Query 012882
Match_columns 454
No_of_seqs 412 out of 3032
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g6h_A High-affinity branched- 99.8 1.7E-18 5.7E-23 167.9 11.4 157 40-205 30-221 (257)
2 3gfo_A Cobalt import ATP-bindi 99.8 6.5E-19 2.2E-23 172.5 7.9 157 41-206 32-213 (275)
3 1b0u_A Histidine permease; ABC 99.7 6.3E-19 2.2E-23 171.4 6.5 150 40-197 29-213 (262)
4 2olj_A Amino acid ABC transpor 99.7 1.7E-18 5.7E-23 168.6 9.2 149 40-197 47-219 (263)
5 3tui_C Methionine import ATP-b 99.7 7.7E-19 2.6E-23 177.9 5.9 149 40-197 51-224 (366)
6 3tif_A Uncharacterized ABC tra 99.7 4.5E-18 1.5E-22 162.8 10.9 149 41-197 29-206 (235)
7 1vpl_A ABC transporter, ATP-bi 99.7 1.6E-18 5.5E-23 168.0 7.7 149 40-197 38-206 (256)
8 2pcj_A ABC transporter, lipopr 99.7 3.7E-18 1.3E-22 162.2 9.5 148 41-197 28-200 (224)
9 2yz2_A Putative ABC transporte 99.7 3E-18 1E-22 167.0 9.1 156 41-205 31-206 (266)
10 1ji0_A ABC transporter; ATP bi 99.7 3.2E-18 1.1E-22 164.3 8.2 148 41-197 30-199 (240)
11 1sgw_A Putative ABC transporte 99.7 6.3E-19 2.2E-23 166.5 3.2 151 41-201 33-197 (214)
12 2qi9_C Vitamin B12 import ATP- 99.7 2.3E-18 7.9E-23 166.3 6.5 146 41-197 24-193 (249)
13 3fvq_A Fe(3+) IONS import ATP- 99.7 1.2E-18 4.1E-23 176.3 3.4 148 41-197 28-199 (359)
14 4g1u_C Hemin import ATP-bindin 99.7 5.9E-18 2E-22 164.9 7.7 149 40-197 34-208 (266)
15 3rlf_A Maltose/maltodextrin im 99.7 1.1E-18 3.8E-23 177.7 2.0 148 41-197 27-194 (381)
16 2onk_A Molybdate/tungstate ABC 99.7 1.1E-18 3.7E-23 167.7 1.3 147 41-197 23-187 (240)
17 2ff7_A Alpha-hemolysin translo 99.7 2.8E-17 9.6E-22 158.4 11.0 152 41-198 33-205 (247)
18 3d31_A Sulfate/molybdate ABC t 99.7 5.8E-18 2E-22 170.9 6.3 147 41-197 24-188 (348)
19 2ihy_A ABC transporter, ATP-bi 99.7 3.8E-18 1.3E-22 167.4 4.7 151 40-199 44-225 (279)
20 2nq2_C Hypothetical ABC transp 99.7 3.8E-18 1.3E-22 165.1 3.8 141 41-197 29-189 (253)
21 2yyz_A Sugar ABC transporter, 99.7 1.1E-17 3.7E-22 169.6 6.0 148 41-197 27-194 (359)
22 1oxx_K GLCV, glucose, ABC tran 99.7 2.8E-18 9.7E-23 173.6 1.6 148 41-197 29-201 (353)
23 1z47_A CYSA, putative ABC-tran 99.7 6.7E-18 2.3E-22 170.8 4.3 148 41-197 39-206 (355)
24 1v43_A Sugar-binding transport 99.7 1.5E-17 5.3E-22 169.2 5.7 148 41-197 35-202 (372)
25 1g29_1 MALK, maltose transport 99.7 5.6E-18 1.9E-22 172.5 1.8 148 41-197 27-200 (372)
26 2it1_A 362AA long hypothetical 99.7 1.3E-17 4.4E-22 169.1 3.9 148 41-197 27-194 (362)
27 2ixe_A Antigen peptide transpo 99.7 1.7E-16 5.9E-21 155.0 11.3 154 40-197 42-217 (271)
28 3nh6_A ATP-binding cassette SU 99.7 1.6E-16 5.3E-21 157.8 10.0 153 40-197 77-249 (306)
29 2d2e_A SUFC protein; ABC-ATPas 99.7 4.6E-17 1.6E-21 157.2 5.4 149 41-198 27-204 (250)
30 2ghi_A Transport protein; mult 99.6 5.7E-16 1.9E-20 150.4 11.3 151 40-197 43-214 (260)
31 2pjz_A Hypothetical protein ST 99.6 4.7E-17 1.6E-21 158.3 3.6 145 40-197 28-185 (263)
32 1mv5_A LMRA, multidrug resista 99.6 2.2E-17 7.5E-22 158.7 0.9 154 41-197 26-198 (243)
33 2zu0_C Probable ATP-dependent 99.6 1.3E-16 4.4E-21 155.5 5.0 153 40-198 43-225 (267)
34 2cbz_A Multidrug resistance-as 99.6 2.8E-16 9.5E-21 150.5 4.7 145 41-199 29-191 (237)
35 2pze_A Cystic fibrosis transme 99.6 4.6E-16 1.6E-20 148.2 5.1 142 41-197 32-190 (229)
