.. ...+..+.++.+. ....+|+.+++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKP-TGG--TILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCC-Ccc--eEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence 356788999999999999999999999874 233 44443211 1111223334444 34456777776321
Q ss_pred cc---------CC------CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEee
Q 012882 111 IT---------NL------PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFD 164 (454)
Q Consensus 111 ~~---------~~------~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LD 164 (454)
.. .. ... ...++.++..+++.. ....-...+++++ +||+.+|++|+||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 178 (255)
T PRK11300 105 QHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178 (255)
T ss_pred hhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 10 00 000 022334444444422 1222234455554 6889999999999
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 165 EIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 165 Ep~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
||+ ++|+..+..+.++|.++.++ |+ ||++||+.
T Consensus 179 EPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 999 89999999999999999775 76 88889874
No 135
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=5.9e-16 Score=156.06 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=96.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech---h-----------------HHHHHHHHHHHhhhh--
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE---A-----------------MLKINEHMHRLWKNQ-- 97 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~---f-----------------~~~~~~~i~~~~~~~-- 97 (454)
..+++-++|+|+||||||||+++|+|..++ ..|...+.... . ...+.+.++++.|..
T Consensus 49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~ 127 (320)
T PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEY 127 (320)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchh
Confidence 356778999999999999999999999874 24433332211 1 122344455555542
Q ss_pred -hcccchhhhhhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeC
Q 012882 98 -VAEKSLRSSISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDE 165 (454)
Q Consensus 98 -~~~~t~~e~l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDE 165 (454)
....|+.+++.........+. ..++.++..+++.. .........+++++ +||+.+|++|+|||
T Consensus 128 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDE 202 (320)
T PRK13631 128 QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-----SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDE 202 (320)
T ss_pred ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-----hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 122366666632211111111 23344555555421 01111223344443 68889999999999
Q ss_pred CC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 166 IQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 166 p~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
|+ +||+.++..+.++|.++.++|. ||++||+.
T Consensus 203 PtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~ 236 (320)
T PRK13631 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236 (320)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 99 8999999999999999987776 88999984
No 136
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=7.6e-16 Score=141.61 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-----HHHHHHHHHhhhhhcccchhhhhhccccCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-----KINEHMHRLWKNQVAEKSLRSSISGWITNLP 115 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-----~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~ 115 (454)
.+++-++|+|+||||||||+++|+|..++ . .+.+.+++... ..+..+.+ +++... ..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~--~G~i~~~g~~~~~~~~~~~~~i~~--------------~~q~~~-~~ 85 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP-D--SGEIKVLGKDIKKEPEEVKRRIGY--------------LPEEPS-LY 85 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CeEEEECCEEcccchHhhhccEEE--------------EecCCc-cc
Confidence 46778999999999999999999999864 2 34555543211 11111222 222211 11
Q ss_pred CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEE
Q 012882 116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVA 193 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ 193 (454)
...++.+++. +.+ .......+| +||+.+|++|++|||+ ++|+..+..+.++|.++.++|. +|++
T Consensus 86 ~~~tv~~~~~----LS~---G~~qrv~la-------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~ 151 (173)
T cd03230 86 ENLTVRENLK----LSG---GMKQRLALA-------QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLS 151 (173)
T ss_pred cCCcHHHHhh----cCH---HHHHHHHHH-------HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 1224444442 111 001112233 4556899999999999 8999999999999999987776 8889
Q ss_pred ecCC
Q 012882 194 TSNR 197 (454)
Q Consensus 194 ThN~ 197 (454)
||+.
T Consensus 152 th~~ 155 (173)
T cd03230 152 SHIL 155 (173)
T ss_pred CCCH
Confidence 9874
No 137
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.62 E-value=4.4e-16 Score=185.10 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=123.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhh--cccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSIS--GWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~--~~~~ 112 (454)
..+++-++|+|+||||||||+++|+|.+++. .|...+..... ....++.+++++|. ....+|+.+++. ....
T Consensus 1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt-sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~ 2040 (2272)
T TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVT-SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040 (2272)
T ss_pred EcCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc
Confidence 3567789999999999999999999998752 44444433222 22345567777776 455678888872 2222
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
+.+.. ...+++++..+++... ....++.+++++ +||+.+|+||+||||+ ++|+..+..++++|.
T Consensus 2041 g~~~~~~~~~v~~lLe~lgL~~~------~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257 2041 GVPAEEIEKVANWSIQSLGLSLY------ADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHH------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 32221 1344556666666321 223345566665 6889999999999999 999999999999999
Q ss_pred HHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882 183 RLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 236 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~ 236 (454)
++.++|+ ||++||+....+-+++++ .+..+++++..++..+.|.
T Consensus 2115 ~l~~~g~TIILtTH~mee~e~lcDrV----------~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2115 SIIREGRAVVLTSHSMEECEALCTRL----------AIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEE----------EEEECCEEEEECCHHHHHH
Confidence 9987787 899999865555555542 2345566666666666554
No 138
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.62 E-value=1.2e-15 Score=145.81 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEec--h----hH----HH---H-HHHHHHHhhh--hhcccch
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH--E----AM----LK---I-NEHMHRLWKN--QVAEKSL 103 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~--~----f~----~~---~-~~~i~~~~~~--~~~~~t~ 103 (454)
..++.-++|+|+||||||||+++|+|.+++ ..| .+.++ + .. .. . ...+.++.+. ....+++
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 107 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANYLP-DSG--RILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSA 107 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--eEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccH
Confidence 346788999999999999999999999874 233 44443 1 10 00 1 1234455544 2344566
Q ss_pred hhhhhccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 104 RSSISGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 104 ~e~l~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
.+++.... ...... ...+..++..+++.... .......+++++ +||+.+|++|+||||+ ++|+
T Consensus 108 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 182 (224)
T TIGR02324 108 LEVVAEPLLERGVPREAARARARELLARLNIPERL-----WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 66652211 111111 12334444444442210 011223344443 6888999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 172 FAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.++..+.++|.++.++|. +|++||+.
T Consensus 183 ~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 183 ANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999999987776 89999984
No 139
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.62 E-value=6.9e-16 Score=149.16 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK-INEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~-~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..++.-++|+|+||||||||+++|+|.+++ ..| .+.+.+.. .. ....++++.+. ..+..|+.+++...
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 101 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEG--SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELA 101 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCC--eEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHh
Confidence 356788999999999999999999999864 233 44443321 01 11235555554 34456777776321
Q ss_pred ccC----------CCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 111 ITN----------LPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 111 ~~~----------~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
... ... ....+++++..+++... .......+++++ +|++.+|++|+||||+ ++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD 175 (242)
T TIGR03411 102 LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE------ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175 (242)
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence 110 000 11234455555554321 122233445444 6889999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 171 VFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
+.++..+.++|.++.+..++|++||+.
T Consensus 176 ~~~~~~l~~~l~~~~~~~tii~~sH~~ 202 (242)
T TIGR03411 176 DEETEKTAELLKSLAGKHSVVVVEHDM 202 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 999999999999997633488889873
No 140
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.62 E-value=1.2e-15 Score=141.48 Aligned_cols=131 Identities=21% Similarity=0.199 Sum_probs=81.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhhhhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKNQVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~~~~~~t~~e~l~~~~~ 112 (454)
..++.-++|+|+||+|||||+++|+|..++. . +.+.+++.. ......+.++ ++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~~i~~~--------------~q~~~ 85 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPA-S--GEITLDGKPVTRRSPRDAIRAGIAYV--------------PEDRK 85 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--ceEEECCEECCccCHHHHHhCCeEEe--------------cCCcc
Confidence 3467789999999999999999999998742 3 344443311 0011112222 22211
Q ss_pred --CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882 113 --NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT 189 (454)
Q Consensus 113 --~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~ 189 (454)
......+..+++.....+.+. ......+| +|++.+|++|+||||+ ++|+.++..+.+++.++.++|.
T Consensus 86 ~~~~~~~~t~~e~l~~~~~LS~G---~~qrl~la-------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 155 (182)
T cd03215 86 REGLVLDLSVAENIALSSLLSGG---NQQKVVLA-------RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155 (182)
T ss_pred cCcccCCCcHHHHHHHHhhcCHH---HHHHHHHH-------HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 122223455554332111110 00112233 4566899999999999 8999999999999999977676
Q ss_pred -EEEEecCC
Q 012882 190 -VLVATSNR 197 (454)
Q Consensus 190 -vlV~ThN~ 197 (454)
+|++||+.
T Consensus 156 tiii~sh~~ 164 (182)
T cd03215 156 AVLLISSEL 164 (182)
T ss_pred EEEEEeCCH
Confidence 88888874
No 141
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.62 E-value=4.1e-16 Score=150.70 Aligned_cols=152 Identities=17% Similarity=0.174 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhH----HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAM----LK-INEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~----~~-~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..++.-++|+||||||||||+++|+|.. ++ ..|...+...... .. ....+.++.|. ..+..|+.+++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence 3567789999999999999999999985 32 3343333222110 01 11224444444 33445666655211
Q ss_pred c---cCC----CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHH-Hhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 111 I---TNL----PFD----SKVMEWVAAEEKYKQEVQMKNILPAVAD-KFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 111 ~---~~~----~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~-~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
. ... ..+ ....+.++..+++.... ...... .+++++ ++|+.+|++|+||||+ ++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 176 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF-----LNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhh-----cccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 1 000 011 12334445545542110 011111 244443 6888999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 171 VFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++..+.++|.++.++|. ||++||+.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 177 IDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 9999999999999987776 99999984
No 142
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.62 E-value=1.3e-15 Score=145.93 Aligned_cols=153 Identities=15% Similarity=0.093 Sum_probs=95.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhh-hcccchhhhhhcc--c
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQ-VAEKSLRSSISGW--I 111 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~-~~~~t~~e~l~~~--~ 111 (454)
...+++-++|+||||||||||+++|+|..++ ..|...+...... ......+.++.+.. ....|+.+++... .
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~ 107 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQI 107 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhh
Confidence 3456788999999999999999999998864 2443333222111 12334455555541 1123666665211 1
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR 183 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~ 183 (454)
..........+.++..+++... ........+++++ ++|+.+|++|+||||+ ++|+..+..+.++|.+
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 108 RNQQPDPAIFLDDLERFALPDT-----ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred cCCChHHHHHHHHHHHcCCChH-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1111112334455555555211 0111122334333 6888999999999999 8999999999999999
Q ss_pred HHhC-Cc-EEEEecCC
Q 012882 184 LLST-GT-VLVATSNR 197 (454)
Q Consensus 184 L~~~-G~-vlV~ThN~ 197 (454)
+.++ |. +|++||+.
T Consensus 183 ~~~~~~~tvii~sh~~ 198 (225)
T PRK10247 183 YVREQNIAVLWVTHDK 198 (225)
T ss_pred HHHhcCCEEEEEECCh
Confidence 9764 66 89999985
No 143
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.62 E-value=8.7e-16 Score=149.90 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=97.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh--hcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ--VAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~ 111 (454)
..+++-++|+|+||+|||||+++|+|.+++ ..| ++.+++. .......+.++.++. ....|+.+++....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 100 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRP-DAG--TVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGR 100 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCC--EEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcc
Confidence 356788999999999999999999999874 233 4444321 112233456666652 34467777763221
Q ss_pred -c--C---CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 112 -T--N---LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 112 -~--~---~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
. . .... ...+..++..+++... .......+++++ +|++.+|++|+||||+ ++|+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 174 (256)
T TIGR03873 101 IPHRSLWAGDSPHDAAVVDRALARTELSHL------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174 (256)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 1 0 0111 1234445555554321 111122344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++|.++.++|. +|++||+.
T Consensus 175 ~l~~~l~~~~~~~~tiii~sH~~ 197 (256)
T TIGR03873 175 ETLALVRELAATGVTVVAALHDL 197 (256)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999987776 88888874
No 144
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.6e-15 Score=150.23 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=99.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccC-ceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKH-RQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISG 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~-k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~ 109 (454)
.+++.-++|+||||||||||+++|+|.+++. .+ .+.+.+++. .......++++.|.. ....|+.+++..
T Consensus 30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~-~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~ 108 (282)
T PRK13640 30 IPRGSWTALIGHNGSGKSTISKLINGLLLPD-DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108 (282)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcccCCC-CCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence 3466779999999999999999999998642 21 134444331 112334556665542 345677777732
Q ss_pred cccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 110 WITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 110 ~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
......... ..++.++..+++... .......+++++ +||+.+|+||+||||+ ++|+..+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l 182 (282)
T PRK13640 109 GLENRAVPRPEMIKIVRDVLADVGMLDY------IDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182 (282)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCChhH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 211111122 234455555555321 112223444443 6888999999999999 8999999999
Q ss_pred HHHHHHHHhC-Cc-EEEEecCCC
Q 012882 178 SGIVSRLLST-GT-VLVATSNRA 198 (454)
Q Consensus 178 ~~ll~~L~~~-G~-vlV~ThN~~ 198 (454)
.++|..+.+. |. ||++||+..
T Consensus 183 ~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 183 LKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999764 76 999999853
No 145
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.61 E-value=2.3e-15 Score=143.59 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=97.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
...++-++|+|+||||||||+++|+|..++ ..|...+...... ....+.+.++.+. .....|+.+++...
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~ 106 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA 106 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHH
Confidence 346788999999999999999999999874 2333333222111 1223445555554 33446777766221
Q ss_pred ccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 111 ITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 111 ~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.... .... ..+++++..+++.. ........+++++ ++++.+|++|+||||+ ++|+..++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 180 (220)
T TIGR02982 107 LELQPNLSYQEARERARAMLEAVGLGD------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180 (220)
T ss_pred HHhccCCCHHHHHHHHHHHHHHcCChh------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 1110 1111 23445555555532 1222334455544 6889999999999999 8999999999
Q ss_pred HHHHHHHHh-CCc-EEEEecCC
Q 012882 178 SGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
.++|.++.+ .|+ +|++||+.
T Consensus 181 ~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 181 VELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 999999876 466 88888874
No 146
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=7.4e-16 Score=153.18 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=93.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhhh---hcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKNQ---VAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~~---~~~~t~~e~l~ 108 (454)
.++.-++|+|+||||||||+++|+|.+++ ..|...+..... .......++++.+.. ....|+.+++.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 113 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIIS-ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIA 113 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHH
Confidence 46778999999999999999999999874 234333322111 112233455555542 11236666662
Q ss_pred ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.......... ..++.++..+++.. .........+++++ +||+.+|+||+||||+ ++|+.++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 114 FGPVNLGENKQEAYKKVPELLKLVQLPE-----DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCCh-----hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 2111111111 22334444444411 01112234455554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhC-Cc-EEEEecCC
Q 012882 177 LSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+.++|.++.+. |+ ||++||+.
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999764 76 88889874
No 147
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=8.6e-16 Score=158.86 Aligned_cols=149 Identities=9% Similarity=0.116 Sum_probs=99.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HHH----HHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LKI----NEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~~----~~~i~~~~~~--~~~~~t~~e~l 107 (454)
...+.-++|+||||||||||+++|+|.+++. .| .+.+++. . ... ++.++++.|. ..+.+|+.+++
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-sG--~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl 127 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-RG--QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT 127 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CC--EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHH
Confidence 4567779999999999999999999998742 34 4444321 1 011 1245566655 34556788777
Q ss_pred hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ...... ...+++++..+++.. ........+++++ +||+.+|++|+||||+ +||+..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~L~~~gL~~------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~ 201 (400)
T PRK10070 128 AFGMELAGINAEERREKALDALRQVGLEN------YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCh------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 3221 111111 123445555555532 1223334556554 6899999999999999 89999999
Q ss_pred HHHHHHHHHHh-CCc-EEEEecCC
Q 012882 176 ALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
.+.++|.++.+ .|+ +|++||+.
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCH
Confidence 99999999975 466 89999985
No 148
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.7e-15 Score=144.43 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh---hhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN---QVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~ 111 (454)
...++.++|+|+||||||||++++.|.+++. .+...+..... ...+.+.++++.|. +.-..|+.+.+...+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~-~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~ 105 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL 105 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCC-CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhch
Confidence 3456789999999999999999999999753 44443322111 22233333333332 111223333332222
Q ss_pred cCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 112 TNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 112 ~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.....+. .++++.+...++... ..+-...|++++ .+|+.+|++|+||||| +||+..+..+.+
T Consensus 106 ~n~g~~~~e~~~rv~~~l~~vgl~~~------~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~ 179 (235)
T COG1122 106 ENLGLPREEIEERVAEALELVGLEEL------LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 (235)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCchhh------ccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 2222221 223333333333221 111122334333 3677999999999999 899999999999
Q ss_pred HHHHHHhC-Cc-EEEEecCC
Q 012882 180 IVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~-G~-vlV~ThN~ 197 (454)
++.+|... |. +|++||+.
T Consensus 180 ~l~~L~~~~~~tii~~tHd~ 199 (235)
T COG1122 180 LLKKLKEEGGKTIIIVTHDL 199 (235)
T ss_pred HHHHHHhcCCCeEEEEeCcH
Confidence 99999987 44 99999985
No 149
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.61 E-value=8.9e-16 Score=150.77 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=87.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPF 116 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~ 116 (454)
...++.-++|+|+||||||||+++|+|.+++. .| .+.+++-. ....+. .....++.+++.........
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~-~G--~I~~~g~~-------~~~~~~~~~~~~~tv~enl~~~~~~~~~ 115 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VG--KVDRNGEV-------SVIAISAGLSGQLTGIENIEFKMLCMGF 115 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ce--EEEECCEE-------eEEecccCCCCCCcHHHHHHHHHHHcCC
Confidence 34567889999999999999999999998742 33 33333210 001111 22334555555211110011
Q ss_pred ChH----HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 117 DSK----VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 117 ~~~----~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
... ..+.++...++.. .+......+++++ +|++.+|++|+||||+ ++|+..+..+.+++..+
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 116 KRKEIKAMTPKIIEFSELGE------FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred CHHHHHHHHHHHHHHcCCch------hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 111 1122333333321 1111233444443 6888999999999999 89999999999999999
Q ss_pred HhCCc-EEEEecCC
Q 012882 185 LSTGT-VLVATSNR 197 (454)
Q Consensus 185 ~~~G~-vlV~ThN~ 197 (454)
.+.|. +|++||+.
T Consensus 190 ~~~g~tiIiisH~~ 203 (264)
T PRK13546 190 KEQNKTIFFVSHNL 203 (264)
T ss_pred HHCCCEEEEEcCCH
Confidence 77776 88899974
No 150
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.3e-15 Score=146.63 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=94.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H--HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M--LKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~--~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
..+++-++|+|+||+|||||+++|+|..++. .| .+.+.+. . ....+.+.++.++ .....++.+++......
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~-~G--~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~ 99 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SG--EILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL 99 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ce--EEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHh
Confidence 3567889999999999999999999998742 33 3433321 0 0122344555544 22345666665211111
Q ss_pred CCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 114 LPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 114 ~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
...+ ....+.++..+++.. .+......+++++ ++++.+|++|+||||+ ++|+.++..+.++|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l 173 (232)
T cd03300 100 KKLPKAEIKERVAEALDLVQLEG------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL 173 (232)
T ss_pred cCCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1111 123344444444432 1222334455544 6889999999999999 89999999999999
Q ss_pred HHHHhC-Cc-EEEEecCC
Q 012882 182 SRLLST-GT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~ 197 (454)
.++.++ |. +|++||+.
T Consensus 174 ~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 174 KRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHHHHHcCCEEEEEeCCH
Confidence 999864 66 88888874
No 151
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.61 E-value=1.4e-15 Score=149.41 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=96.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhhh----hcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKNQ----VAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~~----~~~~t~~e~ 106 (454)
..++.-++|+|+||||||||+++|+|..++ ..| .+.+++.. ....+.++++.+.. ....++.++
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~ 110 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQG--TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQI 110 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHH
Confidence 456788999999999999999999999874 233 44443210 11234456665542 234567666
Q ss_pred hhccc---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 107 ISGWI---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 107 l~~~~---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
+.... ...... ...+++++..+++.. .........+++++ +||+.+|++|+||||+ +||+..
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~ 185 (265)
T TIGR02769 111 IGEPLRHLTSLDESEQKARIAELLDMVGLRS-----EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL 185 (265)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-----hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 52211 111111 123445555555521 11122233445444 6888999999999999 899999
Q ss_pred HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 174 IVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+..+.++|.++.+. |. +|++||+.
T Consensus 186 ~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 186 QAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 99999999999864 66 89999984
No 152
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.61 E-value=1.8e-15 Score=144.79 Aligned_cols=148 Identities=21% Similarity=0.151 Sum_probs=95.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-HHHHHHHHHHhhhhh----cccchhhhhhcccc---
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LKINEHMHRLWKNQV----AEKSLRSSISGWIT--- 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~~~----~~~t~~e~l~~~~~--- 112 (454)
.+++-++|+|+||||||||+++|+|..++ .. +.+.+++.- ....+.+.++.+... ...++.+++.....
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPP-AK--GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 45788999999999999999999998864 23 344443321 122234555555421 12456666522111
Q ss_pred C-C--CC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 N-L--PF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~-~--~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. . .. ....+++++..+++... .......+++++ ++|+.+|++|+||||+ ++|+.++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTEL------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 0 11 11234455555555321 122233444443 6889999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
++.++.++|. +|++||+.
T Consensus 155 ~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDL 173 (223)
T ss_pred HHHHHHHcCCEEEEEeCCH
Confidence 9999987776 89999974
No 153
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.2e-15 Score=146.58 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=90.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
..++.-++|+||||||||||+++|+|..++ .. +.+.+.+. .....+.+.++.+. .....|+.+++.....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 101 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDV-DS--GRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP 101 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccC-CC--CEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCC
Confidence 346777999999999999999999999874 23 44554331 11223445555544 1112466666632211
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. ......+......++.... +...........+++++ +||+.+|++|+||||+ ++|+.+...+.+
T Consensus 102 ~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 179 (234)
T cd03251 102 G--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179 (234)
T ss_pred C--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 1 1112222221111111100 00001111122344443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|.++.+ |. +|++||+.
T Consensus 180 ~l~~~~~-~~tii~~sh~~ 197 (234)
T cd03251 180 ALERLMK-NRTTFVIAHRL 197 (234)
T ss_pred HHHHhcC-CCEEEEEecCH
Confidence 9999965 65 88999985
No 154
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.9e-15 Score=148.73 Aligned_cols=149 Identities=14% Similarity=0.176 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..++.-++|.||||||||||+++|+|.+++ .. +.+.+.+. .....+.+.++.+.. ....++.+++...
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~ 108 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KS--GEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cc--eEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence 356788999999999999999999999874 23 34444331 123344455555542 2233444444211
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
........ ..++.++..+++... .......+++++ +|++.+|++|+||||+ ++|+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 109 LENHAVPYDEMHRRVSEALKQVDMLER------ADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11111111 233444454444221 111223344443 6888999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. +|++||+.
T Consensus 183 ~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 183 DLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred HHHHHHHHhcCCEEEEEecCc
Confidence 999999764 66 88899885
No 155
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=9.9e-16 Score=163.86 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKN-----QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~-----~~~~~t~~e~l 107 (454)
..++.-++|+||||||||||+++|+|..++ ..| .+.+++ . .....+.++++.|. ..+.+|+.+++
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G--~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKR-AGG--EIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNM 362 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCC--eEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHh
Confidence 345677999999999999999999999864 233 444432 1 11223346677664 34456788876
Q ss_pred hcccc----------CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 108 SGWIT----------NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 108 ~~~~~----------~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
..... ...... ..+++++..+++.. +........+++++ ++|+.+|+||+||||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 363 AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-----HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred ccccccccccccccccccChHHHHHHHHHHHHhcCCCC-----CCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 32111 000011 23445566655521 11223344566654 6888999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 168 -TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 168 -~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+||+..+..+.++|..+.++|. ||++||+.
T Consensus 438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 8999999999999999987776 99999984
No 156
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.61 E-value=1.1e-15 Score=148.23 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=97.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCccc--CceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~--~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+|+||||||||+++|+|..++... ..+++.+++. ....+..+.++++. ... .|+.+++
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l 102 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNI 102 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHH
Confidence 356788999999999999999999999864200 1455555332 11234456666655 233 6777776
Q ss_pred hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ....... ..++.++..+++.... ...+......+++++ +||+.+|++|+||||+ ++|+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 180 (247)
T TIGR00972 103 AYGPRLHGIKDKKELDEIVEESLKKAALWDEV--KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180 (247)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3211 1111111 2334455555542000 011112223444444 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|..+.+..++|++||+.
T Consensus 181 ~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 181 GKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred HHHHHHHHHHHhcCeEEEEecCH
Confidence 99999999997754499999984
No 157
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=162.80 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=103.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+||||||||||+++|+|.+++. ...+.+.+++.. ...++.++++.|+ ....+|+.+++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 106 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG 106 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhc
Confidence 3467789999999999999999999988741 123455543311 1122346666665 34557888877322
Q ss_pred ccCC---CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 111 ITNL---PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 111 ~~~~---~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ..+. ..+++++..+++.. ........+++++ +||+.+|+||+||||+ +||+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~ 180 (506)
T PRK13549 107 NEITPGGIMDYDAMYLRAQKLLAQLKLDI------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETA 180 (506)
T ss_pred ccccccCCcCHHHHHHHHHHHHHHcCCCC------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 1110 1111 23455566555521 1223345566665 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCCCcc
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNRAPW 200 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~~P~ 200 (454)
.+.++|.++.++|. ||++||+....
T Consensus 181 ~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 181 VLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 99999999987776 99999986433
No 158
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.61 E-value=3e-15 Score=144.27 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=92.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhccccC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWITN 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~ 113 (454)
.+++-++|+|+||||||||+++|+|..++ ..| .+.+++.. ....+.+.++.|.. ....|+.+++......
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~ 102 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENG--RVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG 102 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCC--EEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCC
Confidence 46778999999999999999999999874 233 45444321 12233455555541 1234666666322111
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
.........+...++.... +....+..-...+++++ +|++.+|++|+||||+ ++|+.....+.++
T Consensus 103 --~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 180 (237)
T cd03252 103 --MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180 (237)
T ss_pred --CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1122222222222221110 00111122234455554 6889999999999999 8999999999999
Q ss_pred HHHHHhCCc-EEEEecCC
Q 012882 181 VSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~~G~-vlV~ThN~ 197 (454)
|..+.+ |. +|++||+.
T Consensus 181 l~~~~~-~~tiii~sH~~ 197 (237)
T cd03252 181 MHDICA-GRTVIIIAHRL 197 (237)
T ss_pred HHHhcC-CCEEEEEeCCH
Confidence 999964 66 88899874
No 159
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=3.3e-15 Score=143.14 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=92.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||+++|+|.+++ .. +.+.++.. .......+.++.+.. ....++.+++.....
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~ 102 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDP-QK--GQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP 102 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CC--CEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCC
Confidence 346677999999999999999999999874 23 34444331 112334455555541 112366666532211
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.......+..+...++.... +...........+++++ ++|+.+|++|+||||+ +||+..+..+.+
T Consensus 103 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 180 (229)
T cd03254 103 --NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 (229)
T ss_pred --CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 11222233333333322111 01111111123444444 6889999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|..+. +|. +|++||+.
T Consensus 181 ~l~~~~-~~~tii~~sh~~ 198 (229)
T cd03254 181 ALEKLM-KGRTSIIIAHRL 198 (229)
T ss_pred HHHHhc-CCCEEEEEecCH
Confidence 999986 466 88999985
No 160
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.60 E-value=6.2e-16 Score=156.58 Aligned_cols=150 Identities=11% Similarity=0.162 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh----hhcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN----QVAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~----~~~~~t~~e~ 106 (454)
...++-++|+|+||||||||+++|+|.+++ .. +.+.+.+. ....+..+.++.|. ..+.+++.++
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~--G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~ 120 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKA-TD--GEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEI 120 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CC--cEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHH
Confidence 356778999999999999999999999874 23 44555331 11223345555554 2334566666
Q ss_pred hhccccCC--CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 107 ISGWITNL--PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 107 l~~~~~~~--~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
+....... ..+. ..+++++..+++.. .........+++++ +||+.+|+||++|||+ +||+.
T Consensus 121 i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-----~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~ 195 (331)
T PRK15079 121 IAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-----NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195 (331)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 53211110 0111 23344444444421 11122234556555 6899999999999999 89999
Q ss_pred HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+..+.++|.++.++ |. +|++|||.
T Consensus 196 ~~~~i~~lL~~l~~~~~~til~iTHdl 222 (331)
T PRK15079 196 IQAQVVNLLQQLQREMGLSLIFIAHDL 222 (331)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999999999999874 77 99999985
No 161
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.60 E-value=2.6e-15 Score=144.78 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=91.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+|+||||||||+++|+|.+++ ..| .+.+++.. ......+.++.+.. ....|+.+++.....
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 102 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSG--EILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP 102 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCC--EEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCC
Confidence 356788999999999999999999999874 244 44443311 11223345554431 112466666632211
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. .........+...++.... +...........+++++ ++|+.+|++|+||||+ ++|+..+..+.+
T Consensus 103 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~ 180 (238)
T cd03249 103 D--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180 (238)
T ss_pred C--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 1 1112222222222221100 00000111123344443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|..+. +|. +|++||+.
T Consensus 181 ~l~~~~-~g~~vi~~sh~~ 198 (238)
T cd03249 181 ALDRAM-KGRTTIVIAHRL 198 (238)
T ss_pred HHHHhc-CCCEEEEEeCCH
Confidence 999987 676 89999984
No 162
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.60 E-value=4.3e-15 Score=141.53 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=94.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
..+++-++|+||||||||||+++|+|..++ .. +.+.+.+.. ......+.++.+.. ....|+.+++.....
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 103 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-TS--GSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP 103 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CC--CeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCC
Confidence 356788999999999999999999999864 23 445554321 12233455555541 112466666532111
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcc-----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKN-----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~-----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.......+.++..+++........ .+......+++++ +|++.+|++|+||||+ +||+.++..+.+
T Consensus 104 --~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 181 (220)
T cd03245 104 --LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKE 181 (220)
T ss_pred --CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 112233344444444432111000 0000112455554 6888999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCC
Q 012882 180 IVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~ 197 (454)
+|.++.+..++|++||+.
T Consensus 182 ~l~~~~~~~tii~~sH~~ 199 (220)
T cd03245 182 RLRQLLGDKTLIIITHRP 199 (220)
T ss_pred HHHHhcCCCEEEEEeCCH
Confidence 999987654499999985
No 163
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=4e-15 Score=145.14 Aligned_cols=151 Identities=11% Similarity=0.144 Sum_probs=102.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
.+.+.-++++|.+|+|||||++++.+.-.| ..|+..+...+. ....++.++.+.|+ +....|+.+|+...
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-tsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P 107 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP 107 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence 456677999999999999999999987764 355555544221 23455666666665 34456677766222
Q ss_pred --ccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 --ITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 --~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
..+.+... .++.++++..++.++. .....++++++ |||+.+|+||+.||+| .|||.+...+.
T Consensus 108 Leiag~~k~ei~~RV~elLelVgL~dk~------~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL 181 (339)
T COG1135 108 LELAGVPKAEIKQRVAELLELVGLSDKA------DRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181 (339)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCChhhh------ccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 22222221 3444555555554322 22233455554 7999999999999999 79999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|..+.++ |. ++++||.+
T Consensus 182 ~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 182 ELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred HHHHHHHHHcCCEEEEEechH
Confidence 999999865 87 99999974
No 164
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.60 E-value=1.6e-15 Score=145.80 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=94.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechh--HH-HH-HHHHHHHhhhh----hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEA--ML-KI-NEHMHRLWKNQ----VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f--~~-~~-~~~i~~~~~~~----~~~~t~~e~l~~~ 110 (454)
..+++-++|+||||+|||||+++|+|.+++. ....+.+.+.+. .. .. ...+.++.++. .+..++.+++...
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 3467889999999999999999999998741 002334444331 11 11 12355555542 1234555554221
Q ss_pred c--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 I--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
. ...... ...+++++..+++... ..........+++++ +|++.+|+||+||||+ ++|+.+...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~ 165 (230)
T TIGR02770 89 LRSLGKLSKQARALILEALEAVGLPDP---EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165 (230)
T ss_pred HHHcCccHHHHHHHHHHHHHHcCCCch---HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 1 111111 1234455555555310 011122233445444 6888999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. ||++||+.
T Consensus 166 ~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 166 KLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCH
Confidence 999999764 66 88888874
No 165
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.60 E-value=4e-15 Score=136.79 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
.+++-++|.||||+|||||+++|+|..++. . +.+.+++.. ......+.++ ++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~i~~~--------------~q~~~-- 86 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPT-S--GRVRLDGADISQWDPNELGDHVGYL--------------PQDDE-- 86 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCC-C--CeEEECCEEcccCCHHHHHhheEEE--------------CCCCc--
Confidence 456779999999999999999999998742 3 344443311 0111222222 22211
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV 192 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV 192 (454)
.+..++.+++ +.+ .......+| +||+.+|++|+||||+ ++|+.++..+.+++..+.++|. +|+
T Consensus 87 ~~~~tv~~~l-----LS~---G~~qrv~la-------~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 151 (173)
T cd03246 87 LFSGSIAENI-----LSG---GQRQRLGLA-------RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151 (173)
T ss_pred cccCcHHHHC-----cCH---HHHHHHHHH-------HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1112444443 110 000112233 4556899999999999 8999999999999999987777 888
Q ss_pred EecCC
Q 012882 193 ATSNR 197 (454)
Q Consensus 193 ~ThN~ 197 (454)
+||+.
T Consensus 152 ~sh~~ 156 (173)
T cd03246 152 IAHRP 156 (173)
T ss_pred EeCCH
Confidence 99884
No 166
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.60 E-value=1.8e-15 Score=148.66 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=93.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh----hcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ----VAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~----~~~~t~~e~l~~~~ 111 (454)
..++.-++|+|||||||||||++|+|.+++ ..|...+..... .......+.++.+.. .+..++.+++....
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 114 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL 114 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHH
Confidence 456788999999999999999999999875 244333322211 111223355555442 22334444442111
Q ss_pred c-CCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 112 T-NLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 112 ~-~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
. ..... .+.++.++..+++... ........+++++ ++|+.+|+||+||||+ ++|+..+..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 189 (267)
T PRK15112 115 RLNTDLEPEQREKQIIETLRQVGLLPD-----HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189 (267)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCChH-----HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHH
Confidence 0 00011 1234455555555211 0111223455444 6888999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCC
Q 012882 179 GIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|.++.++ |. ||++||+.
T Consensus 190 ~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 190 NLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred HHHHHHHHHcCcEEEEEeCCH
Confidence 999999764 66 89999984
No 167
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.60 E-value=1.5e-15 Score=162.05 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=101.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
...++-++|+||||||||||+++|+|.+++. .| .+.+++ . .....+.++++.|. ....+|+.+++...
T Consensus 27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 103 (501)
T PRK10762 27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AG--SILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLG 103 (501)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--EEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhc
Confidence 3467889999999999999999999998742 33 444432 1 01112335566554 34557888877322
Q ss_pred ccC---C-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 111 ITN---L-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 111 ~~~---~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
... . ..+. ..+++++..+++.. ........+++++ +||+.+|+||+||||+ +||+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 177 (501)
T PRK10762 104 REFVNRFGRIDWKKMYAEADKLLARLNLRF------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177 (501)
T ss_pred cccccccCccCHHHHHHHHHHHHHHcCCCC------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHH
Confidence 110 0 0111 23445555555532 1223345566665 6889999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNRAP 199 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~~P 199 (454)
..+.+++.++.+.|. ||++||+...
T Consensus 178 ~~l~~~l~~l~~~~~tvii~sHd~~~ 203 (501)
T PRK10762 178 ESLFRVIRELKSQGRGIVYISHRLKE 203 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999999987776 9999998653
No 168
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.60 E-value=2e-15 Score=145.74 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=95.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~ 113 (454)
..+++-++|.|+||||||||+++|+|.+++ .. +.+.+.+.. ......+.++++. .....|+.+++......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~--G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~ 99 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DS--GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEI 99 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cc--eEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHh
Confidence 356788999999999999999999999874 23 344443211 0112334555544 33445677766322111
Q ss_pred CCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 114 LPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 114 ~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
.... ....++++..+++... .......+++++ ++++.+|++|+||||+ ++|+.++..+.++|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 173 (237)
T TIGR00968 100 RKHPKAKIKARVEELLELVQLEGL------GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173 (237)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1111 1233444444444221 122233455544 6888999999999999 89999999999999
Q ss_pred HHHHhC-Cc-EEEEecCC
Q 012882 182 SRLLST-GT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~-G~-vlV~ThN~ 197 (454)
.++.++ |. +|++||+.
T Consensus 174 ~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 174 RKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHHHHhcCCEEEEEeCCH
Confidence 999775 65 88888874
No 169
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.60 E-value=3.8e-16 Score=157.87 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=92.1
Q ss_pred EEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--CCCCC--
Q 012882 48 LYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT--NLPFD-- 117 (454)
Q Consensus 48 L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~--~~~~~-- 117 (454)
|+||||||||||+++|+|..++. . +.+.+++.. ....+.+.++.|. ..+.+|+.+++..... .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~-~--G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD-S--GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC-c--eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 58999999999999999998742 3 445443210 1122345555555 3455677777632211 11111
Q ss_pred hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-C
Q 012882 118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-G 188 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G 188 (454)
...+++++..+++.. ........+++++ +||+.+|++|+||||+ ++|+..+..+.++|.++.++ |
T Consensus 78 ~~~~~~~l~~~~l~~------~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 78 KPRVLEALRLVQLEE------FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred HHHHHHHHHHcCCcc------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 123344555555422 1222334555554 6889999999999999 89999999999999999764 7
Q ss_pred c-EEEEecCC
Q 012882 189 T-VLVATSNR 197 (454)
Q Consensus 189 ~-vlV~ThN~ 197 (454)
. +|++||+.
T Consensus 152 ~tiiivTHd~ 161 (325)
T TIGR01187 152 ITFVFVTHDQ 161 (325)
T ss_pred CEEEEEeCCH
Confidence 6 99999985
No 170
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.60 E-value=5.5e-15 Score=136.78 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=79.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~ 113 (454)
..+++-++|.|+||+|||||+++|+|..++ ..+ .+.+++. .......++++.+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G--~v~~~g~~~~~~~~~~~~~~i~~~~q------------------ 80 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSG--EILLDGKDLASLSPKELARKIAYVPQ------------------ 80 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEECCcCCHHHHHHHHhHHHH------------------
Confidence 346788999999999999999999999874 233 4444321 1122233444432
Q ss_pred CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL 185 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~ 185 (454)
++..+++... .......+++++ ++++.+|++|+||||+ ++|+.++..+.++|.++.
T Consensus 81 ----------~l~~~gl~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 81 ----------ALELLGLAHL------ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144 (180)
T ss_pred ----------HHHHcCCHhH------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1111121110 001112222222 5677999999999999 899999999999999997
Q ss_pred hC-Cc-EEEEecCC
Q 012882 186 ST-GT-VLVATSNR 197 (454)
Q Consensus 186 ~~-G~-vlV~ThN~ 197 (454)
++ |. +|++||+.
T Consensus 145 ~~~~~tiii~sh~~ 158 (180)
T cd03214 145 RERGKTVVMVLHDL 158 (180)
T ss_pred HhcCCEEEEEeCCH
Confidence 75 66 88888874
No 171
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.2e-15 Score=150.33 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=92.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--HHHHH-HHHHHHhhhhh----cccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--MLKIN-EHMHRLWKNQV----AEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~~~~~-~~i~~~~~~~~----~~~t~~e~l~~~~~ 112 (454)
..++.-++|+||||||||||+++|+|.+++ .. +.+.+.+. ..... ..+.++++... ...++.+++.....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~ 106 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFVRL-AS--GKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY 106 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccc
Confidence 346788999999999999999999999874 23 44544332 11111 12455554421 11234444421100
Q ss_pred ---C---CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 113 ---N---LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 113 ---~---~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
. .... ...++.++..+++.... ......+++++ +||+.+|+||+||||+ ++|+.++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 180 (272)
T PRK15056 107 GHMGWLRRAKKRDRQIVTAALARVDMVEFR------HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR 180 (272)
T ss_pred cccccccCCCHHHHHHHHHHHHHcCChhHh------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 0 0101 12334455555553211 11223344443 6888999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|..+.++|. ||++||+.
T Consensus 181 l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 181 IISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred HHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999987776 89999984
No 172
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.60 E-value=4e-15 Score=141.81 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+|+||||||||+++|+|..++ .. +.+.+++.. ....+.+.++.+.. ....|+.+++....
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~- 102 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SS--GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG- 102 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCC-CC--CEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCC-
Confidence 356788999999999999999999998864 23 344443321 12334455555441 12236666652110
Q ss_pred CCCCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
..........+..+++..... ...........+++++ ++|+.+|++|+||||+ ++|+.++..+.+
T Consensus 103 --~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~ 180 (221)
T cd03244 103 --EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180 (221)
T ss_pred --CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 112223333334333322110 0000111222344443 6889999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCC
Q 012882 180 IVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~ 197 (454)
+|..+.+...+|++||+.
T Consensus 181 ~l~~~~~~~tii~~sh~~ 198 (221)
T cd03244 181 TIREAFKDCTVLTIAHRL 198 (221)
T ss_pred HHHHhcCCCEEEEEeCCH
Confidence 999986543488999874
No 173
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.1e-15 Score=148.42 Aligned_cols=156 Identities=16% Similarity=0.181 Sum_probs=93.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~ 106 (454)
...++.-++|+|+||||||||+++|+|..++.. ...+.+.+.+. ....++.+.++.+. ... .|+.++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 113 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYEN 113 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHH
Confidence 345677899999999999999999999875200 12344444321 12334456666655 222 377777
Q ss_pred hhccccCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 107 ISGWITNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 107 l~~~~~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
+.......... ...++.++..+++... ...........+++++ +||+.+|++|+||||+ +||+..+.
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~ 191 (269)
T PRK14259 114 IAFGARINGYTGDMDELVERSLRKAAVWDE--CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL 191 (269)
T ss_pred HhhhhhhcCCcHHHHHHHHHHHHHhCCcch--hhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 63211111111 1223334444433110 0001111123344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+..++|++||+.
T Consensus 192 ~l~~~l~~~~~~~tiiivtH~~ 213 (269)
T PRK14259 192 KIEETMHELKKNFTIVIVTHNM 213 (269)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999996533389999984
No 174
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.60 E-value=2.5e-15 Score=146.17 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
...+.-++|+|+||||||||+++|+|..+ .. +.+.+++. .......+.++.+. .....|+.+++....
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~~--G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~ 94 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLLP--GS--GSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQ 94 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC--CC--eEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcC
Confidence 35678899999999999999999999875 23 44544331 11223345566554 234467777763221
Q ss_pred c-CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhcc-------CCcEEEeeCCC-CCCHHH
Q 012882 112 T-NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQR-------GASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 112 ~-~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~-------~p~lL~LDEp~-~lD~~~ 173 (454)
. ..... ....++++..+++... .......+++++ +||+. +|++|+||||+ ++|+..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 95 PDKTRTEAVASALNEVAEALGLDDK------LGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCHhH------hcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 1 11111 1334555665555321 111223344443 57776 67999999999 899999
Q ss_pred HHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 174 IVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+..+.++|.++.++|. +|++||+.
T Consensus 169 ~~~l~~~L~~~~~~~~tvi~~sH~~ 193 (248)
T PRK03695 169 QAALDRLLSELCQQGIAVVMSSHDL 193 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCH
Confidence 9999999999987776 88999984
No 175
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.59 E-value=1.2e-15 Score=156.87 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----H-----HH---HH-HHHHHHhhh--hhcccch
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----M-----LK---IN-EHMHRLWKN--QVAEKSL 103 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~-----~~---~~-~~i~~~~~~--~~~~~t~ 103 (454)
...++-++|+|+||||||||+++|+|.+++. .| .+.+.+. . .. .+ ..+.++.|. ..+..|+
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G--~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv 123 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RG--SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTV 123 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-Cc--EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcH
Confidence 4566779999999999999999999998742 34 4444321 0 01 11 235555554 3445677
Q ss_pred hhhhhcccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 104 RSSISGWIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 104 ~e~l~~~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
.+++..... ..... ...+++++..+++... .......+++++ +||+.+|+||+||||+ +||+
T Consensus 124 ~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~------~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~ 197 (382)
T TIGR03415 124 EENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW------ADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP 197 (382)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 777632211 11111 1334555555555321 122234455554 7899999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 172 FAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
..+..+.++|.++.++ |. +|++||+.
T Consensus 198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl 225 (382)
T TIGR03415 198 LIRTQLQDELLELQAKLNKTIIFVSHDL 225 (382)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999999864 66 99999984
No 176
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=3e-15 Score=148.02 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=97.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h----HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A----MLKINEHMHRLWKNQ---VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|..++ ..| .+.+.+ . ....+..++++.+.. ....++.+++...
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~ 106 (277)
T PRK13642 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEG--KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG 106 (277)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCC--EEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhh
Confidence 346788999999999999999999999874 234 444432 1 123344566665542 3345777776322
Q ss_pred ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
........ ..++.++..+++.... ......+++++ +||+.+|++||||||+ ++|+.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 107 MENQGIPREEMIKRVDEALLAVNMLDFK------TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCHhHh------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11111111 2234444544442211 11123344443 6888999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCCC
Q 012882 179 GIVSRLLST-GT-VLVATSNRA 198 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~~ 198 (454)
++|.++.+. |. +|++||+..