36 3gd7_A Fusion complex of cysti 99.6 5.3E-16 1.8E-20 158.8 4.9 176 40-233 44-239 (390)
37 3b5x_A Lipid A export ATP-bind 99.6 3.1E-15 1E-19 161.0 10.3 155 40-197 366-539 (582)
38 2bbs_A Cystic fibrosis transme 99.6 1.7E-15 5.9E-20 149.3 6.3 142 40-197 61-219 (290)
39 2yl4_A ATP-binding cassette SU 99.6 4.6E-15 1.6E-19 160.0 9.1 154 40-196 367-541 (595)
40 3b60_A Lipid A export ATP-bind 99.5 7.1E-15 2.4E-19 158.2 9.0 153 40-197 366-539 (582)
41 3qf4_B Uncharacterized ABC tra 99.5 1.1E-14 3.8E-19 157.1 10.5 152 40-197 378-550 (598)
42 3ozx_A RNAse L inhibitor; ATP 99.5 1.6E-15 5.5E-20 161.5 3.7 142 41-197 292-446 (538)
43 3bk7_A ABC transporter ATP-bin 99.5 1.1E-15 3.7E-20 165.0 1.9 141 41-197 380-532 (607)
44 3ec2_A DNA replication protein 99.5 1.8E-14 6.3E-19 131.0 9.7 73 156-228 99-179 (180)
45 1yqt_A RNAse L inhibitor; ATP- 99.5 9E-16 3.1E-20 163.6 0.2 141 41-197 310-462 (538)
46 3qf4_A ABC transporter, ATP-bi 99.5 1.1E-14 3.6E-19 156.9 7.9 152 40-197 366-538 (587)
47 4a82_A Cystic fibrosis transme 99.5 1.6E-14 5.4E-19 155.3 8.7 154 40-198 364-537 (578)
48 3j16_B RLI1P; ribosome recycli 99.5 6.2E-15 2.1E-19 158.9 3.9 138 44-197 379-528 (608)
49 3bk7_A ABC transporter ATP-bin 99.5 1.3E-14 4.4E-19 156.6 5.6 147 40-198 114-289 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.5 1.4E-14 4.9E-19 154.4 4.8 47 152-198 171-219 (538)
51 3ozx_A RNAse L inhibitor; ATP 99.5 3.6E-14 1.2E-18 151.2 6.7 46 152-198 151-198 (538)
52 3j16_B RLI1P; ribosome recycli 99.4 4.2E-14 1.4E-18 152.4 6.3 151 40-199 100-283 (608)
53 3g5u_A MCG1178, multidrug resi 99.4 1.3E-13 4.4E-18 160.4 5.7 157 39-199 1055-1232(1284)
54 3g5u_A MCG1178, multidrug resi 99.4 9.3E-13 3.2E-17 153.3 9.8 152 40-197 413-585 (1284)
55 2w58_A DNAI, primosome compone 99.3 6E-13 2.1E-17 122.9 5.9 78 157-235 115-202 (202)
56 4f4c_A Multidrug resistance pr 99.3 1.3E-13 4.6E-18 160.7 1.7 157 40-197 1102-1276(1321)
57 2iw3_A Elongation factor 3A; a 99.3 2.5E-12 8.6E-17 144.3 9.3 135 40-198 458-606 (986)
58 3ux8_A Excinuclease ABC, A sub 99.3 9.4E-13 3.2E-17 143.9 5.0 46 152-197 215-264 (670)
59 2iw3_A Elongation factor 3A; a 99.3 3.6E-12 1.2E-16 143.0 7.3 44 152-197 914-958 (986)
60 3b85_A Phosphate starvation-in 99.3 3.9E-13 1.3E-17 126.1 -0.4 44 152-201 117-162 (208)
61 4f4c_A Multidrug resistance pr 99.3 8.4E-12 2.9E-16 145.6 10.5 154 40-198 441-614 (1321)
62 4gp7_A Metallophosphoesterase; 99.3 2.5E-12 8.6E-17 116.4 4.4 46 152-197 96-159 (171)
63 2kjq_A DNAA-related protein; s 99.2 4.2E-12 1.4E-16 112.7 5.0 49 156-204 82-131 (149)
64 1ye8_A Protein THEP1, hypothet 99.2 2.6E-12 9.1E-17 117.5 2.3 61 154-230 96-162 (178)
65 2qgz_A Helicase loader, putati 99.2 5.5E-12 1.9E-16 125.1 2.9 80 156-236 213-301 (308)
66 3ux8_A Excinuclease ABC, A sub 99.1 3.2E-11 1.1E-15 131.8 6.9 46 152-197 556-606 (670)
67 1znw_A Guanylate kinase, GMP k 99.1 1.2E-12 4.1E-17 122.0 -4.4 46 152-197 136-188 (207)
68 4aby_A DNA repair protein RECN 99.1 1.8E-10 6E-15 118.1 10.7 44 152-196 308-355 (415)
69 1sxj_E Activator 1 40 kDa subu 99.1 1.7E-10 5.8E-15 115.3 9.5 61 155-231 132-193 (354)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 5E-10 1.7E-14 113.6 12.2 42 156-197 302-345 (365)
71 2ehv_A Hypothetical protein PH 99.1 1E-10 3.6E-15 110.7 6.7 45 156-200 134-185 (251)
72 4b4t_J 26S protease regulatory 99.0 8.5E-10 2.9E-14 112.8 9.3 141 39-238 178-347 (405)
73 2npi_A Protein CLP1; CLP1-PCF1 99.0 1.4E-11 4.9E-16 128.6 -3.9 139 41-197 136-298 (460)
74 2vf7_A UVRA2, excinuclease ABC 99.0 3.3E-10 1.1E-14 125.8 5.9 46 152-197 743-793 (842)
75 2o8b_B DNA mismatch repair pro 99.0 4.1E-10 1.4E-14 127.9 6.5 120 43-198 789-913 (1022)
76 3pih_A Uvrabc system protein A 99.0 2.1E-09 7.1E-14 120.4 11.8 46 152-197 818-868 (916)
77 4a74_A DNA repair and recombin 99.0 7.1E-10 2.4E-14 103.6 6.8 38 27-67 12-49 (231)
78 4b4t_L 26S protease subunit RP 98.9 3.9E-09 1.3E-13 109.3 10.7 145 39-238 211-380 (437)
79 4b4t_M 26S protease regulatory 98.9 2.1E-09 7.2E-14 111.1 8.2 145 39-238 211-380 (434)
80 2ygr_A Uvrabc system protein A 98.9 4.6E-09 1.6E-13 117.7 11.1 46 152-197 876-926 (993)
81 2r6f_A Excinuclease ABC subuni 98.9 2.3E-09 7.9E-14 119.7 8.3 46 152-197 858-908 (972)
82 3thx_A DNA mismatch repair pro 98.9 7.9E-09 2.7E-13 116.1 12.6 45 155-199 739-787 (934)
83 4b4t_I 26S protease regulatory 98.9 3.9E-09 1.3E-13 108.5 9.2 141 39-238 212-381 (437)
84 3qkt_A DNA double-strand break 98.9 2E-08 6.9E-13 100.6 14.0 46 152-197 267-314 (339)
85 3sop_A Neuronal-specific septi 98.9 8E-10 2.7E-14 107.6 3.5 135 45-196 4-149 (270)
86 3thx_B DNA mismatch repair pro 98.9 3.8E-09 1.3E-13 118.4 9.1 44 155-198 750-797 (918)
87 4b4t_K 26S protease regulatory 98.8 9.9E-09 3.4E-13 106.0 10.1 145 39-238 202-372 (428)
88 4b4t_H 26S protease regulatory 98.8 8E-09 2.7E-13 107.1 9.4 145 39-238 239-408 (467)
89 1l8q_A Chromosomal replication 98.8 1.8E-08 6.2E-13 99.7 11.7 48 156-203 97-146 (324)
90 2z4s_A Chromosomal replication 98.8 1.8E-08 6.2E-13 104.6 11.5 47 157-203 194-242 (440)
91 1cr0_A DNA primase/helicase; R 98.8 5.6E-09 1.9E-13 102.2 5.6 45 153-197 143-197 (296)
92 2eyu_A Twitching motility prot 98.7 3.1E-09 1.1E-13 102.8 3.4 28 41-68 23-50 (261)
93 1tf7_A KAIC; homohexamer, hexa 98.7 1.6E-08 5.5E-13 107.2 8.6 139 40-199 36-187 (525)
94 1e69_A Chromosome segregation 98.7 2.8E-08 9.5E-13 98.8 9.6 41 156-197 240-282 (322)
95 2w0m_A SSO2452; RECA, SSPF, un 98.7 2.4E-08 8.2E-13 92.9 8.4 42 156-197 120-168 (235)
96 1tq4_A IIGP1, interferon-induc 98.7 1.1E-09 3.7E-14 112.8 -1.1 144 44-198 70-236 (413)
97 1s96_A Guanylate kinase, GMP k 98.7 2.9E-09 1E-13 100.4 1.8 29 41-69 14-42 (219)
98 1wb9_A DNA mismatch repair pro 98.7 2E-08 6.8E-13 111.4 8.4 43 155-197 684-730 (800)
99 1nlf_A Regulatory protein REPA 98.7 2.7E-08 9.3E-13 96.6 7.3 46 153-198 129-182 (279)
100 1ewq_A DNA mismatch repair pro 98.6 6.8E-09 2.3E-13 114.6 2.9 25 43-67 576-600 (765)
101 3jvv_A Twitching mobility prot 98.6 8.7E-09 3E-13 104.1 3.4 25 44-68 124-148 (356)
102 3b9q_A Chloroplast SRP recepto 98.6 1.7E-08 5.8E-13 99.7 4.5 28 41-68 98-125 (302)
103 1tf7_A KAIC; homohexamer, hexa 98.6 4.8E-08 1.7E-12 103.6 8.2 44 153-197 367-417 (525)
104 3bos_A Putative DNA replicatio 98.6 2.1E-08 7.2E-13 93.6 4.8 48 156-203 103-153 (242)
105 2pt7_A CAG-ALFA; ATPase, prote 98.6 1.6E-08 5.4E-13 101.2 3.8 28 42-69 170-197 (330)
106 2ce7_A Cell division protein F 98.6 1E-07 3.4E-12 99.9 9.2 29 40-68 46-74 (476)