T Consensus 181 ~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 181 RVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH
Confidence 999999874 76 899999854
No 177
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.4e-15 Score=146.56 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=94.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEech--h------HHHHHHHHHHHhhhh-hcccchhhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHE--A------MLKINEHMHRLWKNQ-VAEKSLRSSI 107 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~--f------~~~~~~~i~~~~~~~-~~~~t~~e~l 107 (454)
...++.-++|+|+||||||||+++|+|.+++.. ...+.+.+.+ . .......++++.|+. ....|+.+++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni 108 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNI 108 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHH
Confidence 345678899999999999999999999886420 0134444322 1 112344566666551 1136777776
Q ss_pred hccccCCC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWITNLP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~~~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
........ ... ..+++++..+++.... ..........+++++ ++|+.+|+||+||||+ ++|+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 186 (254)
T PRK14273 109 SYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV--KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186 (254)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHH
Confidence 32211111 111 2233333333331100 001111223444444 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|..+.+ +. +|++||+.
T Consensus 187 ~~l~~~l~~~~~-~~tvii~sH~~ 209 (254)
T PRK14273 187 GKIEELIINLKE-SYTIIIVTHNM 209 (254)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCH
Confidence 999999999964 55 88999974
No 178
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.4e-14 Score=134.45 Aligned_cols=181 Identities=15% Similarity=0.094 Sum_probs=119.3
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
...+++-+.|+||||+||||||+.|+|.+.+ ..+.+++++.. .++.+....++|. ....+++.|.+-..
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p---~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mG 99 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSP---DSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG 99 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCccCC---CCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhc
Confidence 4567888999999999999999999999864 23455554432 1223333444554 44556778877332
Q ss_pred ccCC-C-----CChHHHHHHHHHHhhhhHHh--------hcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 111 ITNL-P-----FDSKVMEWVAAEEKYKQEVQ--------MKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 111 ~~~~-~-----~~~~~~e~ll~~~~l~~~~~--------~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... . .+....+..+...++.+..+ -+...-++|+.+.+- -.-..++++|+||||+ .+|+..+.
T Consensus 100 r~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl-~~~v~~~r~L~LDEPtsaLDi~HQ~ 178 (259)
T COG4559 100 RIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL-WPPVPSGRWLFLDEPTSALDIAHQH 178 (259)
T ss_pred ccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc-cCCCCCCceEEecCCccccchHHHH
Confidence 2221 1 12244566666555543211 111122333333211 0112455799999999 79999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD 233 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D 233 (454)
...++.+.+...|. |+++-|+..-...|++++ ++.+.++++..+++.|
T Consensus 179 ~tl~laR~la~~g~~V~~VLHDLNLAA~YaDri----------vll~~Grv~a~g~p~~ 227 (259)
T COG4559 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRI----------VLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHHHHHHhcCCcEEEEEccchHHHHhhhee----------eeeeCCeEeecCCHHH
Confidence 99999999999888 999999999999999885 5678888888777643
No 179
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=6.4e-15 Score=141.83 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=91.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
..++.-++|+||||||||||+++|+|..++ .. +.+.+++. ....+..+.++.+. .....|+.+++.....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~--G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 100 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SS--GSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP 100 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCC-CC--CEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCC
Confidence 346778999999999999999999999874 23 44554331 11223344555444 1123466666622211
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. .........+...++.... +....+..-...+++++ +||+.+|++|+||||+ ++|+.+...+.+
T Consensus 101 ~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~ 178 (236)
T cd03253 101 D--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178 (236)
T ss_pred C--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 1122222222222221110 00001111122344443 7889999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|..+.+ |. +|++||+.
T Consensus 179 ~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 179 ALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred HHHHhcC-CCEEEEEcCCH
Confidence 9999976 76 88888874
No 180
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.59 E-value=4.3e-15 Score=144.87 Aligned_cols=141 Identities=17% Similarity=0.109 Sum_probs=90.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcc--cchhhhhhccccCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAE--KSLRSSISGWITNLP 115 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~--~t~~e~l~~~~~~~~ 115 (454)
..++.-++|+|+||||||||+++|+|.+++. . +.+.+.. ...+.++.+.. ... .++.+++... ..
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~-~--G~i~~~~-----~~~i~~v~q~~~~~~~l~~~~~~~~~~~---~~ 95 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-E--GVIKRNG-----KLRIGYVPQKLYLDTTLPLTVNRFLRLR---PG 95 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECC-----ccCEEEeccccccccccChhHHHHHhcc---cc
Confidence 3567889999999999999999999998642 3 4444432 11234444431 111 1233332110 01
Q ss_pred CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882 116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~ 187 (454)
.....+..++..+++... +......+++++ +||+.+|++|+||||+ ++|+.++..+.++|.++.++
T Consensus 96 ~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 169 (251)
T PRK09544 96 TKKEDILPALKRVQAGHL------IDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169 (251)
T ss_pred ccHHHHHHHHHHcCChHH------HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 122334455555555321 122234455554 6888999999999999 89999999999999999765
Q ss_pred -Cc-EEEEecCC
Q 012882 188 -GT-VLVATSNR 197 (454)
Q Consensus 188 -G~-vlV~ThN~ 197 (454)
|. +|++||+.
T Consensus 170 ~g~tiiivsH~~ 181 (251)
T PRK09544 170 LDCAVLMVSHDL 181 (251)
T ss_pred cCCEEEEEecCH
Confidence 66 88899984
No 181
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.9e-15 Score=158.56 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
.++.-++|+|+||||||||+++|+|.+++ ..| .+.+++ . ....+..++++.|. .....|+.+++....
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 98 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQK-DSG--SILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR 98 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCC-Cce--EEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccc
Confidence 45677999999999999999999999864 233 444332 1 11123345566655 334567888773221
Q ss_pred c---CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 112 T---NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 112 ~---~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
. ....+. ..+++++..+++.. ........+++++ +||+.+|+||+||||+ ++|+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 172 (491)
T PRK10982 99 YPTKGMFVDQDKMYRDTKAIFDELDIDI------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNH 172 (491)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCC------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Confidence 1 110111 23344555544421 1223345566665 6888999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
+.++|.++.+.|. ||++||+..
T Consensus 173 l~~~l~~l~~~g~tvii~tH~~~ 195 (491)
T PRK10982 173 LFTIIRKLKERGCGIVYISHKME 195 (491)
T ss_pred HHHHHHHHHhCCCEEEEEecCHH
Confidence 9999999987776 999999854
No 182
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.58 E-value=5.4e-15 Score=141.65 Aligned_cols=146 Identities=15% Similarity=0.128 Sum_probs=91.3
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
...+++-++|+|+||||||||+++|+|..++ .. +.+.++........ . .....+..|+.+++...........
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~--G~i~~~g~~~~~~~-~---~~~~~~~~tv~enl~~~~~~~~~~~ 116 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DS--GTVTVRGRVSSLLG-L---GGGFNPELTGRENIYLNGRLLGLSR 116 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEEchhhc-c---cccCCCCCcHHHHHHHHHHHcCCCH
Confidence 3456788999999999999999999998864 23 44444332111000 0 0012234566666522111000111
Q ss_pred ----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 119 ----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 119 ----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
...+.++..+++.. ........+++++ ++++.+|++|+||||+ ++|+.++..+.++|..+.+
T Consensus 117 ~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~ 190 (224)
T cd03220 117 KEIDEKIDEIIEFSELGD------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK 190 (224)
T ss_pred HHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 12333444434322 1122234455554 6888999999999999 8999999999999999987
Q ss_pred CCc-EEEEecCC
Q 012882 187 TGT-VLVATSNR 197 (454)
Q Consensus 187 ~G~-vlV~ThN~ 197 (454)
+|. ||++||+.
T Consensus 191 ~~~tiii~sH~~ 202 (224)
T cd03220 191 QGKTVILVSHDP 202 (224)
T ss_pred CCCEEEEEeCCH
Confidence 766 88999984
No 183
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.6e-15 Score=160.55 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=100.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l 107 (454)
...++-++|+|+||||||||+++|+|.++++.. +.+.+++. .......++++.|. ....+|+.+++
T Consensus 285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 285 LRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE--GEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC--cEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 456677999999999999999999999863123 34444321 11223346666665 23456777777
Q ss_pred hcccc-CC---C-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 108 SGWIT-NL---P-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 108 ~~~~~-~~---~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
..... .. . .+. ..+++++..+++.. .........+++++ +||+.+|+||+||||+ ++|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-----ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-----CCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 32211 01 0 111 23455566655521 11223345566665 6888999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 171 VFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+..+..+.++|..+.++|. ||++||+.
T Consensus 438 ~~~~~~l~~~l~~l~~~g~tvi~~sHd~ 465 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQGVAIIVISSEL 465 (506)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 9999999999999988887 99999984
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.4e-15 Score=160.56 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=99.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l 107 (454)
..+++-++|+||||||||||+++|+|..++ ..+ .+.+.+. .......+.+++|. .....|+.+++
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l 352 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAG--QVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNI 352 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCc--eEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHh
Confidence 356677999999999999999999999874 233 4443321 11222345566554 34446777776
Q ss_pred hccccCC----C--CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882 108 SGWITNL----P--FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV 169 (454)
Q Consensus 108 ~~~~~~~----~--~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l 169 (454)
....... . ... ..+++++..+++.. +........+++++ ++|+.+|+||+||||+ ++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L 427 (501)
T PRK11288 353 NISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-----PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427 (501)
T ss_pred ccccchhhcccccccChHHHHHHHHHHHHhcCccc-----CCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence 3211100 0 011 23445555555521 11222344555554 6888999999999999 89
Q ss_pred CHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 170 DVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 170 D~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
|+..+..+.++|.++.++|. ||++|||.
T Consensus 428 D~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 99999999999999988877 99999985
No 185
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.58 E-value=4e-15 Score=158.41 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhhhc----------ccchhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQVA----------EKSLRS 105 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~~~----------~~t~~e 105 (454)
..+++-++|+||||||||||+++|+|.+++ ..|...+...... ....+.++++.|.... .+++.+
T Consensus 26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 104 (490)
T PRK10938 26 LNAGDSWAFVGANGSGKSALARALAGELPL-LSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE 104 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence 356788999999999999999999999874 2343332221110 1222335555443110 123333
Q ss_pred hhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 106 SISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 106 ~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
++... ......++.++..+++... .......+++++ +||+.+|++|+||||+ +||+..+..+
T Consensus 105 ~~~~~----~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 105 IIQDE----VKDPARCEQLAQQFGITAL------LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hcccc----hhHHHHHHHHHHHcCCHhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 32110 0112344555666555321 122334555554 6888999999999999 8999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
.++|.++.++|. ||++||+..
T Consensus 175 ~~~l~~~~~~g~tvii~tH~~~ 196 (490)
T PRK10938 175 AELLASLHQSGITLVLVLNRFD 196 (490)
T ss_pred HHHHHHHHhcCCeEEEEeCCHH
Confidence 999999987776 899999854
No 186
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.58 E-value=2.9e-15 Score=146.38 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=91.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech-----hH----HH----HHHHHHHHhhhh----hcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE-----AM----LK----INEHMHRLWKNQ----VAEKS 102 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~-----f~----~~----~~~~i~~~~~~~----~~~~t 102 (454)
..+++-++|.|+||||||||+++|+|.+++ ..|...+.... .. .. ....++++.+.. ....+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 107 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAP-DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVS 107 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCcccc
Confidence 356788999999999999999999999874 23433332221 11 01 112244554432 11234
Q ss_pred hhhhhhcccc--CC-CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882 103 LRSSISGWIT--NL-PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV 169 (454)
Q Consensus 103 ~~e~l~~~~~--~~-~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l 169 (454)
+.+++..... .. ... ...+.+++..+++.. .........+++++ +||+.+|+||+||||+ ++
T Consensus 108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~L 182 (258)
T PRK11701 108 AGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-----ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182 (258)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-----hHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 4444321110 00 000 122334444444421 01112233444443 6888999999999999 89
Q ss_pred CHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 170 DVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 170 D~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
|+.....+.+++..+.+. |. +|++||+.
T Consensus 183 D~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 999999999999998764 66 89999985
No 187
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.58 E-value=2.7e-15 Score=160.11 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=99.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l 107 (454)
...+.-++|+||||||||||+++|+|.++++.. +.+.+++. .....+.++++.|+ ..+.+|+.+++
T Consensus 283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFE--GNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC--eEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 345677999999999999999999999863223 44444321 11223445666665 23446777776
Q ss_pred hcc-ccCC----CCC-h---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 108 SGW-ITNL----PFD-S---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 108 ~~~-~~~~----~~~-~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
... .... ... . ..+++++..+++.. .........+++++ ++|+.+|+||+||||+ +||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-----ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-----CCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 321 1101 111 1 23455666665521 01122334555554 6888999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 171 VFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+..+..+.+++..+.++|. ||++||+.
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 9999999999999988877 99999984
No 188
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2e-15 Score=161.44 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=100.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--hH----HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--AM----LK-INEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f~----~~-~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+++-++|+||||||||||+++|+|..++ ..| .+.+.+ .. .. .+..++++.|. ....+|+.+++...
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKG--TITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG 104 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcCC-Ccc--EEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhc
Confidence 346777999999999999999999999864 233 444332 10 11 12235566555 34556787777322
Q ss_pred cc------CCC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 111 IT------NLP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 111 ~~------~~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
.. ... .+. ..+++++..+++.. ........+++++ ++|+.+|+||+||||+ +||+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~ 178 (510)
T PRK09700 105 RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178 (510)
T ss_pred cccccccccccccCHHHHHHHHHHHHHHcCCCC------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 11 110 011 23444555555521 1233445566665 6889999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 172 FAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
..+..+.++|.++.++|. ||++||+..
T Consensus 179 ~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 179 KEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999988777 999999854
No 189
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.8e-15 Score=145.59 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=93.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..++.. ...+.+.+.+.. ....+.++++.+. ... .|+.+++
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNV 113 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHH
Confidence 35677899999999999999999999875310 123444443211 1223345555554 222 5666666
Q ss_pred hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
........... ..+++++..+++.... ...+......+++++ +||+.+|+||+||||+ ++|+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 191 (258)
T PRK14268 114 AYGPRIHGANKKDLDGVVENALRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191 (258)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCcch--hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 22111001111 1233444444331100 001112233445444 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++|.++.+ |. +|++||+.
T Consensus 192 ~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 192 RIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred HHHHHHHHHhh-CCEEEEEECCH
Confidence 99999999965 55 89999984
No 190
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.6e-15 Score=146.21 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=95.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|.++ +.....+.+.+.+.. ....+.+.++.+. .....|+.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHH
Confidence 45678899999999999999999999874 210123445543311 1223445555554 34446777766
Q ss_pred hcccc--CCC-CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWIT--NLP-FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~--~~~-~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
..... ... .. ....++++..+++.... .+........+++++ ++|+.+|++|+||||+ ++|+.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~ 184 (252)
T PRK14256 107 IAGYKLNGRVNRSEADEIVESSLKRVALWDEV--KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 184 (252)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 32111 111 11 12334444444432100 001111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..+||++||+.
T Consensus 185 ~~l~~~l~~~~~~~tiiivsH~~ 207 (252)
T PRK14256 185 LKIEELIEELKEKYTIIIVTHNM 207 (252)
T ss_pred HHHHHHHHHHHhCCcEEEEECCH
Confidence 99999999997654599999984
No 191
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.5e-15 Score=144.48 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+||||||||||+++|+|.+++.. ...+.+.+++. .......+.++.|. .....|+.+++
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl 106 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV 106 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHH
Confidence 35678899999999999999999999986420 11344444321 11223445555554 33446777776
Q ss_pred hccc--cCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 108 SGWI--TNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 108 ~~~~--~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
.... ....... ..++.++..+++.... ..........+++++ +||+.+|++|+||||+ ++|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 184 (253)
T PRK14267 107 AIGVKLNGLVKSKKELDERVEWALKKAALWDEV--KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVG 184 (253)
T ss_pred HHHHHhcCccCCHHHHHHHHHHHHHHcCCccch--hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 3211 1111111 2233444444331100 001122234455444 6888999999999999 899999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCC
Q 012882 174 IVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
+..+.++|.++.+..++|++||+.
T Consensus 185 ~~~l~~~l~~~~~~~tiii~sH~~ 208 (253)
T PRK14267 185 TAKIEELLFELKKEYTIVLVTHSP 208 (253)
T ss_pred HHHHHHHHHHHhhCCEEEEEECCH
Confidence 999999999996543499999984
No 192
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=3.6e-15 Score=145.76 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=94.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..++.. ...+.|.+.+.- ......++++.+. .....|+.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 106 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV 106 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHH
Confidence 34677899999999999999999999875310 123455553311 1223345555554 23446777776
Q ss_pred hcccc--CC-CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWIT--NL-PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~--~~-~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
..... .. ... .+.+++++..+++... ...........+++++ +||+.+|++|+||||+ ++|+.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (258)
T PRK14241 107 VAGLKLNGVRNKKDLDELVEKSLRGANLWNE--VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST 184 (258)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchh--hhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 32111 11 111 1233444444443110 0011112233444443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 185 ~~l~~~l~~~~~~~tviivsH~~ 207 (258)
T PRK14241 185 LAIEDLINELKQDYTIVIVTHNM 207 (258)
T ss_pred HHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999996533489999984
No 193
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=2.1e-14 Score=134.30 Aligned_cols=127 Identities=18% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--HHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--LKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
.+++-++|+||||||||||+++|+|..+.. ...+.+.+.+.. ......+.++.+. . ......
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~i~~~~q~--------------~-~~~~~~ 94 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGRPLDKNFQRSTGYVEQQ--------------D-VHSPNL 94 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCEehHHHhhhceEEeccc--------------C-ccccCC
Confidence 467889999999999999999999975310 123455554321 1111222222221 1 111122
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT- 189 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~- 189 (454)
+..+++...... +.+++++ +|++.+|++|++|||+ ++|+..+..+.+++.++.+.|.
T Consensus 95 tv~~~l~~~~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 160 (192)
T cd03232 95 TVREALRFSALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQA 160 (192)
T ss_pred cHHHHHHHHHHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCE
Confidence 444444321110 0223222 5667999999999999 8999999999999999987776
Q ss_pred EEEEecCC
Q 012882 190 VLVATSNR 197 (454)
Q Consensus 190 vlV~ThN~ 197 (454)
+|++||+.
T Consensus 161 iiivtH~~ 168 (192)
T cd03232 161 ILCTIHQP 168 (192)
T ss_pred EEEEEcCC
Confidence 88888884
No 194
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=4.6e-15 Score=143.07 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH--HHHHHHHHHhhh--hhcccchhhhhhccccCC--
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--KINEHMHRLWKN--QVAEKSLRSSISGWITNL-- 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~--~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~-- 114 (454)
.+++-++|+|+||||||||+++|+|..++ ..|...+....... ...+.+.++.+. .....++.+++.......
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 101 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV 101 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence 46788999999999999999999998874 23433333221110 112344555444 233456666652111111
Q ss_pred CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 115 PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 115 ~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
... ...+.+++..+++... +......+++++ +|++.+|++|+||||+ ++|+.++..+.+++..+
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 102 DKKEIERKVLEIAEMLGIDHL------LNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175 (235)
T ss_pred CHHHHHHHHHHHHHHcCChhH------HhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 111 1223344544544321 122223444443 6888999999999999 89999999999999998
Q ss_pred HhC-Cc-EEEEecCC
Q 012882 185 LST-GT-VLVATSNR 197 (454)
Q Consensus 185 ~~~-G~-vlV~ThN~ 197 (454)
..+ |. +|++||+.
T Consensus 176 ~~~~~~tili~tH~~ 190 (235)
T cd03299 176 RKEFGVTVLHVTHDF 190 (235)
T ss_pred HHhcCCEEEEEecCH
Confidence 764 76 88889874
No 195
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.8e-15 Score=158.25 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=100.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..++.-++|+|+||||||||+++|+|..++ ..| .+.+++. ....+..++++.|. ....+|+.+++...
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G--~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (501)
T PRK11288 27 CRAGQVHALMGENGAGKSTLLKILSGNYQP-DAG--SILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLG 103 (501)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCC--EEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhc
Confidence 345677999999999999999999999864 234 4444321 11123345555554 34456787777322
Q ss_pred cc--CCC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 111 IT--NLP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 111 ~~--~~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.. ... .+. ..++.++..+++.. ........+++++ ++|+.+|+||+||||+ +||+..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 177 (501)
T PRK11288 104 QLPHKGGIVNRRLLNYEAREQLEHLGVDI------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE 177 (501)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCC------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHH
Confidence 11 001 111 23444555555521 1122344566665 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCCCc
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNRAP 199 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~~P 199 (454)
.+.++|.++.++|. ||++||+...
T Consensus 178 ~l~~~l~~~~~~g~tiiiitHd~~~ 202 (501)
T PRK11288 178 QLFRVIRELRAEGRVILYVSHRMEE 202 (501)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999987776 9999998643
No 196
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.57 E-value=6.3e-15 Score=141.01 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=90.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
..++.-++|+||||||||||+++|+|.+++. . +.+.+++.. ......+.++.+.. ....|+.+++.....
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~ 113 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQPQ-G--GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ 113 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-C--cEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccC
Confidence 3567889999999999999999999998742 3 345544321 12233445554441 112366666532211
Q ss_pred CCCCCh--HH-----HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 113 NLPFDS--KV-----MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 113 ~~~~~~--~~-----~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
...... .. .+.++..+.. +....+......+++++ ++|+.+|++|+||||+ ++|+..+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~l~~----gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 189 (226)
T cd03248 114 SCSFECVKEAAQKAHAHSFISELAS----GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189 (226)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccc----cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 111000 00 0111121100 01111122233344443 6889999999999999 8999999999
Q ss_pred HHHHHHHHhCCcEEEEecCC
Q 012882 178 SGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+++.++.+..++|++||+.
T Consensus 190 ~~~l~~~~~~~tii~~sh~~ 209 (226)
T cd03248 190 QQALYDWPERRTVLVIAHRL 209 (226)
T ss_pred HHHHHHHcCCCEEEEEECCH
Confidence 99999987643489999985
No 197
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.57 E-value=4.4e-15 Score=158.49 Aligned_cols=152 Identities=15% Similarity=0.096 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
..++-++|+||||||||||+++|+|.+++. ...+.+.+++.. ......++++.|. ....+|+.+++....
T Consensus 25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 103 (500)
T TIGR02633 25 RPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGN 103 (500)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhc
Confidence 456779999999999999999999988641 123444443210 1112345566655 345567777763221
Q ss_pred cCC----CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 112 TNL----PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 112 ~~~----~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
... .... ..+++++..+++... ........+++++ +||+.+|+||+||||+ ++|+..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~ 178 (500)
T TIGR02633 104 EITLPGGRMAYNAMYLRAKNLLRELQLDAD-----NVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178 (500)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCC-----cccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Confidence 100 0111 234455555554211 0112244566665 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
.+.++|.++.++|. ||++||+..
T Consensus 179 ~l~~~l~~l~~~g~tviiitHd~~ 202 (500)
T TIGR02633 179 ILLDIIRDLKAHGVACVYISHKLN 202 (500)
T ss_pred HHHHHHHHHHhCCCEEEEEeCcHH
Confidence 99999999988887 999999854
No 198
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.57 E-value=6e-15 Score=145.53 Aligned_cols=152 Identities=15% Similarity=0.053 Sum_probs=96.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-----cCceEEEechhH------HHHHHHHHHHhhhh--hcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-----KHRQRFHFHEAM------LKINEHMHRLWKNQ--VAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-----~~k~rv~f~~f~------~~~~~~i~~~~~~~--~~~~t~~e~ 106 (454)
..+++-++|+|+||||||||+++|+|.+++.. ...+.+.+++.. ......+.++.|.. ....|+.++
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 103 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREI 103 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHH
Confidence 35678899999999999999999999986420 003455554321 12233445555542 234678787
Q ss_pred hhccccCC-----CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhc---------cCCcEEE
Q 012882 107 ISGWITNL-----PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQ---------RGASILC 162 (454)
Q Consensus 107 l~~~~~~~-----~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~---------~~p~lL~ 162 (454)
+....... ... ...++.++..+++.... ......+++++ ++|+ .+|++|+
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lll 177 (272)
T PRK13547 104 VLLGRYPHARRAGALTHRDGEIAWQALALAGATALV------GRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177 (272)
T ss_pred HhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh------cCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEE
Confidence 73221110 011 12344555555553211 11123344443 5777 4999999
Q ss_pred eeCCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 163 FDEIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 163 LDEp~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
||||+ ++|+..+..+.++|.++.+. |. +|++||+.
T Consensus 178 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 178 LDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 99999 89999999999999999765 66 88888874
No 199
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.6e-14 Score=151.35 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=116.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-+.|+|++|||||||+++|.|.+++ ..|..++...+.. ...++.+.++.|+ .....|+++|+.....
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-- 420 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-- 420 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--
Confidence 356777999999999999999999999985 3555555443321 2456777777776 3344577888732211
Q ss_pred CCChHHHHHHHHHHhhhhHHhh----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQM----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..+.+...+.++..++.+..+. +..+.+-...+++++ |||.++++|++||||| ++|+.+..++.+.+.
T Consensus 421 ~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~ 500 (559)
T COG4988 421 DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500 (559)
T ss_pred cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence 1334555556665555443221 112222222355554 7999999999999999 899999999999999
Q ss_pred HHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 183 RLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 183 ~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
++.+..+|+++||.. ..+++.-+|+.++.+
T Consensus 501 ~l~~~ktvl~itHrl-------------------~~~~~~D~I~vld~G 530 (559)
T COG4988 501 ELAKQKTVLVITHRL-------------------EDAADADRIVVLDNG 530 (559)
T ss_pred HHHhCCeEEEEEcCh-------------------HHHhcCCEEEEecCC
Confidence 999887799999963 345555666667655
No 200
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.57 E-value=2.4e-15 Score=178.87 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=109.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~ 112 (454)
...++-++|+|+||||||||+++|+|.++| ..|...+..+.. +...++.+++++|. ....+|+.+++.. ...
T Consensus 953 I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-tsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk 1031 (2272)
T TIGR01257 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK 1031 (2272)
T ss_pred EcCCcEEEEECCCCChHHHHHHHHhcCCCC-CceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc
Confidence 345677999999999999999999999875 244444433221 22344556666665 4566788888722 222
Q ss_pred CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
+..... ..+++++..+++.. .....+..+++++ +||+.+|+||+||||+ ++|+..+..++++|.
T Consensus 1032 g~~~~~~~~~v~~lL~~vgL~~------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257 1032 GRSWEEAQLEMEAMLEDTGLHH------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 222111 33455666666532 2233455666665 6899999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCCCccchhcCC
Q 012882 183 RLLSTGT-VLVATSNRAPWDLNQDG 206 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~P~dLy~~~ 206 (454)
++. +|+ ||++||+....+.++++
T Consensus 1106 ~l~-~g~TIIltTHdmdea~~laDr 1129 (2272)
T TIGR01257 1106 KYR-SGRTIIMSTHHMDEADLLGDR 1129 (2272)
T ss_pred HHh-CCCEEEEEECCHHHHHHhCCE
Confidence 995 466 99999987655555544
No 201
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.57 E-value=8.2e-15 Score=135.32 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=78.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-H----HHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-K----INEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~----~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
..+++-++|.|+||||||||+++|+|..++ .. +.+.+++... . ....+.++ ++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~i~~~--------------~q~~~-- 85 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQ--GEITLDGVPVSDLEKALSSLISVL--------------NQRPY-- 85 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CC--CEEEECCEEHHHHHHHHHhhEEEE--------------ccCCe--
Confidence 356788999999999999999999999874 23 3454443211 1 11111222 22111
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV 192 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV 192 (454)
.+..++.+++...+.. .......+| +|++.+|++|+||||+ ++|+..+..+.+++.++.+ |. +|+
T Consensus 86 ~~~~tv~~~i~~~LS~-----G~~qrv~la-------ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~ 152 (178)
T cd03247 86 LFDTTLRNNLGRRFSG-----GERQRLALA-------RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIW 152 (178)
T ss_pred eecccHHHhhcccCCH-----HHHHHHHHH-------HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 1122344443111110 000112223 4566999999999999 8999999999999999864 55 889
Q ss_pred EecCC
Q 012882 193 ATSNR 197 (454)
Q Consensus 193 ~ThN~ 197 (454)
+||+.
T Consensus 153 ~sh~~ 157 (178)
T cd03247 153 ITHHL 157 (178)
T ss_pred EecCH
Confidence 99985
No 202
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.9e-15 Score=144.00 Aligned_cols=155 Identities=18% Similarity=0.217 Sum_probs=96.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
..+++-++|+|+||||||||+++|+|..++. ....+.+.+.+. .......++++.|. .....|+.+++..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~ 105 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVAL 105 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHH
Confidence 3567889999999999999999999988531 012345555432 11233455666655 2445677777632
Q ss_pred cc--cCCCCC-h---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 110 WI--TNLPFD-S---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 110 ~~--~~~~~~-~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.. ...... . ..+++++..+++.... ...+......+++++ +||+.+|+||+||||+ ++|+.++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~ 183 (250)
T PRK14247 106 GLKLNRLVKSKKELQERVRWALEKAQLWDEV--KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183 (250)
T ss_pred HHHhccccCCHHHHHHHHHHHHHHcCCCcch--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 11 111111 1 2333444444442100 001112233445444 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++|.++.+ |. +|++||+.
T Consensus 184 ~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14247 184 KIESLFLELKK-DMTIVLVTHFP 205 (250)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCH
Confidence 99999999865 56 88888874
No 203
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=3.7e-15 Score=150.94 Aligned_cols=155 Identities=13% Similarity=0.131 Sum_probs=97.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechhH------HHHH----HHHHHHhhhh----hcccchh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEAM------LKIN----EHMHRLWKNQ----VAEKSLR 104 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f~------~~~~----~~i~~~~~~~----~~~~t~~ 104 (454)
...++-++|+|+||||||||+++|+|..++. ....+.+.|++.- .... +.+.++.|.. .+..++.
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~ 109 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVG 109 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHH
Confidence 4567889999999999999999999988521 0123555554321 1111 1344555542 2334555
Q ss_pred hhhhcccc-----CC-CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 105 SSISGWIT-----NL-PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 105 e~l~~~~~-----~~-~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
+++..... .. ... ...+.+++..+++.... +.+......+++++ +||+.+|+||++|||+
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~---~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 186 (330)
T PRK15093 110 RQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK---DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPT 186 (330)
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH---HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 55422110 00 001 12344555555553210 11122334566665 7999999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+||+..+..+.++|.++.++ |. +|++|||.
T Consensus 187 s~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 187 NAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 89999999999999999874 77 99999985
No 204
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.57 E-value=5.3e-15 Score=158.63 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=94.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEec---------------------h---------h-----
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFH---------------------E---------A----- 82 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~---------------------~---------f----- 82 (454)
...+.-++|+||||||||||+++|+|.. ++ ..|...+..+ + .
T Consensus 23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 101 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-TSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD 101 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-CceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence 3467789999999999999999999986 33 3343333200 0 0
Q ss_pred --HHHHHHHHHHHhhh---hhcccchhhhhhcccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh--
Q 012882 83 --MLKINEHMHRLWKN---QVAEKSLRSSISGWIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-- 151 (454)
Q Consensus 83 --~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-- 151 (454)
....++.++++.|. ....+++.+++..... ..... ...+++++..+++... .......+++++
T Consensus 102 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~q 175 (520)
T TIGR03269 102 KLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR------ITHIARDLSGGEKQ 175 (520)
T ss_pred HHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh------hhcCcccCCHHHHH
Confidence 00112233444442 2233466666522111 11111 1234445555554221 122234455554
Q ss_pred -----hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCCCcc
Q 012882 152 -----HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNRAPW 200 (454)
Q Consensus 152 -----rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~P~ 200 (454)
+||+.+|+||+||||+ +||+..+..+.++|.++.+ .|. ||++||+....
T Consensus 176 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 6889999999999999 8999999999999999965 476 99999996543
No 205
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.57 E-value=4.3e-15 Score=158.65 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=99.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhhh-----hcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKNQ-----VAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~~-----~~~~t~~e~l 107 (454)
..++.-++|+||||||||||+++|+|.+++. .| .+.+++ . ....+..++++.|.. ....|+.+++
T Consensus 275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~-~G--~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 351 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGALPRT-SG--YVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM 351 (501)
T ss_pred EcCCcEEEEecCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHh
Confidence 3456779999999999999999999998642 33 444332 1 112233466776652 3456777776
Q ss_pred hcccc----CC-C-CC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882 108 SGWIT----NL-P-FD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV 169 (454)
Q Consensus 108 ~~~~~----~~-~-~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l 169 (454)
..... .. . .. ...+++++..+++.. .........+++++ +||+.+|+||+||||+ +|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 352 SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-----PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred hhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-----CCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 32110 00 0 11 123445555555521 11233345566665 6888999999999999 89
Q ss_pred CHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 170 DVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 170 D~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
|+..+..+.++|..+.++|. ||++||+.
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~ 455 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEM 455 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 99999999999999987787 99999984
No 206
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.2e-15 Score=144.72 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=93.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCC--cccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG--IVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~--~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+|+||||||||+++|+|.+++ .....+.+.+.+.- ......++++.+. ... .++.+++
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 113 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP-QSIFDNV 113 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc-cCHHHHH
Confidence 346778999999999999999999998752 11123455443221 1233445566554 222 3666666
Q ss_pred hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ....... ..++.++..+++.... ...+......+++++ ++|+.+|+||+||||+ ++|+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 191 (259)
T PRK14274 114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV--KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191 (259)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 2211 1111111 1223334443331100 001111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 192 ~~l~~~l~~~~~~~tiiivtH~~ 214 (259)
T PRK14274 192 RKIEELILKLKEKYTIVIVTHNM 214 (259)
T ss_pred HHHHHHHHHHhcCCEEEEEEcCH
Confidence 99999999997633499999984
No 207
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=6e-15 Score=144.39 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=94.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEech--h------HHHHHHHHHHHhhhh-hcccchhhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHE--A------MLKINEHMHRLWKNQ-VAEKSLRSSI 107 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~--f------~~~~~~~i~~~~~~~-~~~~t~~e~l 107 (454)
...++.-++|+|+||||||||+++|+|..+ +.....+.+.+++ . .....+.+.++.+.. ....|+.+++
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 114 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI 114 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHH
Confidence 345678899999999999999999999874 1101234444432 1 112334455665541 1125666666
Q ss_pred hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
....... ..+. ..+++++..+++.... ...+......+++++ +||+.+|+||+||||+ ++|+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 192 (260)
T PRK10744 115 AFGVRLFEKLSRAEMDERVEWALTKAALWNEV--KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIST 192 (260)
T ss_pred hhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHH
Confidence 2211100 1111 2334444444431100 001111222344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 193 ~~l~~~L~~~~~~~tiii~sH~~ 215 (260)
T PRK10744 193 GRIEELITELKQDYTVVIVTHNM 215 (260)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCH
Confidence 99999999996533489999984
No 208
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.57 E-value=6.3e-15 Score=143.50 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=89.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----------HH----HHHHHHHHhhhhh----cc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----------LK----INEHMHRLWKNQV----AE 100 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----------~~----~~~~i~~~~~~~~----~~ 100 (454)
..++.-++|+|+||||||||+++|+|..++ ..| .+.+.+.. .. ..+.+.++.+... ..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 102 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHG--TATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMR 102 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcc
Confidence 346788999999999999999999999874 244 44433210 00 0112344444311 11
Q ss_pred cchhhhhhccc--cC-CCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882 101 KSLRSSISGWI--TN-LPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ- 167 (454)
Q Consensus 101 ~t~~e~l~~~~--~~-~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~- 167 (454)
.++.+++.... .. ... ....++.++..+++.. .........+++++ +||+.+|++|+||||+
T Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~ 177 (253)
T TIGR02323 103 VSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-----TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177 (253)
T ss_pred ccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-----hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 23333331110 00 000 0123334444444421 11122334455554 6889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 168 TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 168 ~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++|+.++..+.++|.++.++ |. +|++||+.
T Consensus 178 ~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 89999999999999998754 66 88899874
No 209
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=9.8e-15 Score=133.99 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH------HHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML------KINEHMHRLWKNQVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~------~~~~~i~~~~~~~~~~~t~~e~l~~~~~~ 113 (454)
..++.-++|.||||+|||||+++++|..++ .. +.+.+++... .....+. ++++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~--------------~~~~~~~- 86 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TS--GEILIDGVDLRDLDLESLRKNIA--------------YVPQDPF- 86 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CC--CEEEECCEEhhhcCHHHHHhhEE--------------EEcCCch-
Confidence 356788999999999999999999999874 23 3455543211 1111111 1222211
Q ss_pred CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EE
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VL 191 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vl 191 (454)
.++.++.+++ +.+ .......++ ++++.+|++|+||||+ ++|+..+..+.+++.++.+ +. +|
T Consensus 87 -~~~~t~~e~l-----LS~---G~~~rl~la-------~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii 149 (171)
T cd03228 87 -LFSGTIRENI-----LSG---GQRQRIAIA-------RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVI 149 (171)
T ss_pred -hccchHHHHh-----hCH---HHHHHHHHH-------HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 1223444444 110 001112233 3556899999999999 8999999999999999864 55 88
Q ss_pred EEecCC
Q 012882 192 VATSNR 197 (454)
Q Consensus 192 V~ThN~ 197 (454)
++||+.
T Consensus 150 ~~sh~~ 155 (171)
T cd03228 150 VIAHRL 155 (171)
T ss_pred EEecCH
Confidence 888874
No 210
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.56 E-value=1.9e-14 Score=134.85 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhHH---HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAML---KINEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~~---~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
..+++-++|+||||||||||+++|+|.. ++ . .+.+.+.+... .....+.++.+. . ..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~--~G~i~~~g~~~~~~~~~~~i~~~~q~--------------~-~~ 93 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-V--SGEVLINGRPLDKRSFRKIIGYVPQD--------------D-IL 93 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-C--ceEEEECCEeCchHhhhheEEEccCc--------------c-cC
Confidence 4567889999999999999999999998 63 2 34555543211 112222222221 1 11
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV 192 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV 192 (454)
....+..+++.....+....+.......+| +||+.+|++|+||||+ ++|+.++..+.++|.++.++|. +|+
T Consensus 94 ~~~~t~~~~i~~~~~~~~LS~G~~qrv~la-------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 166 (194)
T cd03213 94 HPTLTVRETLMFAAKLRGLSGGERKRVSIA-------LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166 (194)
T ss_pred CCCCcHHHHHHHHHHhccCCHHHHHHHHHH-------HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 112244444432211100000000111222 5667999999999999 8999999999999999987777 888
Q ss_pred EecCC
Q 012882 193 ATSNR 197 (454)
Q Consensus 193 ~ThN~ 197 (454)
+||+.
T Consensus 167 ~sh~~ 171 (194)
T cd03213 167 SIHQP 171 (194)
T ss_pred EecCc
Confidence 88874
No 211
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.3e-15 Score=149.58 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=94.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh----hhcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN----QVAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~----~~~~~t~~e~ 106 (454)
...++-++|+|+||||||||+++|+|.+++ .. +.+.+.+.- ......++++.|. +.+.+++.++
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~--G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~ 114 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETP-TG--GELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQI 114 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CC--cEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHH
Confidence 456788999999999999999999999874 23 344443311 1122334455443 2233444444
Q ss_pred hhccc---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 107 ISGWI---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 107 l~~~~---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
+.... ...... ...+.+++..+++... .+......+++++ +||+.+|+||++|||+ +||+..
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~ 189 (327)
T PRK11308 115 LEEPLLINTSLSAAERREKALAMMAKVGLRPE-----HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189 (327)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHCCCChH-----HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHH
Confidence 42111 011111 1234455555554210 1122233455554 6899999999999999 899999
Q ss_pred HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 174 IVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+..+.++|.++.++ |. +|++|||.
T Consensus 190 ~~~i~~lL~~l~~~~g~til~iTHdl 215 (327)
T PRK11308 190 QAQVLNLMMDLQQELGLSYVFISHDL 215 (327)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999999874 76 99999984
No 212
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=8.5e-15 Score=134.23 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=110.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhhh--
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSIS-- 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l~-- 108 (454)
.++.==.|+||||+||||+||+|.|..+|. .+++.|+... .-.+..|+.-.|. .++.+|+.+|+-
T Consensus 29 ~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA 105 (249)
T COG4674 29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELA 105 (249)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHH
Confidence 455557899999999999999999999753 4677776521 1112223332233 456778888761
Q ss_pred c--------cccCCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 109 G--------WITNLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 109 ~--------~~~~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
. .+.... ....+++++++..++... ....|..++-++ .-++++|++|++|||. ++-
T Consensus 106 ~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~------~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMT 179 (249)
T COG4674 106 LNRDKSVFASLFARLRAEERRRIDELLATIGLGDE------RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179 (249)
T ss_pred hcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh------hhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCc
Confidence 1 111111 112467777777776432 233444444333 4667999999999999 766
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCC
Q 012882 171 VFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 230 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~ 230 (454)
-+..+...++|..+...-.|+|+-|++ .|+..|..+.+|++-++
T Consensus 180 d~Et~~taeLl~~la~~hsilVVEHDM----------------~Fvr~~A~~VTVlh~G~ 223 (249)
T COG4674 180 DAETEKTAELLKSLAGKHSILVVEHDM----------------GFVREIADKVTVLHEGS 223 (249)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEeccH----------------HHHHHhhheeEEEeccc
Confidence 677788999999998776699999996 57777888888886654
No 213
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.4e-14 Score=129.68 Aligned_cols=153 Identities=15% Similarity=0.070 Sum_probs=103.5
Q ss_pred CCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe---chhHHHHHHHHHHHhhh--hhcccchhhhh-hccc
Q 012882 38 TAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF---HEAMLKINEHMHRLWKN--QVAEKSLRSSI-SGWI 111 (454)
Q Consensus 38 ~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f---~~f~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~ 111 (454)
....++.-++|.||||+|||||+++++|.+.|. .+..++.. +.+....++.++++... +...+|+.||+ |...
T Consensus 23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~ 101 (209)
T COG4133 23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQR 101 (209)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 345678999999999999999999999999752 33333321 22344466777887544 67788999998 3222
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHh--------hcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQ--------MKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~--------~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..-.-+.....+.+..+++.+..+ -......+|+.+ +..+++.+||||+ .+|......|..++.
T Consensus 102 ~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~-------ls~~pLWiLDEP~taLDk~g~a~l~~l~~ 174 (209)
T COG4133 102 FHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW-------LSPAPLWILDEPFTALDKEGVALLTALMA 174 (209)
T ss_pred HhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH-------cCCCCceeecCcccccCHHHHHHHHHHHH
Confidence 122233444555556666543211 111223344444 4789999999999 899999999999998
Q ss_pred HHHhCCc-EEEEecCCC
Q 012882 183 RLLSTGT-VLVATSNRA 198 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~ 198 (454)
.-..+|. ||.+||...
T Consensus 175 ~H~~~GGiVllttHq~l 191 (209)
T COG4133 175 AHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHhcCCCEEEEecCCcc
Confidence 8887776 777777643
No 214
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=141.31 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=93.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh-------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA-------MLKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f-------~~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
...++.-++|+|+||+|||||+++|+|..++.. ...+.+.+.+. ....+..+.++.++. ....|+.+++.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~ 104 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVA 104 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHH
Confidence 345678899999999999999999999876310 11244444321 123344566666552 11256767663
Q ss_pred cccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ...... ..+.+.+...++.... ...+......+++++ ++|+.+|+||+||||+ ++|+.++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 182 (249)
T PRK14253 105 YGLRAQGIKDKKVLDEVVERSLRGAALWDEV--KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182 (249)
T ss_pred hHHHhcCCCchHHHHHHHHHHHHHcCCchhh--hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence 2111 111111 1222333333321100 001111122344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+..++|++||+.
T Consensus 183 ~l~~~l~~~~~~~tii~~sh~~ 204 (249)
T PRK14253 183 KIEELMEELKKNYTIVIVTHSM 204 (249)
T ss_pred HHHHHHHHHhcCCeEEEEecCH
Confidence 9999999997644499999984
No 215
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=141.60 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=94.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..++.-++|+|+||+|||||+++|+|..++.. ...+.+.+++.. ......+.++.+.. ....|+.+++.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~ 106 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVA 106 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHH
Confidence 34678899999999999999999999875310 123444443211 12344566666551 11256777663
Q ss_pred ccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
... ...... ...++.++..+++... ...........+++++ ++++.+|+||+||||+ ++|+.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14270 107 YGPRIHGIKDKKELDKIVEWALKKAALWDE--VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL 184 (251)
T ss_pred hHHHhcCCCcHHHHHHHHHHHHHHcCCchh--hhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 211 111111 1223344444433110 0000111223344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+...+|++||+.
T Consensus 185 ~l~~~L~~~~~~~tiiivsH~~ 206 (251)
T PRK14270 185 KIEDLMVELKKEYTIVIVTHNM 206 (251)
T ss_pred HHHHHHHHHHhCCeEEEEEcCH
Confidence 9999999997654499999984
No 216
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.56 E-value=4.2e-15 Score=159.01 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=97.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l 107 (454)
...+.-++|+||||||||||+++|+|.+++. .| .+.+++. .......+.+++|. .....++.+++
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l 362 (510)
T PRK15439 286 VRAGEILGLAGVVGAGRTELAETLYGLRPAR-GG--RIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV 362 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-Cc--EEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence 3456779999999999999999999998642 33 4443321 01112345666654 23345666665
Q ss_pred hcc-c--cCCC-CCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 108 SGW-I--TNLP-FDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 108 ~~~-~--~~~~-~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
... . .... ... ..+++++..+++.. ......+..+++++ ++|+.+|+||+||||+ +||+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 363 CALTHNRRGFWIKPARENAVLERYRRALNIKF-----NHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HhhhhhhhccccChHHHHHHHHHHHHHcCCCC-----CCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 211 0 0110 011 23445555555520 11223345566665 6888999999999999 89999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+..+.++|.++.++|. ||++|||.