107 3szr_A Interferon-induced GTP- 98.6 6.5E-09 2.2E-13 112.2 0.2 46 155-200 144-199 (608)
108 1pzn_A RAD51, DNA repair and r 98.6 1.9E-07 6.6E-12 93.9 10.3 37 28-67 119-155 (349)
109 3co5_A Putative two-component 98.5 1.1E-07 3.6E-12 83.2 7.0 49 157-206 75-123 (143)
110 2og2_A Putative signal recogni 98.5 5.3E-08 1.8E-12 98.4 5.2 28 41-68 155-182 (359)
111 3cf0_A Transitional endoplasmi 98.5 8.5E-08 2.9E-12 94.3 6.4 29 40-68 46-74 (301)
112 2x8a_A Nuclear valosin-contain 98.5 3.3E-07 1.1E-11 89.1 10.1 29 40-68 41-69 (274)
113 2cvh_A DNA repair and recombin 98.5 4.1E-07 1.4E-11 84.0 9.8 35 28-65 8-42 (220)
114 1n0w_A DNA repair protein RAD5 98.5 9.3E-07 3.2E-11 82.9 11.6 37 27-66 11-47 (243)
115 2qz4_A Paraplegin; AAA+, SPG7, 98.4 8.3E-07 2.9E-11 84.3 10.4 28 41-68 37-64 (262)
116 3cf2_A TER ATPase, transitiona 98.4 3.4E-07 1.1E-11 101.3 8.2 30 39-68 234-263 (806)
117 3h4m_A Proteasome-activating n 98.4 2.3E-07 7.7E-12 89.7 5.9 28 41-68 49-76 (285)
118 3n70_A Transport activator; si 98.4 4.1E-07 1.4E-11 79.5 6.9 52 157-209 76-127 (145)
119 3t15_A Ribulose bisphosphate c 98.4 1.1E-06 3.7E-11 86.1 10.6 30 39-68 32-61 (293)
120 2chg_A Replication factor C sm 98.4 6.7E-07 2.3E-11 81.7 8.1 41 156-197 101-141 (226)
121 2ewv_A Twitching motility prot 98.4 8.6E-08 2.9E-12 97.4 2.2 28 41-68 134-161 (372)
122 3u61_B DNA polymerase accessor 98.3 6.4E-07 2.2E-11 88.3 7.8 61 156-231 104-165 (324)
123 1ixz_A ATP-dependent metallopr 98.3 1.3E-06 4.4E-11 83.1 9.3 28 41-68 47-74 (254)
124 3aez_A Pantothenate kinase; tr 98.3 1.7E-07 5.7E-12 93.0 3.0 30 40-69 87-116 (312)
125 1sxj_C Activator 1 40 kDa subu 98.3 5.5E-07 1.9E-11 89.7 6.6 58 2-68 14-71 (340)
126 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.9E-06 6.3E-11 85.6 10.3 27 41-67 43-69 (322)
127 3asz_A Uridine kinase; cytidin 98.3 3.8E-09 1.3E-13 97.8 -8.7 45 152-196 106-160 (211)
128 1lw7_A Transcriptional regulat 98.3 3.3E-07 1.1E-11 92.5 4.1 27 43-69 170-196 (365)
129 3cf2_A TER ATPase, transitiona 98.3 1.4E-07 4.6E-12 104.4 1.2 30 39-68 507-536 (806)
130 2bbw_A Adenylate kinase 4, AK4 98.3 1.2E-07 4.2E-12 90.1 0.7 35 152-186 158-198 (246)
131 2dhr_A FTSH; AAA+ protein, hex 98.3 2.9E-06 9.9E-11 89.3 11.2 29 40-68 61-89 (499)
132 1rj9_A FTSY, signal recognitio 98.3 5.9E-07 2E-11 88.7 5.4 28 42-69 101-128 (304)
133 3eie_A Vacuolar protein sortin 98.3 1.5E-06 5E-11 86.2 8.0 28 41-68 49-76 (322)
134 2p65_A Hypothetical protein PF 98.3 2.4E-07 8.4E-12 82.6 2.1 26 42-67 42-67 (187)
135 1sxj_D Activator 1 41 kDa subu 98.2 6.7E-07 2.3E-11 88.7 4.9 59 157-230 133-191 (353)
136 1iy2_A ATP-dependent metallopr 98.2 2.9E-06 1E-10 82.0 8.6 28 41-68 71-98 (278)
137 3lda_A DNA repair protein RAD5 98.2 1.9E-06 6.6E-11 88.2 7.4 39 27-68 165-205 (400)
138 2qnr_A Septin-2, protein NEDD5 98.2 1.2E-06 4.2E-11 86.2 5.4 25 44-68 19-44 (301)
139 1lv7_A FTSH; alpha/beta domain 98.1 5.4E-06 1.9E-10 78.9 9.1 28 41-68 43-70 (257)
140 2i3b_A HCR-ntpase, human cance 98.1 2.8E-07 9.7E-12 84.7 0.1 25 44-68 2-26 (189)
141 2qp9_X Vacuolar protein sortin 98.1 2.2E-06 7.7E-11 86.2 6.6 28 41-68 82-109 (355)
142 1iqp_A RFCS; clamp loader, ext 98.1 1.8E-06 6.2E-11 84.4 5.8 57 2-67 14-70 (327)
143 3b9p_A CG5977-PA, isoform A; A 98.1 7.6E-06 2.6E-10 79.5 10.2 27 42-68 53-79 (297)
144 1fnn_A CDC6P, cell division co 98.1 5.6E-06 1.9E-10 82.9 9.4 42 156-197 124-168 (389)
145 1njg_A DNA polymerase III subu 98.1 1E-06 3.5E-11 81.2 3.7 26 42-67 44-69 (250)
146 1f2t_B RAD50 ABC-ATPase; DNA d 98.1 2.2E-06 7.6E-11 75.7 5.6 46 152-197 76-123 (148)
147 2bjv_A PSP operon transcriptio 98.1 6.3E-06 2.1E-10 78.8 9.2 48 157-204 100-157 (265)
148 3pvs_A Replication-associated 98.1 3.1E-06 1.1E-10 87.9 6.9 60 3-68 16-75 (447)
149 2zan_A Vacuolar protein sortin 98.1 3.4E-06 1.2E-10 87.5 6.8 27 41-67 165-191 (444)
150 3hu3_A Transitional endoplasmi 98.1 6.6E-06 2.3E-10 86.4 9.0 29 40-68 235-263 (489)
151 1sxj_A Activator 1 95 kDa subu 98.1 5.8E-06 2E-10 87.4 8.4 26 42-67 76-101 (516)
152 1jbk_A CLPB protein; beta barr 98.1 2.2E-06 7.7E-11 76.2 4.3 26 42-67 42-67 (195)
153 2obl_A ESCN; ATPase, hydrolase 98.1 9.8E-06 3.3E-10 81.4 9.2 30 40-69 68-97 (347)
154 2v1u_A Cell division control p 98.0 3.8E-06 1.3E-10 83.9 6.1 27 41-67 42-68 (387)
155 3d8b_A Fidgetin-like protein 1 98.0 4.5E-06 1.5E-10 84.0 6.3 28 41-68 115-142 (357)
156 3pfi_A Holliday junction ATP-d 98.0 4.9E-06 1.7E-10 82.4 6.1 28 41-68 53-80 (338)
157 2qag_C Septin-7; cell cycle, c 98.0 1.3E-05 4.4E-10 82.6 9.0 25 44-68 32-56 (418)
158 2dpy_A FLII, flagellum-specifi 98.0 6.2E-06 2.1E-10 85.4 6.4 31 39-69 153-183 (438)
159 3vfd_A Spastin; ATPase, microt 98.0 1.2E-05 4.1E-10 81.6 8.4 27 42-68 147-173 (389)
160 2chq_A Replication factor C sm 98.0 1.3E-06 4.4E-11 85.1 1.0 54 2-67 6-62 (319)
161 3e70_C DPA, signal recognition 98.0 1.2E-05 4.2E-10 80.1 8.0 28 41-68 127-154 (328)
162 1sxj_B Activator 1 37 kDa subu 98.0 3.3E-06 1.1E-10 82.4 3.7 60 157-231 107-166 (323)
163 2qby_A CDC6 homolog 1, cell di 98.0 3.8E-06 1.3E-10 83.8 4.0 28 41-68 43-70 (386)
164 4fcw_A Chaperone protein CLPB; 97.9 1.6E-05 5.3E-10 77.5 7.7 44 157-200 119-172 (311)
165 1ojl_A Transcriptional regulat 97.9 2.2E-05 7.5E-10 77.2 8.7 50 157-206 96-155 (304)
166 1d2n_A N-ethylmaleimide-sensit 97.9 7.4E-06 2.5E-10 78.7 4.7 27 41-67 62-88 (272)
167 2dr3_A UPF0273 protein PH0284; 97.9 2.8E-05 9.7E-10 72.7 8.5 42 156-197 127-173 (247)
168 3m6a_A ATP-dependent protease 97.9 6E-06 2.1E-10 87.8 4.2 27 42-68 107-133 (543)
169 1ypw_A Transitional endoplasmi 97.9 5.7E-05 1.9E-09 84.0 12.1 30 39-68 234-263 (806)
170 3syl_A Protein CBBX; photosynt 97.9 1.2E-05 4E-10 78.4 5.5 27 41-67 65-91 (309)
171 1jr3_A DNA polymerase III subu 97.8 1.3E-05 4.3E-10 80.0 5.4 55 3-68 6-63 (373)
172 2zr9_A Protein RECA, recombina 97.8 3.8E-05 1.3E-09 77.1 8.6 38 27-67 47-85 (349)
173 1hqc_A RUVB; extended AAA-ATPa 97.8 1.5E-05 5E-10 78.1 4.4 26 42-67 37-62 (324)
174 1htw_A HI0065; nucleotide-bind 97.7 1.6E-05 5.6E-10 70.8 3.7 28 41-68 31-58 (158)
175 2gza_A Type IV secretion syste 97.7 1.7E-05 5.7E-10 80.1 3.6 28 42-69 174-201 (361)
176 1ypw_A Transitional endoplasmi 97.6 1.3E-06 4.3E-11 97.3 -6.3 29 40-68 508-536 (806)
177 3tr0_A Guanylate kinase, GMP k 97.6 2.7E-05 9.2E-10 71.0 3.7 27 42-68 6-32 (205)
178 3te6_A Regulatory protein SIR3 97.6 0.0002 6.7E-09 71.0 9.8 27 41-67 43-69 (318)
179 2qby_B CDC6 homolog 3, cell di 97.6 4E-05 1.4E-09 76.6 4.6 27 41-67 43-69 (384)
180 3a00_A Guanylate kinase, GMP k 97.6 2.3E-05 7.8E-10 71.1 2.5 26 43-68 1-26 (186)