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 99999999999988777 99999984
No 217
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=8e-15 Score=142.76 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=92.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+|+||||||||+++|+|..+ +.....+.+.+.+.- ......++++.|. ... .|+.+++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 107 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENV 107 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHH
Confidence 35677899999999999999999999753 100123455543311 1233455666554 222 3666666
Q ss_pred hccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ...... ...++.++..+++.... ...+......+++++ +||+.+|+||+||||+ ++|+.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~ 185 (253)
T PRK14242 108 AYGLRVNGVKDKAYLAERVERSLRHAALWDEV--KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185 (253)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 2211 111111 12333444444432100 000111123344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|.++.+ |. ||++||+.
T Consensus 186 ~~l~~~l~~~~~-~~tvii~tH~~ 208 (253)
T PRK14242 186 QKIEELIHELKA-RYTIIIVTHNM 208 (253)
T ss_pred HHHHHHHHHHhc-CCeEEEEEecH
Confidence 999999999955 55 89999984
No 218
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.3e-14 Score=136.70 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=101.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
.+.+.-+.|+|++|+|||||++++.|..++ ..+.++++.. ....+..++++.|. +.+.+++.+|+.
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl 103 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVL 103 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHH
Confidence 456777999999999999999999998864 3457777652 23345556666555 456677777763
Q ss_pred ccccCC---------CCCh-HHHH--HHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882 109 GWITNL---------PFDS-KVME--WVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T 168 (454)
Q Consensus 109 ~~~~~~---------~~~~-~~~e--~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~ 168 (454)
....+. .++. ++.. ..++.+++ .+....-|..|++++ |||+++|+|++-|||. .
T Consensus 104 ~grl~~~s~~~slfglfsk~dk~~Al~aLervgi------~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvas 177 (258)
T COG3638 104 LGRLGYTSTWRSLFGLFSKEDKAQALDALERVGI------LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177 (258)
T ss_pred hhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCc------HHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccc
Confidence 221111 1222 1111 22333333 233345577777776 7999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 169 VDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 169 lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
||+.++..+.++|+.+.++ |. ||+.-|+.
T Consensus 178 LDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v 208 (258)
T COG3638 178 LDPESAKKVMDILKDINQEDGITVIVNLHQV 208 (258)
T ss_pred cChhhHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 9999999999999999865 66 66666653
No 219
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.56 E-value=4.9e-15 Score=144.49 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=92.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-cCceEEEechhHH---HH-HHHHHHHhhhh----hcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAML---KI-NEHMHRLWKNQ----VAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-~~k~rv~f~~f~~---~~-~~~i~~~~~~~----~~~~t~~e~l~~~ 110 (454)
..++.-++|+|+||||||||+++|+|..++.. ...+.+.+.+... .. ...+.++.++. .+..++.+++...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~ 105 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARET 105 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHH
Confidence 35678899999999999999999999986410 0223444432110 11 12344554442 1122333333111
Q ss_pred --ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 111 --ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 111 --~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..........+..++..+++.... ..+......+++++ +||+.+|+||+||||+ ++|+.++..+.++
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (254)
T PRK10418 106 CLALGKPADDATLTAALEAVGLENAA---RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182 (254)
T ss_pred HHHcCCChHHHHHHHHHHHcCCCChh---hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 111111223444555555542210 01122233445444 7889999999999999 8999999999999
Q ss_pred HHHHHhC-Cc-EEEEecCC
Q 012882 181 VSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~~-G~-vlV~ThN~ 197 (454)
|.++.+. |. ||++||+.
T Consensus 183 L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 183 LESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHHHHhcCcEEEEEecCH
Confidence 9999764 66 88888874
No 220
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.56 E-value=4.5e-15 Score=146.06 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=92.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhhh----hcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKNQ----VAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~~----~~~~t~~e~ 106 (454)
..+++-++|.|+||||||||+++|+|..++ ..| .+.+.+.. ......++++.+.. ....++.++
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG--~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~ 111 (268)
T PRK10419 35 LKSGETVALLGRSGCGKSTLARLLVGLESP-SQG--NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI 111 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHH
Confidence 456788999999999999999999998864 344 44443321 11233455554442 123445554
Q ss_pred hhcccc---CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 107 ISGWIT---NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 107 l~~~~~---~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
+..... ..... ...+++++..+++... ........+++++ +||+.+|+||+||||+ ++|+.+
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~ 186 (268)
T PRK10419 112 IREPLRHLLSLDKAERLARASEMLRAVDLDDS-----VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL 186 (268)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHcCCChh-----HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 411111 11111 1234455555554210 0111122333333 6888999999999999 899999
Q ss_pred HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 174 IVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+..+.++|.++.++ |. +|++||+.
T Consensus 187 ~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 187 QAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 99999999999764 66 89999984
No 221
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6.7e-15 Score=145.28 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=91.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~ 106 (454)
...++.-++|+|+||||||||+++|+|..++.. ...+.+.+.+.- ...+..+.++.|. ... .++.++
T Consensus 42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~n 120 (274)
T PRK14265 42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYEN 120 (274)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHH
Confidence 345678899999999999999999999874210 123455543311 1223445555554 222 356666
Q ss_pred hhccccCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 107 ISGWITNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 107 l~~~~~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
+.......... ....++.+..+++.... .+........+++++ +||+.+|+|||||||+ +||+..+.
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~ 198 (274)
T PRK14265 121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEV--KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR 198 (274)
T ss_pred HHhHHHhcCchHHHHHHHHHHHHHcccchhh--HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 52211100011 11222233332221000 001111122344443 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+...||++|||.
T Consensus 199 ~l~~~L~~~~~~~tiii~sH~~ 220 (274)
T PRK14265 199 QVEELCLELKEQYTIIMVTHNM 220 (274)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999997543499999985
No 222
>PLN03211 ABC transporter G-25; Provisional
Probab=99.56 E-value=5.3e-15 Score=162.29 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=102.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--HHHHHHHHHHHhhh--hhcccchhhhh-hccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--MLKINEHMHRLWKN--QVAEKSLRSSI-SGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~~ 114 (454)
..+++-++|+||||||||||+++|+|..++. ...+.+.+++. .....+.++++.|+ ..+.+|+.|++ +......
T Consensus 91 i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~ 169 (659)
T PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRL 169 (659)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCC
Confidence 3567789999999999999999999987642 11344544432 22334456777766 45567899987 3221111
Q ss_pred C--CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 115 P--FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 115 ~--~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
+ .+. ..+++++..+++....+. ..-....+.+++++ ++|+.+|+||+||||+ +||..++..+.++
T Consensus 170 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t-~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~ 248 (659)
T PLN03211 170 PKSLTKQEKILVAESVISELGLTKCENT-IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248 (659)
T ss_pred CCCCCHHHHHHHHHHHHHHcCChhhcCc-eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence 1 111 334566666666432110 00011123455554 6888999999999999 9999999999999
Q ss_pred HHHHHhCCc-EEEEecCC
Q 012882 181 VSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~~G~-vlV~ThN~ 197 (454)
|+.+.++|+ ||++||+.
T Consensus 249 L~~l~~~g~TvI~~sH~~ 266 (659)
T PLN03211 249 LGSLAQKGKTIVTSMHQP 266 (659)
T ss_pred HHHHHhCCCEEEEEecCC
Confidence 999988787 77777764
No 223
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7e-15 Score=142.99 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=93.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCccc--CceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~--~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||+|||||+++|+|.+++... ..+.+++.+.. ......++++.+. .....|+.+++
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 106 (252)
T PRK14272 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence 456788999999999999999999998754210 13455543311 1223445565554 33445677766
Q ss_pred hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ....... +.++.++..+++... ...........+++++ ++|+.+|+||+||||+ ++|+..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 184 (252)
T PRK14272 107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDE--VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184 (252)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCcchh--hhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 3211 1111111 112222222221100 0001111233444443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 185 ~~l~~~l~~~~~~~tiii~sH~~ 207 (252)
T PRK14272 185 ARIEDLMTDLKKVTTIIIVTHNM 207 (252)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCH
Confidence 99999999986533388999984
No 224
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=141.37 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcc--c
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGW--I 111 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~--~ 111 (454)
.++.-++|+|+||+|||||+++|+|..++.....+.+.+++. ....+..++++.+.. ....|+.+++... .
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~ 105 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKL 105 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhh
Confidence 467889999999999999999999987421112344444321 112344566666551 1124777776221 1
Q ss_pred cCCC--CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 112 TNLP--FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 112 ~~~~--~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.... .. ....+.++..+++.... ..........+++++ +||+.+|+||+||||+ ++|+.++..+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~ 183 (246)
T PRK14269 106 HGMIKNKDEEEALVVDCLQKVGLFEEV--KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE 183 (246)
T ss_pred cCcccChHHHHHHHHHHHHHcCCChhh--hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1110 01 12334555555552100 000111123344443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|.++.+ |. +|++||+.
T Consensus 184 ~l~~~~~-~~tiii~tH~~ 201 (246)
T PRK14269 184 LLKELSH-NLSMIMVTHNM 201 (246)
T ss_pred HHHHHhC-CCEEEEEecCH
Confidence 9999865 65 89999984
No 225
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.55 E-value=5.2e-15 Score=149.86 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=95.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHH----HHHHHHhhhh----hcccchhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKIN----EHMHRLWKNQ----VAEKSLRS 105 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~----~~i~~~~~~~----~~~~t~~e 105 (454)
...++-++|+|+||||||||+++|+|.+++.....+.+.+++.- .... +.+.++.|.. .+.+++.+
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~ 118 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGE 118 (330)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHH
Confidence 45678899999999999999999999987421113455554321 1111 1344454442 23345555
Q ss_pred hhhccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 106 SISGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 106 ~l~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
++....... .... ..+.+++...++.... ..+......+++++ +||+.+|+||++|||+ +||+.
T Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~---~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~ 195 (330)
T PRK09473 119 QLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEAR---KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVT 195 (330)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChH---HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 442111100 1111 2333444444442110 11122334556665 6899999999999999 89999
Q ss_pred HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+..+.++|..+.++ |. +|++||+.
T Consensus 196 ~~~~i~~lL~~l~~~~g~til~iTHdl 222 (330)
T PRK09473 196 VQAQIMTLLNELKREFNTAIIMITHDL 222 (330)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 999999999999775 77 99999985
No 226
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.2e-15 Score=142.08 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=91.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCC--cccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG--IVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~--~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..++ .....+.+.+.+.. ...+..++++.+. ... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni 104 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHH
Confidence 346788999999999999999999997642 10123455554311 1233445555554 122 5666665
Q ss_pred hccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ...... ....++++..+++... ...........+++++ ++|+.+|++|+||||+ ++|+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14240 105 AYGPRTHGIKDKKKLDEIVEKSLKGAALWDE--VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182 (250)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCchh--hHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 3211 111101 1122233333322100 0000111122344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|.++.+ |. +|++||+.
T Consensus 183 ~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14240 183 LKIEELIQELKK-DYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHHhc-CCeEEEEEeCH
Confidence 999999999964 55 89999984
No 227
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=157.56 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=105.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+|+||||||||+++|+|..+|. .| .+.+++. ....++.+.+++|+ ..-+.|+.+|+.....
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~-~G--~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 442 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDID-EG--EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART 442 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCC-Cc--eEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC
Confidence 3567779999999999999999999998752 34 4444332 23567788888887 3345688888843321
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. ..+.+..++.+...++.... +.+..+..-...+++++ |||+++|+||+||||+ .+|+.+...+.+
T Consensus 443 ~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~ 521 (582)
T PRK11176 443 E-QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_pred C-CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 1 23445555555555543311 01111111123455554 7999999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCC
Q 012882 180 IVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~ 197 (454)
.+..+.+..++|++||+.
T Consensus 522 ~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 522 ALDELQKNRTSLVIAHRL 539 (582)
T ss_pred HHHHHhCCCEEEEEecch
Confidence 999886655599999973
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.55 E-value=8e-15 Score=157.24 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=99.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---H--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---M--------LKINEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~--------~~~~~~i~~~~~~--~~~~~t~~e~ 106 (454)
...++-++|+||||||||||+++|+|.+++ ..|...+.++.. . ......++++.|. ....+++.++
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence 356677999999999999999999999874 234333321210 0 1123346666665 3445677777
Q ss_pred hhcccc-CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 107 ISGWIT-NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 107 l~~~~~-~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
+..... ..... ...++.++..+++.... ..+........+++++ +||+.+|+||+||||+ +||+..+.
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~ 464 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEEK-AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKV 464 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc-chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 632111 11111 12334455555552100 0011233455666665 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.++|..+.++ |. ||++||+.
T Consensus 465 ~l~~~l~~l~~~~g~tvi~vsHd~ 488 (520)
T TIGR03269 465 DVTHSILKAREEMEQTFIIVSHDM 488 (520)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCH
Confidence 999999999764 66 99999984
No 229
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=8.6e-15 Score=143.51 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..+++-++|+|+||||||||+++|+|.+++. ....+.+.+.+.- ....+.+.++.+.. ....|+.+++.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 110 (261)
T PRK14263 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVA 110 (261)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHH
Confidence 4567889999999999999999999988631 0123455554321 12233455555541 11356666662
Q ss_pred ccccCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 109 GWITNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 109 ~~~~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
......... ...++.++...++.... ..........+++++ +||+.+|+||+||||+ ++|+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l 188 (261)
T PRK14263 111 FGLRLNRYKGDLGDRVKHALQGAALWDEV--KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188 (261)
T ss_pred HHHhhcCchHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH
Confidence 211100011 12334444444432100 000111122344443 6889999999999999 8999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.++|.++.+ |. +|++||+.
T Consensus 189 ~~~l~~~~~-~~tii~isH~~ 208 (261)
T PRK14263 189 EELMVELKK-DYTIALVTHNM 208 (261)
T ss_pred HHHHHHHhc-CCeEEEEeCCH
Confidence 999999964 55 88888874
No 230
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.55 E-value=1.3e-14 Score=138.15 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=90.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----------HHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----------KINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----------~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..++.-++|+|+|||||||||++|+|..++ .. +.+.+++... ..+..+.++.+.. ....++.+++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~ 100 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LE--GKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENIT 100 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CC--CeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHh
Confidence 346788999999999999999999999864 23 3444433210 1122344444441 11346666653
Q ss_pred ccccCCCCChHHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWITNLPFDSKVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~~~~~~~~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
... ..........+..+++...... ...+..-...+++++ ++++.+|++|+||||+ ++|+.++.
T Consensus 101 ~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 177 (218)
T cd03290 101 FGS---PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177 (218)
T ss_pred hcC---cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHH
Confidence 211 1122222333333333211100 000011122344443 6889999999999999 89999999
Q ss_pred HHHH--HHHHHHhCCc-EEEEecCC
Q 012882 176 ALSG--IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~--ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.+ ++..+.+.|. +|++||+.
T Consensus 178 ~l~~~~ll~~~~~~~~tii~~sH~~ 202 (218)
T cd03290 178 HLMQEGILKFLQDDKRTLVLVTHKL 202 (218)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCh
Confidence 9988 7777766666 88888874
No 231
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.55 E-value=5.6e-15 Score=155.72 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=91.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhc-cc-cCCCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISG-WI-TNLPFD 117 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~-~~-~~~~~~ 117 (454)
..++.-++|+||||||||||+++|+|.+++. .| .+.+++.... +.. .......+|+.+++.. .. ......
T Consensus 47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sG--eI~I~G~~~~----i~~-~~~l~~~lTV~EnL~l~~~~~~~~~~ 118 (549)
T PRK13545 47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KG--TVDIKGSAAL----IAI-SSGLNGQLTGIENIELKGLMMGLTKE 118 (549)
T ss_pred EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEeee----EEe-ccccCCCCcHHHHHHhhhhhcCCCHH
Confidence 3567789999999999999999999998742 33 4444321100 000 0112334566666522 11 111111
Q ss_pred h--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882 118 S--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 118 ~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~ 187 (454)
. ...+.++..+++... +......+++++ +||+.+|++|+||||+ +||+..+..+.++|.++.++
T Consensus 119 e~~e~i~elLe~lgL~~~------ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 119 KIKEIIPEIIEFADIGKF------IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred HHHHHHHHHHHHcCChhH------hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 1 122344444444221 122234455554 6888999999999999 89999999999999999877
Q ss_pred Cc-EEEEecCCC
Q 012882 188 GT-VLVATSNRA 198 (454)
Q Consensus 188 G~-vlV~ThN~~ 198 (454)
|. +|++||+..
T Consensus 193 G~TIIIVSHdl~ 204 (549)
T PRK13545 193 GKTIFFISHSLS 204 (549)
T ss_pred CCEEEEEECCHH
Confidence 76 899999854
No 232
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.1e-14 Score=143.86 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=95.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..++.-++|+|+||+|||||+++|+|..++. ....+.+.+... .......+.++.+. ... .++.+++.
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~ 122 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVL 122 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHH
Confidence 4567889999999999999999999988631 012345554331 11234456666665 222 57777663
Q ss_pred ccccC-CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWITN-LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~~-~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
..... ..... ....+++..+++.... ...+......+++++ ++|+.+|+||+||||+ ++|+.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~ 200 (276)
T PRK14271 123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAV--KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE 200 (276)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCCchh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 21111 00111 1223344444442100 001112233445444 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+..+||++||+.
T Consensus 201 ~l~~~L~~~~~~~tiiivsH~~ 222 (276)
T PRK14271 201 KIEEFIRSLADRLTVIIVTHNL 222 (276)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999997654599999985
No 233
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.8e-15 Score=141.88 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=92.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..++. ....+.+.+.+.. ......+.++.|. ... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l 104 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNV 104 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHH
Confidence 3567889999999999999999999987520 0123455544311 1223445555554 222 5666666
Q ss_pred hcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
..... ...... ..++..+..+++.... ..........+++++ +||+.+|++|+||||+ ++|+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14262 105 AFGPRIHGVKSKHKLDRIVEESLKKAALWDEV--KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIAT 182 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh--HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHH
Confidence 22111 111111 1223333333331100 001112233444443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 183 ~~l~~~l~~~~~~~tili~sH~~ 205 (250)
T PRK14262 183 QRIEKLLEELSENYTIVIVTHNI 205 (250)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCH
Confidence 99999999987533388999984
No 234
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.6e-15 Score=143.58 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=94.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..++.. ...+.|.+.+. .......+.++.+. ... .|+.+++
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 120 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENV 120 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHHH
Confidence 45678899999999999999999999875310 12345554331 11233445565554 222 3666666
Q ss_pred hccc--cCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 108 SGWI--TNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 108 ~~~~--~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
.... ...... ...++.++..+++.... ...+......+++++ +||+.+|++|+||||+ ++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14235 121 AYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198 (267)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 3211 111101 12234445554442100 001111223344443 6888999999999999 899999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCC
Q 012882 174 IVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
+..+.++|..+.+..++|++||+.
T Consensus 199 ~~~l~~~L~~l~~~~tiiivtH~~ 222 (267)
T PRK14235 199 TAKVEELIDELRQNYTIVIVTHSM 222 (267)
T ss_pred HHHHHHHHHHHhcCCeEEEEEcCH
Confidence 999999999996633489999984
No 235
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=8.1e-15 Score=148.21 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=96.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-cCceEEEechhH------HHHHH----HHHHHhhhh----hcccchh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAM------LKINE----HMHRLWKNQ----VAEKSLR 104 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-~~k~rv~f~~f~------~~~~~----~i~~~~~~~----~~~~t~~ 104 (454)
...++-++|+|+||||||||+++|+|.+++.. ...+.+.+.+.- ....+ .+.++.|.. .+.+++.
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 109 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVG 109 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHH
Confidence 35677899999999999999999999886310 123455554321 11111 244444431 2333444
Q ss_pred hhhhcccc---CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 105 SSISGWIT---NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 105 e~l~~~~~---~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
+++..... ..... ...+.+++..+++... ...+.....++++++ +||+.+|+||++|||+ +||+
T Consensus 110 ~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~---~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~ 186 (326)
T PRK11022 110 FQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP---ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV 186 (326)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh---HHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 33321111 11111 1234445555555211 011222344566665 7999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHh-CCc-EEEEecCCC
Q 012882 172 FAIVALSGIVSRLLS-TGT-VLVATSNRA 198 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~-~G~-vlV~ThN~~ 198 (454)
..+..+.++|.++.+ .|. +|++||+..
T Consensus 187 ~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 187 TIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999986 476 999999853
No 236
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=142.44 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=92.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~ 106 (454)
...+++-++|+|+||||||||+++|+|..++.. ...+.+++++.. ......+.++.+. ... .|+.++
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en 110 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN 110 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence 345678899999999999999999999764200 123445543311 1223345555554 122 366666
Q ss_pred hhcccc--CCCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 107 ISGWIT--NLPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 107 l~~~~~--~~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
+..... ..... ...++.++...++.... ..........+++++ +||+.+|+||+||||+ ++|+..+.
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 188 (264)
T PRK14243 111 IAYGARINGYKGDMDELVERSLRQAALWDEV--KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL 188 (264)
T ss_pred HHhhhhhcCcchHHHHHHHHHHHHhCchhhH--HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 532111 11000 12222333333321100 000111122344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+..+||++||+.
T Consensus 189 ~l~~~L~~~~~~~tvi~vtH~~ 210 (264)
T PRK14243 189 RIEELMHELKEQYTIIIVTHNM 210 (264)
T ss_pred HHHHHHHHHhcCCEEEEEecCH
Confidence 9999999997654599999984
No 237
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.55 E-value=1.5e-14 Score=157.56 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=106.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h----HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A----MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+|++|||||||+++|+|..+|. .| .+.+++ . ...+++.+.+++|+ ..-+.|+.+|+....
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G--~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~- 439 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EG--EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR- 439 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCCC-Cc--eEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-
Confidence 4567889999999999999999999998752 34 444443 2 23567888888887 233458888884432
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
..+.+..++.+...++...- +.+..+..-...+++++ |||+++|+||+||||+ .+|..+...+.+
T Consensus 440 --~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~ 517 (592)
T PRK10790 440 --DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517 (592)
T ss_pred --CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 34555666666666654321 11111112223355554 7999999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCC
Q 012882 180 IVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~ 197 (454)
.+..+.+..++|++||+.
T Consensus 518 ~l~~~~~~~tvIivtHr~ 535 (592)
T PRK10790 518 ALAAVREHTTLVVIAHRL 535 (592)
T ss_pred HHHHHhCCCEEEEEecch
Confidence 999887655599999973
No 238
>PRK13409 putative ATPase RIL; Provisional
Probab=99.55 E-value=8.6e-15 Score=158.78 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=96.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCCCh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
..+.-++|+||||||||||+++|+|.+++. . +.+.++ ..+++++|. .....|+.+++........ ..
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~--G~I~~~-------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~-~~ 431 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-E--GEVDPE-------LKISYKPQYIKPDYDGTVEDLLRSITDDLG-SS 431 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEEe-------eeEEEecccccCCCCCcHHHHHHHHhhhcC-hH
Confidence 456779999999999999999999998742 3 344433 135555554 2345677777643211111 12
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT 189 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~ 189 (454)
...++++..+++... .......|++++ ++|+.+|+||+||||+ +||+.++..+.++|+++.++ |.
T Consensus 432 ~~~~~~L~~l~l~~~------~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 505 (590)
T PRK13409 432 YYKSEIIKPLQLERL------LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA 505 (590)
T ss_pred HHHHHHHHHCCCHHH------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334556666665321 122334455554 6888999999999999 89999999999999999764 65
Q ss_pred -EEEEecCC
Q 012882 190 -VLVATSNR 197 (454)
Q Consensus 190 -vlV~ThN~ 197 (454)
+|++||+.
T Consensus 506 tviivsHD~ 514 (590)
T PRK13409 506 TALVVDHDI 514 (590)
T ss_pred EEEEEeCCH
Confidence 99999984
No 239
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=9e-15 Score=145.20 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=94.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~ 106 (454)
...++.-++|+|+||||||||+++|+|..++.. ...+.|.+++.- ...++.+.++.|. ... .++.++
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 139 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP-KSIYDN 139 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc-CCHHHH
Confidence 345677899999999999999999999875200 123445443211 1223345555554 222 266666
Q ss_pred hhccc--cCCCC-ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 107 ISGWI--TNLPF-DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 107 l~~~~--~~~~~-~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
+.... ..... ....+++++..+++.... .+.+..-...+++++ +||+.+|+||+||||+ +||+..+.
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~ 217 (285)
T PRK14254 140 VAYGLKIQGYDGDIDERVEESLRRAALWDEV--KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217 (285)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCchh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence 52211 11111 112334444444431100 001111223444443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|..+.+.+.+|++||+.
T Consensus 218 ~l~~~L~~~~~~~tiii~tH~~ 239 (285)
T PRK14254 218 KIEDLIEELAEEYTVVIVTHNM 239 (285)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999997655599999984
No 240
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.54 E-value=1.4e-14 Score=136.53 Aligned_cols=145 Identities=18% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
.++++-++|.||||||||||+++|+|..++ ..| .+.+.+ .+.++.+. .....|+.+++..... ...
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G--~i~~~g-------~i~~~~q~~~l~~~t~~enl~~~~~---~~~ 94 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEK-LSG--SVSVPG-------SIAYVSQEPWIQNGTIRENILFGKP---FDE 94 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCC--eEEEcC-------EEEEEecCchhccCcHHHHhccCCC---cCH
Confidence 456788999999999999999999998874 233 444433 24444443 1123466666633211 122
Q ss_pred HHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH-HHHHH
Q 012882 119 KVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG-IVSRL 184 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~-ll~~L 184 (454)
.........+++...... ..........+++++ ++|+.+|++|+||||+ ++|+..+..+.+ ++..+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~ 174 (204)
T cd03250 95 ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL 174 (204)
T ss_pred HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence 222222222222111000 000011112233333 6888999999999999 899999988887 56766
Q ss_pred HhCCc-EEEEecCC
Q 012882 185 LSTGT-VLVATSNR 197 (454)
Q Consensus 185 ~~~G~-vlV~ThN~ 197 (454)
.+.|. ||++||+.
T Consensus 175 ~~~~~tvi~~sh~~ 188 (204)
T cd03250 175 LLNNKTRILVTHQL 188 (204)
T ss_pred ccCCCEEEEEeCCH
Confidence 66666 88888874
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=142.70 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=95.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCc----eEEEech--h----HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR----QRFHFHE--A----MLKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k----~rv~f~~--f----~~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||+|||||+++|+|..++. .+. +.+.+.+ . .......++++.+. .....|+.+++
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~-~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl 111 (257)
T PRK14246 33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY-DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNI 111 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-cCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHH
Confidence 3467889999999999999999999988642 221 2222211 1 11234456666655 33456777776
Q ss_pred hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
....... .... ..+++++..+++.... .+........+++++ +|++.+|++||||||+ ++|+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 112 AYPLKSHGIKEKREIKKIVEECLRKVGLWKEV--YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc--hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 3221111 1111 2334444544442100 001111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+...+|++||+.
T Consensus 190 ~~l~~~l~~~~~~~tiilvsh~~ 212 (257)
T PRK14246 190 QAIEKLITELKNEIAIVIVSHNP 212 (257)
T ss_pred HHHHHHHHHHhcCcEEEEEECCH
Confidence 99999999997644499999984
No 242
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.54 E-value=2.4e-14 Score=130.01 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=104.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH--HHHHHHHHHhhh--hhcccchhhhhhcccc-CC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--KINEHMHRLWKN--QVAEKSLRSSISGWIT-NL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~--~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-~~ 114 (454)
.+.++-+.|+||+|+|||||+++++|...| ..+...++..+... -..+-+..+.|+ ++..+|+.+|+-..+. ++
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCC-CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 356788999999999999999999997754 35555555432211 112233444555 5667788888733332 23
Q ss_pred CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882 115 PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR 183 (454)
Q Consensus 115 ~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~ 183 (454)
..+ .+.++.++...++.+. ..++-..+++++ |+|+++-+||+||||+ .||+.-+..+..++..
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~------~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGF------LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQ 174 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhH------hhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHH
Confidence 222 2555666666666432 234445555554 6888999999999999 7999999999999999
Q ss_pred HHhC-Cc-EEEEecCCCccc
Q 012882 184 LLST-GT-VLVATSNRAPWD 201 (454)
Q Consensus 184 L~~~-G~-vlV~ThN~~P~d 201 (454)
+.++ +. ++++||+ |+|
T Consensus 175 l~~E~~~TllmVTH~--~~D 192 (231)
T COG3840 175 LCDERKMTLLMVTHH--PED 192 (231)
T ss_pred HHHhhCCEEEEEeCC--HHH
Confidence 9764 54 9999997 444
No 243
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=6.7e-15 Score=143.97 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCccc--CceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~--~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|.+++... ..+.+.+.+.- ......+.++.++ ... .|+.+++
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 108 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENV 108 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHH
Confidence 356788999999999999999999998763100 13445543211 1233445566555 222 5777766
Q ss_pred hcccc-CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWIT-NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~-~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
..... ....+. ...++++..+++... ...........+++++ +||+.+|++|+||||+ ++|+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 186 (259)
T PRK14260 109 AYGVRISAKLPQADLDEIVESALKGAALWQE--VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT 186 (259)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCcch--hhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 32111 000111 223344443333110 0001111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 187 ~~l~~~l~~~~~~~tiii~tH~~ 209 (259)
T PRK14260 187 MKVEELIHSLRSELTIAIVTHNM 209 (259)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999987643489999984
No 244
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.54 E-value=1.7e-14 Score=135.85 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhHH------H-HHHHHHHHhhhhhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAML------K-INEHMHRLWKNQVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~~------~-~~~~i~~~~~~~~~~~t~~e~l~~~ 110 (454)
..+++-++|+|+||||||||+++|+|.. ++ .. +++.+++... . ....+.++.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-~~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~-------------- 85 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TE--GEILFKGEDITDLPPEERARLGIFLAFQY-------------- 85 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-Cc--cEEEECCEECCcCCHHHHhhCcEEEeecC--------------
Confidence 4577889999999999999999999984 32 23 3454433110 0 01112222222
Q ss_pred ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 111 ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 111 ~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.. .+.....++.+.. ....+++++ ++++.+|++|+||||+ ++|+.++..+.++|.
T Consensus 86 ~~--~~~~~~~~~~l~~---------------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~ 148 (200)
T cd03217 86 PP--EIPGVKNADFLRY---------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148 (200)
T ss_pred hh--hccCccHHHHHhh---------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 00 0111111111110 011122222 5667999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCC
Q 012882 183 RLLSTGT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~ 197 (454)
++.++|. +|++||+.
T Consensus 149 ~~~~~~~tiii~sh~~ 164 (200)
T cd03217 149 KLREEGKSVLIITHYQ 164 (200)
T ss_pred HHHHCCCEEEEEecCH
Confidence 9987776 88888874
No 245
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.54 E-value=7.3e-15 Score=154.35 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=96.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhh----hhcccchhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKN----QVAEKSLRSS 106 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~----~~~~~t~~e~ 106 (454)
....+.-++|+|++|||||||+++|+|.++| ..+.+.|.+.- ......+..+.|. +.+.+|+.+.
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPP---SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 4456788999999999999999999999985 23444443321 1122222222222 2333444444
Q ss_pred hhccccCCC-C-Ch---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 107 ISGWITNLP-F-DS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 107 l~~~~~~~~-~-~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
+...+.... . .. .++.+++...++. .+.+.....++++++ |||+.+|++|++|||+ .||+..
T Consensus 390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~-----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 390 LAEPLRIHGGGSGAERRARVAELLELVGLP-----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred HHhHHhhhcccchHHHHHHHHHHHHHcCCC-----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 422111100 0 01 2233334444442 112344455667665 7999999999999999 799999
Q ss_pred HHHHHHHHHHHHhC-Cc-EEEEecCCC
Q 012882 174 IVALSGIVSRLLST-GT-VLVATSNRA 198 (454)
Q Consensus 174 a~~L~~ll~~L~~~-G~-vlV~ThN~~ 198 (454)
+..+.++|..|.++ |. .|++|||..
T Consensus 465 qa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 465 QAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 99999999999876 77 999999953
No 246
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=141.91 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=91.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+|+||||||||+++|+|..++.. ...+.+.+++.. ...++.+.++.+. ... .++.+++
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 105 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDNV 105 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHHH
Confidence 35678899999999999999999999886421 012444443211 1223445555554 222 3666665
Q ss_pred hcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
..... ...... ...+.++...++... .......-...+++++ +||+.+|++|+||||+ ++|+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 106 AFGPRMLGTTAQSRLDEVVEKSLRQAALWDE--VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 (251)
T ss_pred hhHHHhcCCChhhHHHHHHHHHHHHhCCchh--hhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 22111 111111 122223333332110 0001111222344443 6889999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|..+. +|. ||++||+.
T Consensus 184 ~~l~~~l~~~~-~~~tilivsh~~ 206 (251)
T PRK14249 184 MRIEELMQELK-QNYTIAIVTHNM 206 (251)
T ss_pred HHHHHHHHHHh-cCCEEEEEeCCH
Confidence 99999999985 455 99999984
No 247
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=8e-15 Score=144.12 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=90.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhhh--hcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ--VAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~--~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..+ +.....+.+.+.+.. ......+.++.|.. .. .++.+++
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl 122 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNI 122 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc-ccHHHHH
Confidence 45677899999999999999999999753 100123444443211 12233455655541 22 3666665
Q ss_pred hcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
..... ...... ...+..+..+++... ...........+++++ ++|+.+|++|+||||+ ++|+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~ 200 (268)
T PRK14248 123 THALKYAGERRKSVLDEIVEESLTKAALWDE--VKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200 (268)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc--hHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHH
Confidence 32111 110001 112223332222100 0001111223344444 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|..+.+..+||++||+.
T Consensus 201 ~~l~~~l~~~~~~~tiii~tH~~ 223 (268)
T PRK14248 201 AKIEELITELKEEYSIIIVTHNM 223 (268)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCH
Confidence 99999999996543499999984
No 248
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.4e-14 Score=140.80 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=91.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..+++-++|+|+||||||||+++|+|..+ +.....+++.+++.. ......+.++.|.. ....|+.+++.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~ 107 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVV 107 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHH
Confidence 34677899999999999999999999743 210113445443211 12234455665541 11256777663
Q ss_pred ccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
... ....... ...++++..+++... ...........+++++ +||+.+|+||+||||+ ++|+.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 185 (252)
T PRK14239 108 YGLRLKGIKDKQVLDEAVEKSLKGASIWDE--VKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAG 185 (252)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHcCCchh--HHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 211 1111111 122233333332110 0001111223344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+..++|++||+.
T Consensus 186 ~l~~~l~~~~~~~tii~~sH~~ 207 (252)
T PRK14239 186 KIEETLLGLKDDYTMLLVTRSM 207 (252)
T ss_pred HHHHHHHHHhhCCeEEEEECCH
Confidence 9999999996543499999984
No 249
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=8.9e-15 Score=160.07 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=98.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh----hhcccchhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN----QVAEKSLRSS 106 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~----~~~~~t~~e~ 106 (454)
...+.-++|+|+||||||||+++|+|.+++. . +.|.+++. .....+.++++.|. ..+.+++.++
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~-~--G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~ 423 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQ-G--GEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDS 423 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-C--cEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHH
Confidence 3456779999999999999999999998742 3 44444321 01122345666654 2344567776
Q ss_pred hhccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 107 ISGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 107 l~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
+.... ....... ..+++++..+++.. .........|++++ +||+.+|+||++|||+ +||+..
T Consensus 424 l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-----~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~ 498 (623)
T PRK10261 424 IMEPLRVHGLLPGKAAAARVAWLLERVGLLP-----EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498 (623)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-----HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 63211 1111111 23445555555521 11122334556665 6889999999999999 899999
Q ss_pred HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 174 IVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+..+.++|.++.++ |. ||++|||.
T Consensus 499 ~~~i~~ll~~l~~~~g~tvi~isHdl 524 (623)
T PRK10261 499 RGQIINLLLDLQRDFGIAYLFISHDM 524 (623)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999764 76 99999985
No 250
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=9.2e-15 Score=143.70 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+|+||||||||+++|+|..++. ....+.+.+.+.- ....+.++++.+. ... .|+.+++
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni 121 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENI 121 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHH
Confidence 3567889999999999999999999987531 0123445443311 1234455666554 222 4677766
Q ss_pred hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
....... .... ..+.+++..+++.... ...+......+++++ +|++.+|++|+||||+ ++|+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~ 199 (267)
T PRK14237 122 TFALERAGVKDKKVLDEIVETSLKQAALWDQV--KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199 (267)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3221111 0111 2223333343331100 001111122334443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|..+.+ +. +|++||+.
T Consensus 200 ~~l~~~l~~~~~-~~tiii~tH~~ 222 (267)
T PRK14237 200 MQLEETMFELKK-NYTIIIVTHNM 222 (267)
T ss_pred HHHHHHHHHHhc-CCEEEEEecCH
Confidence 999999999965 45 89999874
No 251
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.6e-14 Score=142.42 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..++. ....+.+.+++. ....+..+.++.++ ... .|+.+++
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl 126 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP-KSIYENV 126 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc-ccHHHHH
Confidence 4567889999999999999999999987521 012344544321 11234455566554 222 2677766
Q ss_pred hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ....... ...++++..+++.... ...+......+++++ +||+.+|+||+||||+ ++|+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~ 204 (272)
T PRK14236 127 VYGLRLQGINNRRVLDEAVERSLRGAALWDEV--KDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST 204 (272)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH--HHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 3211 1111111 2233344433332100 001111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 205 ~~l~~~L~~~~~~~tiiivtH~~ 227 (272)
T PRK14236 205 LKIEELITELKSKYTIVIVTHNM 227 (272)
T ss_pred HHHHHHHHHHHhCCeEEEEeCCH
Confidence 99999999997643489999984
No 252
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.4e-14 Score=138.37 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=93.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-c-cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-V-KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~-~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..++. . ...+++.+++.. ......+.++.|+ ... .|+.+++
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni 107 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENV 107 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHHH
Confidence 3467789999999999999999999976421 0 113555554321 1223335555554 222 3666666
Q ss_pred hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
....... .... ..+.+++..+++.... ...+......+++++ ++++.+|++|+||||+ ++|+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 185 (253)
T PRK14261 108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV--KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185 (253)
T ss_pred HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh--HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 3211110 1111 1223333333331100 011122233455554 6889999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|..+.+...+|++||+.
T Consensus 186 ~~l~~~l~~~~~~~tvii~sh~~ 208 (253)
T PRK14261 186 AKIEDLIEDLKKEYTVIIVTHNM 208 (253)
T ss_pred HHHHHHHHHHhhCceEEEEEcCH
Confidence 99999999997644499999974
No 253
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.8e-14 Score=140.05 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=93.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhC---CCCcccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGA---TEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~---l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|. .++ ....+.+.+++.. ....+.++++++.. ....|+.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl 104 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENV 104 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC-CCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHH
Confidence 356788999999999999999999986 332 1123445443311 12234456665541 1123666666
Q ss_pred hccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ...... ...++.++..+++.... ..........+++++ ++|+.+|++|+||||+ ++|+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 105 AYGLRVNGVKDNAFIRQRVEETLKGAALWDEV--KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182 (250)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 3211 111111 12334444444432100 001112233455554 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|.++.+ |. ||++||+.
T Consensus 183 ~~l~~~l~~~~~-~~tiiivtH~~ 205 (250)
T PRK14245 183 AKVEELIHELKK-DYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHHhc-CCeEEEEeCCH
Confidence 999999999954 55 99999984
No 254
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.7e-14 Score=138.98 Aligned_cols=154 Identities=15% Similarity=0.170 Sum_probs=93.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||||||||+++|+|..+ +.....+.+.+.+.. ......++++.|. ... .++.+++
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ni 106 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP-KSIYDNV 106 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc-CCHHHHH
Confidence 34678899999999999999999999874 110123445543311 1223445555554 222 2666665
Q ss_pred hcc--ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 108 SGW--ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 108 ~~~--~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
... ........ ..++.++..+++.... ...+......+++++ ++|+.+|+||+||||+ ++|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~ 184 (251)
T PRK14244 107 AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL--GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVA 184 (251)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh--hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 221 11111111 1223344444442100 001111233445444 6888999999999999 899999
Q ss_pred HHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 174 IVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+..+.++|.++.+ |. +|++||+.
T Consensus 185 ~~~l~~~l~~~~~-~~tiiiisH~~ 208 (251)
T PRK14244 185 TNVIENLIQELKK-NFTIIVVTHSM 208 (251)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 9999999999854 56 89999984
No 255
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.4e-14 Score=138.20 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=92.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechh--------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..++.-++|+|+||||||||+++|+|..+ +.....+.+.+.+. .......+.++.++. ....|+.+++.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~ 106 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVA 106 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHH
Confidence 34677899999999999999999999875 11012334443321 112233455555541 11246777663
Q ss_pred cccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ...... ..++.++..+++.... ...+......+++++ +||+.+|++|+||||+ ++|+.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~ 184 (251)
T PRK14251 107 YGLKIAGVKDKELIDQRVEESLKQAAIWKET--KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184 (251)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCCcch--HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHH
Confidence 2111 111111 2233344444431100 001112233444444 6889999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+..++|++||+.
T Consensus 185 ~l~~~l~~~~~~~tiiiisH~~ 206 (251)
T PRK14251 185 EIEETLMELKHQYTFIMVTHNL 206 (251)
T ss_pred HHHHHHHHHHcCCeEEEEECCH
Confidence 9999999986543499999984
No 256
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=1.6e-14 Score=136.19 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
..+++-++|+|+||||||||+++|+|..++.....+.+.+.+.. ....+.+.++.++ . ..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~--------------~-~~ 94 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEE--------------D-VH 94 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecc--------------c-cc
Confidence 35678899999999999999999999986210123444443321 0111122232222 1 11
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
....++.+++....... .......+++++ +||+.+|++|+||||+ ++|+..+..+.+++.++.+
T Consensus 95 ~~~~tv~~~l~~~~~~~--------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 166 (202)
T cd03233 95 FPTLTVRETLDFALRCK--------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166 (202)
T ss_pred CCCCcHHHHHhhhhhhc--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 11124444443222110 011122233332 5778999999999999 8999999999999999976
Q ss_pred C-Cc-EEEEecCC
Q 012882 187 T-GT-VLVATSNR 197 (454)
Q Consensus 187 ~-G~-vlV~ThN~ 197 (454)
+ +. ++|+||+.
T Consensus 167 ~~~~t~ii~~~h~ 179 (202)
T cd03233 167 VLKTTTFVSLYQA 179 (202)
T ss_pred hCCCEEEEEEcCC
Confidence 5 55 66666653
No 257
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.53 E-value=7.8e-15 Score=160.50 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=97.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------------------HHHHH-HHHHHHhhh---
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------------------MLKIN-EHMHRLWKN--- 96 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------------------~~~~~-~~i~~~~~~--- 96 (454)
...+.-++|+|+||||||||+++|+|.+++. .+ .+.+.+. +.... ..++++.|.
T Consensus 39 v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~-~G--~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~ 115 (623)
T PRK10261 39 LQRGETLAIVGESGSGKSVTALALMRLLEQA-GG--LVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMT 115 (623)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCC-Ce--EEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchh
Confidence 3567889999999999999999999998742 33 3332210 00111 134555553
Q ss_pred -hhcccchhhhhhcccc---CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEe
Q 012882 97 -QVAEKSLRSSISGWIT---NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCF 163 (454)
Q Consensus 97 -~~~~~t~~e~l~~~~~---~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~L 163 (454)
..+.+|+.+++..... ...... ..+.+++..+++... ...+......|++++ +||+.+|+||+|
T Consensus 116 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLll 192 (623)
T PRK10261 116 SLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA---QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIA 192 (623)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh---hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 2344677777632111 111111 234455555555210 011222344556655 688999999999
Q ss_pred eCCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCCCc
Q 012882 164 DEIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNRAP 199 (454)
Q Consensus 164 DEp~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~~P 199 (454)
|||+ +||+..+..+.+++.++.++ |. ||++||+...
T Consensus 193 DEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~ 231 (623)
T PRK10261 193 DEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV 231 (623)
T ss_pred eCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 9999 89999999999999999754 76 9999999643
No 258
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.53 E-value=3.5e-14 Score=129.45 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=74.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
..++.-++|.|+||||||||+++|+|..++ ..+ .+.+.+.............+. ..++++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G--~v~~~g~~~~~~~~~~~~~~~-------i~~~~q---------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKP-DSG--EILVDGKEVSFASPRDARRAG-------IAMVYQ---------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCe--EEEECCEECCcCCHHHHHhcC-------eEEEEe----------
Confidence 356788999999999999999999999874 233 444432110000000000000 001111
Q ss_pred HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.+ .......+| +|++.+|++|+||||+ ++|+..+..+.++|.++.++|. +|++||+.
T Consensus 83 ----------LS~---G~~qrl~la-------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 83 ----------LSV---GERQMVEIA-------RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred ----------cCH---HHHHHHHHH-------HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 000 000112233 3456899999999999 8999999999999999987776 88888874
No 259
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.53 E-value=8.5e-15 Score=157.36 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=97.8
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh----hhcccchhhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN----QVAEKSLRSSI 107 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~----~~~~~t~~e~l 107 (454)
....++-++|+||||||||||+++|+|.++ ..|...+...... ...+..++++.|. .....++.+++
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l 385 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence 345667799999999999999999999885 2343333221110 0123345666654 23446777776
Q ss_pred hccc--cC--CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 108 SGWI--TN--LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 108 ~~~~--~~--~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
.... .. .... ...+++++..+++... ........+++++ +||+.+|+||+||||+ ++|+..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 460 (529)
T PRK15134 386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE-----TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV 460 (529)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHcCCCHH-----HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH
Confidence 3211 11 1111 1334555665555210 1122233455554 6888999999999999 899999
Q ss_pred HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 174 IVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+..+.++|.++.++ |. ||++||+.
T Consensus 461 ~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 461 QAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 99999999999764 66 99999985
No 260
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.53 E-value=2.5e-14 Score=141.33 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~ 114 (454)
..++.-++|+|+||+|||||+++|+|.++ ..|...+..... ...+.+.+.+++++. ....|+.+++... .