181 3pxg_A Negative regulator of g 97.5 9.7E-05 3.3E-09 77.0 6.5 26 42-67 200-225 (468)
182 3pxi_A Negative regulator of g 97.5 0.00013 4.4E-09 80.5 7.8 46 156-201 578-633 (758)
183 3uk6_A RUVB-like 2; hexameric 97.5 0.00025 8.7E-09 70.6 8.9 27 42-68 69-95 (368)
184 1z6g_A Guanylate kinase; struc 97.5 4.3E-05 1.5E-09 71.3 2.9 28 41-68 21-48 (218)
185 2r44_A Uncharacterized protein 97.4 0.0001 3.4E-09 72.7 5.4 26 43-68 46-71 (331)
186 1lvg_A Guanylate kinase, GMP k 97.4 4.9E-05 1.7E-09 69.8 2.8 27 42-68 3-29 (198)
187 1ls1_A Signal recognition part 97.4 0.00057 1.9E-08 66.9 10.4 27 42-68 97-123 (295)
188 1a5t_A Delta prime, HOLB; zinc 97.4 0.00026 8.8E-09 70.3 8.0 27 42-68 23-49 (334)
189 1kgd_A CASK, peripheral plasma 97.4 7.7E-05 2.6E-09 67.2 3.8 27 42-68 4-30 (180)
190 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 0.00011 3.9E-09 77.1 5.6 27 42-68 40-66 (500)
191 1zp6_A Hypothetical protein AT 97.4 8.4E-05 2.9E-09 67.0 3.9 26 41-66 7-32 (191)
192 2ygr_A Uvrabc system protein A 97.4 0.00018 6.1E-09 80.9 7.0 46 152-197 534-583 (993)
193 3pih_A Uvrabc system protein A 97.4 9.6E-05 3.3E-09 82.9 4.4 46 152-197 477-526 (916)
194 3hr8_A Protein RECA; alpha and 97.4 0.00075 2.6E-08 67.9 10.5 38 27-67 47-85 (356)
195 1nij_A Hypothetical protein YJ 97.4 5.1E-05 1.7E-09 75.1 1.9 24 44-67 5-28 (318)
196 2px0_A Flagellar biosynthesis 97.3 0.00018 6E-09 70.6 5.6 27 42-68 104-130 (296)
197 3c8u_A Fructokinase; YP_612366 97.3 0.0001 3.5E-09 67.9 3.5 42 41-82 20-61 (208)
198 2r6f_A Excinuclease ABC subuni 97.3 0.00016 5.3E-09 81.1 5.0 46 152-197 517-566 (972)
199 2vf7_A UVRA2, excinuclease ABC 97.3 0.00018 6.2E-09 80.0 5.1 46 152-197 392-441 (842)
200 3lnc_A Guanylate kinase, GMP k 97.3 8.9E-05 3E-09 69.4 2.2 27 41-67 25-52 (231)
201 1qvr_A CLPB protein; coiled co 97.2 0.00016 5.4E-09 80.9 4.4 25 44-68 589-613 (854)
202 1vma_A Cell division protein F 97.2 0.0011 3.6E-08 65.4 9.6 28 41-68 102-129 (306)
203 1qvr_A CLPB protein; coiled co 97.2 0.0005 1.7E-08 76.8 8.0 26 42-67 190-215 (854)
204 3tau_A Guanylate kinase, GMP k 97.2 0.00022 7.7E-09 65.7 4.4 28 42-69 7-34 (208)
205 3kta_B Chromosome segregation 97.2 0.00038 1.3E-08 62.9 5.7 41 156-196 85-126 (173)
206 1um8_A ATP-dependent CLP prote 97.2 0.0004 1.4E-08 69.8 6.6 27 42-68 71-97 (376)
207 2fna_A Conserved hypothetical 97.2 0.00078 2.7E-08 66.0 8.5 40 22-67 15-54 (357)
208 4eun_A Thermoresistant glucoki 97.2 0.0002 6.9E-09 65.4 3.7 27 41-67 27-53 (200)
209 2v9p_A Replication protein E1; 97.2 0.0002 6.9E-09 70.5 3.8 29 39-67 122-150 (305)
210 2j41_A Guanylate kinase; GMP, 97.2 0.00024 8.4E-09 64.5 4.0 27 42-68 5-31 (207)
211 1r6b_X CLPA protein; AAA+, N-t 97.1 0.00067 2.3E-08 74.7 8.2 25 44-68 489-513 (758)
212 2r6a_A DNAB helicase, replicat 97.1 0.0014 4.7E-08 67.9 10.0 28 40-67 200-227 (454)
213 3kl4_A SRP54, signal recogniti 97.1 0.0014 4.9E-08 67.5 9.8 41 156-196 178-222 (433)
214 2jeo_A Uridine-cytidine kinase 97.1 0.00025 8.6E-09 67.0 3.8 28 40-67 22-49 (245)
215 4ad8_A DNA repair protein RECN 97.1 0.00032 1.1E-08 74.0 4.7 44 152-196 410-457 (517)
216 1g5t_A COB(I)alamin adenosyltr 97.1 9.7E-05 3.3E-09 68.1 0.6 39 43-84 27-66 (196)
217 3ney_A 55 kDa erythrocyte memb 97.1 0.0003 1E-08 64.9 3.9 29 40-68 16-44 (197)