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~--~- 101 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPY--G- 101 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhc--c-
Confidence 45678899999999999999999999986 234333333221 123455666666652 1123666766211 1
Q ss_pred CCChHHHHHHHHHHhhhhHHhh-cch----HHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQM-KNI----LPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~-~~~----l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
......+.+.+..+++...... ... +..-...+++++ ||++.+|+|||||||+ ++|+.+...+.++|
T Consensus 102 ~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l 181 (275)
T cd03289 102 KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL 181 (275)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 1233444555555555321110 000 000001144443 7889999999999999 89999999999999
Q ss_pred HHHHhCCc-EEEEecCC
Q 012882 182 SRLLSTGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN~ 197 (454)
..++. |+ ||++||+.
T Consensus 182 ~~~~~-~~tii~isH~~ 197 (275)
T cd03289 182 KQAFA-DCTVILSEHRI 197 (275)
T ss_pred HHhcC-CCEEEEEECCH
Confidence 98864 55 88889885
No 261
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.53 E-value=1.9e-14 Score=162.85 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=137.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhh--hc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSI--SG 109 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l--~~ 109 (454)
..+++..++|.|+||+||||+++++.|..++ ..|...+..++- +..+++.+++.+|. ....+|.+|.+ ++
T Consensus 587 ~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~a 665 (885)
T KOG0059|consen 587 AVPPGECFGLLGVNGAGKTTTFKMLTGETKP-TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYA 665 (885)
T ss_pred EecCCceEEEecCCCCCchhhHHHHhCCccC-CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHH
Confidence 3456788999999999999999999999875 344445544432 23478889999987 67788999987 66
Q ss_pred cccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 110 WITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 110 ~~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
...+.+... ..++.++..+++.... ..-++.+++++ .|++.+|+++|||||+ ++||.+++.++.
T Consensus 666 rlrG~~~~di~~~v~~ll~~~~L~~~~------~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ 739 (885)
T KOG0059|consen 666 RLRGLPRSDIGSAIEKLLRLVGLGPYA------NKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD 739 (885)
T ss_pred HHcCCChhHHHHHHHHHHHHcCChhhh------ccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence 666666543 5677788877775422 11244455554 4788999999999999 999999999999
Q ss_pred HHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhh
Q 012882 180 IVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYR 235 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR 235 (454)
++.++.++|. +|++||+....|-.++++ .|...++...+++...+.
T Consensus 740 ii~~~~k~g~aiiLTSHsMeE~EaLCtR~----------aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 740 IIARLRKNGKAIILTSHSMEEAEALCTRT----------AIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHHhhhh----------heeecCeeEEecChHHHH
Confidence 9999999985 999999998888777763 366788888888876554
No 262
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.6e-14 Score=141.55 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=92.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|.|+||||||||+++|+|..++. +...+.+.+++.- ....+.+.++.+. ..+ .|+.+++
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl 108 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNV 108 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHH
Confidence 4567889999999999999999999998742 0112344443211 1223334444443 222 5666665
Q ss_pred hcccc--CCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWIT--NLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~--~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
..... ..... ...+..++..+++.... ..........+++++ ++|+.+|++|+||||+ ++|+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~ 186 (261)
T PRK14258 109 AYGVKIVGWRPKLEIDDIVESALKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186 (261)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 22111 11011 12233444444431100 000111122344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHh-CCc-EEEEecCC
Q 012882 175 VALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
..+.++|.++.. .|. +|++||+.
T Consensus 187 ~~l~~~l~~l~~~~~~tiiivsH~~ 211 (261)
T PRK14258 187 MKVESLIQSLRLRSELTMVIVSHNL 211 (261)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCH
Confidence 999999999864 466 88888874
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.4e-14 Score=145.14 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=93.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh--------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA--------MLKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f--------~~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..+++-++|+|+|||||||||++|+|.+++. ....+.+.+.+. .......+.++.+.. ....++.+++.
T Consensus 68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~ 147 (305)
T PRK14264 68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENIS 147 (305)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHH
Confidence 3567889999999999999999999987420 012344544321 112334566666552 11246777663
Q ss_pred ccccC--------------CCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEee
Q 012882 109 GWITN--------------LPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFD 164 (454)
Q Consensus 109 ~~~~~--------------~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LD 164 (454)
..... .... ...++.++..+++.... ..........+++++ +||+.+|+||+||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD 225 (305)
T PRK14264 148 YGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMD 225 (305)
T ss_pred hHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh--hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 21100 0000 12233344433331100 001111123344443 6888999999999
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 165 EIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 165 Ep~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
||+ +||+..+..+.++|.++.+...+|++||+.
T Consensus 226 EPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~ 259 (305)
T PRK14264 226 EPASALDPIATSKIEDLIEELAEEYTVVVVTHNM 259 (305)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 999 899999999999999997754599999984
No 264
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=2.8e-14 Score=131.89 Aligned_cols=107 Identities=19% Similarity=0.123 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 120 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~ 120 (454)
+++.-++|+||||||||||+++|+|.+++. . +.+.++.. .+.++.+...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~--G~i~~~g~------~i~~~~q~~~---------------------- 71 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN-G--DNDEWDGI------TPVYKPQYID---------------------- 71 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC-C--cEEEECCE------EEEEEcccCC----------------------
Confidence 467889999999999999999999998742 3 34444321 0122211100
Q ss_pred HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC-c-EEEEecCC
Q 012882 121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG-T-VLVATSNR 197 (454)
Q Consensus 121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G-~-vlV~ThN~ 197 (454)
+.+ .......+|+ +++.+|++++||||+ ++|+..+..+.+++.++.+++ . +|++||+.
T Consensus 72 ---------LSg---Gq~qrv~lar-------al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 72 ---------LSG---GELQRVAIAA-------ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred ---------CCH---HHHHHHHHHH-------HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 000 0011123343 445899999999999 899999999999999997764 5 89999984
No 265
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.53 E-value=1.6e-14 Score=158.41 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=95.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhccccCCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWITNLPF 116 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~~~~~ 116 (454)
...+.-++|+||||||||||+++|+|.+++. . +.+.+..- -.++++.|. ..+.+|+.+++.........
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~--G~i~~~~~-----~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~ 413 (635)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-S--GRIHCGTK-----LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMV 413 (635)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-C--cEEEECCC-----cEEEEEeCcccccCCCCCHHHHHHhhcccccc
Confidence 3456679999999999999999999998642 3 34444321 134555543 34456777776332111111
Q ss_pred C--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 117 D--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 117 ~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
. ...+..++..+++... ........|++++ ++|+.+|+||+||||+ +||+.+...|.+++..+
T Consensus 414 ~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-- 486 (635)
T PRK11147 414 NGRPRHVLGYLQDFLFHPK-----RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-- 486 (635)
T ss_pred cchHHHHHHHHHhcCCCHH-----HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--
Confidence 1 2344555555555211 1122345566665 6888999999999999 89999999999999876
Q ss_pred CCcEEEEecCC
Q 012882 187 TGTVLVATSNR 197 (454)
Q Consensus 187 ~G~vlV~ThN~ 197 (454)
.|+||++|||+
T Consensus 487 ~~tvi~vSHd~ 497 (635)
T PRK11147 487 QGTVLLVSHDR 497 (635)
T ss_pred CCeEEEEECCH
Confidence 46799999986
No 266
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.9e-14 Score=139.96 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=89.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-++|+|+||||||||+++|+|..+ +.....+.+.+++.. ......+.++.|+ ... .|+.+++
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl 106 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENV 106 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHH
Confidence 35677899999999999999999999763 110113445443321 1122334455544 122 4666655
Q ss_pred hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.... ....... ....+.+...++... ...........+++++ ++|+.+|+||+||||+ ++|+.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14255 107 IYGLRLAGVKDKAVLDEAVETSLKQAAIWDE--VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184 (252)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcCCccc--hhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 2211 1111111 111222222222100 0001111223344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 012882 175 VALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+.++|.++.+..++|++||+.
T Consensus 185 ~~l~~~l~~~~~~~tii~vsH~~ 207 (252)
T PRK14255 185 TQIENMLLELRDQYTIILVTHSM 207 (252)
T ss_pred HHHHHHHHHHHhCCEEEEEECCH
Confidence 99999999997654599999984
No 267
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.52 E-value=2.8e-14 Score=155.95 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=105.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSI-SGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~ 113 (454)
.++++-++|+||||||||||+++|+|..++.....+.+.+++.. ...++.++++.|+ ..+.+|+.|++ ++....
T Consensus 48 i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~ 127 (617)
T TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR 127 (617)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcC
Confidence 35667799999999999999999999876421224556555432 2455667888777 46678999988 332222
Q ss_pred CCC--C--h--HHHHHHHHHHhhhhHHhhcchHHH--HHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 114 LPF--D--S--KVMEWVAAEEKYKQEVQMKNILPA--VADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 114 ~~~--~--~--~~~e~ll~~~~l~~~~~~~~~l~~--va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.+. . . ..+++++..+++....+ ..+.. ..+.+++++ ++|+.+|++|+||||+ +||..++..+
T Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~--t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l 205 (617)
T TIGR00955 128 MPRRVTKKEKRERVDEVLQALGLRKCAN--TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV 205 (617)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCchhcCc--CccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHH
Confidence 221 1 1 34566677666643211 11100 012355554 6888999999999999 9999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++.+.++|+ +|++||+.
T Consensus 206 ~~~L~~l~~~g~tvi~~~hq~ 226 (617)
T TIGR00955 206 VQVLKGLAQKGKTIICTIHQP 226 (617)
T ss_pred HHHHHHHHhCCCEEEEEeCCC
Confidence 999999988788 66666663
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.4e-14 Score=140.56 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=92.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH----------HHHHHHHHHHhhh--hhcccchh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLR 104 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~ 104 (454)
...+++-++|+|+||||||||+++|+|..++.. ...+.+.++..- ......++++.++ ... .++.
T Consensus 38 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 116 (265)
T PRK14252 38 MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP-KSIF 116 (265)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCc-chHH
Confidence 345678899999999999999999999875310 023455553210 1223345555554 222 2666
Q ss_pred hhhhccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 105 SSISGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 105 e~l~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
+++.... ...... .+..+..+...++.. ...+........+++++ ++|+.+|++|+||||+ ++|+
T Consensus 117 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~ 194 (265)
T PRK14252 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWD--EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP 194 (265)
T ss_pred HHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch--hhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 6652211 111110 122233333333210 00011111223344443 6888999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 172 FAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..+..+.++|.++.....+|++||+.
T Consensus 195 ~~~~~l~~~l~~l~~~~tiiivth~~ 220 (265)
T PRK14252 195 IATASIEELISDLKNKVTILIVTHNM 220 (265)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCH
Confidence 99999999999997643499999984
No 269
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.5e-14 Score=140.93 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=90.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEech--h------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHE--A------MLKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~--f------~~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..++.-++|+|+||||||||+++|+|.++ +.....+.+.+++ . .......++++.|.. ....|+.+++.
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~ 126 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVT 126 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHH
Confidence 45678899999999999999999999875 1001223444432 1 112334455655541 11136666652
Q ss_pred ccccC-CCCChHH----HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWITN-LPFDSKV----MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~~-~~~~~~~----~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
..... ...+... +.+.+..+++.. +....+......+++++ ++|+.+|+|||||||+ ++|+.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~ 204 (271)
T PRK14238 127 YGPKIHGIKDKKTLDEIVEKSLRGAAIWD--ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204 (271)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHcCCcc--hHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 21110 0011111 122222221100 00011111223344443 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|.++.+..++|++||+.
T Consensus 205 ~l~~~l~~~~~~~tiiivsH~~ 226 (271)
T PRK14238 205 KVEELVQELKKDYSIIIVTHNM 226 (271)
T ss_pred HHHHHHHHHHcCCEEEEEEcCH
Confidence 9999999997633389999974
No 270
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.52 E-value=4.7e-14 Score=125.78 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=94.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
+.+..+.|+||+|+|||||++.+.=.--+ ..+.-.+..+.| ...+++.++.+.|+ +.+.+|+.+++.
T Consensus 26 ~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli 104 (242)
T COG4161 26 PEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI 104 (242)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence 35667999999999999999998532211 223333322222 23455556665554 456667777663
Q ss_pred cccc---CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWIT---NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~~---~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
..+. +++.++ ..+.+++..+++.+.. .+..-.+++++ |||+.+|++|+||||+ .+|+.-..
T Consensus 105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~a------dr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeita 178 (242)
T COG4161 105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYA------DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178 (242)
T ss_pred hhhHHHhCCCHHHHHHHHHHHHHHhcccccc------ccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHH
Confidence 3222 222222 3334444444442211 01111123332 6888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+..++++|...|. -+|+||..
T Consensus 179 qvv~iikel~~tgitqvivthev 201 (242)
T COG4161 179 QIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHHHHhcCceEEEEEeeh
Confidence 99999999999999 88999975
No 271
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.52 E-value=4e-14 Score=153.98 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=106.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|++|||||||+++|.|.. | ..|...+...+. ...+++.+.+++|+ ..-+.|+.+|+.... .
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~--~ 448 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN--P 448 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC--C
Confidence 3567779999999999999999999998 4 345444433221 23567788888887 334568889884432 1
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+..++.+...++...- +.+..+.+-...+++++ |||+++|+||+||||| .+|..+...+.+.+
T Consensus 449 ~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l 528 (588)
T PRK11174 449 DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 24455555555555554311 11122222233466665 7999999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecC
Q 012882 182 SRLLSTGTVLVATSN 196 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN 196 (454)
.++.+..++|++||+
T Consensus 529 ~~~~~~~TvIiItHr 543 (588)
T PRK11174 529 NAASRRQTTLMVTHQ 543 (588)
T ss_pred HHHhCCCEEEEEecC
Confidence 888654459999997
No 272
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.3e-14 Score=142.37 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=93.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS 106 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~ 106 (454)
...++.-++|+|+||||||||+++|+|..+ +.....+.|.+++.. ...+..++++.++ ... .++.++
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en 139 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDN 139 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHH
Confidence 345678899999999999999999999753 100123455554321 1233455566554 222 367776
Q ss_pred hhcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 107 ISGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 107 l~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
+..... ...... ....+++..+++... ..+........+++++ +||+.+|++|+||||+ +||+..
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~ 217 (286)
T PRK14275 140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDE--VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217 (286)
T ss_pred HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc--hhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 632111 111111 122233333332100 0011112233445444 6889999999999999 899999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCC
Q 012882 174 IVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
+..+.++|..+.....||++||+.
T Consensus 218 ~~~l~~~L~~~~~~~tvIivsH~~ 241 (286)
T PRK14275 218 TAKIEDLIQELRGSYTIMIVTHNM 241 (286)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCH
Confidence 999999999986543489999974
No 273
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.52 E-value=3.6e-14 Score=152.43 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=104.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEec---hhHHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH---EAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~---~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
..++++-++|+||+|||||||+++|.|..++. .|...+... +...++++.+++++|+ ..-..|+.+|+.... .
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~--~ 433 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPL-QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGR--P 433 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccC--C
Confidence 34567889999999999999999999998752 444443322 1223456677888887 334568888884321 1
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+++...+.+...++.+.- +.+..+.+-...+++++ ||++++|+||+||||| .+|..+...+.+.+
T Consensus 434 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l 513 (529)
T TIGR02868 434 DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL 513 (529)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 12445555555555553311 11112222223456555 7999999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecC
Q 012882 182 SRLLSTGTVLVATSN 196 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN 196 (454)
..+.+..++|++||+
T Consensus 514 ~~~~~~~TvIiItHr 528 (529)
T TIGR02868 514 LAALSGKTVVVITHH 528 (529)
T ss_pred HHhcCCCEEEEEecC
Confidence 887554459999986
No 274
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.52 E-value=4.4e-14 Score=153.01 Aligned_cols=156 Identities=18% Similarity=0.147 Sum_probs=106.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|+||+|||||+++|.|..++. .|...+...+. ..+.++.+.+++|+ ...+.|+.+|+..... .
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~ 432 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-E 432 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-C
Confidence 4567889999999999999999999998742 44444433222 13456778888887 3445688888743321 1
Q ss_pred CCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+...+.+...++..... .+..+..-...+++++ ||++++|+||+||||+ .+|..+...+.+.|
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L 512 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 234555666666666543211 1111222223455554 7999999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecCC
Q 012882 182 SRLLSTGTVLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN~ 197 (454)
..+.+..++|++||+.
T Consensus 513 ~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 513 ERLMQGRTTLVIAHRL 528 (571)
T ss_pred HHHhCCCEEEEEehhh
Confidence 9886554599999984
No 275
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=8.2e-15 Score=160.66 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=89.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh----hcccchhhhhhccccCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ----VAEKSLRSSISGWITNLP 115 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~----~~~~t~~e~l~~~~~~~~ 115 (454)
..++.-++|+||||||||||+++|+|.+++ ..| .|.+..- ..++++.|.. ....++.+++... ...
T Consensus 335 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G--~i~~~~~-----~~igy~~Q~~~~~l~~~~~~~~~~~~~--~~~ 404 (638)
T PRK10636 335 LVPGSRIGLLGRNGAGKSTLIKLLAGELAP-VSG--EIGLAKG-----IKLGYFAQHQLEFLRADESPLQHLARL--APQ 404 (638)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--eEEECCC-----EEEEEecCcchhhCCccchHHHHHHHh--Cch
Confidence 345677999999999999999999999864 233 3333210 0223333321 1112222222110 001
Q ss_pred CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882 116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~ 187 (454)
.....++.++..+++... ........|++++ ++++.+|+||+||||| +||+.+...|.++|..+ .
T Consensus 405 ~~~~~~~~~L~~~~l~~~-----~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~ 477 (638)
T PRK10636 405 ELEQKLRDYLGGFGFQGD-----KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E 477 (638)
T ss_pred hhHHHHHHHHHHcCCChh-----HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C
Confidence 112345566666655321 1122344556554 6888999999999999 89999999999999987 4
Q ss_pred CcEEEEecCCC
Q 012882 188 GTVLVATSNRA 198 (454)
Q Consensus 188 G~vlV~ThN~~ 198 (454)
|+||++||++.
T Consensus 478 gtvi~vSHd~~ 488 (638)
T PRK10636 478 GALVVVSHDRH 488 (638)
T ss_pred CeEEEEeCCHH
Confidence 67999999863
No 276
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.52 E-value=3.7e-14 Score=154.29 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=115.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSI-SGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~ 113 (454)
..+++-++|+||+||||||||++|+|..++...-.+.+..++. ....++..+++.|+ ..+.+||.|++ ++....
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lr 132 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLR 132 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhc
Confidence 3567889999999999999999999988742223455555552 23455666778777 57889999998 443333
Q ss_pred CCCC------hHHHHHHHHHHhhhhHHh--hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 114 LPFD------SKVMEWVAAEEKYKQEVQ--MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 114 ~~~~------~~~~e~ll~~~~l~~~~~--~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.+.. ..++++++..+++..-.+ .... .. +.+++++ ..|+.+|.||++|||| +||..+|..+
T Consensus 133 lp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~--~~-rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~v 209 (613)
T KOG0061|consen 133 LPSSLSKEEKRERVEEVISELGLEKCADTLIGNP--GI-RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQV 209 (613)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCChhhccceecCC--CC-CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHH
Confidence 3331 267788888888753211 0000 00 2233333 3567999999999999 9999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCccchhc
Q 012882 178 SGIVSRLLSTGTVLVATSNRAPWDLNQ 204 (454)
Q Consensus 178 ~~ll~~L~~~G~vlV~ThN~~P~dLy~ 204 (454)
.++|+++++.|++||+|-+.|..+++.
T Consensus 210 v~~Lk~lA~~grtVi~tIHQPss~lf~ 236 (613)
T KOG0061|consen 210 VQLLKRLARSGRTVICTIHQPSSELFE 236 (613)
T ss_pred HHHHHHHHhCCCEEEEEEeCCcHHHHH
Confidence 999999999999888888888877774
No 277
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.52 E-value=5.9e-14 Score=133.53 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=85.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
.+.++-++|+||||||||||+++|+|..++ ..|... .++..... +.. .....+.+|+.+++.........+..
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~-~~~~~~~~----~~~-~~~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFI-GLRGDALP----LGA-NSFILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEE-EecCceec----ccc-ccccCCcCcHHHHHHHHHHHcCCCHH
Confidence 346788999999999999999999999864 234332 12221110 111 01134556777776221111111221
Q ss_pred -HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcE
Q 012882 120 -VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTV 190 (454)
Q Consensus 120 -~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~v 190 (454)
..+.+....++.. ........+++++ +|++.+|++|+||||+ ++|...+..+.+++.+..+...+
T Consensus 83 ~~~~~~~~~~~l~~------~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~i 156 (213)
T PRK15177 83 EFSHFCYQLTQLEQ------CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGL 156 (213)
T ss_pred HHHHHHHHHhChhH------HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcE
Confidence 2222222222211 1122333444443 6888999999999998 89999999999877554433348
Q ss_pred EEEecCC
Q 012882 191 LVATSNR 197 (454)
Q Consensus 191 lV~ThN~ 197 (454)
|++||+.
T Consensus 157 i~vsH~~ 163 (213)
T PRK15177 157 IVLTHNP 163 (213)
T ss_pred EEEECCH
Confidence 8999985
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.8e-14 Score=154.85 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=94.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh----hcccchhhhhhccccCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ----VAEKSLRSSISGWITNLP 115 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~----~~~~t~~e~l~~~~~~~~ 115 (454)
...+.-++|+||||||||||+++|+|..++. .+.+.++. ...++++.|.. ....++.+++.... ...
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-----~~~i~~~~q~~~~~~~~~~t~~~~~~~~~-~~~ 412 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSE-----NANIGYYAQDHAYDFENDLTLFDWMSQWR-QEG 412 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECC-----ceEEEEEcccccccCCCCCcHHHHHHHhc-cCC
Confidence 3466779999999999999999999988642 34555443 12355555542 23356666653211 111
Q ss_pred CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882 116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~ 187 (454)
.....++.++..+++... ........+++++ ++++.+|+||+||||+ +||+..+..+.++|..+ .
T Consensus 413 ~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~ 485 (530)
T PRK15064 413 DDEQAVRGTLGRLLFSQD-----DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--E 485 (530)
T ss_pred ccHHHHHHHHHHcCCChh-----HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 223445666666655210 1122334455554 6888999999999999 89999999999999887 4
Q ss_pred CcEEEEecCC
Q 012882 188 GTVLVATSNR 197 (454)
Q Consensus 188 G~vlV~ThN~ 197 (454)
++||++|||.
T Consensus 486 ~tvi~vsHd~ 495 (530)
T PRK15064 486 GTLIFVSHDR 495 (530)
T ss_pred CEEEEEeCCH
Confidence 5699999985
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.51 E-value=2.4e-14 Score=153.93 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=97.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH------HH---HH-HHHHHHhhhh----hcccch
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM------LK---IN-EHMHRLWKNQ----VAEKSL 103 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~------~~---~~-~~i~~~~~~~----~~~~t~ 103 (454)
...+.-++|+||||||||||+++|+|.+++.. ...+.+.+++.. .. .. +.++++.|.. .+..++
T Consensus 32 i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~ 111 (529)
T PRK15134 32 IEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTL 111 (529)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhH
Confidence 34677899999999999999999999987410 023444443211 01 11 2355555542 222455
Q ss_pred hhhhhccc---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 104 RSSISGWI---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 104 ~e~l~~~~---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
.+++.... ...... ...+++++..+++.... .........+++++ +||+.+|+||+||||+ +||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD 188 (529)
T PRK15134 112 EKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA---KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188 (529)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH---HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccC
Confidence 55543111 111111 13345555555552100 01122344555554 6889999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhC-Cc-EEEEecCCCc
Q 012882 171 VFAIVALSGIVSRLLST-GT-VLVATSNRAP 199 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~-G~-vlV~ThN~~P 199 (454)
+..+..+.++|.++.++ |. ||++||+...
T Consensus 189 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 219 (529)
T PRK15134 189 VSVQAQILQLLRELQQELNMGLLFITHNLSI 219 (529)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence 99999999999999765 66 9999999653
No 280
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=1.7e-13 Score=122.96 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=105.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhh-hcc-
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSI-SGW- 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l-~~~- 110 (454)
..++.-+.|.||+|||||||+++++..+++. . +.+.|.+- ....+..+.|+.|. -.-.-|+.+|+ |-|
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~-~--G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~ 102 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISPT-S--GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQ 102 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccCCC-C--ceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchH
Confidence 4567889999999999999999999998753 3 34444321 23567788888876 22345777776 433
Q ss_pred ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 111 ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 111 ~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.....++...+-.++..+++.. ..+..-+..++++. |.|.--|+||+|||+| .||+.++..+.+++-
T Consensus 103 ~r~rr~dr~aa~~llar~~l~~-----~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~ 177 (223)
T COG4619 103 IRNRRPDRAAALDLLARFALPD-----SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIH 177 (223)
T ss_pred HhccCCChHHHHHHHHHcCCch-----hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHH
Confidence 2333445566666666666633 12222333444443 4556789999999999 799999999999998
Q ss_pred HHH-hCCc-EEEEecCC
Q 012882 183 RLL-STGT-VLVATSNR 197 (454)
Q Consensus 183 ~L~-~~G~-vlV~ThN~ 197 (454)
.++ ++.+ ++-+||+.
T Consensus 178 ~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 178 RYVREQNVAVLWITHDK 194 (223)
T ss_pred HHhhhhceEEEEEecCh
Confidence 888 5666 99999984
No 281
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.3e-14 Score=139.32 Aligned_cols=154 Identities=15% Similarity=0.181 Sum_probs=91.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..++.-++|+|+||+|||||+++|+|... +.....+.+.+++.. ....+.+.+++++ ... .++.+++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl 104 (250)
T PRK14266 26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNV 104 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc-chHHHHH
Confidence 34678899999999999999999999753 110123344443311 1234456666655 222 3666665
Q ss_pred hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
....... ..+. ..+.+++..+++.... ..........+++++ +||+.+|+||+||||+ ++|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~ 182 (250)
T PRK14266 105 AYGLRIHGEDDEDFIEERVEESLKAAALWDEV--KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST 182 (250)
T ss_pred HhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence 2211110 1111 2223333333331100 000111122344443 6888999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCc-EEEEecCC
Q 012882 175 VALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 175 ~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
..+.++|.++.+ |. +|++||+.
T Consensus 183 ~~l~~~l~~~~~-~~tiii~sh~~ 205 (250)
T PRK14266 183 TKIEDLIHKLKE-DYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHHhc-CCeEEEEECCH
Confidence 999999999965 55 89999974
No 282
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.51 E-value=5.7e-14 Score=154.13 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=102.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+|+||||||||+|++.|...|. .| ++.+++. ...+++.++++.|+ .....|+.||+..+..
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~-~G--~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p 572 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ-QG--RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP 572 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC
Confidence 3456669999999999999999999998753 44 4444432 24677888888887 4556688888744332
Q ss_pred CCCCChHHHHHHHHHHhhhh-----HHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQ-----EVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~-----~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
... +++.. ..+...+.+. ..+.+..+.+-...+++++ |||+++|+||+|||+| .+|..+.+++.+
T Consensus 573 ~~~-~e~i~-~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~ 650 (709)
T COG2274 573 EAT-DEEII-EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650 (709)
T ss_pred CCC-HHHHH-HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence 222 11111 1111111111 0111222233333455555 7899999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCC
Q 012882 180 IVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~ 197 (454)
-|.++....++|++||+.
T Consensus 651 ~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 651 NLLQILQGRTVIIIAHRL 668 (709)
T ss_pred HHHHHhcCCeEEEEEccc
Confidence 999987655599999974
No 283
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.7e-14 Score=142.81 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~ 108 (454)
..+++-++|+|+||||||||+++|+|..+.. ....+.+.+.+.- ..++..+.+++|.. ....|+.+++.
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~ 184 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVA 184 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHH
Confidence 4567789999999999999999999987520 0123444443211 23445566666651 22357777763
Q ss_pred ccc-cCCCCChH----HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 109 GWI-TNLPFDSK----VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 109 ~~~-~~~~~~~~----~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
... .....+.. ..+..+...++... ....+..-...+++++ ||++.+|+||+||||+ ++|+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~ 262 (329)
T PRK14257 185 YGPRNNGINDRKILEKIVEKSLKSAALWDE--VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262 (329)
T ss_pred hHHHhcCCChHHHHHHHHHHHHHHcCCcch--hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 211 11011111 12333333333110 0111122233445554 7889999999999999 89999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 012882 176 ALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+.++|..+.+..++|++||+.
T Consensus 263 ~i~~~i~~l~~~~Tii~iTH~l 284 (329)
T PRK14257 263 KIEELILELKKKYSIIIVTHSM 284 (329)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999998754499999984
No 284
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.51 E-value=7.7e-14 Score=136.38 Aligned_cols=149 Identities=15% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE---------EechhH-HHHHHH-------HHHHhhh--hhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF---------HFHEAM-LKINEH-------MHRLWKN--QVAE 100 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv---------~f~~f~-~~~~~~-------i~~~~~~--~~~~ 100 (454)
..+++-++|+||||||||||+++|+|..++. .|...+ .+.+.. ...... +.++.+. ..+
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~- 100 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIP- 100 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCc-
Confidence 3467889999999999999999999998752 343320 011110 000000 0111111 000
Q ss_pred cchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 101 KSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 101 ~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
.++.+++..... ........++++..+++.. ........+++++ ++++.+|++++||||+ ++|+.
T Consensus 101 ~~~~~~i~~~l~-~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 101 KAVKGKVGELLK-KKDERGKLDELVDQLELRH------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred hHHHHHHHHHhc-hhHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 111222211110 0011133444444444422 1122233344443 6888999999999999 89999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+..+..++.++.++|. +|++||+.
T Consensus 174 ~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 174 QRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 99999999999987776 88899874
No 285
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.50 E-value=4.1e-14 Score=137.24 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=42.1
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+|++.+|+||+||||+ ++|+.++..+.++|..+.+.|. ||++||+.
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6888999999999999 8999999999999999987766 89999984
No 286
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=1.4e-13 Score=123.99 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH---HHH-----HHHHHHhhh--hhcccchhhhhhc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML---KIN-----EHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~---~~~-----~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
..++..+.|+||+|+||||||-+++|.-.+ ..+..++..+.... +.. +.++.+.|. +.+.++..||+.-
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l 111 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDP-SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCC-CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence 356788999999999999999999998764 35666665543321 111 112223333 3455566666521
Q ss_pred --cccC--CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 110 --WITN--LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 110 --~~~~--~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.+.+ .......+..+++..++... +.....+++++. ||++..|+||+-|||| +||-++...+
T Consensus 112 PleL~ge~~~~~~~~A~~lL~~vGLg~R------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~i 185 (228)
T COG4181 112 PLELRGESSADSRAGAKALLEAVGLGKR------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185 (228)
T ss_pred hhhhcCCccccHHHHHHHHHHHhCcccc------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHH
Confidence 2222 12222445566666665332 222333444432 6788999999999999 6999999999
Q ss_pred HHHHHHHHh-CCc-EEEEecCC
Q 012882 178 SGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
.+++-.+.. +|. .+++||+.
T Consensus 186 aDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 186 ADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred HHHHHHHhhhcCceEEEEeCCH
Confidence 999988875 577 88899984
No 287
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.50 E-value=2.9e-14 Score=154.17 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhcccc--CC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWIT--NL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~--~~ 114 (454)
..++.-++|+|+||||||||+++|+|.+++. . +.|.+... ..++++.|. ....+|+.+++..... ..
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~--G~i~~~~~-----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 418 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-S--GTIKIGET-----VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV 418 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--eEEEECCc-----eEEEEEeCchhhcCCCCCHHHHHHhhcccccc
Confidence 4566779999999999999999999998742 3 44544321 135555554 2345677777632211 11
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
.......+.++..+++... .....+..+++++ ++++.+|+||+||||+ +||+..+..+.++|..+
T Consensus 419 ~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 491 (556)
T PRK11819 419 GNREIPSRAYVGRFNFKGG-----DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-- 491 (556)
T ss_pred cccHHHHHHHHHhCCCChh-----HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--
Confidence 1122233455565555211 1122344566655 6888999999999999 89999999999999987
Q ss_pred CCcEEEEecCC
Q 012882 187 TGTVLVATSNR 197 (454)
Q Consensus 187 ~G~vlV~ThN~ 197 (454)
.|.+|++|||.
T Consensus 492 ~~tvi~vtHd~ 502 (556)
T PRK11819 492 PGCAVVISHDR 502 (556)
T ss_pred CCeEEEEECCH
Confidence 36799999985
No 288
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.50 E-value=6.8e-14 Score=150.88 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=98.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|+||||||||+++++|..++ ..|...+..... ....++.+.+++|+. ....|+.+|+.... .
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~--~ 417 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG--E 417 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC--C
Confidence 456778999999999999999999999874 244333322211 123456677777762 22347888874221 1
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+...+.+...++.... +.+..+..-...+++++ ||++++|++|+||||+ ++|..++..+.+.+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l 497 (544)
T TIGR01842 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI 497 (544)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 12333333333333332210 01111111233455554 7899999999999999 89999999999999
Q ss_pred HHHHhCCc-EEEEecCC
Q 012882 182 SRLLSTGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN~ 197 (454)
..+..+|. +|++||+.
T Consensus 498 ~~~~~~~~tvi~ith~~ 514 (544)
T TIGR01842 498 KALKARGITVVVITHRP 514 (544)
T ss_pred HHHhhCCCEEEEEeCCH
Confidence 98875565 88888873
No 289
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.50 E-value=7.6e-14 Score=136.43 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=90.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~ 114 (454)
..+++-++|+|+||+|||||+++|+|.+++ ..+...+..... ....+..+.++.+.. ....|+.+++....
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~--- 119 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC--- 119 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCC---
Confidence 356788999999999999999999999874 344433332221 112344555555541 11235555442110
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..........+...++.... +.+..+......+++++ +||+.+|++|+||||+ ++|+..+..+.+++
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 199 (257)
T cd03288 120 KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV 199 (257)
T ss_pred CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 01122222332222222110 01111111122344443 7889999999999999 89999999999999
Q ss_pred HHHHhCCc-EEEEecCC
Q 012882 182 SRLLSTGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN~ 197 (454)
..+.+ |. +|++||+.
T Consensus 200 ~~~~~-~~tiii~sh~~ 215 (257)
T cd03288 200 MTAFA-DRTVVTIAHRV 215 (257)
T ss_pred HHhcC-CCEEEEEecCh
Confidence 98754 55 88889885
No 290
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.50 E-value=2.4e-14 Score=152.42 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=40.6
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
++|+.+|+||+||||| .||+.+..+|.+.|..+ .|++||+||+|.
T Consensus 166 ~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~gtviiVSHDR~ 211 (530)
T COG0488 166 RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSHDRY 211 (530)
T ss_pred HHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CCcEEEEeCCHH
Confidence 6888999999999999 79999999999988866 568999999984
No 291
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.50 E-value=6.8e-14 Score=132.14 Aligned_cols=138 Identities=12% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
..++.-++|.|+||||||||+++|+|..++ .. +.+.+++.. ......+.++.+.. ....|+.+++....
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~- 106 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEA-EE--GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD- 106 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCC-CC--CeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccC-
Confidence 346777999999999999999999998864 23 444443321 12234455555541 11235666552110
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
........+.+. +. .-...+++++ ++++.+|++|+||||+ ++|+.....+.++|..+
T Consensus 107 --~~~~~~~~~~l~---~~----------~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 107 --EYSDEEIYGALR---VS----------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred --CCCHHHHHHHhh---cc----------CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 111111111111 11 0111222222 6778999999999999 89999999999999998
Q ss_pred HhCCc-EEEEecCC
Q 012882 185 LSTGT-VLVATSNR 197 (454)
Q Consensus 185 ~~~G~-vlV~ThN~ 197 (454)
.+ |. +|++||+.
T Consensus 172 ~~-~~tiii~th~~ 184 (207)
T cd03369 172 FT-NSTILTIAHRL 184 (207)
T ss_pred cC-CCEEEEEeCCH
Confidence 54 66 88899874
No 292
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.50 E-value=2.8e-14 Score=154.11 Aligned_cols=143 Identities=18% Similarity=0.208 Sum_probs=95.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhcccc--CC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWIT--NL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~--~~ 114 (454)
...+.-++|+||||||||||+++|+|.+++. . +.+.++.- ..++++.|. ....+|+.+++..... ..
T Consensus 345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~--G~i~~~~~-----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 416 (552)
T TIGR03719 345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-S--GTIKIGET-----VKLAYVDQSRDALDPNKTVWEEISGGLDIIQL 416 (552)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-C--eEEEECCc-----eEEEEEeCCccccCCCCcHHHHHHhhcccccc
Confidence 3566779999999999999999999998642 3 34444321 135555554 2345677777633221 11
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
.......+.++..+++... ........+++++ ++|+.+|+||+||||+ +||+..+..+.++|..+
T Consensus 417 ~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 489 (552)
T TIGR03719 417 GKREVPSRAYVGRFNFKGS-----DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-- 489 (552)
T ss_pred CcchHHHHHHHHhCCCChh-----HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--
Confidence 1112233445555555211 1122344566655 6888999999999999 89999999999999988
Q ss_pred CCcEEEEecCC
Q 012882 187 TGTVLVATSNR 197 (454)
Q Consensus 187 ~G~vlV~ThN~ 197 (454)
.|.||++|||.
T Consensus 490 ~~~viivsHd~ 500 (552)
T TIGR03719 490 AGCAVVISHDR 500 (552)
T ss_pred CCeEEEEeCCH
Confidence 35799999985
No 293
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.1e-14 Score=150.76 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=92.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhhh-----hcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKNQ-----VAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~~-----~~~~t~~e~l 107 (454)
...++-++|+|+||||||||+++|+|..++ .. +.+.+++.- ......+.++++.. ....++.++.
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 347 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREK-SA--GTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNS 347 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcC-Cc--cEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhe
Confidence 355677999999999999999999999874 23 344443210 11122244454431 2334433321
Q ss_pred -hccc----c--CCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882 108 -SGWI----T--NLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV 169 (454)
Q Consensus 108 -~~~~----~--~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l 169 (454)
.... . ..... ...++.++..+++.. +........+++++ ++++.+|+||+||||+ ++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gL 422 (491)
T PRK10982 348 LISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-----PGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI 422 (491)
T ss_pred ehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-----CCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 1110 0 10001 122344444444421 11223344555554 6888999999999999 89
Q ss_pred CHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 170 DVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 170 D~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
|+..+..+.+++..+.++|. ||++||+.
T Consensus 423 D~~~~~~~~~~l~~l~~~~~tvi~vsHd~ 451 (491)
T PRK10982 423 DVGAKFEIYQLIAELAKKDKGIIIISSEM 451 (491)
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence 99999999999999988777 99999985
No 294
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.50 E-value=5e-14 Score=136.99 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhH-----HHHHH--HHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAM-----LKINE--HMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~-----~~~~~--~i~~~~~~--~~~~~t~~e~l~ 108 (454)
..++.-++|+|+||||||||+++|+|.. ++ ..| .+.+.+.. ..... .+.++.+. ..+..++.+++.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~ 106 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEG--DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLR 106 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-CCc--eEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHH
Confidence 4567889999999999999999999973 32 233 44433211 00001 12222222 222334444442
Q ss_pred ccccC------CC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHH-Hhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882 109 GWITN------LP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVAD-KFLVDQ-------HADQRGASILCFDEIQ-T 168 (454)
Q Consensus 109 ~~~~~------~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~-~l~~~~-------rAL~~~p~lL~LDEp~-~ 168 (454)
..... .. ... ..++.++..+++... ....... .+++++ +||+.+|+||+||||+ +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 181 (252)
T CHL00131 107 LAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS-----FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG 181 (252)
T ss_pred HhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh-----hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 11100 00 010 122344444444210 0011111 244443 6888999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 169 VDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 169 lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+|+.++..+.++|.++.++|. ||++||+.
T Consensus 182 LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 182 LDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 999999999999999987776 88999974
No 295
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.50 E-value=7.2e-14 Score=148.78 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=96.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhhhh--c--ccchhhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKNQV--A--EKSLRSSI 107 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~~~--~--~~t~~e~l 107 (454)
...++.-++|+||||||||||+++|+|..++...| .+.+.+. .......++++.+... . ..++.+++
T Consensus 282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~ 359 (490)
T PRK10938 282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN--DLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVI 359 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC--eEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHH
Confidence 34567789999999999999999999976521133 3433221 1123345666666521 1 12444444
Q ss_pred hcccc---CC--CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 108 SGWIT---NL--PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 108 ~~~~~---~~--~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
..... .. ... ...++.++..+++... ........+++++ +||+.+|+||+||||+ ++|+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~ 434 (490)
T PRK10938 360 LSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR-----TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP 434 (490)
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHcCCchh-----hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 22111 00 011 1344556666665320 1122344555554 6888999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCC-c-EEEEecCC
Q 012882 172 FAIVALSGIVSRLLSTG-T-VLVATSNR 197 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~G-~-vlV~ThN~ 197 (454)
..+..+.++|.++.++| . ||++|||.
T Consensus 435 ~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 435 LNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 99999999999998764 4 89999985
No 296
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.49 E-value=1e-13 Score=126.79 Aligned_cols=122 Identities=17% Similarity=0.075 Sum_probs=76.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
..+++-++|.|+||||||||+++++|.+++. .+++.+... ..+.++.++. . .+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~-----~~i~~~~q~~--------------~--~~~~t 79 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG-----EDLLFLPQRP--------------Y--LPLGT 79 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC-----ceEEEECCCC--------------c--ccccc
Confidence 3567889999999999999999999998742 344444321 2233333321 0 01123
Q ss_pred HHHHHHHH--HhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882 120 VMEWVAAE--EKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN 196 (454)
Q Consensus 120 ~~e~ll~~--~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN 196 (454)
+.+++... ..+.+ .......+| +|++.+|++|+||||+ ++|+..+..+.+++.++ ...+|++||+
T Consensus 80 v~~nl~~~~~~~LS~---G~~~rv~la-------ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~ 147 (166)
T cd03223 80 LREQLIYPWDDVLSG---GEQQRLAFA-------RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147 (166)
T ss_pred HHHHhhccCCCCCCH---HHHHHHHHH-------HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCC
Confidence 33333210 00100 001112223 4566999999999999 89999999999999887 2348999998
Q ss_pred C
Q 012882 197 R 197 (454)
Q Consensus 197 ~ 197 (454)
.
T Consensus 148 ~ 148 (166)
T cd03223 148 P 148 (166)
T ss_pred h
Confidence 4
No 297
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.49 E-value=7.1e-14 Score=154.93 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=103.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|+||||||||+++|.|..++. .|...+...+. ...+++.+.+++|+ ..-..|+.+|+.....
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-- 564 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-- 564 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC--
Confidence 4567889999999999999999999998752 44333332221 13566778888877 3334688888843321
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+...+.+...++.+.. +.+..+..-...+++++ ||++++|++|+||||| ++|+.+...+.+.+
T Consensus 565 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l 644 (694)
T TIGR03375 565 YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL 644 (694)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 23445555555555543311 11111111122345554 7899999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecCC
Q 012882 182 SRLLSTGTVLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN~ 197 (454)
..+.+..++|++||+.
T Consensus 645 ~~~~~~~T~iiItHrl 660 (694)
T TIGR03375 645 KRWLAGKTLVLVTHRT 660 (694)
T ss_pred HHHhCCCEEEEEecCH
Confidence 9987644599999973
No 298
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.49 E-value=9e-14 Score=151.25 Aligned_cols=155 Identities=12% Similarity=0.177 Sum_probs=103.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|+||||||||++++.|..+| ..|...+...+. ...+++.+.+++|+ ..-..|+.+|+.... .
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~--~ 434 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR--P 434 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC--C
Confidence 356778999999999999999999999875 244444332221 23567778888877 233458888884321 1
Q ss_pred CCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+.....+...++..... .+..+..-...+++++ |||+++|+||+||||+ ++|+.+...+.+.+
T Consensus 435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l 514 (588)
T PRK13657 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 123444555555555433211 1111111122355554 7999999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecCC
Q 012882 182 SRLLSTGTVLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN~ 197 (454)
..+....++|++||+.
T Consensus 515 ~~~~~~~tvIiitHr~ 530 (588)
T PRK13657 515 DELMKGRTTFIIAHRL 530 (588)
T ss_pred HHHhcCCEEEEEEecH
Confidence 8886544599999973
No 299
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=5.2e-13 Score=122.80 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=116.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
..+.++-..|+||||+|||||+.+.+..++. ..|...+...+. ..++.+.+..++|+ ....+|+++.+..+.+
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf 101 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF 101 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence 3455666899999999999999999998874 244444444332 34677888888887 4556789888833333
Q ss_pred CCC------CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 113 NLP------FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 113 ~~~------~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
+.. .+...++..++.+.+ .+.-.+..+++++++ ..++++.+.++||||. .||...+..+.
T Consensus 102 PYSqGRlt~eD~~~I~~aieyl~L------~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iM 175 (252)
T COG4604 102 PYSQGRLTKEDRRIINEAIEYLHL------EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIM 175 (252)
T ss_pred cccCCCCchHHHHHHHHHHHHhcc------cchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHH
Confidence 321 122334444444444 333456778888887 3667999999999999 89999999999
Q ss_pred HHHHHHHhC-Cc-EEEEecCCCccchhcCC
Q 012882 179 GIVSRLLST-GT-VLVATSNRAPWDLNQDG 206 (454)
Q Consensus 179 ~ll~~L~~~-G~-vlV~ThN~~P~dLy~~~ 206 (454)
++++++.++ |+ ++++-|+...+..|.+.