218 2bdt_A BH3686; alpha-beta prot 97.1 0.00025 8.7E-09 63.9 3.1 24 44-67 3-26 (189)
219 3kta_A Chromosome segregation 97.1 0.0003 1E-08 62.9 3.5 26 44-69 27-52 (182)
220 1kag_A SKI, shikimate kinase I 97.0 0.00024 8.3E-09 62.8 2.8 26 43-68 4-29 (173)
221 1sq5_A Pantothenate kinase; P- 97.0 0.00036 1.2E-08 68.6 4.3 28 41-68 78-105 (308)
222 3uie_A Adenylyl-sulfate kinase 97.0 0.00038 1.3E-08 63.6 3.8 28 41-68 23-50 (200)
223 1in4_A RUVB, holliday junction 97.0 0.00028 9.7E-09 70.0 3.2 27 42-68 50-76 (334)
224 3pxi_A Negative regulator of g 97.0 0.00073 2.5E-08 74.5 6.5 26 42-67 200-225 (758)
225 2orw_A Thymidine kinase; TMTK, 97.0 0.0003 1E-08 64.0 2.8 36 157-196 76-112 (184)
226 1knq_A Gluconate kinase; ALFA/ 97.0 0.00049 1.7E-08 61.1 4.1 26 42-67 7-32 (175)
227 2vp4_A Deoxynucleoside kinase; 97.0 0.00037 1.3E-08 65.3 3.3 27 40-66 17-43 (230)
228 3euj_A Chromosome partition pr 96.9 0.00034 1.2E-08 73.1 3.1 28 41-69 28-55 (483)
229 2oap_1 GSPE-2, type II secreti 96.9 0.00048 1.7E-08 72.6 4.2 28 42-69 259-286 (511)
230 3auy_A DNA double-strand break 96.9 0.00064 2.2E-08 68.5 4.8 45 153-197 300-346 (371)
231 3k1j_A LON protease, ATP-depen 96.9 0.003 1E-07 67.8 10.1 28 42-69 59-86 (604)
232 2qen_A Walker-type ATPase; unk 96.9 0.0035 1.2E-07 61.2 9.7 42 22-67 14-55 (350)
233 3cmu_A Protein RECA, recombina 96.8 0.0022 7.5E-08 76.9 9.0 37 28-67 1414-1451(2050)
234 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0031 1.1E-07 62.4 8.6 25 42-66 122-146 (331)
235 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0014 4.6E-08 72.2 6.6 26 42-67 206-231 (758)
236 1w5s_A Origin recognition comp 96.8 0.00068 2.3E-08 68.2 3.8 26 42-67 49-76 (412)
237 2xau_A PRE-mRNA-splicing facto 96.8 0.0023 7.9E-08 70.7 8.1 24 43-66 109-132 (773)
238 2qag_B Septin-6, protein NEDD5 96.7 0.00064 2.2E-08 69.9 3.3 27 41-67 38-66 (427)
239 2b8t_A Thymidine kinase; deoxy 96.7 0.00056 1.9E-08 64.3 2.6 37 157-197 89-126 (223)
240 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00093 3.2E-08 58.5 3.7 23 43-65 23-45 (149)
241 2ius_A DNA translocase FTSK; n 96.7 0.0056 1.9E-07 64.4 10.2 22 44-65 168-189 (512)
242 1p9r_A General secretion pathw 96.7 0.001 3.5E-08 68.3 4.3 26 44-69 168-193 (418)
243 2r62_A Cell division protease 96.7 0.00043 1.5E-08 65.8 1.3 27 41-67 42-68 (268)
244 4akg_A Glutathione S-transfera 96.7 0.0034 1.2E-07 77.5 9.3 39 42-82 1266-1304(2695)
245 1u0l_A Probable GTPase ENGC; p 96.7 0.00094 3.2E-08 65.4 3.7 27 43-69 169-195 (301)
246 1qhl_A Protein (cell division 96.6 0.00026 8.8E-09 66.8 -0.4 25 45-69 29-53 (227)
247 1w4r_A Thymidine kinase; type 96.6 0.0019 6.3E-08 59.4 5.1 37 156-197 90-127 (195)
248 1rz3_A Hypothetical protein rb 96.6 0.0013 4.3E-08 60.2 4.0 28 41-68 20-47 (201)
249 1svm_A Large T antigen; AAA+ f 96.6 0.0012 4.1E-08 66.9 4.0 29 40-68 166-194 (377)
250 1u94_A RECA protein, recombina 96.6 0.0068 2.3E-07 60.8 9.5 38 27-67 49-87 (356)
251 2yhs_A FTSY, cell division pro 96.6 0.0012 4.1E-08 69.1 4.0 29 40-68 290-318 (503)
252 2qt1_A Nicotinamide riboside k 96.6 0.0016 5.5E-08 59.5 4.4 28 41-68 19-46 (207)
253 3tqc_A Pantothenate kinase; bi 96.6 0.0014 4.8E-08 65.0 4.2 28 41-68 90-117 (321)