T Consensus 176 k~Lrrla~el~KtiviVlHDINfAS~YsD~ 205 (252)
T COG4604 176 KILRRLADELGKTIVVVLHDINFASCYSDH 205 (252)
T ss_pred HHHHHHHHHhCCeEEEEEecccHHHhhhhh
Confidence 999999864 66 99999999888888765
No 300
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.9e-13 Score=125.40 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=86.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
...++.-+.++||+|||||||+++++|...|. . +++..+.-. +. ....-+..+||...-++| .
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~-~--G~i~l~~r~------i~-------gPgaergvVFQ~~~LlPW-l 89 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPS-R--GSIQLNGRR------IE-------GPGAERGVVFQNEALLPW-L 89 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcc-c--ceEEECCEe------cc-------CCCccceeEeccCccchh-h
Confidence 34567889999999999999999999988642 2 233221100 00 000011122332222222 2
Q ss_pred HHHHHHHHHHhhhhHHhh---------------cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 119 KVMEWVAAEEKYKQEVQM---------------KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~---------------~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
++.+|+...+.+.+-.+. .+.-....-++++++ |||+.+|++|+||||. .+|.-++.
T Consensus 90 ~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe 169 (259)
T COG4525 90 NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE 169 (259)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHH
Confidence 344444444444321000 000011222334443 7999999999999999 69999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNRA 198 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~~ 198 (454)
.+..++-.+++. |. ++++||+..
T Consensus 170 ~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 170 QMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred HHHHHHHHHHHHhCCeEEEEeccHH
Confidence 999999999864 77 999999864
No 301
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.49 E-value=6.9e-14 Score=154.84 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=103.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+|+||||||||+++|.|..+|. .|...+...+. ...+++.+++++|+ ..-..|+.+|+.....
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~- 552 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP- 552 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-
Confidence 34567889999999999999999999998752 44333332221 23567788888887 3345688888844321
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
.+.+...+.+...++.+.- +.+..+..-...+++++ |||+++|++|+||||| .+|..+...+.+.
T Consensus 553 --~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~ 630 (686)
T TIGR03797 553 --LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES 630 (686)
T ss_pred --CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 3455555556655554321 11111111223455554 7999999999999999 8999999999888
Q ss_pred HHHHHhCCcEEEEecC
Q 012882 181 VSRLLSTGTVLVATSN 196 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN 196 (454)
+..+ ..++|++||+
T Consensus 631 L~~~--~~T~IiItHr 644 (686)
T TIGR03797 631 LERL--KVTRIVIAHR 644 (686)
T ss_pred HHHh--CCeEEEEecC
Confidence 8876 2358999987
No 302
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.48 E-value=1e-13 Score=150.37 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=102.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI 111 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~ 111 (454)
..++++-++|+|+||||||||+++|+|..++. .| .+.+++. ....++.+++++|+ ..-..|+.+|+....
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-~G--~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~ 438 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SG--RILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR 438 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CC--EEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC
Confidence 34567889999999999999999999998742 34 4444331 23456778888877 334568888884321
Q ss_pred cCCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
. ..+.+...+.+...++.... +.+..+..-...+++++ ||++++|++|+||||+ ++|..++..+.
T Consensus 439 ~--~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~ 516 (576)
T TIGR02204 439 P--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ 516 (576)
T ss_pred C--CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHH
Confidence 1 12334455555554443211 11111111223355554 7999999999999999 89999999999
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 012882 179 GIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~vlV~ThN~ 197 (454)
+.+..+.+..++|++||+.
T Consensus 517 ~~l~~~~~~~t~IiitH~~ 535 (576)
T TIGR02204 517 QALETLMKGRTTLIIAHRL 535 (576)
T ss_pred HHHHHHhCCCEEEEEecch
Confidence 9999886533499999974
No 303
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.48 E-value=4.3e-14 Score=150.42 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=91.8
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh---hcccchhhhhhccccCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ---VAEKSLRSSISGWITNLP 115 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~~~~~ 115 (454)
....+.-++|+||||+||||||++|.|.+.+. . +.+..... -.++|+.|+. ....++.+.+.......
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~--G~v~~g~~-----v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~- 414 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-S--GTVKVGET-----VKIGYFDQHRDELDPDKTVLEELSEGFPDG- 414 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccC-C--ceEEeCCc-----eEEEEEEehhhhcCccCcHHHHHHhhCccc-
Confidence 44567789999999999999999999987642 2 23322111 1122222221 12224444443222111
Q ss_pred CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882 116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~ 187 (454)
....+..+++.+.+.+.. ....+..+++++ +.++.+|.||+||||| .||+.+...|.+.|..+ .
T Consensus 415 -~e~~~r~~L~~f~F~~~~-----~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~ 486 (530)
T COG0488 415 -DEQEVRAYLGRFGFTGED-----QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--E 486 (530)
T ss_pred -cHHHHHHHHHHcCCChHH-----HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--C
Confidence 145666777777775422 123344555554 3556899999999999 69999999999888887 7
Q ss_pred CcEEEEecCC
Q 012882 188 GTVLVATSNR 197 (454)
Q Consensus 188 G~vlV~ThN~ 197 (454)
|+||++||||
T Consensus 487 Gtvl~VSHDr 496 (530)
T COG0488 487 GTVLLVSHDR 496 (530)
T ss_pred CeEEEEeCCH
Confidence 8999999997
No 304
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.48 E-value=9.3e-14 Score=154.38 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|++|||||||+++|.|..+|. .|...+...+. ..++++.+++++|+ ..-..|+.+|+.... .
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~--~ 578 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD--P 578 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC--C
Confidence 4567789999999999999999999998752 44443333222 23567788888887 334568888884321 1
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+...+.+...++...- +.+..+..-...+++++ |||+++|+||+||||| ++|..+...+.+.+
T Consensus 579 ~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l 658 (710)
T TIGR03796 579 TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL 658 (710)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH
Confidence 23444455555555543311 11111222223455554 7999999999999999 89999999998888
Q ss_pred HHHHhCCc-EEEEecC
Q 012882 182 SRLLSTGT-VLVATSN 196 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN 196 (454)
.. .++ +|++||+
T Consensus 659 ~~---~~~T~IiitHr 671 (710)
T TIGR03796 659 RR---RGCTCIIVAHR 671 (710)
T ss_pred Hh---cCCEEEEEecC
Confidence 75 355 8889987
No 305
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.48 E-value=9.6e-14 Score=150.53 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+||||||||||+++|.|..++. .|...+..... ....++.+.+++|+. .-..|+.+|+.....
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-- 414 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP-- 414 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC--
Confidence 3567779999999999999999999998752 44443332221 124556677777762 223478888743211
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+..+..+...++.... +.+..+..-...+++++ ||++++|++|+||||+ ++|+.+...+.+.+
T Consensus 415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l 494 (569)
T PRK10789 415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494 (569)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 12333444444433332110 00111111122344444 7889999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecCC
Q 012882 182 SRLLSTGTVLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN~ 197 (454)
..+.+..++|++||+.
T Consensus 495 ~~~~~~~tii~itH~~ 510 (569)
T PRK10789 495 RQWGEGRTVIISAHRL 510 (569)
T ss_pred HHHhCCCEEEEEecch
Confidence 8886433488999874
No 306
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.48 E-value=1.2e-13 Score=149.84 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=104.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI 111 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~ 111 (454)
..++++-++|+||||||||||+++|+|..++. .| .+.+++. ....++.+.+++|+ ..-..|+.+|+....
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~-~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~ 438 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QG--EILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA 438 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--eEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC
Confidence 34567889999999999999999999998742 34 4444331 23456777888777 233458888873322
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHh----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQ----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. ..+.+...+.+...++..... .+..+..-...+++++ ||++++|++|+||||+ ++|..+...+.+
T Consensus 439 ~--~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~ 516 (574)
T PRK11160 439 P--NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE 516 (574)
T ss_pred C--ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1 234455555666555543211 1111112223355554 7899999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCC
Q 012882 180 IVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~ 197 (454)
.+..+.+..++|++||+.
T Consensus 517 ~l~~~~~~~tviiitHr~ 534 (574)
T PRK11160 517 LLAEHAQNKTVLMITHRL 534 (574)
T ss_pred HHHHHcCCCEEEEEecCh
Confidence 999886533488999874
No 307
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.47 E-value=8.8e-14 Score=137.08 Aligned_cols=150 Identities=16% Similarity=0.105 Sum_probs=92.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC-Cc-ccCceEEEechhH-HHHHH-HHHHHhhhhhcccchhhhhhccccC-
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE-GI-VKHRQRFHFHEAM-LKINE-HMHRLWKNQVAEKSLRSSISGWITN- 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~-~~-~~~k~rv~f~~f~-~~~~~-~i~~~~~~~~~~~t~~e~l~~~~~~- 113 (454)
....++-++|+|.+||||||+.++|.|.+| ++ ....+.+.|++.- ..+.. .+..++.+ -..++||....
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~------~I~mIfQ~p~~s 100 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGK------EIAMIFQDPMTS 100 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCc------eEEEEEcCchhh
Confidence 345678899999999999999999999997 31 1223466665531 11111 11111111 11223443222
Q ss_pred CCCChHHHH-----------------------HHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEe
Q 012882 114 LPFDSKVME-----------------------WVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCF 163 (454)
Q Consensus 114 ~~~~~~~~e-----------------------~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~L 163 (454)
+..-.++.+ ++++..++.. .+..+.....++++++ .||+.+|+|||.
T Consensus 101 LnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~---~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 101 LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD---PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred cCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC---HHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 111112222 2222222211 1112233334556665 488999999999
Q ss_pred eCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882 164 DEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 164 DEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
|||| .||+..+..+.++|++|.+ .|. +|++|||.
T Consensus 178 DEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999 8999999999999999987 577 99999995
No 308
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.47 E-value=1.5e-13 Score=147.65 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=103.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI 111 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~ 111 (454)
..++++-++|+|++|||||||+++|.|..++. . +.+.+++. ..+.++.+++++|+ ..-..|+.+|+....
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~--G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~ 420 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-E--GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-C--cEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccC
Confidence 34567779999999999999999999998752 3 44444332 23567778888887 233468888884322
Q ss_pred cCCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
. ..+.+...+.+...++.+.. +.+..+.+-...+++++ ||++++|++|+||||+ ++|+.+...+.
T Consensus 421 ~--~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~ 498 (529)
T TIGR02857 421 P--DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT 498 (529)
T ss_pred C--CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 1 12334444555554443311 11112222233455554 7999999999999999 89999999999
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 012882 179 GIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~vlV~ThN~ 197 (454)
+.+..+.+..++|++||+.
T Consensus 499 ~~l~~~~~~~t~i~itH~~ 517 (529)
T TIGR02857 499 EALRALAQGRTVLLVTHRL 517 (529)
T ss_pred HHHHHhcCCCEEEEEecCH
Confidence 9999886433499999974
No 309
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=1.2e-13 Score=155.42 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=108.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC-CCcccCceEEEechhH-HHHHHHHHHHhhh--hhcccchhhhh--hccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT-EGIVKHRQRFHFHEAM-LKINEHMHRLWKN--QVAEKSLRSSI--SGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l-~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~~~ 114 (454)
.|+.=..|+|++|+|||||||+|+|.. .|.+.|..+|...... ....+..+++.|. +.+..||+|.+ .++++..
T Consensus 815 kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp 894 (1391)
T KOG0065|consen 815 KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLP 894 (1391)
T ss_pred cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCC
Confidence 345557899999999999999999974 4445666666554443 3455677888776 56888999988 3333322
Q ss_pred C-CC-h---HHHHHHHHHHhhhhHHhhcchHHH-HHHHhhhhh-------hhhccCC-cEEEeeCCC-CCCHHHHHHHHH
Q 012882 115 P-FD-S---KVMEWVAAEEKYKQEVQMKNILPA-VADKFLVDQ-------HADQRGA-SILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 115 ~-~~-~---~~~e~ll~~~~l~~~~~~~~~l~~-va~~l~~~~-------rAL~~~p-~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. .+ . +-+|++++.+++... .+.+-. ..+.|+.++ ..|+.+| .||+||||| |||..+|..+.+
T Consensus 895 ~~v~~~ek~~yVe~Vi~lleL~~~---~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~ 971 (1391)
T KOG0065|consen 895 KEVSDEEKYEYVEEVIELLELKEY---ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMR 971 (1391)
T ss_pred CcCCHHHHHHHHHHHHHHhCchhh---hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHH
Confidence 1 11 1 345666666665321 111000 001133333 3788999 899999999 999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCccchh
Q 012882 180 IVSRLLSTGTVLVATSNRAPWDLN 203 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~~P~dLy 203 (454)
+++.+.+.|..|++|-+.|..++.
T Consensus 972 ~lrkla~tGqtIlCTIHQPS~~if 995 (1391)
T KOG0065|consen 972 FLRKLADTGQTILCTIHQPSIDIF 995 (1391)
T ss_pred HHHHHHhcCCeEEEEecCCcHHHH
Confidence 999999999988888777655543
No 310
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=7.9e-14 Score=151.28 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEE-----------echhH-HHHHHHH-------HHHhhh--hh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFH-----------FHEAM-LKINEHM-------HRLWKN--QV 98 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~-----------f~~f~-~~~~~~i-------~~~~~~--~~ 98 (454)
+.+++-++|+||||+|||||+++|+|.++|. . +.+. |.+.- ......+ .+..+. ..
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~--G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~ 172 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPN-L--GDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLI 172 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCC-C--ccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhh
Confidence 4566779999999999999999999998753 3 3332 21110 0000000 000010 00
Q ss_pred c---ccchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882 99 A---EKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ- 167 (454)
Q Consensus 99 ~---~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~- 167 (454)
+ ..++.+++.. ......+++++..+++.. ........|++++ ++|+.+|+||+||||+
T Consensus 173 p~~~~~tv~e~l~~-----~~~~~~~~~~l~~l~l~~------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts 241 (590)
T PRK13409 173 PKVFKGKVRELLKK-----VDERGKLDEVVERLGLEN------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241 (590)
T ss_pred hhhhcchHHHHHHh-----hhHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 0 0022222210 001123334444444421 1222334455554 5888999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 168 TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 168 ~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
+||+..+..+.++|.++.+ |. ||++||+..
T Consensus 242 ~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 242 YLDIRQRLNVARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred CCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 8999999999999999988 77 999999864
No 311
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.47 E-value=1.3e-13 Score=153.27 Aligned_cols=154 Identities=12% Similarity=0.095 Sum_probs=101.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|++|||||||+++|.|..+| ..|...+...+. ...+++.+++++|+ ..-..|+.+|+..+...
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~- 574 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE- 574 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-
Confidence 456788999999999999999999999875 244444433222 13566778888887 33345888888543111
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+...+.+...++.+.- +.+..+..-...+++++ ||++++|++|+||||| ++|..+...+.+.+
T Consensus 575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L 654 (708)
T TIGR01193 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654 (708)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 23344444555544443211 11111122223345554 7999999999999999 89999999999988
Q ss_pred HHHHhCCc-EEEEecCC
Q 012882 182 SRLLSTGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN~ 197 (454)
..+ +|+ +|++||+.
T Consensus 655 ~~~--~~~T~IiitHr~ 669 (708)
T TIGR01193 655 LNL--QDKTIIFVAHRL 669 (708)
T ss_pred HHh--cCCEEEEEecch
Confidence 875 355 88999873
No 312
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=2.9e-13 Score=122.71 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=101.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech-----------------hHHHHHHHHHHHhhh--hhccc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE-----------------AMLKINEHMHRLWKN--QVAEK 101 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~-----------------f~~~~~~~i~~~~~~--~~~~~ 101 (454)
..+.-+-|+|.+||||||+++||.-.-.| ..+..+++..+ ....++.+++.+.|. +...+
T Consensus 30 ~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm 108 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM 108 (256)
T ss_pred CCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence 35566999999999999999999653322 34444443321 234556667777665 45567
Q ss_pred chhhhhhccccC---CCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882 102 SLRSSISGWITN---LPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T 168 (454)
Q Consensus 102 t~~e~l~~~~~~---~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~ 168 (454)
|+.+|+.-.+-. .+..+ +.++.++...++..+.. .....+++++ |||+.+|++++||||| .
T Consensus 109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~------~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSA 182 (256)
T COG4598 109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD------AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182 (256)
T ss_pred HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh------cCccccCchHHHHHHHHHHHhcCCceEeecCCccc
Confidence 777776443222 22222 45556666666644322 1112234333 6888999999999999 7
Q ss_pred CCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 169 VDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 169 lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
||+.-...+.+++..|.+.|. .+++||.+
T Consensus 183 LDPElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred CCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 999999999999999999998 89999976
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.9e-14 Score=150.89 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=85.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccc------
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWI------ 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~------ 111 (454)
..++.-++|+|||||||||||++|+|.+++. .| .+.+... ..++++.|. .....|+.+++....
T Consensus 24 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G--~i~~~~~-----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 95 (530)
T PRK15064 24 FGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AG--NVSLDPN-----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEV 95 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--eEEecCC-----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHH
Confidence 3467789999999999999999999998642 33 3332210 112222221 112223333321000
Q ss_pred -------cC----------------------CCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhh
Q 012882 112 -------TN----------------------LPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HAD 154 (454)
Q Consensus 112 -------~~----------------------~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL 154 (454)
.. ..+. ...++.++..+++.... .......+++++ ++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~~LSgGq~qrv~lA~aL 170 (530)
T PRK15064 96 KQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ-----HYGLMSEVAPGWKLRVLLAQAL 170 (530)
T ss_pred HHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH-----hcCchhhcCHHHHHHHHHHHHH
Confidence 00 0000 12334444444442110 011234566665 688
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP 199 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P 199 (454)
+.+|+||+||||+ +||+..+..+.++|.. .|. ||++||+...
T Consensus 171 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~ 214 (530)
T PRK15064 171 FSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHF 214 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHH
Confidence 8999999999999 8999999999998864 455 9999998643
No 314
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.47 E-value=1.6e-13 Score=149.16 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=98.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+||||||||||++++.|..++ ..|...+..... ....++.+++++|+ .....|+.+|+......
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~ 435 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCC-CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC
Confidence 3456788999999999999999999999875 244333322211 12455667777776 22345788887432211
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
.+.+...+.+...++.... +.+..+..-...+++++ |||+++|++|+||||+ ++|..+...+.+.
T Consensus 436 --~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~ 513 (585)
T TIGR01192 436 --ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA 513 (585)
T ss_pred --CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 1233333333332222110 01111111122345554 7899999999999999 8999999999999
Q ss_pred HHHHHhCCcEEEEecCC
Q 012882 181 VSRLLSTGTVLVATSNR 197 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN~ 197 (454)
+..+.+..++|++||+.
T Consensus 514 l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 514 IDALRKNRTTFIIAHRL 530 (585)
T ss_pred HHHHhCCCEEEEEEcCh
Confidence 99886533489999874
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.47 E-value=3.6e-14 Score=156.84 Aligned_cols=143 Identities=15% Similarity=0.087 Sum_probs=87.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhh--hccccCCCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSI--SGWITNLPFD 117 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l--~~~~~~~~~~ 117 (454)
...+.-++|+||||||||||+++|+|.+++. .| .+.++. ...++++.|.....+++.++. ..........
T Consensus 532 i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~-~G--~I~~~~-----~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~ 603 (718)
T PLN03073 532 IDLDSRIAMVGPNGIGKSTILKLISGELQPS-SG--TVFRSA-----KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 603 (718)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-Cc--eEEECC-----ceeEEEEeccccccCCcchhHHHHHHHhcCCCC
Confidence 3456779999999999999999999998742 33 333321 112344444322222222221 1000000122
Q ss_pred hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882 118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT 189 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~ 189 (454)
...++.++..+++... ........+++++ ++++.+|++|+||||+ +||+.+...+.+.+..+ .|+
T Consensus 604 ~~~i~~~L~~~gl~~~-----~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gt 676 (718)
T PLN03073 604 EQKLRAHLGSFGVTGN-----LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGG 676 (718)
T ss_pred HHHHHHHHHHCCCChH-----HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCE
Confidence 3455666666666321 0111233455554 6788999999999999 89999999888777665 467
Q ss_pred EEEEecCC
Q 012882 190 VLVATSNR 197 (454)
Q Consensus 190 vlV~ThN~ 197 (454)
||++||+.
T Consensus 677 vIivSHd~ 684 (718)
T PLN03073 677 VLMVSHDE 684 (718)
T ss_pred EEEEECCH
Confidence 99999985
No 316
>PLN03140 ABC transporter G family member; Provisional
Probab=99.46 E-value=1.1e-13 Score=162.84 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCC-cccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSI-SGWITN 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~-~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~ 113 (454)
.+++-++|+|||||||||||++|+|..++ ...| .+.+++.. ....+.++++.|. ..+.+|+.|++ +.....
T Consensus 904 ~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G--~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr 981 (1470)
T PLN03140 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG--DIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981 (1470)
T ss_pred ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc--eEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhC
Confidence 45677999999999999999999998642 2233 34443321 1223445677665 45678999987 322111
Q ss_pred CCC--Ch----HHHHHHHHHHhhhhHHhhcchHH-HHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 114 LPF--DS----KVMEWVAAEEKYKQEVQMKNILP-AVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 114 ~~~--~~----~~~e~ll~~~~l~~~~~~~~~l~-~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.+. +. ..+++++..+++....+. .+. ...+.+++++ ++|+.+|+||+||||+ +||..++..+.
T Consensus 982 ~~~~~~~~~~~~~v~~vl~~lgL~~~~~~--~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140 982 LPKEVSKEEKMMFVDEVMELVELDNLKDA--IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCChhHhCC--ccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 111 11 235666776666432110 000 0013455554 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCC
Q 012882 179 GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+.+.|. ||++||+.
T Consensus 1060 ~~L~~l~~~g~tVI~t~Hq~ 1079 (1470)
T PLN03140 1060 RTVRNTVDTGRTVVCTIHQP 1079 (1470)
T ss_pred HHHHHHHHCCCEEEEEeCCC
Confidence 99999998887 78888774
No 317
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=2.6e-13 Score=122.63 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=73.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
.+++-++|+|+||+|||||+++|+|.+++ ..+++.++... ......+.++ ++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~--------------~q----- 80 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELRRRIGYV--------------PQ----- 80 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHHhceEEE--------------ee-----
Confidence 45678999999999999999999999874 24455554321 0111111111 11
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV 192 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV 192 (454)
+.+ .......+++ +++.+|+++|||||+ ++|..++..+.+++..+.+.|. +++
T Consensus 81 ---------------lS~---G~~~r~~l~~-------~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~ 135 (157)
T cd00267 81 ---------------LSG---GQRQRVALAR-------ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135 (157)
T ss_pred ---------------CCH---HHHHHHHHHH-------HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 000 0001122343 445889999999999 8999999999999999877666 888
Q ss_pred EecCC
Q 012882 193 ATSNR 197 (454)
Q Consensus 193 ~ThN~ 197 (454)
+||+.
T Consensus 136 ~sh~~ 140 (157)
T cd00267 136 VTHDP 140 (157)
T ss_pred EeCCH
Confidence 88874
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.46 E-value=7e-14 Score=151.15 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc-----
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT----- 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~----- 112 (454)
..++.-++|+||||||||||+++|+|.+++ ..| .+.++. ...+++++|. ..+.+|+.+++.....
T Consensus 30 i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~~G--~i~~~~-----~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~ 101 (556)
T PRK11819 30 FFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FEG--EARPAP-----GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAA 101 (556)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEecC-----CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHH
Confidence 456778999999999999999999999864 233 333321 1123444443 2233455555421100
Q ss_pred -----------CCC-----------------------CC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh------
Q 012882 113 -----------NLP-----------------------FD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ------ 151 (454)
Q Consensus 113 -----------~~~-----------------------~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~------ 151 (454)
... +. ...++.++..+++. . .......+++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~-~~~~~~~LSgGqkqrv~l 174 (556)
T PRK11819 102 LDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP------P-WDAKVTKLSGGERRRVAL 174 (556)
T ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC------c-ccCchhhcCHHHHHHHHH
Confidence 000 00 11222333333331 0 122334556665
Q ss_pred -hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 152 -HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 152 -rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
++|+.+|++|+||||+ +||+.....+.++|..+ .++||++||+..
T Consensus 175 a~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~ 221 (556)
T PRK11819 175 CRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRY 221 (556)
T ss_pred HHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence 6889999999999999 89999999999999887 357999999964
No 319
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.46 E-value=9.9e-14 Score=163.35 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=101.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--hHHHHHHHHHHHhhh--hhcccchhhhh-hccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--AMLKINEHMHRLWKN--QVAEKSLRSSI-SGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~~ 114 (454)
..+++-++|+|||||||||||++|+|..++.....+.+.+++ .....++.++++.|+ ....+|+.|++ +......
T Consensus 786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~ 865 (1394)
T TIGR00956 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQ 865 (1394)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCC
Confidence 345677999999999999999999998752111223444432 222345567777775 45678999988 3221111
Q ss_pred C--CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCc-EEEeeCCC-CCCHHHHHHHHH
Q 012882 115 P--FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGAS-ILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 115 ~--~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~-lL~LDEp~-~lD~~~a~~L~~ 179 (454)
+ .+. ..+++++..+++....+ ..+......+++++ ++|+.+|+ ||+||||+ +||..++..+.+
T Consensus 866 ~~~~~~~~~~~~v~~~l~~l~L~~~~d--~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~ 943 (1394)
T TIGR00956 866 PKSVSKSEKMEYVEEVIKLLEMESYAD--AVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICK 943 (1394)
T ss_pred CCCCCHHHHHHHHHHHHHHcCChhhCC--CeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence 1 111 33456666666533111 00000001344443 57889997 99999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|+++.++|. ||++||+.
T Consensus 944 ~L~~la~~g~tvI~t~H~~ 962 (1394)
T TIGR00956 944 LMRKLADHGQAILCTIHQP 962 (1394)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 9999988887 77777764
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.46 E-value=2.3e-13 Score=134.92 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=82.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccCCCCCh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~~~~ 118 (454)
..+++-++|+|+||||||||+++|+|.+++. .| .+.++. .+.++.|.. ....++.+++..... ...
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-~G--~I~i~g-------~i~yv~q~~~l~~~tv~enl~~~~~---~~~ 126 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPS-EG--KIKHSG-------RISFSSQFSWIMPGTIKENIIFGVS---YDE 126 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--EEEECC-------EEEEEeCcccccccCHHHHhhcccc---cCH
Confidence 4567779999999999999999999998742 33 333332 133333331 111255555532111 111
Q ss_pred HHHHHHHHHHhhhhHHhh-cc----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHHH
Q 012882 119 KVMEWVAAEEKYKQEVQM-KN----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSRL 184 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~-~~----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L 184 (454)
......+...++...... .. .+......+++++ ++|+.+|++|+||||+ ++|+..+..+.++ +..+
T Consensus 127 ~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~ 206 (282)
T cd03291 127 YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL 206 (282)
T ss_pred HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence 111222222222111000 00 0000112344443 6888999999999999 8999999988875 4566
Q ss_pred HhCCcEEEEecCC
Q 012882 185 LSTGTVLVATSNR 197 (454)
Q Consensus 185 ~~~G~vlV~ThN~ 197 (454)
.+...||++||+.
T Consensus 207 ~~~~tIiiisH~~ 219 (282)
T cd03291 207 MANKTRILVTSKM 219 (282)
T ss_pred hCCCEEEEEeCCh
Confidence 4433488999985
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.1e-13 Score=151.67 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=86.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--------hHHHHHHHHHHHhhhh--hcccchh-----
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--------AMLKINEHMHRLWKNQ--VAEKSLR----- 104 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--------f~~~~~~~i~~~~~~~--~~~~t~~----- 104 (454)
..++.-++|+|||||||||||++|+|.+++. .|...+..+. ........+.++.+.. ...++..
T Consensus 24 i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 102 (638)
T PRK10636 24 INPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDAN 102 (638)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4567789999999999999999999987642 3322221110 0000001112221110 0000000
Q ss_pred -----hh---hhccccCC--CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 105 -----SS---ISGWITNL--PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 105 -----e~---l~~~~~~~--~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
.. +....... ......++.++..+++.. .........+++++ ++|+.+|+||+||||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-----~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPt 177 (638)
T PRK10636 103 ERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-----EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPT 177 (638)
T ss_pred ccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-----hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCC
Confidence 00 00000000 011234555666665521 11122344556554 6888999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 168 -TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 168 -~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
+||+.+...|.++|..+ .+.||++||++..
T Consensus 178 n~LD~~~~~~L~~~L~~~--~~tviivsHd~~~ 208 (638)
T PRK10636 178 NHLDLDAVIWLEKWLKSY--QGTLILISHDRDF 208 (638)
T ss_pred CcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHH
Confidence 89999999999998876 3569999999754
No 322
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.44 E-value=1.4e-13 Score=127.08 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=41.4
Q ss_pred hhhccC--CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG--ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~--p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++++.+ |++|+||||+ ++|+..+..+.+++.++.+.|. ||++||+.
T Consensus 100 ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 466789 9999999999 8999999999999999987777 89999984
No 323
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.44 E-value=2.5e-13 Score=149.52 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=103.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccC-----
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITN----- 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~----- 113 (454)
.++++-++|+||||||||||+++|+|..++. . +.+.... +..+.+++|+. ....|+.+++......
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~-~--G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 546 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVY-G--GRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR 546 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--CeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhc
Confidence 4567779999999999999999999988742 2 3443321 23456666652 2223777777322110
Q ss_pred CCCChHHHHHHHHHHhhhhHHhhc---chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQMK---NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~~~---~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
........++++...++....... +........+++++ ||++++|++|+||||+ ++|+.....+.+++.
T Consensus 547 ~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~ 626 (659)
T TIGR00954 547 RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626 (659)
T ss_pred cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 112234455666666554321100 00011123455554 7899999999999999 899999999988877
Q ss_pred HHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhh
Q 012882 183 RLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYR 235 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR 235 (454)
+. |. +|++||+. +.++...+++.+++...|+
T Consensus 627 ~~---~~tvI~isH~~-------------------~~~~~~d~il~l~~~g~~~ 658 (659)
T TIGR00954 627 EF---GITLFSVSHRK-------------------SLWKYHEYLLYMDGRGGYQ 658 (659)
T ss_pred Hc---CCEEEEEeCch-------------------HHHHhCCEEEEEeCCCCcc
Confidence 63 65 88999874 2344455666676654443
No 324
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.44 E-value=2.7e-13 Score=150.25 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=101.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|+||||||||+++|+|..++. .|...+...+. ..++++.+.+++|+ ..-..|+.+|+.....
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~-~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-- 556 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ-HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-- 556 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--
Confidence 4567789999999999999999999998742 44443332221 23456777777776 2334588888743211
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.....+.+...++.... +.+..+..-...+++++ |||+++|++|+||||+ ++|..+...+.+.+
T Consensus 557 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l 636 (694)
T TIGR01846 557 GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM 636 (694)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 12334444444444443210 11111112223455554 7899999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecCC
Q 012882 182 SRLLSTGTVLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN~ 197 (454)
..+....++|++||+.
T Consensus 637 ~~~~~~~t~i~itH~~ 652 (694)
T TIGR01846 637 REICRGRTVIIIAHRL 652 (694)
T ss_pred HHHhCCCEEEEEeCCh
Confidence 9885433489999874
No 325
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.44 E-value=2.5e-13 Score=150.92 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=99.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+||||||||||+++|.|..++. .|...+...+. ..++++.+++++|+ ..-..|+++|+.....
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~- 580 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT- 580 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-
Confidence 34567889999999999999999999999752 44444433222 24567788888887 3345688888843321
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..+++...+.+...++.... +.+..+..-...+++++ ||++++|+||+||||| .+|..+...+.+
T Consensus 581 -~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~- 658 (711)
T TIGR00958 581 -DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE- 658 (711)
T ss_pred -CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-
Confidence 12344455555554443211 11111222223455554 7999999999999999 899999888887
Q ss_pred HHHHHhCCc-EEEEecC
Q 012882 181 VSRLLSTGT-VLVATSN 196 (454)
Q Consensus 181 l~~L~~~G~-vlV~ThN 196 (454)
.. . ..++ +|++||+
T Consensus 659 ~~-~-~~~~TvIiItHr 673 (711)
T TIGR00958 659 SR-S-RASRTVLLIAHR 673 (711)
T ss_pred hh-c-cCCCeEEEEecc
Confidence 22 2 2455 8999997
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.43 E-value=3.5e-13 Score=120.44 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=71.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
..+++-++|.|+||+|||||+++++|..++ ..+.+.++.. ..+.++.+ +|.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~-----~~i~~~~~-----lS~---------------- 73 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST-----VKIGYFEQ-----LSG---------------- 73 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe-----EEEEEEcc-----CCH----------------
Confidence 356788999999999999999999999874 2345554431 11111111 000
Q ss_pred HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.......+|+ |++.+|++|+||||+ ++|+.++..+.+++.++ ...++++||+.
T Consensus 74 ----------------G~~~rv~lar-------al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~ 127 (144)
T cd03221 74 ----------------GEKMRLALAK-------LLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127 (144)
T ss_pred ----------------HHHHHHHHHH-------HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCH
Confidence 0001122343 455899999999999 89999999999999887 23588899874
No 327
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.43 E-value=1.5e-13 Score=148.59 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=86.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc-----
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT----- 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~----- 112 (454)
...+.-++|+|+|||||||||++|+|..++ ..| .+.++. ...++++.|. ....+|+.+++.....
T Consensus 28 i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~G--~i~~~~-----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~ 99 (552)
T TIGR03719 28 FFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FNG--EARPAP-----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDA 99 (552)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEecC-----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHH
Confidence 345677999999999999999999999864 233 333321 1224444443 2234566665521100
Q ss_pred -----------CCCCCh------------------------HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh------
Q 012882 113 -----------NLPFDS------------------------KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ------ 151 (454)
Q Consensus 113 -----------~~~~~~------------------------~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~------ 151 (454)
...... ..++.++..+++. . .......+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~-~~~~~~~LSgGqkqrv~l 172 (552)
T TIGR03719 100 LDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP------P-WDADVTKLSGGERRRVAL 172 (552)
T ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC------c-ccCchhhcCHHHHHHHHH
Confidence 000000 1111122222220 0 112234555554
Q ss_pred -hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 152 -HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 152 -rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
++|+.+|++|+||||+ +||+..+..+.++|..+ .++||++||+..
T Consensus 173 a~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~ 219 (552)
T TIGR03719 173 CRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRY 219 (552)
T ss_pred HHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence 6889999999999999 89999999999998876 356999999864
No 328
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.42 E-value=2.1e-13 Score=143.44 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=94.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechh-HHH-HH--------HHHHHHhhh----hhcccch
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEA-MLK-IN--------EHMHRLWKN----QVAEKSL 103 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f-~~~-~~--------~~i~~~~~~----~~~~~t~ 103 (454)
...+++-++|+|.+||||||++.++.|.++.. ....++|.|+.- ... .. +.+.++.|+ ..+-.++
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 44678899999999999999999999999843 123567777653 110 01 122222222 1111122
Q ss_pred hhhhhc---cccCCCCC--hHHHHHHHHHHhhhhHHhhcchHH--HHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882 104 RSSISG---WITNLPFD--SKVMEWVAAEEKYKQEVQMKNILP--AVADKFLVDQ-------HADQRGASILCFDEIQ-T 168 (454)
Q Consensus 104 ~e~l~~---~~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~--~va~~l~~~~-------rAL~~~p~lL~LDEp~-~ 168 (454)
...+.- ........ ...+.+++...++. ++.. ....++++++ +||+.+|+||++|||| .
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~------~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTa 184 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLP------DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTA 184 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCC------ChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 111100 00000000 01222233333332 2222 2556777776 6999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHHHh-CCc-EEEEecCCC
Q 012882 169 VDVFAIVALSGIVSRLLS-TGT-VLVATSNRA 198 (454)
Q Consensus 169 lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~ 198 (454)
||+..+.++.++|+.+.+ .|. +|++|||..
T Consensus 185 LDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~ 216 (539)
T COG1123 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence 999999999999999985 577 999999953
No 329
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-12 Score=136.21 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=100.8
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI 111 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~ 111 (454)
...+++-+.|+|++|||||||+.++.|..+++ .+.+++++- -.++.+.+..+.|. ..-.-|+++|+.-..
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~ 436 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN 436 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC
Confidence 34567889999999999999999999988742 345555442 12356667666665 333456777763322
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHhhc-----chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQMK-----NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~~~-----~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.. .+.+.....+...++.+..... ..+.+-.+.++++. |+|++++++++||||| +||+.+...+.
T Consensus 437 ~~--AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL 514 (573)
T COG4987 437 PD--ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL 514 (573)
T ss_pred CC--CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHH
Confidence 11 2333444444555543321111 11112223344443 6888999999999999 99999999988
Q ss_pred HHHHHHHhCCcEEEEecCCC
Q 012882 179 GIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 179 ~ll~~L~~~G~vlV~ThN~~ 198 (454)
+++.+-.+..++|++||+..
T Consensus 515 ~ll~~~~~~kTll~vTHrL~ 534 (573)
T COG4987 515 ALLFEHAEGKTLLMVTHRLR 534 (573)
T ss_pred HHHHHHhcCCeEEEEecccc
Confidence 88877766555999999863
No 330
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.41 E-value=7.3e-13 Score=129.56 Aligned_cols=177 Identities=13% Similarity=0.138 Sum_probs=117.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHH-HHHHHHHhhh--hhcccchhhhhhcc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKI-NEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~-~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+.-+.|+|-+|||||||++++.+.++| ..++..+...+.. .++ .+.+..+.|+ +.+..|+.+|+-..
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLiep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG 130 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG 130 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence 44566889999999999999999999985 3555555443221 122 2445556565 45667777776322
Q ss_pred --ccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 --ITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 --~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
..+.+..+ +++.+.++..++.++. .....++++++ |||+.+|+||++|||+ .|||--+..+.
T Consensus 131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQ 204 (386)
T COG4175 131 LEVQGVPKAEREERALEALELVGLEGYA------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ 204 (386)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCchhhh------hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHH
Confidence 22333222 3444555555554322 22345566665 7999999999999999 79999999999
Q ss_pred HHHHHHHhC--CcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhh
Q 012882 179 GIVSRLLST--GTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY 234 (454)
Q Consensus 179 ~ll~~L~~~--G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~Dy 234 (454)
.-|.+|.++ .+++++||+...+--.-++ |. |.+.++++..+++.+.
T Consensus 205 deLl~Lq~~l~KTIvFitHDLdEAlriG~r---------Ia-imkdG~ivQ~Gtp~eI 252 (386)
T COG4175 205 DELLELQAKLKKTIVFITHDLDEALRIGDR---------IA-IMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHHHHhCCeEEEEecCHHHHHhccce---------EE-EecCCeEEEeCCHHHH
Confidence 888888764 3499999986444333333 33 5678888888887543
No 331
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.41 E-value=5.3e-12 Score=114.11 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH------HHHHHHHHHhhhhhcc--cchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML------KINEHMHRLWKNQVAE--KSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~------~~~~~i~~~~~~~~~~--~t~~e~l~~~~ 111 (454)
..++.-+-++||||||||||+-.++|.+|+ . +.|.|.+... ++.+.-.|+.|...+. +.+ |+.+
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~--s--Gsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV----~~YL 93 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSG--S--GSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV----WHYL 93 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCC--C--ceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh----hhhh
Confidence 456777999999999999999999999974 2 3444443221 2222233444432221 222 3322
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh--------------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ--------------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~--------------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.-.-.+.++...+-...+. .+.++.+.+....++++. ..+-...++|++|||. .+|++....
T Consensus 94 ~L~qP~~~~a~~i~~i~~~---L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a 170 (248)
T COG4138 94 TLHQPDKTRTELLNDVAGA---LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA 170 (248)
T ss_pred hhcCchHHHHHHHHHHHhh---hcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH
Confidence 2222233444433332222 234556666777777765 2344567899999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
|.+++.++...|. ||++.|+.
T Consensus 171 Ldrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 171 LDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred HHHHHHHHHhCCcEEEEeccch
Confidence 9999999999999 77777763
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.41 E-value=6e-13 Score=128.14 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=102.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
.-..|.|++|+|||||+++|+|.+.| .+++++.++.. .--+++++|+.|+ +++.+|+..|+....
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rP---deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~ 101 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRP---DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM 101 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCc---cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence 33669999999999999999999874 34555544321 2234678888887 788899999883222
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR 183 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~ 183 (454)
... .....+.+...+++.. .+.+.-..++++. |||+..|++|++|||. .||.....++.-.+++
T Consensus 102 ~~~--~~~~fd~iv~lLGI~h------LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylER 173 (352)
T COG4148 102 WKS--MRAQFDQLVALLGIEH------LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER 173 (352)
T ss_pred ccc--chHhHHHHHHHhCcHH------HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHH
Confidence 111 2345566666666533 2233333445443 7899999999999999 8999999999999999
Q ss_pred HHhC-Cc-EEEEecCC
Q 012882 184 LLST-GT-VLVATSNR 197 (454)
Q Consensus 184 L~~~-G~-vlV~ThN~ 197 (454)
|.++ .+ ++.+||..
T Consensus 174 L~~e~~IPIlYVSHS~ 189 (352)
T COG4148 174 LRDEINIPILYVSHSL 189 (352)
T ss_pred HHHhcCCCEEEEecCH
Confidence 9876 66 99999963
No 333
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=2e-12 Score=122.87 Aligned_cols=144 Identities=14% Similarity=0.111 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhc--cccCCCCCh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISG--WITNLPFDS 118 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~--~~~~~~~~~ 118 (454)
..+.-++|+|+||||||||+++|+|.++|. .++..+...-.. +-.+.....+++|.++|+.. ...++...+
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-~G~v~v~G~v~~------li~lg~Gf~pelTGreNi~l~~~~~G~~~~e 123 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPT-SGKVKVTGKVAP------LIELGAGFDPELTGRENIYLRGLILGLTRKE 123 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCC-CceEEEcceEeh------hhhcccCCCcccchHHHHHHHHHHhCccHHH
Confidence 456779999999999999999999999863 555555432110 00112224456777777622 222222222
Q ss_pred --HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC
Q 012882 119 --KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG 188 (454)
Q Consensus 119 --~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G 188 (454)
...+++.+...+... +..-.+.++.++ -|...+|++|++||.. +-|..-+..=.+.+.++.+++
T Consensus 124 i~~~~~eIieFaELG~f------i~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~ 197 (249)
T COG1134 124 IDEKVDEIIEFAELGDF------IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197 (249)
T ss_pred HHHHHHHHHHHHHHHHH------hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence 455555555554332 111122233332 2556899999999999 899998888888888886665
Q ss_pred c-EEEEecCC
Q 012882 189 T-VLVATSNR 197 (454)
Q Consensus 189 ~-vlV~ThN~ 197 (454)
. ++++||+.
T Consensus 198 ~tiv~VSHd~ 207 (249)
T COG1134 198 KTIVLVSHDL 207 (249)
T ss_pred CEEEEEECCH
Confidence 6 99999984
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.40 E-value=3.8e-13 Score=147.83 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=96.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHH----HHHHHHHhhh--hhcccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKI----NEHMHRLWKN--QVAEKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~----~~~i~~~~~~--~~~~~t~~e~l 107 (454)
..+++-+.|+|+||||||||+++|+|..++ ..+++.+++.. ... .+.+.++.|. ..+..++.+++
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 107 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKP---TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV 107 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHH
Confidence 356788999999999999999999999874 23455554321 111 1234555554 23345666665
Q ss_pred hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... ...... ...+.+++..+++... +......+++++ ++|+.+|++|+||||+ ++|+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~------~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~ 181 (648)
T PRK10535 108 EVPAVYAGLERKQRLLRAQELLQRLGLEDR------VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181 (648)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCChhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 2111 111111 1233444555544321 112223344443 7888999999999999 89999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
.+.+++.++.++|. ++++||+..
T Consensus 182 ~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 182 EVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred HHHHHHHHHHhcCCEEEEECCCHH
Confidence 99999999987776 899999853
No 335
>PRK08181 transposase; Validated
Probab=99.39 E-value=2e-12 Score=127.02 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 121 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 121 (454)
.+++++|+||+|+|||+|+.++...+. ..+..+.|.... ++...+.....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~~-~L~~~l~~a~~-------------------------- 154 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRTT-DLVQKLQVARR-------------------------- 154 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeHH-HHHHHHHHHHh--------------------------
Confidence 467899999999999999999987552 223455554332 22222211100
Q ss_pred HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
......+.+.+ .+++|||+||+. ..+...+..|.+++....++ .-+|+|+|.+|
T Consensus 155 ---------------~~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~ 210 (269)
T PRK08181 155 ---------------ELQLESAIAKL--------DKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPF 210 (269)
T ss_pred ---------------CCcHHHHHHHH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCH
Confidence 00112233333 579999999998 47788888999999988775 47888889999
Q ss_pred cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882 200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.+|..---+...-...+++|.++|.++.+.++ |||+..
T Consensus 211 ~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~-s~R~~~ 248 (269)
T PRK08181 211 GEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE-SYRRRT 248 (269)
T ss_pred HHHHHhcCCccchhhHHHhhhcCceEEecCCc-cchhHH
Confidence 99987332233335668999999999999986 999854
No 336
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.39 E-value=2.9e-12 Score=128.29 Aligned_cols=141 Identities=19% Similarity=0.279 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 121 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 121 (454)
.++|+||+|++|+|||+|+.+++..+...-.....+++..++..+...+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~----------------------------- 205 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISD----------------------------- 205 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhc-----------------------------
Confidence 468999999999999999999998764110111233444444433322110
Q ss_pred HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHH-HHHHHHHHHHHhCCcEEEEecCCC
Q 012882 122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAI-VALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a-~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
.......+.+ .+++||||||+. .+....+ ..|..++......+..+|+|||.+
T Consensus 206 ----------------~~~~~~l~~l--------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 206 ----------------GSVKEKIDAV--------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred ----------------CcHHHHHHHh--------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 0112233333 579999999998 3444444 455666676666677899999999
Q ss_pred ccchhcC------C-chhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882 199 PWDLNQD------G-MQREIFQKLVAKLEKHCEIIPIGSEVDYRR 236 (454)
Q Consensus 199 P~dLy~~------~-l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~ 236 (454)
+++|... | .....-...+++|.++|+++.+.|. |||.
T Consensus 262 ~~el~~~~~~~~~g~~e~~~a~ri~dRI~~~~~~i~l~G~-s~R~ 305 (306)
T PRK08939 262 FDELEHHLAYTQRGEDETWKAARIMERIRYLAKEVHLEGK-NRRN 305 (306)
T ss_pred HHHHHHHHhhhccCcchhhHHHHHHHHHHHhcEEEEeecC-CCCC
Confidence 9999872 1 1233455789999999999999987 8885
No 337
>PRK06526 transposase; Provisional
Probab=99.39 E-value=2.3e-12 Score=125.73 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 120 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~ 120 (454)
..+++++|+||+|+|||+|+.++...+. ..+.++.|.... ++...+.....
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~---~~g~~v~f~t~~-~l~~~l~~~~~------------------------- 146 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC---QAGHRVLFATAA-QWVARLAAAHH------------------------- 146 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH---HCCCchhhhhHH-HHHHHHHHHHh-------------------------
Confidence 3568999999999999999999977552 223455443221 11111111000
Q ss_pred HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
...+....+.+ .++++||+||+. ..+...+..|..++....+++ .+|+|+|.+
T Consensus 147 ----------------~~~~~~~l~~l--------~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 147 ----------------AGRLQAELVKL--------GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred ----------------cCcHHHHHHHh--------ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 00111122233 468999999998 467888889999998877765 577888999
Q ss_pred ccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882 199 PWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 199 P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
|.+|+.---++..-...+++|.++|.++.+.|+ |||...
T Consensus 202 ~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~-s~R~~~ 240 (254)
T PRK06526 202 FGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGD-SYRLKD 240 (254)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCceEEeecCC-Ccchhh
Confidence 999987544455556778999999999999986 999854
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=2.3e-12 Score=120.04 Aligned_cols=163 Identities=14% Similarity=0.119 Sum_probs=104.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---H-HHHHHHHHHhhh----hhcccchhhhhhcc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---L-KINEHMHRLWKN----QVAEKSLRSSISGW 110 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~-~~~~~i~~~~~~----~~~~~t~~e~l~~~ 110 (454)
..+.+.-+-++|.||+|||||+++++|.+++ ..++..+...... . .-...+..+.|+ ..+.+|+.||+..+
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la 106 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA 106 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCcccc-CCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHH
Confidence 3445666999999999999999999999975 3555555443221 1 112334555555 35678999997332
Q ss_pred cc-----CCCC--ChHHHHHH---HHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 111 IT-----NLPF--DSKVMEWV---AAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 111 ~~-----~~~~--~~~~~e~l---l~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
.. ++.. ..++.+.. +..+++ +..+.+..-...+++++ .|.++.|+||+|||-| .|||.
T Consensus 107 ~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~l----gLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPk 182 (263)
T COG1101 107 ESRGKKRGLSSALNERRRSSFRERLARLGL----GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPK 182 (263)
T ss_pred HhcCcccccchhhhHHHHHHHHHHHhhccc----chhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcc
Confidence 21 1221 11222222 222221 12333444455566665 4677999999999999 89999
Q ss_pred HHHHHHHHHHHHHhCC-c-EEEEecCCCccchhcCC
Q 012882 173 AIVALSGIVSRLLSTG-T-VLVATSNRAPWDLNQDG 206 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~G-~-vlV~ThN~~P~dLy~~~ 206 (454)
.+..+.++=.++.++. . .+++|||..-+--|-++
T Consensus 183 ta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~R 218 (263)
T COG1101 183 TAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNR 218 (263)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCe
Confidence 9999999999988764 4 99999997544444444
No 339
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.39 E-value=1.2e-12 Score=141.67 Aligned_cols=151 Identities=12% Similarity=0.107 Sum_probs=91.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+||||||||||+++|+|..++. .|...+...+. ..+.++.+.++.|+. .-..++.++. ..
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-----~~ 438 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ-EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-----GE 438 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc-----cc
Confidence 3567779999999999999999999988752 44444332211 124455666666541 1122333331 01
Q ss_pred CCChHHHHHHHHHHhhhhHHhh-cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQM-KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSRL 184 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~-~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L 184 (454)
..+.+..++.+...++...... .+-+.. ...+++++ ||++++|++|+||||+ ++|+.+...+.+. +..+
T Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~ 517 (555)
T TIGR01194 439 HASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL 517 (555)
T ss_pred chhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1122344445555554321100 000000 13455554 7889999999999999 8999999998764 4556
Q ss_pred HhCCc-EEEEecCC
Q 012882 185 LSTGT-VLVATSNR 197 (454)
Q Consensus 185 ~~~G~-vlV~ThN~ 197 (454)
...|+ +|++||+.
T Consensus 518 ~~~~~tiiiisH~~ 531 (555)
T TIGR01194 518 KRQGKTIIIISHDD 531 (555)
T ss_pred HhCCCEEEEEeccH
Confidence 55566 88899873
No 340
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.38 E-value=7.5e-13 Score=142.90 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=89.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+||||||||||+++|+|..++ ..|...+..... ...+++.+.++.|+. .-+.|+.++ ..
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n------~~ 418 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE------GK 418 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc------cC
Confidence 456778999999999999999999999874 234333322211 124455566665542 111222222 01
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
..+.+..++.+..+++.......+... -...+++++ ||++++|++|+||||+ ++|+.+...+.+.+..+.+
T Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~ 497 (547)
T PRK10522 419 PANPALVEKWLERLKMAHKLELEDGRI-SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ 497 (547)
T ss_pred chHHHHHHHHHHHcCCchhhhccccCC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 122233444444444322110000000 012345554 7889999999999999 8999999999888876543
Q ss_pred -CCc-EEEEecC
Q 012882 187 -TGT-VLVATSN 196 (454)
Q Consensus 187 -~G~-vlV~ThN 196 (454)
.|. +|++||+
T Consensus 498 ~~~~tvi~itH~ 509 (547)
T PRK10522 498 EMGKTIFAISHD 509 (547)
T ss_pred hCCCEEEEEEec
Confidence 455 9999997
No 341
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.38 E-value=1.5e-12 Score=141.19 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=111.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+||+|||||||+++|.+..++ ..|+..+...+. ...+++.++.++|+ ..-+.|+.+|+.-....
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~- 429 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD- 429 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC-
Confidence 457788999999999999999999999975 355555533221 23577888888877 23346888888433222
Q ss_pred CCChHHHHHHHHHHhhhhH---H--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQE---V--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~---~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
.+.+...+.+......+. . +.+..+.+-...+++++ ||++++|++|+|||+| .+|..+...+.+.+
T Consensus 430 -at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l 508 (567)
T COG1132 430 -ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508 (567)
T ss_pred -CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH
Confidence 223333333333322221 0 11111111123445554 7999999999999999 89999999999999
Q ss_pred HHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 182 SRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
..+.+..++++++|+ +..++..-+++.++.+
T Consensus 509 ~~l~~~rT~iiIaHR-------------------lsti~~aD~IiVl~~G 539 (567)
T COG1132 509 KKLLKGRTTLIIAHR-------------------LSTIKNADRIIVLDNG 539 (567)
T ss_pred HHHhcCCEEEEEecc-------------------HhHHHhCCEEEEEECC
Confidence 988743358889986 3445554456666666
No 342
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.38 E-value=1.9e-12 Score=134.14 Aligned_cols=148 Identities=17% Similarity=0.187 Sum_probs=95.3
Q ss_pred CCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCC
Q 012882 38 TAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 117 (454)
Q Consensus 38 ~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~ 117 (454)
.+.....-+.++||||||||||+++++|.+.| ..|..+-|-|.-+...++..+.. ..-+.+..+++.-.... ...
T Consensus 411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~~~~~y~Qh~~e~---ldl~~s~le~~~~~~~~-~~~ 485 (614)
T KOG0927|consen 411 FGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHNKLPRYNQHLAEQ---LDLDKSSLEFMMPKFPD-EKE 485 (614)
T ss_pred cccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccccchhhhhhhHhh---cCcchhHHHHHHHhccc-cch
Confidence 34455667999999999999999999998865 34555555554443223222211 11222333333111111 234
Q ss_pred hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882 118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT 189 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~ 189 (454)
......+++.+++.+..+ ......++.++ +.+++.|.||+||||| ++|+.+.+.+.+.|++. .|.
T Consensus 486 ~e~~r~ilgrfgLtgd~q-----~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Gg 558 (614)
T KOG0927|consen 486 LEEMRSILGRFGLTGDAQ-----VVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGG 558 (614)
T ss_pred HHHHHHHHHHhCCCcccc-----ccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCc
Confidence 466777888888864322 11223334443 3556899999999999 89999999999888876 678
Q ss_pred EEEEecCC
Q 012882 190 VLVATSNR 197 (454)
Q Consensus 190 vlV~ThN~ 197 (454)
|+++||++
T Consensus 559 vv~vSHDf 566 (614)
T KOG0927|consen 559 VVLVSHDF 566 (614)
T ss_pred eeeeechh
Confidence 99999986
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.36 E-value=4.5e-12 Score=130.66 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
..++.+++|+||+|||||||.+++.|..++ ..+..|....+..+ .+-+.++|++|. ..-..|+.+|+.-.-.
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~-- 435 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE-- 435 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHccccc-CCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc--
Confidence 356788999999999999999999998875 46777776655433 344567788876 2334577777622110
Q ss_pred CCChHHHHHHHHHHhhhh------HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQ------EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~------~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
..+. +.+.+..++.+ .. +.+..+..--..+++++ |||..+|.+++||||- +||......|.
T Consensus 436 ~~d~---~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~ 512 (580)
T COG4618 436 EADP---EKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALA 512 (580)
T ss_pred cCCH---HHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHH
Confidence 0111 11222222111 00 00001110111223332 7889999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecC
Q 012882 179 GIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN 196 (454)
+-+..+.++|+ ++++||-
T Consensus 513 ~Ai~~~k~rG~~vvviaHR 531 (580)
T COG4618 513 AAILAAKARGGTVVVIAHR 531 (580)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 99999999988 8888874
No 344
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.36 E-value=2.1e-12 Score=152.56 Aligned_cols=171 Identities=12% Similarity=0.132 Sum_probs=112.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-----------------------------------------------
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV----------------------------------------------- 71 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~----------------------------------------------- 71 (454)
..++++-++|+|++|||||||+++|.+...+..
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 446778899999999999999999999886410
Q ss_pred ----cCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChHHHHHHHHHHhhhhH---H--h
Q 012882 72 ----KHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQE---V--Q 135 (454)
Q Consensus 72 ----~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~---~--~ 135 (454)
...+.|.+.+. ...+++.+++++|+ ..-..|+.+|+..... ..+.+.++..+...++... . +
T Consensus 1270 ~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~G 1347 (1466)
T PTZ00265 1270 STVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNK 1347 (1466)
T ss_pred cccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccc
Confidence 02344444321 24677888999888 3446789999844321 1233444444444443221 0 0
Q ss_pred hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCCCccchhcC
Q 012882 136 MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNRAPWDLNQD 205 (454)
Q Consensus 136 ~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~P~dLy~~ 205 (454)
.+-.+..-...|++++ |||+++|+||+||||| .||..+...+.+.|..+.. +|+ +|++||.
T Consensus 1348 ydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR--------- 1418 (1466)
T PTZ00265 1348 YDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR--------- 1418 (1466)
T ss_pred cCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech---------
Confidence 1111111122345554 7999999999999999 8999999999999998863 455 8999986
Q ss_pred CchhhhhHHHHHHHHhhccccccCC
Q 012882 206 GMQREIFQKLVAKLEKHCEIIPIGS 230 (454)
Q Consensus 206 ~l~r~~F~~~I~~L~~~~~vv~l~~ 230 (454)
+..++.--+++.++.
T Consensus 1419 ----------lsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1419 ----------IASIKRSDKIVVFNN 1433 (1466)
T ss_pred ----------HHHHHhCCEEEEEeC
Confidence 345655556666665
No 345
>PRK09183 transposase/IS protein; Provisional
Probab=99.35 E-value=7.4e-12 Score=122.67 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=97.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
...+.+++|+||+|+|||||+.+|+.... ..+..+.|.... ++...+.....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~---~~G~~v~~~~~~-~l~~~l~~a~~------------------------ 150 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV---RAGIKVRFTTAA-DLLLQLSTAQR------------------------ 150 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH---HcCCeEEEEeHH-HHHHHHHHHHH------------------------
Confidence 34578899999999999999999976542 123344443211 11111111000
Q ss_pred HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
...+..+.+.. ...+++||+||+. ..+...+..|..++....+++. +|+|+|.
T Consensus 151 -----------------~~~~~~~~~~~-------~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 151 -----------------QGRYKTTLQRG-------VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred -----------------CCcHHHHHHHH-------hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 00011122121 1468999999998 4777888899999998887664 6789999
Q ss_pred CccchhcCC-chhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882 198 APWDLNQDG-MQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 198 ~P~dLy~~~-l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
+|.+|+.-- -+...-...+++|.++|.++.+.|+ |||...
T Consensus 206 ~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~-s~R~~~ 246 (259)
T PRK09183 206 PFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGE-SYRLKQ 246 (259)
T ss_pred CHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCC-CCcccc
Confidence 999998752 2333445688999999999999986 999854
No 346
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=2.1e-12 Score=124.85 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=87.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhhhhcccchhhhhhccccCCCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 117 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~ 117 (454)
....++.++|+|++|||||||.+++.+..++ ..+.|.|.+--. .+. ..- .
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~---~~~-----------------------~ 85 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLS---KEE-----------------------R 85 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcc---hhH-----------------------H
Confidence 3456788999999999999999999999974 245666643210 000 000 0
Q ss_pred hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-C
Q 012882 118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-G 188 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G 188 (454)
.+.+.+++...++.. +.+.+.-.++++++ |||+.+|+++++|||+ .||+..+..+..+|..+.+. |
T Consensus 86 ~~~v~elL~~Vgl~~-----~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 86 RERVLELLEKVGLPE-----EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred HHHHHHHHHHhCCCH-----HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 012223333333211 11122223344443 6777999999999999 89999999999999999865 7
Q ss_pred c-EEEEecCCCccchhcC
Q 012882 189 T-VLVATSNRAPWDLNQD 205 (454)
Q Consensus 189 ~-vlV~ThN~~P~dLy~~ 205 (454)
. .+++|||..-..-.++
T Consensus 161 lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 161 LTYLFISHDLSVVRYISD 178 (268)
T ss_pred CeEEEEEEEHHhhhhhcc
Confidence 7 9999999654444443
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.35 E-value=1.8e-12 Score=142.32 Aligned_cols=46 Identities=22% Similarity=0.368 Sum_probs=41.3
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
++|+.+|+||+||||+ +||+.++..|.++|..+ .+.||++||++..
T Consensus 169 raL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~ 215 (635)
T PRK11147 169 RALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSF 215 (635)
T ss_pred HHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 6888999999999999 89999999999999987 3679999999753
No 348
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.9e-12 Score=137.15 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=103.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+||+|+||||+..+|-....|. .|...+...... ..+|+.++.+.|+ ..-..|+.||+..+..
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt-sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~- 567 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPT-SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD- 567 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-
Confidence 45678999999999999999999999988752 444444333322 3567888888887 3445688888854433
Q ss_pred CCCChHHHHHHHHHHhhhh---HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQ---EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~---~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..+++.+++.++...-++ .. +.+-...+-.-.|++++ |||+++|.||||||-| .||..+...+.+.
T Consensus 568 -~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a 646 (716)
T KOG0058|consen 568 -NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA 646 (716)
T ss_pred -CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence 233333333333222211 00 00001111112344444 7889999999999999 7999999999999
Q ss_pred HHHHHhCCcEEEEecC
Q 012882 181 VSRLLSTGTVLVATSN 196 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN 196 (454)
|.++.+..+||+++|.
T Consensus 647 L~~~~~~rTVlvIAHR 662 (716)
T KOG0058|consen 647 LDRLMQGRTVLVIAHR 662 (716)
T ss_pred HHHhhcCCeEEEEehh
Confidence 9998877569999985
No 349
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.35 E-value=3.3e-12 Score=150.97 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=98.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe-chh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF-HEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f-~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
.++++-++|+||||||||||+++|.|..++ ..|...++. +.. ...+++.++++.|+ ..-..|+.+++......
T Consensus 408 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~ 486 (1466)
T PTZ00265 408 LTEGKTYAFVGESGCGKSTILKLIERLYDP-TEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYS 486 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhccC-CCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCC
Confidence 456788999999999999999999999875 244443321 111 12456677888776 22235888887332110
Q ss_pred C-------------------------------------------------------CCChHHHHHHHHHHhhhhHH----
Q 012882 114 L-------------------------------------------------------PFDSKVMEWVAAEEKYKQEV---- 134 (454)
Q Consensus 114 ~-------------------------------------------------------~~~~~~~e~ll~~~~l~~~~---- 134 (454)
. ....+.+.+.+...++....
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 0 01112233333333332210
Q ss_pred -hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882 135 -QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 135 -~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
+.+..+..-...+++++ |||+++|+||+||||+ +||..+...+.+.|.++.+ +|. +|++||+.
T Consensus 567 ~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrl 640 (1466)
T PTZ00265 567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL 640 (1466)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 00000111123355554 7999999999999999 8999999999999999975 466 88899873
No 350
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.7e-12 Score=132.37 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=113.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..+.++-|+|+|+|||||||++++|..... .+|+.++...+.. ..+++.|++++|+ ..-+-|+..|+..+.
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn-- 449 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN-- 449 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC--
Confidence 345667799999999999999999999886 4666777665433 3567788888887 333446666662221
Q ss_pred CCCChHHHHHHHHHHhhhhH---H--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQE---V--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~---~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
...+.+.+-+.....++++. . +..-.+.+-...+++++ ||++++|+|++|||+| .||..+...+.+.
T Consensus 450 ~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~ 529 (591)
T KOG0057|consen 450 PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDM 529 (591)
T ss_pred CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHH
Confidence 12233334444444554431 0 11111222233445543 7999999999999999 7999999999888
Q ss_pred HHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 181 VSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
+.......++|++.||. +.+++--+++-++.+
T Consensus 530 i~~~~~~rTvI~IvH~l-------------------~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 530 IMDVMSGRTVIMIVHRL-------------------DLLKDFDKIIVLDNG 561 (591)
T ss_pred HHHhcCCCeEEEEEecc-------------------hhHhcCCEEEEEECC
Confidence 88855444599999984 566666677777665
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.34 E-value=1.1e-12 Score=154.45 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=99.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechhHH-HH----HHHHHHHhhh--hhcccchhhhh-hccc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEAML-KI----NEHMHRLWKN--QVAEKSLRSSI-SGWI 111 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f~~-~~----~~~i~~~~~~--~~~~~t~~e~l-~~~~ 111 (454)
.+++-++|+||||||||||+++|+|...+. ....+.|.+++... .. ++.+.++.|+ ..+.+|+.|++ +...
T Consensus 85 ~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~ 164 (1394)
T TIGR00956 85 KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAAR 164 (1394)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHH
Confidence 456779999999999999999999986321 12345666654321 11 1225566655 45678999987 3221
Q ss_pred cCC------CCCh-H----HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 112 TNL------PFDS-K----VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 112 ~~~------~~~~-~----~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
... .... + +.+.++..+++.+..+. ..-....+.+++++ ++|+.+|+|||+|||+ +||..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t-~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~ 243 (1394)
T TIGR00956 165 CKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNT-KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243 (1394)
T ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCc-eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 111 0111 1 12445566666431110 00011234455554 5888999999999999 99999
Q ss_pred HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++..+.++|+.+.+. |. +|+++|+.
T Consensus 244 ~~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 244 TALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 999999999999864 77 77777774
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=99.34 E-value=2.4e-12 Score=152.96 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=104.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+|++|||||||+++|.+..++ ..|...+...+. ..++++.++.++|+ ..-..|+++|+--. .
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~--~ 1334 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF--S 1334 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC--C
Confidence 3456788999999999999999999999875 245444443332 23567888888887 22345888888321 1
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..+.+...+.+...++.+.- +.+..+..-...+++++ |||+++|+||+|||+| .+|..+...+.+.
T Consensus 1335 -~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~ 1413 (1495)
T PLN03232 1335 -EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT 1413 (1495)
T ss_pred -CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 23444444555544443211 11111111122345554 7889999999999999 8999999999999
Q ss_pred HHHHHhCCcEEEEecCC
Q 012882 181 VSRLLSTGTVLVATSNR 197 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN~ 197 (454)
+++.++..++|++||..
T Consensus 1414 L~~~~~~~TvI~IAHRl 1430 (1495)
T PLN03232 1414 IREEFKSCTMLVIAHRL 1430 (1495)
T ss_pred HHHHcCCCEEEEEeCCH
Confidence 99887654599999873
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.33 E-value=1.6e-12 Score=153.13 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-H--HHHHHHHHhhh--hhcccchhhhh-hcc-ccC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-K--INEHMHRLWKN--QVAEKSLRSSI-SGW-ITN 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~--~~~~i~~~~~~--~~~~~t~~e~l-~~~-~~~ 113 (454)
++++-++|+||||||||||+++|+|.+++...-.+.|.+++... . .++.+.++.|+ ..+.+|+.|++ +.. ...
T Consensus 189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~ 268 (1470)
T PLN03140 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQG 268 (1470)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcC
Confidence 46677999999999999999999999864222245565544211 1 13456677665 55678999987 321 111
Q ss_pred CC--C----C--h-H---------------------------HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh------
Q 012882 114 LP--F----D--S-K---------------------------VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ------ 151 (454)
Q Consensus 114 ~~--~----~--~-~---------------------------~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~------ 151 (454)
.. . . . + ..+.++..+++....+. ..-....+.+++++
T Consensus 269 ~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t-~vg~~~~rglSGGerkRVsi 347 (1470)
T PLN03140 269 VGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDT-IVGDEMIRGISGGQKKRVTT 347 (1470)
T ss_pred CCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCc-eeCCccccCCCcccceeeee
Confidence 00 0 0 0 0 12334444444221100 00012334566665
Q ss_pred -hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882 152 -HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 152 -rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
++|+.+|++||+|||+ +||..++..+.++|+.+.+ .|. +|+++|+.
T Consensus 348 a~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 348 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred hhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 6889999999999999 9999999999999999976 466 77777764
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.32 E-value=4.4e-12 Score=127.56 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=95.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh----hhcccchhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN----QVAEKSLRS 105 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~----~~~~~t~~e 105 (454)
....++.++|+|.+|||||||-.+|...+++ .+++.|.+. |.-++.++..+.|+ +.+.+|+.+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~q 384 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence 3456788999999999999999999999873 255655432 33344444444444 233344444
Q ss_pred hhhccccCCCC--C----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 106 SISGWITNLPF--D----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 106 ~l~~~~~~~~~--~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
.+--.+.-... + ..++...+.+.++.. +...+.-.++++++ ||++.+|++++||||| .||.
T Consensus 385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-----~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-----ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-----hHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 44222211110 1 022233333444422 11222333444444 6888999999999999 7999
Q ss_pred HHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 172 FAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.-+..+.+||+.|.++ |. -+++||+.
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 9999999999999864 77 99999984
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.31 E-value=3.5e-12 Score=152.09 Aligned_cols=155 Identities=14% Similarity=0.201 Sum_probs=104.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+|++|||||||+++|.+..++. .|...+...+. ..++++.++.++|+ ..-..|+++|+--..
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~-~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-- 1337 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELE-RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-- 1337 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--
Confidence 44677889999999999999999999998752 44444433221 24677888888887 233458888883211
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..+.+...+.+...++.+.- +.+..+.+-...+++++ |||+++|+||+|||+| .+|..+...+.+.
T Consensus 1338 -~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~ 1416 (1622)
T PLN03130 1338 -EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1416 (1622)
T ss_pred -CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 23444455555554443211 11111111122345444 7899999999999999 8999999999999
Q ss_pred HHHHHhCCcEEEEecCC
Q 012882 181 VSRLLSTGTVLVATSNR 197 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN~ 197 (454)
|++.++..++|+++|..
T Consensus 1417 I~~~~~~~TvI~IAHRL 1433 (1622)
T PLN03130 1417 IREEFKSCTMLIIAHRL 1433 (1622)
T ss_pred HHHHCCCCEEEEEeCCh
Confidence 99987644599999863
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=7e-12 Score=110.78 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
..+.-+-|+||+|||||||+.-+.|.+.+...-.+++..++... .-++.++.+.|. +.+.+++.+|+...+...
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~ 105 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT 105 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc
Confidence 45677999999999999999999998876544445554444321 123345555555 567788888873332222
Q ss_pred CCChHH---HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH-H
Q 012882 115 PFDSKV---MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV-S 182 (454)
Q Consensus 115 ~~~~~~---~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll-~ 182 (454)
.+...+ +...+...++.+.. ..-...+++++ |+|+.+|+.|+||||. .+|.+-+..+++.+ .
T Consensus 106 ~KG~aRr~~a~aAL~~~gL~g~f------~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs 179 (213)
T COG4136 106 LKGNARRNAANAALERSGLDGAF------HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179 (213)
T ss_pred cccHHHHhhHHHHHHHhccchhh------hcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence 222222 22333444443321 11122334443 6888999999999999 79999998888754 6
Q ss_pred HHHhCCc-EEEEecCC
Q 012882 183 RLLSTGT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~ 197 (454)
++.+.|. ++.+||+.
T Consensus 180 ~~r~agiPtv~VTHD~ 195 (213)
T COG4136 180 EVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHhcCCCeEEEeccc
Confidence 6677799 99999985
No 357
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.31 E-value=3.7e-12 Score=121.07 Aligned_cols=41 Identities=22% Similarity=0.130 Sum_probs=37.3
Q ss_pred CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+|++||||||+ ++|+.....+.+++.++.++|. +|++||+.
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~ 193 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE 193 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch
Confidence 67999999999 8999999999999999987676 99999985
No 358
>PRK08116 hypothetical protein; Validated
Probab=99.31 E-value=1.6e-11 Score=120.89 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 121 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 121 (454)
.+.|++|+|++|+|||+|+.+++..+. ..+..+.|..+.. +...+.......
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~~~~-ll~~i~~~~~~~------------------------ 164 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVNFPQ-LLNRIKSTYKSS------------------------ 164 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHH-HHHHHHHHHhcc------------------------
Confidence 357899999999999999999998763 1234454443321 111111100000
Q ss_pred HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
.......+.+.+ .+++||||||+. .........|..+|......|..+|+|+|.+|
T Consensus 165 --------------~~~~~~~~~~~l--------~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~ 222 (268)
T PRK08116 165 --------------GKEDENEIIRSL--------VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSL 222 (268)
T ss_pred --------------ccccHHHHHHHh--------cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence 000012233333 578999999997 34445567788999998888888889999999
Q ss_pred cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882 200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
++|...- -...+++|.+.|.+|.+.++ |||...
T Consensus 223 ~eL~~~~-----~~ri~sRl~e~~~~v~~~g~-d~R~~~ 255 (268)
T PRK08116 223 EELKNQY-----GKRIYDRILEMCTPVENEGK-SYRKEI 255 (268)
T ss_pred HHHHHHH-----hHHHHHHHHHcCEEEEeeCc-ChhHHH
Confidence 9975421 14567888889999999886 999854
No 359
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-11 Score=115.65 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=89.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
...+.-..|+||||||||||+.+|+|.-.-. ..++++.|...- ...+..+...+|. ..+..++.+++...
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a 105 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA 105 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence 3456778999999999999999999964311 234566665421 1122222222332 12223333333211
Q ss_pred ccCC-------CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882 111 ITNL-------PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 111 ~~~~-------~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... .......++.++.+++....-. ..+-..++++. +.++.+|++.+||||. ++|+.+-.
T Consensus 106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~----R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk 181 (251)
T COG0396 106 MNARRGARGILPEFIKELKEKAELLGLDEEFLE----RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK 181 (251)
T ss_pred HHhhhccccccHHHHHHHHHHHHHcCCCHHHhh----cccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHH
Confidence 1110 0111333444444444321000 00011122221 4667899999999999 99999999
Q ss_pred HHHHHHHHHHhCCc-EEEEecCC
Q 012882 176 ALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.+.++.+.+.|. ++++||+.
T Consensus 182 ~V~~~i~~lr~~~~~~liITHy~ 204 (251)
T COG0396 182 IVAEGINALREEGRGVLIITHYQ 204 (251)
T ss_pred HHHHHHHHHhcCCCeEEEEecHH
Confidence 99999999999988 99999974
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=9.8e-12 Score=112.33 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=46.6
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCCCccchhcCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNRAPWDLNQDG 206 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~P~dLy~~~ 206 (454)
|.|+..|+++++|||+ ++|+.-+..|..+++.|.. .|. ++|+||+.....|..++
T Consensus 164 RnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~r 221 (258)
T COG4107 164 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADR 221 (258)
T ss_pred HHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhc
Confidence 5667999999999999 8999999999999999975 477 99999997666655554
No 361
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.28 E-value=6.1e-12 Score=149.75 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=112.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+|++|||||||+++|.+..++ ..|...+...+. ..++++.++.++|+ ..-..|+++|+-.. .
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~ 1384 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINES-AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--S 1384 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccC-CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--c
Confidence 3457788999999999999999999999874 244444433221 24678888999888 23345888888311 1
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..+.+...+.+...++...- +.+..+..-...+++++ |||+++|+||+||||| .+|..+...+.+.
T Consensus 1385 -~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~ 1463 (1522)
T TIGR00957 1385 -QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST 1463 (1522)
T ss_pred -CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 23344444455554443210 11111111112344444 7899999999999999 8999999999999
Q ss_pred HHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 181 VSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
|++.++..++|++||+ ++.+...-+|+.|+.|
T Consensus 1464 l~~~~~~~TvI~IAHR-------------------l~ti~~~DrIlVld~G 1495 (1522)
T TIGR00957 1464 IRTQFEDCTVLTIAHR-------------------LNTIMDYTRVIVLDKG 1495 (1522)
T ss_pred HHHHcCCCEEEEEecC-------------------HHHHHhCCEEEEEECC
Confidence 9988765459999986 3445555666666654
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=99.28 E-value=2.6e-11 Score=134.33 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=44.2
Q ss_pred HHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 144 ADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 144 a~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
...+++++ ++|+.+|+||+||||+ +||+.....|.++|..+ .+.+||+||++.
T Consensus 342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~ 402 (718)
T PLN03073 342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHARE 402 (718)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 34556554 6889999999999999 89999999999999886 345999999964
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.28 E-value=8e-12 Score=148.44 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=103.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+|++|||||||+++|++..+ ..|...+...+. ...+++.+.+++|+ ..-..|+++|+-. ..
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp--~~ 1316 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDP--YE 1316 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCc--cc
Confidence 345778899999999999999999999885 244444333221 24577888888887 2334588888821 11
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
..+.+.....+...++...- +.+..+..-...+++++ |||+++|+|||||||| .+|..+...+.+.
T Consensus 1317 -~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~ 1395 (1490)
T TIGR01271 1317 -QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT 1395 (1490)
T ss_pred -CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 23445555566655553311 11111111112344444 7899999999999999 8999999999999
Q ss_pred HHHHHhCCcEEEEecC
Q 012882 181 VSRLLSTGTVLVATSN 196 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN 196 (454)
|+..++..+||++||+
T Consensus 1396 L~~~~~~~TvI~IaHR 1411 (1490)
T TIGR01271 1396 LKQSFSNCTVILSEHR 1411 (1490)
T ss_pred HHHHcCCCEEEEEecC
Confidence 9988765459999986
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.28 E-value=9.5e-12 Score=148.08 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=103.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-++|+|++|||||||+++|.+..++. .|...+...+. ..++++.+++++|+ ..-..|+++|+-. ..
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp--~~ 1408 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC-GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP--FL 1408 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc--cc
Confidence 34577889999999999999999999998742 44444433221 24677888888888 2334588888832 11
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccC-CcEEEeeCCC-CCCHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRG-ASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~-p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
..+.+.+...+...++...- +.+..+..-...+++++ |||+++ |+||||||+| .+|..+...+.+
T Consensus 1409 -~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~ 1487 (1560)
T PTZ00243 1409 -EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA 1487 (1560)
T ss_pred -CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 23344455555555543311 01111111112345554 788885 8999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecC
Q 012882 180 IVSRLLSTGTVLVATSN 196 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN 196 (454)
.|...++..++|++||+
T Consensus 1488 ~L~~~~~~~TvI~IAHR 1504 (1560)
T PTZ00243 1488 TVMSAFSAYTVITIAHR 1504 (1560)
T ss_pred HHHHHCCCCEEEEEecc
Confidence 99988765559999987
No 365
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.27 E-value=8.5e-12 Score=140.57 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=98.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-+.|+||+||||||++.+|.+...| ..|...+..++. ..+++..++.+.|+ ..-..|+.||+......
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD 453 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc
Confidence 3467888999999999999999999998875 355555544332 23566777877777 44556788887333211
Q ss_pred CCCChHHHHHHHHHHhhhh---HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQ---EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~---~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
......++.+.....+. .. +.+-...+-.-.|++++ |||+++|+||+|||+| .||..+...+.+.
T Consensus 454 --at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~A 531 (1228)
T KOG0055|consen 454 --ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEA 531 (1228)
T ss_pred --ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHH
Confidence 11222222221111110 00 00000000011244444 7889999999999999 8999999999999
Q ss_pred HHHHHhCCcEEEEecC
Q 012882 181 VSRLLSTGTVLVATSN 196 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN 196 (454)
|+......+.||++|.
T Consensus 532 Ld~~~~grTTivVaHR 547 (1228)
T KOG0055|consen 532 LDKASKGRTTIVVAHR 547 (1228)
T ss_pred HHHhhcCCeEEEEeee
Confidence 9888654459999986
No 366
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=7.3e-12 Score=129.19 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=39.8
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
|||..+|+||+||||| .||+.+..+|...|.... .++||++|++..
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~F 257 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNF 257 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHH
Confidence 6888999999999999 799999999988777753 469999999853
No 367
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.3e-11 Score=117.83 Aligned_cols=146 Identities=24% Similarity=0.315 Sum_probs=101.3
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
+..+||||.||||+|+|||+|.++.++.+.. .-.++...++.+ +-++.-..
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tFIrvvgSElVq---KYiGEGaR----------------------- 231 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TFIRVVGSELVQ---KYIGEGAR----------------------- 231 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eEEEeccHHHHH---HHhccchH-----------------------
Confidence 5678999999999999999999999998753 234555544432 22221100
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHH--H
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRL--L 185 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L--~ 185 (454)
.-.-+..+|++ +.|.|+++||.. +-|..-+..+.+||.+| |
T Consensus 232 -----------------lVRelF~lAre---------kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 232 -----------------LVRELFELARE---------KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred -----------------HHHHHHHHHhh---------cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 00112445665 679999999995 34556667777777777 2
Q ss_pred h-CC-cEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhcc
Q 012882 186 S-TG-TVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLIA 239 (454)
Q Consensus 186 ~-~G-~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~~ 239 (454)
+ +| +-+|+..||+ |+-|.+++++|..-.| -..+|+-|+.-+.+..++||.....
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence 2 23 4344445875 8889999999965443 4678999999999999999987643
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.24 E-value=1.2e-11 Score=116.26 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=36.8
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+|++|+||||+ ++|+.....+.++|.++.+...||++||+.
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~ 176 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRK 176 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 567999999999 899999999999999997643499999984
No 369
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.24 E-value=5.3e-12 Score=120.08 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882 157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN 196 (454)
Q Consensus 157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN 196 (454)
.|++|+||||+ ++|+.....+.+++.++.+.+.++++||+
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~ 189 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR 189 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 57999999999 89999999999999998665668888876
No 370
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.24 E-value=1.7e-11 Score=113.47 Aligned_cols=132 Identities=19% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 120 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~ 120 (454)
..++|++|+|++|+|||+|+.++...+- ..+..+.|-... ++...+.....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~~v~f~~~~-~L~~~l~~~~~------------------------- 95 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAI---RKGYSVLFITAS-DLLDELKQSRS------------------------- 95 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEHH-HHHHHHHCCHC-------------------------
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhc---cCCcceeEeecC-ceecccccccc-------------------------
Confidence 3579999999999999999999987552 234455554332 22222221100
Q ss_pred HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
........+.+ .+++||+|||+. ..+......|.+++....+++ .+|+|||..
T Consensus 96 ----------------~~~~~~~~~~l--------~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 96 ----------------DGSYEELLKRL--------KRVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp ----------------CTTHCHHHHHH--------HTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ----------------ccchhhhcCcc--------ccccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 00112233333 479999999999 367778888999999988754 677799999
Q ss_pred ccchhcCCchhhhhHHHHHHHHhhcccc
Q 012882 199 PWDLNQDGMQREIFQKLVAKLEKHCEII 226 (454)
Q Consensus 199 P~dLy~~~l~r~~F~~~I~~L~~~~~vv 226 (454)
|++|..---++..-.+.+++|.++|++|
T Consensus 151 ~~~l~~~~~d~~~a~aildRl~~~~~~i 178 (178)
T PF01695_consen 151 PSELEEVLGDRALAEAILDRLLHHCHVI 178 (178)
T ss_dssp HHHHHT----------------------
T ss_pred hhhHhhccccccccccccccccccccCC
Confidence 9999886666777778899999999986
No 371
>PLN03232 ABC transporter C family member; Provisional
Probab=99.23 E-value=1.1e-11 Score=147.38 Aligned_cols=146 Identities=15% Similarity=0.130 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
.++++-+.|+|++|||||||+++|.|..++. .|+. + .++..+.++.|+ ...+.|+++|+.... +.+.
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~G~i-~-------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~---~~~~ 707 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHA-ETSS-V-------VIRGSVAYVPQVSWIFNATVRENILFGS---DFES 707 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCccc-CCCE-E-------EecCcEEEEcCccccccccHHHHhhcCC---ccCH
Confidence 3456779999999999999999999999752 3322 2 123456777776 234568999984322 3466
Q ss_pred HHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHH
Q 012882 119 KVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL-SGIVSRL 184 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L 184 (454)
+..++++...++..... .+..+..-...+++++ ||++++|+||+||||+ .+|..++..+ .+++..+
T Consensus 708 e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~ 787 (1495)
T PLN03232 708 ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787 (1495)
T ss_pred HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence 66777776666543211 0111122223456665 7999999999999999 8999987755 5566665
Q ss_pred HhCCcEEEEecCC
Q 012882 185 LSTGTVLVATSNR 197 (454)
Q Consensus 185 ~~~G~vlV~ThN~ 197 (454)
.+..++|++||+.
T Consensus 788 l~~kT~IlvTH~~ 800 (1495)
T PLN03232 788 LKGKTRVLVTNQL 800 (1495)
T ss_pred hcCCEEEEEECCh
Confidence 4433499999984
No 372
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.22 E-value=2.2e-11 Score=144.74 Aligned_cols=145 Identities=18% Similarity=0.212 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccCCCCChH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
++++-++|+||||||||||+++|+|..++ ..| .+.+++ .+.++.|+. ....|+.+|+.... .++..
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-~~G--~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~---~~~~~ 516 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEG--KIKHSG-------RISFSPQTSWIMPGTIKDNIIFGL---SYDEY 516 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECC-------EEEEEeCCCccCCccHHHHHHhcc---ccchH
Confidence 45667999999999999999999999874 233 444432 356666651 12348888873221 12333
Q ss_pred HHHHHHHHHhhhhHHhh---cc--hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH-HHHHHH
Q 012882 120 VMEWVAAEEKYKQEVQM---KN--ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG-IVSRLL 185 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~---~~--~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~-ll~~L~ 185 (454)
..+.++...++...... .+ .+..-...+++++ ||++.+|++|+||||+ ++|...+..+.+ ++..+.
T Consensus 517 ~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~ 596 (1490)
T TIGR01271 517 RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM 596 (1490)
T ss_pred HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 33444443333221100 00 0111123455554 7889999999999999 899999999987 466665
Q ss_pred hCCcEEEEecCCC
Q 012882 186 STGTVLVATSNRA 198 (454)
Q Consensus 186 ~~G~vlV~ThN~~ 198 (454)
+..++|++||+..
T Consensus 597 ~~~tvilvtH~~~ 609 (1490)
T TIGR01271 597 SNKTRILVTSKLE 609 (1490)
T ss_pred cCCeEEEEeCChH
Confidence 4334999999853
No 373
>PRK12377 putative replication protein; Provisional
Probab=99.22 E-value=8.3e-11 Score=114.31 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 122 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e 122 (454)
..+++|+|++|+|||+|+.+++..+. ..+..+.|.... ++...+......
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~-~l~~~l~~~~~~-------------------------- 150 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP-DVMSRLHESYDN-------------------------- 150 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH-HHHHHHHHHHhc--------------------------
Confidence 47899999999999999999998764 122344443322 222222111000
Q ss_pred HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 012882 123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPW 200 (454)
Q Consensus 123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~ 200 (454)
......+.+.+ .+++|||+||+. .........|..++......+..+|+|||..++
T Consensus 151 --------------~~~~~~~l~~l--------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~ 208 (248)
T PRK12377 151 --------------GQSGEKFLQEL--------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHE 208 (248)
T ss_pred --------------cchHHHHHHHh--------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHH
Confidence 00011223333 579999999996 455567889999999988877888889999999
Q ss_pred chhcCCchhhhhHHHHHHHHhh-ccccccCCchhhhhhc
Q 012882 201 DLNQDGMQREIFQKLVAKLEKH-CEIIPIGSEVDYRRLI 238 (454)
Q Consensus 201 dLy~~~l~r~~F~~~I~~L~~~-~~vv~l~~~~DyR~~~ 238 (454)
+|...- -.+.+++|.+. |.+|.++++ |||+..
T Consensus 209 ~l~~~~-----~~ri~dRl~~~~~~~v~~~g~-s~R~~~ 241 (248)
T PRK12377 209 AMSTLL-----GERVMDRMTMNGGRWVNFNWE-SWRPNV 241 (248)
T ss_pred HHHHHh-----hHHHHHHHhhCCCeEEEeCCc-Cccccc
Confidence 986521 13478889765 788999997 999853
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1e-10 Score=105.43 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=88.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----------HH-HHHHHHHHhhhh--hcccchh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----------LK-INEHMHRLWKNQ--VAEKSLR 104 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----------~~-~~~~i~~~~~~~--~~~~t~~ 104 (454)
....+.++.|.||+|+||||||+++|+...+ ..++..+.-.+-. .. -++.++++.|-+ .+..+..
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~-d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL 111 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLP-DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL 111 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhccCC-CCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence 3467899999999999999999999998764 2455544322211 11 234566665531 1111211
Q ss_pred hhhhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHH-HHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 105 SSISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVA-DKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 105 e~l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va-~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
+.+..-+.....+. ..+..++..+.+.. .+-.++ ..++++. |.++.+.+||+||||| .||.
T Consensus 112 dVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe------rLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa 185 (235)
T COG4778 112 DVVAEPLLARGVPREVARAKAADLLTRLNLPE------RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185 (235)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH------HHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccc
Confidence 21111110011111 12222222222211 111111 0112221 5777899999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 172 FAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
.++..+.+++.+-+.+|. ++=+-|+..
T Consensus 186 ~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 186 TNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred cchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 999999999999999999 777778753
No 375
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2e-10 Score=116.36 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc---cCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882 37 PTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV---KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN 113 (454)
Q Consensus 37 ~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~---~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~ 113 (454)
...+..-.-++|+||||.|||||+++|.|.+.|.- ....|.+..-|-+.....+ ....|..+++. ..+.
T Consensus 607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L-------~~Eetp~EyLq-r~FN 678 (807)
T KOG0066|consen 607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEAL-------NGEETPVEYLQ-RKFN 678 (807)
T ss_pred cccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhh-------ccccCHHHHHH-HhcC
Confidence 34555667799999999999999999999886531 1223444333322211111 11112223321 1111
Q ss_pred CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh---hh----hccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ---HA----DQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL 185 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~---rA----L~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~ 185 (454)
.+-..++..++.+++......- -.+.+++++ .| -+..|+|||||||| .||+.+...|.+.|+++
T Consensus 679 --lpyq~ARK~LG~fGL~sHAHTi-----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney- 750 (807)
T KOG0066|consen 679 --LPYQEARKQLGTFGLASHAHTI-----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY- 750 (807)
T ss_pred --CChHHHHHHhhhhhhhhccceE-----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc-
Confidence 1223445556666653311000 011112221 00 13689999999999 89999999999998887
Q ss_pred hCCcEEEEecCC
Q 012882 186 STGTVLVATSNR 197 (454)
Q Consensus 186 ~~G~vlV~ThN~ 197 (454)
.|.|||+||+-
T Consensus 751 -~GgVi~VsHDe 761 (807)
T KOG0066|consen 751 -NGGVIMVSHDE 761 (807)
T ss_pred -cCcEEEEeccc
Confidence 67899999983
No 376
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.20 E-value=3.4e-11 Score=143.51 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=93.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
.++++-++|+||||||||||+++|.|.+++ .. +.+.+++ .+++++|+ .....|+.+|+.... ..+.
T Consensus 661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~~--G~i~~~g-------~i~yv~Q~~~l~~~Ti~eNI~~g~---~~~~ 727 (1522)
T TIGR00957 661 IPEGALVAVVGQVGCGKSSLLSALLAEMDK-VE--GHVHMKG-------SVAYVPQQAWIQNDSLRENILFGK---ALNE 727 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcc-CC--cEEEECC-------EEEEEcCCccccCCcHHHHhhcCC---ccCH
Confidence 345677999999999999999999999874 23 3444432 35666665 223468888874221 1334
Q ss_pred HHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH-
Q 012882 119 KVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL- 184 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L- 184 (454)
+..+.++....+...... ...+..-...+++++ ||++.+|++++||||+ ++|...+..+.+.+...
T Consensus 728 ~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~ 807 (1522)
T TIGR00957 728 KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807 (1522)
T ss_pred HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence 444444444333221110 001112223455554 7889999999999999 89999999988877543
Q ss_pred -HhCCc-EEEEecCCC
Q 012882 185 -LSTGT-VLVATSNRA 198 (454)
Q Consensus 185 -~~~G~-vlV~ThN~~ 198 (454)
..+|+ +|++||+..
T Consensus 808 ~~~~~~tvIlvTH~~~ 823 (1522)
T TIGR00957 808 GVLKNKTRILVTHGIS 823 (1522)
T ss_pred hhhcCCEEEEEeCChh
Confidence 12344 999999853
No 377
>PLN03130 ABC transporter C family member; Provisional
Probab=99.20 E-value=2.4e-11 Score=144.97 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=99.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
.++++-++|+||+|||||||+++|.|..++. . ++.+. ++..+.++.|+ ...+.|+++|+... .+++.
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~-GG~I~-------l~~~Iayv~Q~p~LfngTIreNI~fg---~~~d~ 707 (1622)
T PLN03130 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPR-S-DASVV-------IRGTVAYVPQVSWIFNATVRDNILFG---SPFDP 707 (1622)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHhhccC-C-CceEE-------EcCeEEEEcCccccCCCCHHHHHhCC---CcccH
Confidence 3456679999999999999999999999742 3 13443 23457777777 23456899998432 23456
Q ss_pred HHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHH
Q 012882 119 KVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL-SGIVSRL 184 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L 184 (454)
+..++++...++..... ....+..-...+++++ ||++++|+||+||||+ .+|...+..+ .+++..+
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 67777777776644211 1111222223456655 7999999999999999 8999887654 5667665
Q ss_pred HhCCcEEEEecCC
Q 012882 185 LSTGTVLVATSNR 197 (454)
Q Consensus 185 ~~~G~vlV~ThN~ 197 (454)
.+..++|++||+.
T Consensus 788 l~~kTvIlVTH~l 800 (1622)
T PLN03130 788 LRGKTRVLVTNQL 800 (1622)
T ss_pred hcCCEEEEEECCH
Confidence 4433499999984
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.19 E-value=2.4e-11 Score=118.41 Aligned_cols=40 Identities=15% Similarity=0.377 Sum_probs=35.9
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
.+|++|++|||+ ++|+.....+.++|.++.+ |. +|++||+
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~ 228 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLK 228 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 578999999999 8999999999999999864 66 8888887
No 379
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.19 E-value=9.8e-12 Score=120.18 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=34.1
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.+|++|+||||+ ++|+..+..+.+.|.++.+ +.++|+||+.
T Consensus 179 ~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~ 220 (243)
T cd03272 179 DPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR 220 (243)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 468999999999 8999999999999999865 6755555554
No 380
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.19 E-value=3.5e-11 Score=121.17 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhHH--HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAML--KINEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~~--~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
...++.-+.|+|++|||||..+..+.+.+|.+ ....++++|++--. .-.+.+..++.. -..++||.+...
T Consensus 32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~------~I~MIFQEPMtS 105 (534)
T COG4172 32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGN------KIGMIFQEPMTS 105 (534)
T ss_pred eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhccc------ceEEEecccccc
Confidence 45678889999999999999999999998742 23446777765321 111222222211 012334443322
Q ss_pred CCCh-HHHHHHHHHHhhhhHH-------------------hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 115 PFDS-KVMEWVAAEEKYKQEV-------------------QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 115 ~~~~-~~~e~ll~~~~l~~~~-------------------~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
..+. +.-+.+.+.+.++... .....+...-.++++++ .||+.+|++||-||||
T Consensus 106 LNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPT 185 (534)
T COG4172 106 LNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPT 185 (534)
T ss_pred cCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCc
Confidence 2221 2222333333332210 01122333444566665 5899999999999999
Q ss_pred -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.||+.-+..+.++|+.|.++ |. ++++|||.
T Consensus 186 TALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 186 TALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred chhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 89999999999999999865 77 99999995
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.18 E-value=4.5e-11 Score=112.66 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=34.9
Q ss_pred CCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882 157 GASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 157 ~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+|++|++|||+ ++|+.++..+ ..++..+.+.|. +|++||+.
T Consensus 105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~ 148 (199)
T cd03283 105 EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDL 148 (199)
T ss_pred CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence 89999999999 8999988765 557888877777 88999984
No 382
>PTZ00243 ABC transporter; Provisional
Probab=99.18 E-value=5.8e-11 Score=141.50 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=87.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
++++-++|+||||||||||+++|.|.+++. .| .+..+ ..+++++|+ .....|+.+++... ...+..
T Consensus 684 ~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~-~G--~i~~~-------~~i~yv~Q~~~l~~~Tv~enI~~~---~~~~~~ 750 (1560)
T PTZ00243 684 PRGKLTVVLGATGSGKSTLLQSLLSQFEIS-EG--RVWAE-------RSIAYVPQQAWIMNATVRGNILFF---DEEDAA 750 (1560)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCC-Cc--EEEEC-------CeEEEEeCCCccCCCcHHHHHHcC---ChhhHH
Confidence 456679999999999999999999998742 33 44332 345666665 12245777777321 112222
Q ss_pred HHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH-HHHHHH
Q 012882 120 VMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG-IVSRLL 185 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~-ll~~L~ 185 (454)
..+..+...++.... +....+......|++++ ||++.+|+||+||||+ ++|+..+..+.+ ++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 333333332222110 00011111123345554 7899999999999999 899988776654 444433
Q ss_pred hCCc-EEEEecCCC
Q 012882 186 STGT-VLVATSNRA 198 (454)
Q Consensus 186 ~~G~-vlV~ThN~~ 198 (454)
.|+ +|++||+..
T Consensus 831 -~~~TvIlvTH~~~ 843 (1560)
T PTZ00243 831 -AGKTRVLATHQVH 843 (1560)
T ss_pred -CCCEEEEEeCCHH
Confidence 455 999999853
No 383
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.18 E-value=1.6e-10 Score=116.81 Aligned_cols=139 Identities=19% Similarity=0.285 Sum_probs=95.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 122 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e 122 (454)
.++++|+|++|+|||+|+.+++..+- ..+..|.|.... ++...+.......
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~-~l~~~l~~~~~~~------------------------- 233 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTAD-ELIEILREIRFNN------------------------- 233 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHH-HHHHHHHHHHhcc-------------------------
Confidence 48999999999999999999998763 233456554332 2222221110000
Q ss_pred HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 012882 123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPW 200 (454)
Q Consensus 123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~ 200 (454)
..+ .....+.+ .+++|||+|++. ..+......|..+|......+..+|+|+|.+|+
T Consensus 234 -------------~~~-~~~~~~~l--------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~ 291 (329)
T PRK06835 234 -------------DKE-LEEVYDLL--------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLE 291 (329)
T ss_pred -------------chh-HHHHHHHh--------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
Confidence 000 01112222 579999999998 477778889999999998888888889999999
Q ss_pred chhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882 201 DLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 201 dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
+|...- =.+..++|...|.++.+.|. |+|...
T Consensus 292 el~~~~-----~eri~SRL~~~~~~i~~~G~-d~R~~~ 323 (329)
T PRK06835 292 ELLKTY-----SERISSRLLGNFTLLKFYGE-DIRIKK 323 (329)
T ss_pred HHHHHH-----hHHHHHHHHcCCEEEEecCc-ChhhHH
Confidence 985421 02457889999999999765 999754
No 384
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.17 E-value=7.5e-11 Score=133.11 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=104.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN 113 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~ 113 (454)
..++++-+.|+||+||||||++.+|-....| ..|+..+...+. ...+++.++.+.|+ ..-+.|++||+..+...
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDP-DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 3467889999999999999999999777654 345555544332 24678888888887 34566888988444212
Q ss_pred CCCChHHHHHHHHHHhhhh---H--HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQ---E--VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~---~--~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
.++..+.+.+.....+. . .+.+-.+.+-..+|++++ ||++++|+||+|||-| .||..+.+.+.+.
T Consensus 1091 --vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1091 --VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred --CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHH
Confidence 34433333333222222 1 111112222233455554 7899999999999999 7999999999999
Q ss_pred HHHHHhCCcEEEEecC
Q 012882 181 VSRLLSTGTVLVATSN 196 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN 196 (454)
|++.....+.||++|-
T Consensus 1169 Ld~a~~gRT~IvIAHR 1184 (1228)
T KOG0055|consen 1169 LDRAMEGRTTIVIAHR 1184 (1228)
T ss_pred HHHhhcCCcEEEEecc
Confidence 9998765458999985
No 385
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.14 E-value=5.8e-11 Score=112.27 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=40.4
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHH-HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIV-ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~-~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
++++.+|++|+||||+ ++|+..+. .+.+++.++.+. |. +|++||+.
T Consensus 134 ~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 134 ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred HHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 4566899999999999 89999999 999999999875 65 89999974
No 386
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.14 E-value=1.1e-10 Score=112.22 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=41.4
Q ss_pred hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+| ++|+||||+ ++|+..+..+.++|.++.++|. +|++||+.
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~ 199 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH
Confidence 5777887 599999999 8999999999999999987777 99999985
No 387
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.11 E-value=7.2e-10 Score=108.33 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech---hHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE---AMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~---f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
.+++++|+||+|+|||+|+-+|+..+. ..+.++.|.. ++..+......
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~~el~~~Lk~~~~~-------------------------- 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITAPDLLSKLKAAFDE-------------------------- 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHhc--------------------------
Confidence 578999999999999999999988773 2345665543 33322221111
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSN 196 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN 196 (454)
......+.+.+ .+++||||||.. ..+...+..+.++|......... ++|||
T Consensus 155 ------------------~~~~~~l~~~l--------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN 207 (254)
T COG1484 155 ------------------GRLEEKLLREL--------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSN 207 (254)
T ss_pred ------------------CchHHHHHHHh--------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecC
Confidence 00112334434 579999999999 48888888888888888776556 99999
Q ss_pred CCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882 197 RAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 197 ~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.++++|....-....-...+++|.++|+++.+.++ +||...
T Consensus 208 ~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~g~-s~rl~~ 248 (254)
T COG1484 208 LSFGEWDELFGDDALTEALLDRILHHSHVIVIKGE-SYRLNV 248 (254)
T ss_pred CChHHHHhhccCchhHHHHHHHHHhcceeeEecch-Hhhhhc
Confidence 99999887554444556788999999999998776 899743
No 388
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.11 E-value=5.4e-11 Score=104.46 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
.++.-++|+|+||||||||+++|+|..++ ..+.+.+++. .......+.++.+. .....++.++
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~------ 79 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN------ 79 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH------
T ss_pred cCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccccc------
Confidence 35678999999999999999999999863 3456655432 12233344444433 2223333333
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ 167 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~ 167 (454)
......+.++..+++.... ...+..-...+++++ +||+.+|++|+||||+
T Consensus 80 ---~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 80 ---ESDERIEEVLKKLGLEDLL--DRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp ---HHHHHHHHHHHHTTHGGGT--GSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ---ccccccccccccccccccc--ccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 1123455555555553311 011111113333333 6788999999999997
No 389
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.09 E-value=4e-10 Score=106.06 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=35.5
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHH-HHHHHHHhCCc-EEEEecC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALS-GIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~-~ll~~L~~~G~-vlV~ThN 196 (454)
.+|+++++|||+ ++|+.....+. .+++.+.+.|. ++++||+
T Consensus 107 ~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 689999999999 89999988885 57888877777 8888886
No 390
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.09 E-value=6.4e-10 Score=101.43 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=87.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhhhcc----cchhhhhh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQVAE----KSLRSSIS 108 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~~~~----~t~~e~l~ 108 (454)
....++-++++|.||||||||.++++|.++|. .+ ++.|++.. ..-.+.+..+.|..... +.+...+
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT-sG--~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL- 110 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SG--EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL- 110 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCC-Cc--eEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh-
Confidence 34567889999999999999999999999863 44 44444321 11223444444432211 1111111
Q ss_pred ccccC--CCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhh-------hhhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 109 GWITN--LPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVD-------QHADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 109 ~~~~~--~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~-------~rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
..+.. ..++ +.+.+.+...+++-+..+. -.......++.+ .|||+-+|+|+|.||.- +||.+-+..+
T Consensus 111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd--han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl 188 (267)
T COG4167 111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPD--HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188 (267)
T ss_pred cchhhhcccCChHHHHHHHHHHHHHhccCcc--ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHH
Confidence 11111 1112 2344444444433221110 000001111111 16788999999999999 7999999999
Q ss_pred HHHHHHHHhC-Cc-EEEEecC
Q 012882 178 SGIVSRLLST-GT-VLVATSN 196 (454)
Q Consensus 178 ~~ll~~L~~~-G~-vlV~ThN 196 (454)
.+++-+|.++ |+ .|.++.+
T Consensus 189 ~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 189 INLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHHHHHhCceEEEEech
Confidence 9999999875 87 7777766
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.09 E-value=5.7e-10 Score=108.51 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=39.2
Q ss_pred hhhcc----CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 152 HADQR----GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 152 rAL~~----~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
++++. .|++++||||+ ++|+..+..+.++|.++.+.|. +|++||+
T Consensus 168 ~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 168 LLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred HHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 45554 48999999999 8999999999999999987676 9999997
No 392
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.3e-10 Score=107.83 Aligned_cols=122 Identities=29% Similarity=0.321 Sum_probs=83.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
+..+|+|+.+|||+|||||||.++.++... ..-.|+...+|.+. .++.-+.
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~---a~firvvgsefvqk---ylgegpr----------------------- 235 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEFVQK---YLGEGPR----------------------- 235 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccc---hheeeeccHHHHHH---HhccCcH-----------------------
Confidence 467899999999999999999999998774 34467777776542 2221110
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHH--H
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRL--L 185 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L--~ 185 (454)
+-.-+.++|++ ..|.|+++||.. +-|..-+.+|.++++.+ +
T Consensus 236 -----------------mvrdvfrlake---------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgf 289 (408)
T KOG0727|consen 236 -----------------MVRDVFRLAKE---------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF 289 (408)
T ss_pred -----------------HHHHHHHHHhc---------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCc
Confidence 00112445665 459999999973 56777778888888777 3
Q ss_pred hC--Cc-EEEEecCCC----ccchhcCCchhhhhHHHH
Q 012882 186 ST--GT-VLVATSNRA----PWDLNQDGMQREIFQKLV 216 (454)
Q Consensus 186 ~~--G~-vlV~ThN~~----P~dLy~~~l~r~~F~~~I 216 (454)
++ ++ ||++| ||. |+-|.++++.|+.-.|.-
T Consensus 290 dq~~nvkvimat-nradtldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 290 DQTTNVKVIMAT-NRADTLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred CcccceEEEEec-CcccccCHhhcCCccccccccCCCC
Confidence 33 34 55555 654 888888888887655543
No 393
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.07 E-value=1.3e-09 Score=105.75 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 122 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e 122 (454)
..|++|+|++|+|||+|+.+++..+. ..+..+.+-... ++...+......
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~~-~l~~~l~~~~~~-------------------------- 148 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITVA-DIMSAMKDTFSN-------------------------- 148 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEHH-HHHHHHHHHHhh--------------------------
Confidence 36999999999999999999998763 223444443221 111111110000
Q ss_pred HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 012882 123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPW 200 (454)
Q Consensus 123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~ 200 (454)
.......+.+.+ .+++|||+||+. ..+......|..++......+..+|+|||..++
T Consensus 149 -------------~~~~~~~~l~~l--------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 149 -------------SETSEEQLLNDL--------SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred -------------ccccHHHHHHHh--------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 000012233333 479999999998 334445668888998877767788889999999
Q ss_pred chhcCCchhhhhHHHHHHHH-hhccccccCCchhhhhh
Q 012882 201 DLNQDGMQREIFQKLVAKLE-KHCEIIPIGSEVDYRRL 237 (454)
Q Consensus 201 dLy~~~l~r~~F~~~I~~L~-~~~~vv~l~~~~DyR~~ 237 (454)
+|...-- -..+++|. +++.++.++++ +||..
T Consensus 208 ~l~~~~g-----~ri~sRl~~~~~~~i~f~~~-s~R~~ 239 (244)
T PRK07952 208 EMTKLLG-----ERVMDRMRLGNSLWVIFNWD-SYRSR 239 (244)
T ss_pred HHHHHhC-----hHHHHHHHHCCceEEEeeCC-ccccc
Confidence 9875221 24578885 78899999976 89973
No 394
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.07 E-value=3.3e-10 Score=118.70 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=103.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccC-----ceEEEechhHHHHHHHHHHHhhhh-----hcccchhhhhhc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKH-----RQRFHFHEAMLKINEHMHRLWKNQ-----VAEKSLRSSISG 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~-----k~rv~f~~f~~~~~~~i~~~~~~~-----~~~~t~~e~l~~ 109 (454)
...+.-++|.|-.|+|+|-|+.+|+|..+. ..+ +..+++......+...+.+++.++ ...+++.+|+..
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l 360 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFGARPA-SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITL 360 (500)
T ss_pred EeCCcEEEEeccccCCHHHHHHHHhCCCcC-CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheeh
Confidence 356778999999999999999999996542 122 334455555556777788887653 344677777622
Q ss_pred c-ccCC----CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 110 W-ITNL----PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 110 ~-~~~~----~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
. +... ..+. ..++.....++++... ....+..|+++. +.|..+|+||+||||| +.|+.
T Consensus 361 ~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-----~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVG 435 (500)
T COG1129 361 ASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-----PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVG 435 (500)
T ss_pred HhhhhhccccccChHHHHHHHHHHHHhcCcccCC-----ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccc
Confidence 1 1111 1222 2333444444443211 123344555553 6778999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 173 AIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+...+++++++|.++|+ ||++||+.
T Consensus 436 AK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 436 AKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 99999999999999999 99999885
No 395
>PRK06921 hypothetical protein; Provisional
Probab=99.05 E-value=2.2e-09 Score=105.66 Aligned_cols=134 Identities=15% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 121 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 121 (454)
...+++|+|++|+|||+|+.+|+..+.. ..+..+.|-.... . +..+....
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~~~-l---~~~l~~~~------------------------ 165 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPFVE-G---FGDLKDDF------------------------ 165 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEHHH-H---HHHHHHHH------------------------
Confidence 4688999999999999999999987641 2134444433211 1 11111000
Q ss_pred HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-------CCHHHHHHHHHHHHHHHhCCcEEEEe
Q 012882 122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-------VDVFAIVALSGIVSRLLSTGTVLVAT 194 (454)
Q Consensus 122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-------lD~~~a~~L~~ll~~L~~~G~vlV~T 194 (454)
+......+.+ .+++|||+||.+. ........|..++......+..+|+|
T Consensus 166 ----------------~~~~~~~~~~--------~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIit 221 (266)
T PRK06921 166 ----------------DLLEAKLNRM--------KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILIS 221 (266)
T ss_pred ----------------HHHHHHHHHh--------cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 0001112222 5799999999941 33445567889999888877877889
Q ss_pred cCCCccchhcCCchhhhhHHHHHHHHhhcc--ccccCCchhhhh
Q 012882 195 SNRAPWDLNQDGMQREIFQKLVAKLEKHCE--IIPIGSEVDYRR 236 (454)
Q Consensus 195 hN~~P~dLy~~~l~r~~F~~~I~~L~~~~~--vv~l~~~~DyR~ 236 (454)
+|.+|++|..- .. ...++|.++|. ++.+++. .||.
T Consensus 222 sn~~~~el~~~--~~----~l~sRi~~r~~~~~i~~~g~-s~r~ 258 (266)
T PRK06921 222 SELTIDELLDI--DE----ALGSRIVEMCKDYLVIIKGD-SFEL 258 (266)
T ss_pred CCCCHHHHhhh--hh----HHHHHHHHhccCeEEEecCc-cccc
Confidence 99999998863 22 33455555554 7777664 4554
No 396
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.04 E-value=1e-09 Score=114.16 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 141 PAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 141 ~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
....+.++++. ++|..+|+||+||||+ +||+.+..+|.+.|..+-. +.++|++|..
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~~lVi~sh~Q 279 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-IILVIVSHSQ 279 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-ceEEEEecch
Confidence 33444555554 6889999999999999 8999999999988887633 2455566643
No 397
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.03 E-value=1.1e-09 Score=103.11 Aligned_cols=44 Identities=11% Similarity=0.298 Sum_probs=37.0
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC--C-c-EEEEecCCC
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST--G-T-VLVATSNRA 198 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~--G-~-vlV~ThN~~ 198 (454)
+.+|++|+||||+ ++|+..+..+.++|.++... | . ++++||+..
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 4899999999999 89999999999999998653 3 3 777778753
No 398
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.02 E-value=7.4e-10 Score=118.33 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=94.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccCCCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITNLPFD 117 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~~~ 117 (454)
..+++.-++|.|++|||||||+++|+|.=| -+.+++.+.. ...+-+++|.. .+..|.++.+..-.....++
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~-----~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~ 486 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPA-----DSALLFLPQRPYLPQGTLREALCYPNAAPDFS 486 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCC-----CCceEEecCCCCCCCccHHHHHhCCCCCCCCC
Confidence 446778899999999999999999999886 2445555441 11223445542 23335566553222222355
Q ss_pred hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882 118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT 189 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~ 189 (454)
.....+++...++......-+......+.++.+. |.|+++|+++||||-| .+|......+.+++++-. .++
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~ 565 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA 565 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence 6666677777776542221111222444555443 6788999999999999 899999999988887633 356
Q ss_pred EEEEecCC
Q 012882 190 VLVATSNR 197 (454)
Q Consensus 190 vlV~ThN~ 197 (454)
.+|...++
T Consensus 566 tvISV~Hr 573 (604)
T COG4178 566 TVISVGHR 573 (604)
T ss_pred EEEEeccc
Confidence 55555544
No 399
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.99 E-value=4.5e-09 Score=103.04 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=41.0
Q ss_pred hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+ |++++||||+ ++|+.+...+.++|.++.+.|. +|++|||.
T Consensus 182 raL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 182 KELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred HHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 466675 7999999999 8999999999999999988777 99999984
No 400
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.98 E-value=2.7e-09 Score=100.56 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=35.3
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.+|+++++|||+ ++|+.....+ ..++..+.+.|. +|++||+.
T Consensus 106 ~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 106 ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 3689999999999 8999887765 567787777777 88899874
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.97 E-value=2.4e-09 Score=109.47 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=52.7
Q ss_pred chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhc
Q 012882 138 NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQ 204 (454)
Q Consensus 138 ~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~ 204 (454)
+.+.+-...++++. .++.+++++.+||||+ -||+..+....+++++|.+.+. |||+-|+..--|+..
T Consensus 205 nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ls 280 (591)
T COG1245 205 NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLS 280 (591)
T ss_pred hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhh
Confidence 33444455556553 5778999999999999 6999999999999999998777 999999965444333
No 402
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.9e-09 Score=110.25 Aligned_cols=146 Identities=22% Similarity=0.307 Sum_probs=98.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
+..+|.||+|+||+|||||.|.++.++.... .-..|.+.+.+.. |+... +
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~---NFisVKGPELlNk------YVGES---------------------E 590 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGA---NFISVKGPELLNK------YVGES---------------------E 590 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhccC---ceEeecCHHHHHH------HhhhH---------------------H
Confidence 4567999999999999999999999987642 1223333332211 11100 0
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC--------CCHHHHHHHHHHHHHHH----h
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--------VDVFAIVALSGIVSRLL----S 186 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~--------lD~~~a~~L~~ll~~L~----~ 186 (454)
.. -..+.+-|+ ...|+|++|||+.. .-......+.+||.+|- +
T Consensus 591 rA----------------VR~vFqRAR---------~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 591 RA----------------VRQVFQRAR---------ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred HH----------------HHHHHHHhh---------cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 00 000111222 36799999999972 33456677888888873 3
Q ss_pred CCcEEEEecCCC----ccchhcCCchhhhhHHH------HHHHHhhcc--ccccCCchhhhhhcc
Q 012882 187 TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCE--IIPIGSEVDYRRLIA 239 (454)
Q Consensus 187 ~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~------I~~L~~~~~--vv~l~~~~DyR~~~~ 239 (454)
+|+.+|+..||| |+-|.++++.+-.|.++ +++|+...+ -..+++.+|+-....
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 477888888987 88899999999888764 567777666 777888889876543
No 403
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.94 E-value=5.6e-09 Score=98.77 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=35.3
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.+|+++++|||+ ++|+.+...+ ..+++.+.+.|. +|++||+.
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 4789999999999 8999776554 567888887787 99999975
No 404
>PRK06893 DNA replication initiation factor; Validated
Probab=98.94 E-value=2.9e-09 Score=102.52 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=40.5
Q ss_pred cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchh
Q 012882 156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLN 203 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy 203 (454)
.++++||+||++. .+......|..++..+.+.|. ++|+|+|.+|.+|.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~ 140 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALS 140 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc
Confidence 4689999999993 467777789999999988776 78899999999876
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.92 E-value=3.1e-09 Score=98.39 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=37.8
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+|+++|+|||+ ++|+..+..+.+++.++.+.|. +|++||+.
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 589999999999 8999999999999999987766 88888873
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.92 E-value=1.1e-08 Score=93.12 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=36.4
Q ss_pred CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+|+++|+|||+ ++|+.+...+.+.+.++..+|. ++++||+.
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~ 141 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999999 8999999999999988876666 88888874
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.91 E-value=2.1e-09 Score=109.84 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccC---ceEEEechhHHHHHHHHHHHhhhhh--cccchhhhhhccccCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKH---RQRFHFHEAMLKINEHMHRLWKNQV--AEKSLRSSISGWITNLPF 116 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~---k~rv~f~~f~~~~~~~i~~~~~~~~--~~~t~~e~l~~~~~~~~~ 116 (454)
.+.-++++||||.||||+.++|+|.+.|. .+ +.++.+. +|... ...|+.+.+.........
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ikPd-eg~~~~~~vSyK-------------PQyI~~~~~gtV~~~l~~~~~~~~~ 431 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPD-EGSEEDLKVSYK-------------PQYISPDYDGTVEDLLRSAIRSAFG 431 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccccCC-CCCCccceEeec-------------ceeecCCCCCcHHHHHHHhhhhhcc
Confidence 45669999999999999999999998753 22 2333321 22111 122333333221111100
Q ss_pred ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-
Q 012882 117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST- 187 (454)
Q Consensus 117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~- 187 (454)
+.-...++...+.+ .+.+.+-...|+++. .+|.++++|.+||||. -||+..+....+.++++.+.
T Consensus 432 ~s~~~~ei~~pl~l------~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~ 505 (591)
T COG1245 432 SSYFKTEIVKPLNL------EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENN 505 (591)
T ss_pred cchhHHhhcCccch------HHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhc
Confidence 11111222222222 222223333344332 4677999999999999 79999999999999999865
Q ss_pred Cc-EEEEecCCC
Q 012882 188 GT-VLVATSNRA 198 (454)
Q Consensus 188 G~-vlV~ThN~~ 198 (454)
+. .+|+-|+..
T Consensus 506 ~kta~vVdHDi~ 517 (591)
T COG1245 506 EKTALVVDHDIY 517 (591)
T ss_pred CceEEEEeccee
Confidence 33 899999864
No 408
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.91 E-value=6.8e-09 Score=99.28 Aligned_cols=106 Identities=26% Similarity=0.441 Sum_probs=71.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe---chhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF---HEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 120 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f---~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~ 120 (454)
..+||+||+|+|||+|+.+++..+....+ +.++.+ .+|+..+...+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRD---------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHT----------------------------
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHc----------------------------
Confidence 45999999999999999999886521011 233433 3444333222111
Q ss_pred HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
..+..+...+ ...++||+|.++ .-.......+..++..+.++|+.+|+|++.+
T Consensus 86 -----------------~~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 86 -----------------GEIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp -----------------TSHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred -----------------ccchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 1122333333 579999999999 3445568899999999999999889999999
Q ss_pred ccchh
Q 012882 199 PWDLN 203 (454)
Q Consensus 199 P~dLy 203 (454)
|.+|-
T Consensus 141 P~~l~ 145 (219)
T PF00308_consen 141 PSELS 145 (219)
T ss_dssp TTTTT
T ss_pred Ccccc
Confidence 99875
No 409
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.91 E-value=5e-09 Score=107.76 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=93.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhh-hccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSI-SGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l-~~~~~~ 113 (454)
.+++|-+.|+||+|+||||+|++++..... ..|..++...+. +..+++.|+.++|+ ..-+-|+.-|+ ++.
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak--- 636 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK--- 636 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHHHhhc-cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC---
Confidence 467899999999999999999999887652 244455544432 34566677777775 11122222222 111
Q ss_pred CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
...+.+.+.+.+...++++.- +......+-.-+++++. |++++.|.+++|||.| .||-.+.+.+..-
T Consensus 637 ~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa 716 (790)
T KOG0056|consen 637 PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA 716 (790)
T ss_pred CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH
Confidence 112223333344444443310 00011111111223332 5777999999999999 7999999999999
Q ss_pred HHHHHhCCcEEEEecC
Q 012882 181 VSRLLSTGTVLVATSN 196 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN 196 (454)
+.++.+..+.||+.|.
T Consensus 717 L~rlca~RTtIVvAHR 732 (790)
T KOG0056|consen 717 LARLCANRTTIVVAHR 732 (790)
T ss_pred HHHHhcCCceEEEeee
Confidence 9999877678888875
No 410
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=2.9e-09 Score=122.87 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
+.++-++++|++|||||+|+.++.|.++. ..|...++. .+.|++|+ -..+.|+++|+. ++.+++.+
T Consensus 545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-~sG~v~v~g---------siaYv~Q~pWI~ngTvreNIL---FG~~~d~~ 611 (1381)
T KOG0054|consen 545 KKGQLVAVVGPVGSGKSSLLSAILGEMPK-LSGSVAVNG---------SVAYVPQQPWIQNGTVRENIL---FGSPYDEE 611 (1381)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCccc-ccceEEEcC---------eEEEeccccHhhCCcHHHhhh---cCccccHH
Confidence 44556999999999999999999999974 355555543 26777776 245668888872 33567788
Q ss_pred HHHHHHHHHhhhhHHhh---cc--hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH-HHHHHHHHH
Q 012882 120 VMEWVAAEEKYKQEVQM---KN--ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA-LSGIVSRLL 185 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~---~~--~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~-L~~ll~~L~ 185 (454)
+.++++..+.+...... .| .+.+-.-.|++++ ||+.++++|.+||+|. .+|...... +.+.+..+.
T Consensus 612 rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L 691 (1381)
T KOG0054|consen 612 RYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL 691 (1381)
T ss_pred HHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh
Confidence 88899888888653221 11 1112222345554 7888999999999999 799887655 445565555
Q ss_pred hCCcEEEEecCC
Q 012882 186 STGTVLVATSNR 197 (454)
Q Consensus 186 ~~G~vlV~ThN~ 197 (454)
+..++|++||+.
T Consensus 692 ~~KT~ILVTHql 703 (1381)
T KOG0054|consen 692 RGKTVILVTHQL 703 (1381)
T ss_pred cCCEEEEEeCch
Confidence 555599999974
No 411
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.90 E-value=7.2e-09 Score=98.70 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=34.5
Q ss_pred hccCCcEEEeeCCC-CCCHHH-HHHHHHHHHHHHhCC----cEEEEecCC
Q 012882 154 DQRGASILCFDEIQ-TVDVFA-IVALSGIVSRLLSTG----TVLVATSNR 197 (454)
Q Consensus 154 L~~~p~lL~LDEp~-~lD~~~-a~~L~~ll~~L~~~G----~vlV~ThN~ 197 (454)
++.++.+++||||+ ++|+.+ ...+..++..+.+.| .+|++||+.
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 34789999999999 999976 455567888887652 388899975
No 412
>PRK08727 hypothetical protein; Validated
Probab=98.90 E-value=1e-08 Score=98.95 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=48.2
Q ss_pred cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhh---ccccccCC
Q 012882 156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKH---CEIIPIGS 230 (454)
Q Consensus 156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~---~~vv~l~~ 230 (454)
.++++||+||++ ..+..+...+.+++..+.+.|.-+|+|+|.+|.+|..- ...|+.| |.++.+..
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~----------~~dL~SRl~~~~~~~l~~ 161 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV----------LPDLRSRLAQCIRIGLPV 161 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh----------hHHHHHHHhcCceEEecC
Confidence 468999999999 34667778899999999888877777788889887531 1234444 66666665
Q ss_pred c
Q 012882 231 E 231 (454)
Q Consensus 231 ~ 231 (454)
.
T Consensus 162 ~ 162 (233)
T PRK08727 162 L 162 (233)
T ss_pred C
Confidence 4
No 413
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.85 E-value=1.6e-08 Score=97.80 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=78.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 122 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e 122 (454)
+..++|+||+|||||||+.+++..+. ..+.++.|..+.... ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~----~~------------------------------ 87 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRA----WF------------------------------ 87 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHh----hh------------------------------
Confidence 46899999999999999999987653 123445554332100 00
Q ss_pred HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882 123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP 199 (454)
Q Consensus 123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P 199 (454)
...+.+.+ .+.++||+||.+ ..+......|..++..+.+.|. .+|+|++.+|
T Consensus 88 -----------------~~~~~~~~--------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 88 -----------------VPEVLEGM--------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred -----------------hHHHHHHh--------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 01111222 246899999999 3578888899999999998876 6777888888
Q ss_pred cchhcCCchhhhhHHHHHHHHhhc---cccccCCc
Q 012882 200 WDLNQDGMQREIFQKLVAKLEKHC---EIIPIGSE 231 (454)
Q Consensus 200 ~dLy~~~l~r~~F~~~I~~L~~~~---~vv~l~~~ 231 (454)
.+|..- .+.|..|| .++.+..+
T Consensus 143 ~~l~~~----------~~~L~SRl~~g~~~~l~~~ 167 (235)
T PRK08084 143 RQLNLG----------LPDLASRLDWGQIYKLQPL 167 (235)
T ss_pred HHcCcc----------cHHHHHHHhCCceeeecCC
Confidence 886531 13455566 67777665
No 414
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.6e-09 Score=107.35 Aligned_cols=159 Identities=24% Similarity=0.335 Sum_probs=97.1
Q ss_pred cccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh
Q 012882 18 RWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ 97 (454)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~ 97 (454)
+.|+||+.-.++.++-|| -||||.|+||+|+|||+|.++++|....+... ....+|- ++.-.++.
T Consensus 318 EiVefLkdP~kftrLGGK------LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~---~sGSEFd-Em~VGvGA----- 382 (752)
T KOG0734|consen 318 EIVEFLKDPTKFTRLGGK------LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY---ASGSEFD-EMFVGVGA----- 382 (752)
T ss_pred HHHHHhcCcHHhhhccCc------CCCceEEeCCCCCchhHHHHHhhcccCCCeEe---ccccchh-hhhhcccH-----
Confidence 445566665566555443 68999999999999999999999977421100 0001111 11111100
Q ss_pred hcccchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--C-----CC
Q 012882 98 VAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--T-----VD 170 (454)
Q Consensus 98 ~~~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~-----lD 170 (454)
.++ .+ +..-|+. +-|+|+++||.. | -|
T Consensus 383 ---------------------rRV---------------Rd-LF~aAk~---------~APcIIFIDEiDavG~kR~~~~ 416 (752)
T KOG0734|consen 383 ---------------------RRV---------------RD-LFAAAKA---------RAPCIIFIDEIDAVGGKRNPSD 416 (752)
T ss_pred ---------------------HHH---------------HH-HHHHHHh---------cCCeEEEEechhhhcccCCccH
Confidence 000 00 1222333 569999999997 2 23
Q ss_pred H-HHHHHHHHHHHHHH----hCCcEEEEecCCCccchhc-----CCchhhhhHH------HHHHHHhhccccccCCchhh
Q 012882 171 V-FAIVALSGIVSRLL----STGTVLVATSNRAPWDLNQ-----DGMQREIFQK------LVAKLEKHCEIIPIGSEVDY 234 (454)
Q Consensus 171 ~-~~a~~L~~ll~~L~----~~G~vlV~ThN~~P~dLy~-----~~l~r~~F~~------~I~~L~~~~~vv~l~~~~Dy 234 (454)
. ...+-|.+||.++- ..|+|+|...|+ |++|.+ ++++|..-.| ..++|+.+..-+.++..+|.
T Consensus 417 ~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf-pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~ 495 (752)
T KOG0734|consen 417 QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF-PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP 495 (752)
T ss_pred HHHHHHHHHHHHHHhcCcCcCCceEEEeccCC-hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH
Confidence 3 34456777777772 247788888887 555544 5555544333 46889999999999999998
Q ss_pred hhhc
Q 012882 235 RRLI 238 (454)
Q Consensus 235 R~~~ 238 (454)
..+.
T Consensus 496 ~iiA 499 (752)
T KOG0734|consen 496 KIIA 499 (752)
T ss_pred hHhc
Confidence 7654
No 415
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.4e-09 Score=113.68 Aligned_cols=146 Identities=22% Similarity=0.322 Sum_probs=92.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
...+|+||.+|||+||||||+.++|+.....+ -..|...+.+ ..+..+ ++
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n---FlsvkgpEL~-------sk~vGe--------------------SE 513 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMN---FLSVKGPELF-------SKYVGE--------------------SE 513 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcCC---eeeccCHHHH-------HHhcCc--------------------hH
Confidence 45789999999999999999999999866321 1122121111 111100 00
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCC--C------HHHHHHHHHHHHHHH----h
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV--D------VFAIVALSGIVSRLL----S 186 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~l--D------~~~a~~L~~ll~~L~----~ 186 (454)
. ++ ..+...|+.. .|.|++|||...+ . -++...|..||+++- .
T Consensus 514 r---~i-------------r~iF~kAR~~---------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~ 568 (693)
T KOG0730|consen 514 R---AI-------------REVFRKARQV---------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL 568 (693)
T ss_pred H---HH-------------HHHHHHHhhc---------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc
Confidence 0 00 0012335443 4899999999621 1 234567778888773 2
Q ss_pred CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhcc
Q 012882 187 TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLIA 239 (454)
Q Consensus 187 ~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~~ 239 (454)
++++||+..||+ |+-|.++++.+-.+.| ..++|+.+.+-+.++..+|+.....
T Consensus 569 k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 569 KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 345888888985 4556667777755543 5788999999999988889887653
No 416
>PRK05642 DNA replication initiation factor; Validated
Probab=98.84 E-value=1.5e-08 Score=97.82 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=40.9
Q ss_pred cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhc
Q 012882 156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQ 204 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~ 204 (454)
.+.++||+|+.+. -+......|..+++.+.+.|+.+|+|++.+|.++..
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~ 146 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPI 146 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence 4579999999993 456777889999999999899888899998887653
No 417
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.83 E-value=3.4e-08 Score=104.00 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCcEEEeeCCC-CCCH-HHHHHHHHHHHHHHhCCcEEEEecCCCccch
Q 012882 157 GASILCFDEIQ-TVDV-FAIVALSGIVSRLLSTGTVLVATSNRAPWDL 202 (454)
Q Consensus 157 ~p~lL~LDEp~-~lD~-~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dL 202 (454)
++++||+||++ ..+. .....+..++..+.+.|..+|+|+|.+|.+|
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 58999999999 4443 3456788999999998887777888888875
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.83 E-value=2.8e-09 Score=99.13 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=34.1
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhC-Cc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+|+++++|||+ ++|+.+...+ ..++..+.++ |. +|++||+.
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 489999999999 8999976664 6777877764 66 88999974
No 419
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.6e-08 Score=99.42 Aligned_cols=145 Identities=13% Similarity=0.109 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhhhcccchhhhhhccccC--CCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQVAEKSLRSSISGWITN--LPF 116 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~--~~~ 116 (454)
+.-|+|+|.|||||||+++++.|...|+ +|..++..... ..+.++.+..+..+. .+|...-+ ...
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~Pq-sG~I~ldg~pV~~e~ledYR~LfSavFsDy--------hLF~~ll~~e~~a 419 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVSAEQLEDYRKLFSAVFSDY--------HLFDQLLGPEGKA 419 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC-CCceeECCccCCCCCHHHHHHHHHHHhhhH--------hhhHhhhCCccCC
Confidence 4559999999999999999999998753 55555544321 223333333332210 01111111 113
Q ss_pred ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH-HHHHhC
Q 012882 117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV-SRLLST 187 (454)
Q Consensus 117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll-~~L~~~ 187 (454)
++..++..+..+.+..+....+--. .--+++-++ .|++.+-+||+|||=. --||+-++.++..+ -.++++
T Consensus 420 s~q~i~~~LqrLel~~ktsl~d~~f-s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q 498 (546)
T COG4615 420 SPQLIEKWLQRLELAHKTSLNDGRF-SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ 498 (546)
T ss_pred ChHHHHHHHHHHHHhhhhcccCCcc-cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh
Confidence 3455666666666544321111000 000111111 3677899999999999 69999998887655 556778
Q ss_pred Cc-EEEEecCC
Q 012882 188 GT-VLVATSNR 197 (454)
Q Consensus 188 G~-vlV~ThN~ 197 (454)
|+ |+.+||+-
T Consensus 499 GKTI~aIsHDd 509 (546)
T COG4615 499 GKTIFAISHDD 509 (546)
T ss_pred CCeEEEEecCc
Confidence 98 88888873
No 420
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.82 E-value=1.6e-08 Score=96.36 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=38.6
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-C-c-EEEEecCCC
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-G-T-VLVATSNRA 198 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G-~-vlV~ThN~~ 198 (454)
+.+|++|++|||+ ++|+..+..+.+++..+.+. | . +|++||+..
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~ 193 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL 193 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc
Confidence 4799999999999 89999999999999999776 5 3 899998753
No 421
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.3e-09 Score=108.99 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=77.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE----EechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF----HFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv----~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
---+.++|+||+||||+++++.+.+.|. .+-..+ .+.-|.+.-...+....+ ..+.+.....+ ..+
T Consensus 390 ~sRi~~vg~ng~gkst~lKi~~~~l~~~-rgi~~~~~r~ri~~f~Qhhvd~l~~~v~-------~vd~~~~~~pG--~~~ 459 (582)
T KOG0062|consen 390 DSRISRVGENGDGKSTLLKILKGDLTPT-RGIVGRHPRLRIKYFAQHHVDFLDKNVN-------AVDFMEKSFPG--KTE 459 (582)
T ss_pred hhhhheeccCchhHHHHHHHHhccCCcc-cceeeecccceecchhHhhhhHHHHHhH-------HHHHHHHhCCC--CCH
Confidence 3447899999999999999999977532 221111 111121110000000000 00001000011 134
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcE
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTV 190 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~v 190 (454)
+..+..++.+++.+.... . -...|++++ .....+|.+|+||||| .||..+-..|.+-|... +|.|
T Consensus 460 ee~r~hl~~~Gl~g~la~----~-si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGV 532 (582)
T KOG0062|consen 460 EEIRRHLGSFGLSGELAL----Q-SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGV 532 (582)
T ss_pred HHHHHHHHhcCCCchhhh----c-cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcE
Confidence 556666676776542211 1 123345554 2335899999999999 69998888887777665 5779
Q ss_pred EEEecCC
Q 012882 191 LVATSNR 197 (454)
Q Consensus 191 lV~ThN~ 197 (454)
+++|||.
T Consensus 533 v~VSHd~ 539 (582)
T KOG0062|consen 533 VLVSHDE 539 (582)
T ss_pred EEEECcH
Confidence 9999995
No 422
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.80 E-value=2.2e-08 Score=98.56 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=24.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
+.+.|+||+|||||||++++++.+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 78999999999999999999999874
No 423
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=2.8e-08 Score=91.12 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=38.3
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
.+--|.+||||. +|.+.-++.|..+|..+.+.|. +||+||.
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHS 187 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS 187 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 567899999999 8999999999999999999998 9999997
No 424
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=2.1e-08 Score=115.82 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=112.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhh--hccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSI--SGWI 111 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l--~~~~ 111 (454)
...++.-++|+|..|||||||+.+|+..+++ ..|+..+..-+- ..++++++..++|+ ..-..|++.|+ +..
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e- 1239 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDE- 1239 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccc-
Confidence 3456788999999999999999999999874 355555544322 23677888888887 23344566555 111
Q ss_pred cCCCCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.+.+..=+.++...++..-. .+..+.+=...++.++ |||+++++||+|||.| ..|+++-..+.
T Consensus 1240 ----~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ 1315 (1381)
T KOG0054|consen 1240 ----YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 1315 (1381)
T ss_pred ----cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHH
Confidence 11222223344444432110 0111111111223332 7889999999999999 89999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhh
Q 012882 179 GIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYR 235 (454)
Q Consensus 179 ~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR 235 (454)
+.+++-++.-+||.+.|. ...=+.+|++ +..++++|++.|+|....
T Consensus 1316 ~tIR~~F~dcTVltIAHR-l~TVmd~DrV----------lVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1316 KTIREEFKDCTVLTIAHR-LNTVMDSDRV----------LVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred HHHHHHhcCCeEEEEeec-cchhhhcCeE----------EEeeCCeEeecCChHHHH
Confidence 999999886558888874 3333333432 344667777777764433
No 425
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.78 E-value=2.9e-08 Score=106.88 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=40.8
Q ss_pred cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882 156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 203 (454)
Q Consensus 156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy 203 (454)
.+++|||+||++ ..+..+...|+.+|+.+.+.|+.||+|+|++|.+|-
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 578999999999 355667788999999999988877789999998874
No 426
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.78 E-value=3.9e-08 Score=103.76 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=41.4
Q ss_pred cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccch
Q 012882 156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDL 202 (454)
Q Consensus 156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dL 202 (454)
.++++||+||++ ..+......|..++..+.+.|..+|+|+|.+|.++
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 579999999999 35577888999999999999888899999999876
No 427
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.3e-08 Score=105.29 Aligned_cols=144 Identities=21% Similarity=0.309 Sum_probs=83.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
+..+|+||.|+||+|||||+|.++|+|.+.-+. ..+... ..+.-+..+ ++
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf---~~isAp-------eivSGvSGE--------------------SE 268 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF---LSISAP-------EIVSGVSGE--------------------SE 268 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCce---Eeecch-------hhhcccCcc--------------------cH
Confidence 557899999999999999999999999875211 111110 111111100 01
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC----CCHHHH----HHHHHHHHHH---HhC
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT----VDVFAI----VALSGIVSRL---LST 187 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~----lD~~~a----~~L~~ll~~L---~~~ 187 (454)
..+++ +..-|.. .-|+|+++||... -+.+.+ .++.+|+..+ ...
T Consensus 269 kkiRe----------------lF~~A~~---------~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 269 KKIRE----------------LFDQAKS---------NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE 323 (802)
T ss_pred HHHHH----------------HHHHHhc---------cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 11111 1112333 3599999999982 222332 3444444443 211
Q ss_pred ---C--cEEEEecCCCccchhc-----CCchhhhhH------HHHHHHHhhccccccCCchhhhhhc
Q 012882 188 ---G--TVLVATSNRAPWDLNQ-----DGMQREIFQ------KLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 188 ---G--~vlV~ThN~~P~dLy~-----~~l~r~~F~------~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
| +++|.+.|| |+-|.+ +++.|+.-+ ..-.+|...|+-+.+++..||++..
T Consensus 324 ~~~g~~VlVIgATnR-PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA 389 (802)
T KOG0733|consen 324 KTKGDPVLVIGATNR-PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLA 389 (802)
T ss_pred ccCCCCeEEEecCCC-CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHH
Confidence 3 366777777 444443 444444322 2346888999999999999999865
No 428
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.9e-08 Score=99.97 Aligned_cols=154 Identities=12% Similarity=0.150 Sum_probs=88.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhh-hcccchhhhh-hcccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQ-VAEKSLRSSI-SGWIT 112 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~-~~~~t~~e~l-~~~~~ 112 (454)
..++++-+.++|++|+||||++++++....++ .|...+...... ..+++.++.++|.. ..+-|..-++ ++..
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~-sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~- 362 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFRFYDVN-SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP- 362 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHHHhCCc-CceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-
Confidence 34677889999999999999999999988643 444444333221 24556666666651 1111222222 1111
Q ss_pred CCCCChHHHHHHHHHHhhhh---HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQ---EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~---~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
....+.+...++...+.. .. +.+-...+..-.++++. |+++++|+||+|||.| .||-.+...+..
T Consensus 363 --~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 363 --DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred --cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 111122222222222211 00 00111111111122221 6778999999999999 799999999999
Q ss_pred HHHHHHhCCcEEEEecC
Q 012882 180 IVSRLLSTGTVLVATSN 196 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN 196 (454)
-|+.+....+.+|+.|-
T Consensus 441 ~l~~~~~~rttlviahr 457 (497)
T COG5265 441 ALREVSAGRTTLVIAHR 457 (497)
T ss_pred HHHHHhCCCeEEEEeeh
Confidence 99998755558888885
No 429
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.73 E-value=1.4e-08 Score=94.30 Aligned_cols=146 Identities=20% Similarity=0.162 Sum_probs=81.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE----EechhHHHHHHHHHHHhhh------------hhcccchh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF----HFHEAMLKINEHMHRLWKN------------QVAEKSLR 104 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv----~f~~f~~~~~~~i~~~~~~------------~~~~~t~~ 104 (454)
+.+.--.|+|.||+|||||++++.|.--. -.+...| .||+-...-...+.|+..+ +..+.++.
T Consensus 38 p~gsRcLlVGaNGaGKtTlLKiLsGKhmv-~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae 116 (291)
T KOG2355|consen 38 PAGSRCLLVGANGAGKTTLLKILSGKHMV-GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAE 116 (291)
T ss_pred CCCceEEEEecCCCchhhhHHHhcCcccc-cCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHH
Confidence 44555789999999999999999985321 0133333 2332211111112222111 11133444
Q ss_pred hhhhccccCCCCChHHHHHHHHHHhhhhH------HhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 105 SSISGWITNLPFDSKVMEWVAAEEKYKQE------VQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 105 e~l~~~~~~~~~~~~~~e~ll~~~~l~~~------~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
..+|+--. .+..+.+.+...+.+.-. .+.....-+++. .|++.-++|+|||.| -||+..++.|
T Consensus 117 ~mifgV~g---~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicM-------GLL~PfkVLLLDEVTVDLDVlARadL 186 (291)
T KOG2355|consen 117 HMIFGVGG---DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICM-------GLLKPFKVLLLDEVTVDLDVLARADL 186 (291)
T ss_pred HHHhhccC---CChhHhhhhhhheeccceEEEeeccccchhhhHHHH-------hcccceeEEEeeeeEeehHHHHHHHH
Confidence 44433211 122555666655554210 000111122222 345778899999999 5999999999
Q ss_pred HHHHHHHHh-CCc-EEEEecCC
Q 012882 178 SGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
.++|++--+ +|. |+.+||-.
T Consensus 187 LeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 187 LEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred HHHHHHHHhhcCcEEEEEeeec
Confidence 999987665 576 88899864
No 430
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.71 E-value=8.1e-08 Score=101.50 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=39.4
Q ss_pred cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882 156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 203 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy 203 (454)
.++++||+||.+. -.......+..+|..+.+.|..+|+|+|.+|.+|.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 4689999999993 34456778999999999988877888899988864
No 431
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=7.5e-08 Score=101.37 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=40.4
Q ss_pred cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882 156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 203 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy 203 (454)
.++++|++||++. -...+...+..++..+...|..+|+|+|.+|.+|.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 5789999999993 35567888999999998888888888899988864
No 432
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.70 E-value=1.1e-07 Score=98.83 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|+.|+||+|||||+|++++++.+.
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 346799999999999999999999998764
No 433
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.69 E-value=1e-07 Score=99.27 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=38.8
Q ss_pred cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882 156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 203 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy 203 (454)
.++++|++||++. -.......+..+|..+.+.|..+|+|+|.+|.+|.
T Consensus 198 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 198 RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 4589999999993 33345678999999999888878888999998864
No 434
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.68 E-value=4.5e-08 Score=93.92 Aligned_cols=27 Identities=37% Similarity=0.712 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+|+.|.+|||+|+||||+.+++++...
T Consensus 150 APknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccC
Confidence 789999999999999999999999775
No 435
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.67 E-value=8.8e-08 Score=100.65 Aligned_cols=171 Identities=13% Similarity=0.090 Sum_probs=99.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhh-cccchhhhhhcc-----ccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQV-AEKSLRSSISGW-----ITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~-~~~t~~e~l~~~-----~~~ 113 (454)
.+.++.+.|.||||||||+|++++.|.=|. ..|+...++..-. +.+-+++|+.+ ...|.++.+.-- ...
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~~----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGGP----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCCC----CceEEecCCCCccccchhheeeccCccccccc
Confidence 345677999999999999999999997762 2233222221100 22334454421 112333332110 001
Q ss_pred CCCChHHHHHHHHHHhhhhHH---h-hc-chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEV---Q-MK-NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~---~-~~-~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
...+......+++..++.+-. + .+ .......+.++.+. |-+.++|++-+|||-| .+|..-...+.++
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~ 612 (659)
T KOG0060|consen 533 KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRK 612 (659)
T ss_pred cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHH
Confidence 112234445555555543311 1 11 12233444454443 5667999999999999 7888877778777
Q ss_pred HHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882 181 VSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 236 (454)
Q Consensus 181 l~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~ 236 (454)
+++ .|...|+-++| -.+-+.|-.++.++|+..||.
T Consensus 613 ~r~---~giT~iSVgHR------------------kSL~kfHd~~L~~~g~g~w~~ 647 (659)
T KOG0060|consen 613 CRE---MGITFISVGHR------------------KSLWKFHDYVLRMDGRGSWRF 647 (659)
T ss_pred HHH---cCCeEEEeccH------------------HHHHhhhhEEEEecCCCceEE
Confidence 665 57877766665 245567788899999877775
No 436
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.64 E-value=1.1e-07 Score=88.84 Aligned_cols=153 Identities=15% Similarity=0.228 Sum_probs=85.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-cCceEEEechhHH----------HHHHHHHHHhhh----hhcccchhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAML----------KINEHMHRLWKN----QVAEKSLRS 105 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-~~k~rv~f~~f~~----------~~~~~i~~~~~~----~~~~~t~~e 105 (454)
+-+.--+|+|.+|+|||.+.++|+|.....- ...-|..|++.-. -+-+.+..+.|+ +.+..++..
T Consensus 31 nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~ 110 (330)
T COG4170 31 NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGR 110 (330)
T ss_pred ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHH
Confidence 3456678999999999999999999764210 0112333333210 111222333332 112222222
Q ss_pred ----hhhccccC------CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882 106 ----SISGWITN------LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ- 167 (454)
Q Consensus 106 ----~l~~~~~~------~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~- 167 (454)
++..|.+. +.+...++-+++...++++.. +++.....++..+. .|++.+|++|+-|||+
T Consensus 111 QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk---DIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN 187 (330)
T COG4170 111 QLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK---DIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187 (330)
T ss_pred HHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH---HHHHhCcchhccCcceeeeeehhhccCCceEeccCCCc
Confidence 22222111 122223444555555554321 22222222222222 5788999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecC
Q 012882 168 TVDVFAIVALSGIVSRLLST-GT-VLVATSN 196 (454)
Q Consensus 168 ~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN 196 (454)
.+++.++..+.+++.++.+. |+ +++++|+
T Consensus 188 ~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D 218 (330)
T COG4170 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218 (330)
T ss_pred ccCccHHHHHHHHHHHhhccCCceEEEEccc
Confidence 79999999999999999865 66 6666665
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.63 E-value=4.7e-07 Score=87.24 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=35.6
Q ss_pred cCCcEEEeeCCC-CC----CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882 156 RGASILCFDEIQ-TV----DVFAIVALSGIVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 156 ~~p~lL~LDEp~-~l----D~~~a~~L~~ll~~L~~~G~vlV~ThN~~ 198 (454)
.+|+++++|||+ .+ |+.....+.++++.+.+.|.++++||+..
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 479999999999 55 77777888899999988888888888853
No 438
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.63 E-value=1.4e-07 Score=112.02 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=42.4
Q ss_pred hhhc---cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 152 HADQ---RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 152 rAL~---~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
++|+ .+|++|+||||+ +||+.+...+.++|.++.+.|. ||++|||..
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~ 873 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH 873 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5675 699999999999 8999999999999999998887 999999864
No 439
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.61 E-value=6e-08 Score=98.39 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCC-------cccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-------IVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~-------~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~ 113 (454)
.++.-+++.|++|+||||+++++.|...+ +.+++..+.-+... ..++.+..+.+. ..++..+...
T Consensus 407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-------a~iPge~Ep~f~-~~tilehl~s 478 (593)
T COG2401 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-------ALIPGEYEPEFG-EVTILEHLRS 478 (593)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-------hccCcccccccC-chhHHHHHhh
Confidence 46677999999999999999999996531 12333333222210 111222111111 1122222233
Q ss_pred CCCChHHHHHHHHHHhhhhHHhh----------cchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQM----------KNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~~----------~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
...+...+.+++...++.+..-. ...-..+|+ ++...|.+++.|||. .||..+++.+.+-|.
T Consensus 479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAk-------llaerpn~~~iDEF~AhLD~~TA~rVArkis 551 (593)
T COG2401 479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAK-------LLAERPNVLLIDEFAAHLDELTAVRVARKIS 551 (593)
T ss_pred ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHH-------HHhcCCCcEEhhhhhhhcCHHHHHHHHHHHH
Confidence 33444445556655555432100 011122333 445889999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++... |. ++++||+.
T Consensus 552 elaRe~giTlivvThrp 568 (593)
T COG2401 552 ELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHHHhCCeEEEEecCH
Confidence 99854 66 88888874
No 440
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.61 E-value=1.1e-07 Score=106.10 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=36.4
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.++.+++||||+ ++|+.+...+ ..++..+.+.|. +|++||+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 579999999999 9999999888 578888888887 88888874
No 441
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.60 E-value=4.1e-07 Score=87.16 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=35.0
Q ss_pred cCCcEEEeeCCC-CCCHHHHHH-HHHHHHHHHhC-Cc-EEEEecCCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVA-LSGIVSRLLST-GT-VLVATSNRA 198 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~-L~~ll~~L~~~-G~-vlV~ThN~~ 198 (454)
.++.+++||||. +++..+... ...+++.+.+. +. ++++||+..
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 579999999999 888777766 46788888876 66 999999853
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.60 E-value=1.9e-07 Score=89.13 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=29.5
Q ss_pred cCCcEEEeeCCC-CCCHHHHH-HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIV-ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~-~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+|++++||||. +++..+.. ....++..+.+. +. +|++||+.
T Consensus 108 ~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~ 153 (216)
T cd03284 108 TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYH 153 (216)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcH
Confidence 689999999995 44433332 345667777766 66 89999974
No 443
>PRK06620 hypothetical protein; Validated
Probab=98.60 E-value=2.6e-07 Score=88.07 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhcc---ccccCCc
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCE---IIPIGSE 231 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~---vv~l~~~ 231 (454)
..++||+||.+.. ....|..+++.+.+.|..+++|++.+|.++. ++.|..|+. ++.+..+
T Consensus 85 ~~d~lliDdi~~~---~~~~lf~l~N~~~e~g~~ilits~~~p~~l~------------l~~L~SRl~~gl~~~l~~p 147 (214)
T PRK06620 85 KYNAFIIEDIENW---QEPALLHIFNIINEKQKYLLLTSSDKSRNFT------------LPDLSSRIKSVLSILLNSP 147 (214)
T ss_pred cCCEEEEeccccc---hHHHHHHHHHHHHhcCCEEEEEcCCCccccc------------hHHHHHHHhCCceEeeCCC
Confidence 4689999999943 2357889999999999988888888888641 123444444 7777665
No 444
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.59 E-value=2.9e-07 Score=94.69 Aligned_cols=29 Identities=41% Similarity=0.670 Sum_probs=26.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+|+|+.|+||+|||||+|++++++.+.
T Consensus 153 ~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 153 IEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 45789999999999999999999998774
No 445
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.3e-07 Score=86.19 Aligned_cols=144 Identities=25% Similarity=0.303 Sum_probs=98.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
....|+|+.||||+|+|||.|.++.+..... .-.|+...+..+ +-++.-..
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht~c---~firvsgselvq---k~igegsr----------------------- 227 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVSGSELVQ---KYIGEGSR----------------------- 227 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhcce---EEEEechHHHHH---HHhhhhHH-----------------------
Confidence 4567999999999999999999999887653 124554443322 22221100
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHHH--
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRLL-- 185 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L~-- 185 (454)
+-..+.-+|++ +.|.|+++||.. +-|..-+..+.++++.|-
T Consensus 228 -----------------mvrelfvmare---------hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 228 -----------------MVRELFVMARE---------HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred -----------------HHHHHHHHHHh---------cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 00011233444 679999999985 247777777888888873
Q ss_pred h--CCc-EEEEecCC----CccchhcCCchhhhhH------HHHHHHHhhccccccCCchhhhhhc
Q 012882 186 S--TGT-VLVATSNR----APWDLNQDGMQREIFQ------KLVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 186 ~--~G~-vlV~ThN~----~P~dLy~~~l~r~~F~------~~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
+ .+. ||++| || .|+-|.+++++|..-. ...++|+-|.+-+++-.+.|.|+..
T Consensus 282 eatknikvimat-nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kia 346 (404)
T KOG0728|consen 282 EATKNIKVIMAT-NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIA 346 (404)
T ss_pred ccccceEEEEec-cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHH
Confidence 2 345 66666 54 4788889999986533 3578899999999999999999864
No 446
>PLN03025 replication factor C subunit; Provisional
Probab=98.55 E-value=2.6e-07 Score=93.32 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=39.8
Q ss_pred CceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 1 MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+-|.++|+|.+++.-.|.-- .+ +.+..++.. .....++|+||+|+||||++.+++..+.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~-~~---~~L~~~~~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNED-AV---SRLQVIARD-----GNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CChhhhcCCCCHHHhcCcHH-HH---HHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999998765210 00 123333222 1223599999999999999999988763
No 447
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.55 E-value=3.7e-07 Score=94.14 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=52.3
Q ss_pred CCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 157 GASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 157 ~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
+.++||+|..+ .-+......+..+|+.+.+.|+-||+|++++|.+|-.-- -....++ ..|.++.+..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~------~rL~SR~-~~Gl~~~I~~P 244 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE------DRLRSRL-EWGLVVEIEPP 244 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc------HHHHHHH-hceeEEeeCCC
Confidence 57999999999 566677999999999999999999999999999976311 0122333 35667777777
No 448
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.7e-07 Score=100.75 Aligned_cols=145 Identities=24% Similarity=0.262 Sum_probs=92.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
....|+|+.|+||+|||||.|+++++|...-+. ..+...+|+.. ....+..
T Consensus 340 GAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF---~svSGSEFvE~-~~g~~as------------------------- 390 (774)
T KOG0731|consen 340 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSVSGSEFVEM-FVGVGAS------------------------- 390 (774)
T ss_pred CCcCcCceEEECCCCCcHHHHHHHHhcccCCce---eeechHHHHHH-hcccchH-------------------------
Confidence 456899999999999999999999999764211 22333344321 1111000
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--C----------CCHHHHHHHHHHHHHHH-
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--T----------VDVFAIVALSGIVSRLL- 185 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~----------lD~~~a~~L~~ll~~L~- 185 (454)
+ . .-+...|+. .-|.+++.||+. + -.-....-|.+++.++=
T Consensus 391 -r---------------v-r~lf~~ar~---------~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 391 -R---------------V-RDLFPLARK---------NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred -H---------------H-HHHHHHhhc---------cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 0 0 012334544 359999999985 1 12234456777887773
Q ss_pred ---hCCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccC-Cchhhhhhc
Q 012882 186 ---STGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIG-SEVDYRRLI 238 (454)
Q Consensus 186 ---~~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~-~~~DyR~~~ 238 (454)
..|+|++++.||+ |+-|.++++.|..+.+ -.++++-|..-+.++ ..+||.+..
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence 2345888888875 6667778888877653 246777788888884 678998843
No 449
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=3.6e-07 Score=87.89 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=36.7
Q ss_pred cEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhc
Q 012882 159 SILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQ 204 (454)
Q Consensus 159 ~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~ 204 (454)
.+||+|+.+.+. .+...|..+++.+.+.|+.+|+|++.+|.+|..
T Consensus 89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~ 133 (226)
T PRK09087 89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNV 133 (226)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhcc
Confidence 689999999542 345679999999999999888899988887654
No 450
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.51 E-value=9.6e-07 Score=89.56 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|++||||+|||||++.+++++.+.
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999999999999774
No 451
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.50 E-value=4.7e-07 Score=93.97 Aligned_cols=30 Identities=40% Similarity=0.654 Sum_probs=26.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+..+|+|+.|+||+|||||+++++++..+.
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 346789999999999999999999998764
No 452
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.50 E-value=2.6e-07 Score=108.14 Aligned_cols=29 Identities=17% Similarity=0.511 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+|+|+.|+||+|||||.|++++++...
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999999764
No 453
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=5.9e-07 Score=90.71 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=39.5
Q ss_pred CceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 1 MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|-|.++|+|.+++.-.|. +. -.+.+.+++.. +....++|+||+|+||||++++++..+.
T Consensus 3 ~~w~~ky~P~~~~~~~g~--~~--~~~~L~~~~~~-----~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQ--DE--VVERLSRAVDS-----PNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CchHHhhCCCcHHHhcCC--HH--HHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 569999999988754431 00 11223333322 1223699999999999999999988764
No 454
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.1e-07 Score=96.93 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=41.2
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhc
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQ 204 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~ 204 (454)
|||..+|.+|+||||| .||.....+|-..|.... .+.+|++|+...-|-.|
T Consensus 425 RALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVC 476 (807)
T ss_pred HHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHH
Confidence 6888999999999999 799988888887777663 35999999976554444
No 455
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.49 E-value=6.7e-07 Score=77.16 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHhCCC
Q 012882 46 LYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++|+||+|+||||+++.++..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999874
No 456
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.49 E-value=6e-07 Score=86.08 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=28.2
Q ss_pred ccCCcEEEeeCC---C-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecC
Q 012882 155 QRGASILCFDEI---Q-TVDVFAIVALSGIVSRLLS-TGT-VLVATSN 196 (454)
Q Consensus 155 ~~~p~lL~LDEp---~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN 196 (454)
+.+|++++|||| | ++|..... +.++..+.+ .|. +|++||+
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhcCCCeEEEEech
Confidence 368999999999 5 57776653 334455554 356 8888885
No 457
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.48 E-value=5e-07 Score=94.65 Aligned_cols=30 Identities=40% Similarity=0.657 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|+.|+||+|||||+|++++++.+.
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 346789999999999999999999999775
No 458
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=5.2e-07 Score=89.25 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=35.7
Q ss_pred CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882 157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN 196 (454)
Q Consensus 157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN 196 (454)
+|++||+|||+ ++|+.....+.++|.++.+...+|++||+
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~ 232 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHL 232 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 99999999999 89999999999999998653338899987
No 459
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.47 E-value=9.1e-07 Score=88.84 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=39.9
Q ss_pred ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|.++|+|-+++.-.+.=. -.+.+..++.+ ...|..++|+||+|+||||++++++..+
T Consensus 10 ~w~~kyrP~~~~~~~~~~~----~~~~l~~~~~~----~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAA----DKETFKSIVKK----GRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred cceeccCCCcHHHhcCcHH----HHHHHHHHHhc----CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4889999998888765111 11233344332 1345667779999999999999998765
No 460
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.47 E-value=6.3e-07 Score=95.86 Aligned_cols=29 Identities=38% Similarity=0.638 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...|+|++|+||+|||||+|++++++...
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999998663
No 461
>CHL00176 ftsH cell division protein; Validated
Probab=98.46 E-value=6.3e-07 Score=98.14 Aligned_cols=28 Identities=39% Similarity=0.681 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
...|+|++|+||+|+|||+|++++++..
T Consensus 213 ~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 213 AKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999999865
No 462
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.45 E-value=6.9e-07 Score=100.14 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=35.8
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHH-HHHHHHHhCCc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALS-GIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~-~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+|.|++||||+ ++|+.+...+. .++..+.+.|. +|++||+.
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~ 450 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK 450 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH
Confidence 579999999999 99999888774 57888888887 88889884
No 463
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.45 E-value=8.9e-07 Score=99.11 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=49.9
Q ss_pred cCCcEEEeeCCCCC--------C-HHHHHHHHHHHHHHH---h-CCcEEEEecCCC----ccchhcCCchhhhhHHH---
Q 012882 156 RGASILCFDEIQTV--------D-VFAIVALSGIVSRLL---S-TGTVLVATSNRA----PWDLNQDGMQREIFQKL--- 215 (454)
Q Consensus 156 ~~p~lL~LDEp~~l--------D-~~~a~~L~~ll~~L~---~-~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~--- 215 (454)
..|.||+|||...+ + ......+..++..+- . .++++|+|+|++ |+-+.++++++..++|.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 46999999998621 1 123345556666653 2 345888888875 44455566666554432
Q ss_pred ---HHHHHhhccccccCCchhhhhhc
Q 012882 216 ---VAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 216 ---I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
..+++.+.+-+.++...|+....
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la 650 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELA 650 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHH
Confidence 44555555666666666776543
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=2.1e-06 Score=74.22 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=31.7
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEecCCCc
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLS-----TGTVLVATSNRAP 199 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~-----~G~vlV~ThN~~P 199 (454)
.++.+|++||++.++......+..++..+.. .+..+|+|+|..+
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5789999999997666667777788877754 4565556656544
No 465
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=9.8e-07 Score=100.04 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=40.9
Q ss_pred hhhcc---CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQR---GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~---~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+. +|++++||||+ +||+.++..|.++|.++.+.|. |||+|||.
T Consensus 841 ~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~ 891 (924)
T TIGR00630 841 KELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL 891 (924)
T ss_pred HHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46665 59999999999 8999999999999999988877 89999984
No 466
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.42 E-value=6.9e-07 Score=85.06 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=35.0
Q ss_pred cCCcEEEeeCCCCCCH--HHHHHHHHHHHHHHhCCcEEEEecCCCccch
Q 012882 156 RGASILCFDEIQTVDV--FAIVALSGIVSRLLSTGTVLVATSNRAPWDL 202 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~--~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dL 202 (454)
.++++|++||.+.++. .....|..++..+.+.+..+|+|++..|.++
T Consensus 89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~ 137 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence 3578999999995443 4477888899888777676777777766554
No 467
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.8e-06 Score=83.18 Aligned_cols=117 Identities=30% Similarity=0.367 Sum_probs=73.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
...+|+|+.||||+|+|||.+.++.++.... --.||...+..+. .++.-
T Consensus 207 gidppkgvllygppgtgktl~aravanrtda---cfirvigselvqk---yvgeg------------------------- 255 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDA---CFIRVIGSELVQK---YVGEG------------------------- 255 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCc---eEEeehhHHHHHH---Hhhhh-------------------------
Confidence 5678999999999999999999999987642 2245544333221 11110
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHHH--
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRLL-- 185 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L~-- 185 (454)
.+ +-..+.++|+. ++++|++|||.. +-|-.-+.-+.+++..|-
T Consensus 256 ---------ar------mvrelf~mart---------kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 256 ---------AR------MVRELFEMART---------KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF 311 (435)
T ss_pred ---------HH------HHHHHHHHhcc---------cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence 00 00011223332 679999999985 234555667777777773
Q ss_pred -hCCc--EEEEecCCC----ccchhcCCchhhh
Q 012882 186 -STGT--VLVATSNRA----PWDLNQDGMQREI 211 (454)
Q Consensus 186 -~~G~--vlV~ThN~~----P~dLy~~~l~r~~ 211 (454)
.+|. |+++| ||+ |+-|.++++.|+.
T Consensus 312 dprgnikvlmat-nrpdtldpallrpgrldrkv 343 (435)
T KOG0729|consen 312 DPRGNIKVLMAT-NRPDTLDPALLRPGRLDRKV 343 (435)
T ss_pred CCCCCeEEEeec-CCCCCcCHhhcCCcccccce
Confidence 2454 66666 665 6777788888753
No 468
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9e-07 Score=85.05 Aligned_cols=143 Identities=21% Similarity=0.320 Sum_probs=85.8
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHH-HHHHHHHhhhhhcccchhhhhhccccCCCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKI-NEHMHRLWKNQVAEKSLRSSISGWITNLPFD 117 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~-~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~ 117 (454)
...+|+|+.+|||+|+|||.+.++.+...... |..-. .+.+... ++.
T Consensus 201 gi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT-----------FLKLAgPQLVQMf---IGd------------------ 248 (424)
T KOG0652|consen 201 GIRPPKGVLMYGPPGTGKTLMARACAAQTNAT-----------FLKLAGPQLVQMF---IGD------------------ 248 (424)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHHhccch-----------HHHhcchHHHhhh---hcc------------------
Confidence 56789999999999999999999987765321 11000 0000000 000
Q ss_pred hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--C---------CCHHHHHHHHHHHHHHH-
Q 012882 118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--T---------VDVFAIVALSGIVSRLL- 185 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~---------lD~~~a~~L~~ll~~L~- 185 (454)
+.++ ..+ ...+|++ +.|.|+++||.. + -|..-+.-+.++|..|-
T Consensus 249 ---------GAkL-----VRD-AFaLAKE---------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 249 ---------GAKL-----VRD-AFALAKE---------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred ---------hHHH-----HHH-HHHHhhc---------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 0000 001 1334544 569999999986 3 24444555666666662
Q ss_pred -h--CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhh
Q 012882 186 -S--TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRL 237 (454)
Q Consensus 186 -~--~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~ 237 (454)
. ..+-+|+..||. |+-|..+++.|+.-.| ...+++-|.+-+.++..++|-..
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeEL 369 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEEL 369 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHH
Confidence 1 234566666764 8888889999876544 24556667777777777777654
No 469
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1e-06 Score=94.51 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=89.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
+.+.+.|+.||||+|||||.|..+++...+- .-..|.+.+. +.+-|+.-.|.
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~---~fisvKGPEl---L~KyIGaSEq~---------------------- 748 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNL---RFISVKGPEL---LSKYIGASEQN---------------------- 748 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCe---eEEEecCHHH---HHHHhcccHHH----------------------
Confidence 4456899999999999999999999886641 1223322221 12222221100
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC------CCCH--HHHHHHHHHHHHHHh----
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ------TVDV--FAIVALSGIVSRLLS---- 186 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~------~lD~--~~a~~L~~ll~~L~~---- 186 (454)
..+ +. . ||-...|+||+||||. |.|. .+-+.+.++|.+|-.
T Consensus 749 -----------------vR~-lF--~-------rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 749 -----------------VRD-LF--E-------RAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred -----------------HHH-HH--H-------HhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 000 01 1 1112679999999996 2332 133467778888742
Q ss_pred CCcEEEEecCCC----ccchhcCCchhhhhHHH------HHHHHhhccccccCCchhhhhhc
Q 012882 187 TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 187 ~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~------I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.|+.+++...|+ |+-|.+++++|-.++|+ +++++.-..-+.++...|+....
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a 863 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA 863 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence 367444444443 77888899999888764 56777777777788888887643
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.41 E-value=1.8e-06 Score=76.69 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=30.9
Q ss_pred cCCcEEEeeCCC-CCCH----------HHHHHHHHHHHHHHhCCc-EEEEecCCCcc
Q 012882 156 RGASILCFDEIQ-TVDV----------FAIVALSGIVSRLLSTGT-VLVATSNRAPW 200 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~----------~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~ 200 (454)
.+++++++||++ .++. .....+.+++..+.+.|. +++++|.....
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 689999999999 3333 335667777766666677 67777665433
No 471
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.40 E-value=1.6e-06 Score=98.53 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=42.1
Q ss_pred hhhccCC---cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGA---SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p---~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+| +|++||||+ +||+.+...|.++|.++.++|. ||++|||.
T Consensus 843 raL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~ 893 (943)
T PRK00349 843 KELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL 893 (943)
T ss_pred HHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 5778888 999999999 8999999999999999988877 99999984
No 472
>PRK04195 replication factor C large subunit; Provisional
Probab=98.40 E-value=8.9e-07 Score=94.43 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=44.4
Q ss_pred CceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 1 MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|.|.++|+|.+++.-.| .=...+.+..++.....+ .+++.++|+||+|+||||++++++..+.
T Consensus 2 ~~W~eKyrP~~l~dlvg----~~~~~~~l~~~l~~~~~g-~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVG----NEKAKEQLREWIESWLKG-KPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCchhhcCCCCHHHhcC----CHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999988655 111113344444322111 2378999999999999999999988763
No 473
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.39 E-value=7.1e-07 Score=94.83 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=26.8
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.+.|+|+.|+||+|||||++.+++++...
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 346799999999999999999999999764
No 474
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.35 E-value=2.6e-07 Score=87.84 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=32.8
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
..++++||||+. .||...+..+.++|..+.+...+||+||+.
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~ 199 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNP 199 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-H
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 678999999999 899999999999999987654599999873
No 475
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=3.6e-07 Score=96.87 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=41.5
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|..+|+|.+++.-.|. +.+ .+.+.+.+.. ...|.++.|+||+|+||||++++|+..+.
T Consensus 4 l~~kyRP~~~~divGq--~~i--~~~L~~~i~~----~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQ--DHV--KKLIINALKK----NSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred hHHHHCCCCHHHccCc--HHH--HHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7889999999998772 111 1223333322 23567899999999999999999988764
No 476
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.34 E-value=2.7e-06 Score=81.34 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=35.2
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHH-HHHHHhC-Cc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGI-VSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L~~~-G~-vlV~ThN~ 197 (454)
.++.+++||||. ++++.+...+... ++.|.+. |. ++++||+.
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 679999999999 8999987777766 6777765 77 99999985
No 477
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=1.7e-06 Score=86.65 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=37.9
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|.++|+|.+++.-.|.- .-.+.+..++.. .....++|+||+|+||||+++.+++.+.
T Consensus 7 w~~kyrP~~~~~~~g~~----~~~~~l~~~i~~-----~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQE----EIVERLKSYVKE-----KNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cchhhCCCcHHHhcCcH----HHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 99999998777654311 001223333322 1223589999999999999999998764
No 478
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.30 E-value=3e-06 Score=81.13 Aligned_cols=45 Identities=22% Similarity=0.393 Sum_probs=36.0
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCcc
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPW 200 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~ 200 (454)
.++++|++||.+.++......|..++..+.+.|. ++++|++.+|.
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 3578999999997777778889999988887777 67777776553
No 479
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.30 E-value=1.8e-06 Score=91.93 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=26.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+|+|++|+||+|||||++.+++++.+.
T Consensus 213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 213 LKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45789999999999999999999999774
No 480
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.4e-06 Score=85.58 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=27.3
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|++||||+|+|||.+.++++....
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg 191 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMG 191 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcC
Confidence 567899999999999999999999988764
No 481
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=1.2e-06 Score=99.96 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=102.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH--HH-HHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--KI-NEHMHRLWKN--QVAEKSLRSSI-SGWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~--~~-~~~i~~~~~~--~~~~~t~~e~l-~~~~~~ 113 (454)
.++++-+.+.|++|||||||+++++|.++......+++++++.-. .. ++.+.+..+. ..+.+|+++.+ |...-.
T Consensus 138 ~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck 217 (1391)
T KOG0065|consen 138 IKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCK 217 (1391)
T ss_pred EcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhcc
Confidence 356777999999999999999999998864434445777765321 11 2334455444 56788999887 332211
Q ss_pred CC---CC-hH-------HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882 114 LP---FD-SK-------VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI 174 (454)
Q Consensus 114 ~~---~~-~~-------~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a 174 (454)
.+ .+ .+ ..+.++..+++....+. -.-....+.+++++ .+++.++.++|.||++ +||..++
T Consensus 218 ~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT-~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTa 296 (1391)
T KOG0065|consen 218 GPGSRYDEVSRREKLAAMTDYLLKILGLDHCADT-LVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTA 296 (1391)
T ss_pred CCccccccccHHHHHHHHHHHHHHHhCchhhccc-eecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHH
Confidence 11 11 12 23456666666442110 00122334445554 3778999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-Cc-EEEEecCCCc
Q 012882 175 VALSGIVSRLLST-GT-VLVATSNRAP 199 (454)
Q Consensus 175 ~~L~~ll~~L~~~-G~-vlV~ThN~~P 199 (454)
-++.+.++.+... +. ++|+-+...|
T Consensus 297 l~iik~lr~~a~~~~~t~~vsi~Q~s~ 323 (1391)
T KOG0065|consen 297 FQIIKALRQLAHITGATALVSILQPSP 323 (1391)
T ss_pred HHHHHHHHHHHhhhcceEEEEeccCCh
Confidence 9999999998754 44 5555555443
No 482
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1e-06 Score=94.47 Aligned_cols=143 Identities=23% Similarity=0.323 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 120 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~ 120 (454)
.-|+|+.|+||+|+|||+|.++.+|...-+. ..+.+.+|.. +.-.++.- +
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF---f~iSGS~FVe-mfVGvGAs--------------------------R 230 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSISGSDFVE-MFVGVGAS--------------------------R 230 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCc---eeccchhhhh-hhcCCCcH--------------------------H
Confidence 5799999999999999999999999875221 1222233321 11000000 0
Q ss_pred HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCH----------HHHHHHHHHHHHHH--h-
Q 012882 121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDV----------FAIVALSGIVSRLL--S- 186 (454)
Q Consensus 121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~----------~~a~~L~~ll~~L~--~- 186 (454)
++ + +..-|++ +.|+|+++||+. +-.. .-...|.+++.++= .
T Consensus 231 VR---------------d-LF~qAkk---------~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 231 VR---------------D-LFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred HH---------------H-HHHHhhc---------cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 00 0 0111222 459999999996 2111 11234666666662 2
Q ss_pred -CCcEEEEecCCC----ccchhcCCchhhhhHHH------HHHHHhhccccccCCchhhhhhc
Q 012882 187 -TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 187 -~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~------I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.|+++++.+||+ |+-|.++++.|+...+. -.+++-|.+-+.++..+|+....
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iA 348 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA 348 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHh
Confidence 467888999998 78888899988766532 35677777788888888998743
No 483
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.9e-06 Score=93.05 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=39.4
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.++|+|.+++.-.|.= .+ .+.+.+++.. ...+..+.|+|+.|+||||+.++|+..+.
T Consensus 6 LarKYRPqtFdEVIGQe--~V--v~~L~~aL~~----gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 6 LARKWRPKDFASLVGQE--HV--VRALTHALDG----GRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHhCCCcHHHHcCcH--HH--HHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56789999998876510 00 0123333332 13467888999999999999999988664
No 484
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.22 E-value=2.3e-06 Score=89.35 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=87.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhc-ccchhhhhh-----ccccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVA-EKSLRSSIS-----GWITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~-~~t~~e~l~-----~~~~~ 113 (454)
..++.-+.|.||||||||+|.++|.|.-| +.. +..+-.. ...+.+++|..+- ..|.++.+. .....
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWP--vy~-g~L~~P~-----~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~ 576 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWP--VYN-GLLSIPR-----PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR 576 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCc--ccC-CeeecCC-----CcceEeccCCCccCcCcccceeecCCcHHHHHh
Confidence 35567799999999999999999999776 211 1111110 1124455544211 112222210 00011
Q ss_pred CCCChHHHHHHHHHHhhhhH---HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC---CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQE---VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ---TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~---~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~---~lD~~~a~~L~~l 180 (454)
..+.+...+.++....+..- ...-+.+....+.++++. |.+.++|+.-+|||.| ..|+.. .+
T Consensus 577 kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~-----~i 651 (728)
T KOG0064|consen 577 KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEG-----KI 651 (728)
T ss_pred cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHH-----HH
Confidence 12222334444444444321 111233344444555543 6778999999999999 367654 34
Q ss_pred HHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882 181 VSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 236 (454)
Q Consensus 181 l~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~ 236 (454)
++.....|. .|-+|| || .+.+-|...++.++..-|+.
T Consensus 652 ~~~ak~~gi~llsith-rp------------------slwk~h~~ll~~dg~g~~q~ 689 (728)
T KOG0064|consen 652 FQAAKDAGISLLSITH-RP------------------SLWKYHTHLLEFDGEGGWQF 689 (728)
T ss_pred HHHHHhcCceEEEeec-Cc------------------cHHHHHHHHHhccCCCCeee
Confidence 566666788 444555 42 23445556666677655654
No 485
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.21 E-value=1.3e-05 Score=73.86 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=34.9
Q ss_pred cCCcEEEeeCCC-CCC---HHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 156 RGASILCFDEIQ-TVD---VFAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD---~~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
.+|+++++|||+ .+| ......+.+++..+.+.|+ +++++|+..
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 579999999999 677 6677788889999988888 666776543
No 486
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.19 E-value=4.4e-06 Score=93.60 Aligned_cols=30 Identities=37% Similarity=0.634 Sum_probs=26.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|++|+||+|||||||++++++.+.
T Consensus 208 gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 346789999999999999999999998774
No 487
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.19 E-value=2.7e-05 Score=66.38 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+..++|+||+|+||||++..++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 46799999999999999999999875
No 488
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.18 E-value=2e-06 Score=84.58 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=38.1
Q ss_pred ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
-|+++|+|..+..-.+ ++.....+.+.... ....-+.+|||+|+|||+...+|+..+-+
T Consensus 25 swteKYrPkt~de~~g--------Qe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAG--------QEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHhCCCcHHhhcc--------hHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 4788888888877654 22221111111001 23456889999999999999999987753
No 489
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.8e-06 Score=90.19 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=56.7
Q ss_pred cCCcEEEeeCCCC--------CCHHH--HHHHHHHHHHHH---h---CCcEEEEecCCC----ccchhcCCchhhhhH--
Q 012882 156 RGASILCFDEIQT--------VDVFA--IVALSGIVSRLL---S---TGTVLVATSNRA----PWDLNQDGMQREIFQ-- 213 (454)
Q Consensus 156 ~~p~lL~LDEp~~--------lD~~~--a~~L~~ll~~L~---~---~G~vlV~ThN~~----P~dLy~~~l~r~~F~-- 213 (454)
..|+||+|||... -|... -+.+.++|.+|- + +++.+|..+||| |+-|.++++++-.|+
T Consensus 763 A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~ 842 (953)
T KOG0736|consen 763 AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGP 842 (953)
T ss_pred cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecC
Confidence 5799999999852 22222 235666666662 1 356788888986 566666666553332
Q ss_pred -----HHHHHHHhhccccccCCchhhhhhcc
Q 012882 214 -----KLVAKLEKHCEIIPIGSEVDYRRLIA 239 (454)
Q Consensus 214 -----~~I~~L~~~~~vv~l~~~~DyR~~~~ 239 (454)
.-..+|++..+-+.++..+|.+....
T Consensus 843 ~~d~esk~~vL~AlTrkFkLdedVdL~eiAk 873 (953)
T KOG0736|consen 843 NEDAESKLRVLEALTRKFKLDEDVDLVEIAK 873 (953)
T ss_pred CccHHHHHHHHHHHHHHccCCCCcCHHHHHh
Confidence 34577888889999999999997653
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.8e-06 Score=89.48 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=40.1
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|..+|+|.+++.-.|.-- .+ ..+.+++.. ...+..+.|+||.|+||||++++|+..+.
T Consensus 8 L~~KyRP~~f~dvVGQe~-iv---~~L~~~i~~----~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDL-AI---GALQNALKS----GKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred hHHHhCCCCHHHHhChHH-HH---HHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 667899999988766110 00 123333332 12456789999999999999999998774
No 491
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.16 E-value=1e-05 Score=84.73 Aligned_cols=60 Identities=27% Similarity=0.461 Sum_probs=40.6
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|.++|+|.+++.-.|.- ..+.....+.+++.. ..+..++|+||+|+|||||+++++....
T Consensus 2 la~~~RP~~l~d~vGq~-~~v~~~~~L~~~i~~-----~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 2 LAERMRPKTLDEVVGQE-HLLGPGKPLRRMIEA-----GRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred hhhhhCCCCHHHhcCcH-HHhCcchHHHHHHHc-----CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 67889998888765521 122222334444432 2345799999999999999999987653
No 492
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.1e-06 Score=81.14 Aligned_cols=30 Identities=40% Similarity=0.675 Sum_probs=27.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+||.|||++|+|||.|.++.++...
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 457899999999999999999999999875
No 493
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.15 E-value=6.3e-06 Score=83.83 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
......||||+|+|||||.++|++.+.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhC
Confidence 346789999999999999999999774
No 494
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8.1e-06 Score=87.33 Aligned_cols=30 Identities=37% Similarity=0.603 Sum_probs=26.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|+.|+||+|||||+|.++++....
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~ 301 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESR 301 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999999998553
No 495
>PRK13695 putative NTPase; Provisional
Probab=98.12 E-value=1.3e-05 Score=73.57 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=28.1
Q ss_pred ccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 155 QRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 155 ~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
+.+|++|++|||..++..+ ..+.+.+..+.+.|. +|+++|+
T Consensus 94 l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred cCCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECc
Confidence 3689999999986544444 345566666666777 6777765
No 496
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.2e-06 Score=84.83 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=38.5
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.++|+|.+++.-.|.=. + .+.+.+.+.. ...|..+.|+||.|+||||++++++..+.
T Consensus 6 l~~kyrP~~~~~iiGq~~--~--~~~l~~~~~~----~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKH--I--VTAISNGLSL----GRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHHhCCCchhhccChHH--H--HHHHHHHHHc----CCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 567899988887655100 0 0112233221 13567889999999999999999988664
No 497
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.12 E-value=1.1e-05 Score=77.54 Aligned_cols=35 Identities=31% Similarity=0.582 Sum_probs=26.8
Q ss_pred hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHH
Q 012882 27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY 64 (454)
Q Consensus 27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~ 64 (454)
..++.+++. ..+.+.-+.+.|++|+|||+|...|.
T Consensus 12 ~~LD~~l~g---G~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 12 EELDRKLGG---GIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred HHHHHhhCC---CCcCCcEEEEECCCCCChHHHHHHHH
Confidence 346666543 34566779999999999999999984
No 498
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.5e-06 Score=90.42 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=40.0
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|..+|+|.+++.-.|. +.+ .+.+.+.+.. ...+..+.|+||.|+||||+.++|+..+.
T Consensus 6 LarKYRPqtFddVIGQ--e~v--v~~L~~al~~----gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 6 LARKWRPRDFTTLVGQ--EHV--VRALTHALEQ----QRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHhCCCcHHHHcCc--HHH--HHHHHHHHHh----CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678999999887661 000 0123333332 23567889999999999999999998664
No 499
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.11 E-value=1e-05 Score=89.17 Aligned_cols=28 Identities=36% Similarity=0.678 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|+|++|+||+||||||+++++++.+.
T Consensus 183 ~~~~gill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999998774
No 500
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.7e-06 Score=91.75 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=39.1
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|.++|+|.+++.-.|.-. + .+.+.+++.. ...+..+.|+||.|+||||++++|+..+.
T Consensus 6 LaeKyRP~tFddIIGQe~--I--v~~LknaI~~----~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 6 LARKWRPATFEQMVGQSH--V--LHALTNALTQ----QRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHHHhCCCCHHHhcCcHH--H--HHHHHHHHHh----CCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 567899988887655100 0 0113333332 13466778999999999999999998775
Done!