254 1jjv_A Dephospho-COA kinase; P 96.6 0.0013 4.3E-08 60.0 3.6 22 44-65 3-24 (206)
255 1cke_A CK, MSSA, protein (cyti 96.5 0.0013 4.3E-08 60.8 3.5 25 43-67 5-29 (227)
256 4e22_A Cytidylate kinase; P-lo 96.5 0.0014 4.9E-08 62.2 3.9 25 42-66 26-50 (252)
257 3vaa_A Shikimate kinase, SK; s 96.5 0.0014 4.8E-08 59.7 3.7 27 41-67 23-49 (199)
258 1v5w_A DMC1, meiotic recombina 96.5 0.011 3.8E-07 58.8 10.5 36 28-66 110-145 (343)
259 2rcn_A Probable GTPase ENGC; Y 96.5 0.0014 4.8E-08 65.9 3.9 27 42-68 214-240 (358)
260 1oix_A RAS-related protein RAB 96.5 0.0012 4E-08 59.6 3.0 25 44-68 30-54 (191)
261 2f9l_A RAB11B, member RAS onco 96.5 0.0012 4.2E-08 59.6 3.1 24 44-67 6-29 (199)
262 2qm8_A GTPase/ATPase; G protei 96.5 0.0012 4.2E-08 65.7 3.3 38 41-79 53-90 (337)
263 2if2_A Dephospho-COA kinase; a 96.5 0.0013 4.3E-08 59.9 3.0 22 45-67 3-24 (204)
264 2r8r_A Sensor protein; KDPD, P 96.4 0.0011 3.7E-08 62.4 2.4 44 156-199 83-128 (228)
265 1w1w_A Structural maintenance 96.4 0.0028 9.5E-08 65.0 5.6 41 156-196 354-396 (430)
266 2f1r_A Molybdopterin-guanine d 96.4 0.001 3.4E-08 59.9 1.9 25 44-68 3-27 (171)
267 2yv5_A YJEQ protein; hydrolase 96.4 0.0022 7.4E-08 62.8 4.5 27 42-69 164-190 (302)
268 3llm_A ATP-dependent RNA helic 96.4 0.0088 3E-07 55.8 8.4 22 43-64 76-97 (235)
269 1w1w_A Structural maintenance 96.4 0.0019 6.4E-08 66.3 3.9 28 42-69 25-52 (430)
270 2qor_A Guanylate kinase; phosp 96.3 0.0017 5.9E-08 59.3 3.2 27 42-68 11-37 (204)
271 3qks_A DNA double-strand break 96.3 0.0023 7.8E-08 58.9 3.7 25 43-67 23-47 (203)
272 1pui_A ENGB, probable GTP-bind 96.3 0.0012 4.1E-08 59.9 1.8 27 41-67 24-50 (210)
273 1qhx_A CPT, protein (chloramph 96.3 0.0022 7.6E-08 56.7 3.4 26 43-68 3-28 (178)
274 3t61_A Gluconokinase; PSI-biol 96.3 0.0018 6.1E-08 58.9 2.8 25 43-67 18-42 (202)
275 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0025 8.6E-08 59.5 3.6 61 156-228 100-161 (219)
276 2pez_A Bifunctional 3'-phospho 96.2 0.003 1E-07 56.2 3.8 26 42-67 4-29 (179)
277 2z43_A DNA repair and recombin 96.2 0.0098 3.4E-07 58.6 7.8 37 28-67 95-131 (324)
278 1xp8_A RECA protein, recombina 96.2 0.013 4.4E-07 59.0 8.7 38 27-66 60-97 (366)
279 1t9h_A YLOQ, probable GTPase E 96.2 0.0011 3.8E-08 65.3 0.9 27 42-68 172-198 (307)
280 2o5v_A DNA replication and rep 96.1 0.0029 1E-07 63.6 3.7 21 45-65 28-48 (359)
281 2yvu_A Probable adenylyl-sulfa 96.1 0.0045 1.5E-07 55.4 4.3 28 41-68 11-38 (186)
282 3kb2_A SPBC2 prophage-derived 96.1 0.0029 1E-07 55.3 3.0 23 45-67 3-25 (173)
283 1ofh_A ATP-dependent HSL prote 96.0 0.0031 1.1E-07 60.7 3.3 27 42-68 49-75 (310)
284 1y63_A LMAJ004144AAA protein; 96.0 0.0044 1.5E-07 55.6 4.0 26 41-66 8-33 (184)
285 3dm5_A SRP54, signal recogniti 96.0 0.058 2E-06 55.6 12.7 27 42-68 99-125 (443)
286 3e1s_A Exodeoxyribonuclease V, 96.0 0.0047 1.6E-07 66.0 4.7 25 43-67 204-228 (574)
287 1ly1_A Polynucleotide kinase; 96.0 0.0042 1.5E-07 54.7 3.6 23 43-65 2-24 (181)
288 1odf_A YGR205W, hypothetical 3 95.9 0.0049 1.7E-07 60.1 4.2 28 41-68 29-56 (290)
289 1xx6_A Thymidine kinase; NESG, 95.9 0.0064 2.2E-07 55.6 4.7 36 157-196 81-117 (191)
290 2gno_A DNA polymerase III, gam 95.9 0.014 4.6E-07 57.3 7.2 23 43-65 18-40 (305)
291 2c9o_A RUVB-like 1; hexameric 95.9 0.0047 1.6E-07 63.8 4.1 28 41-68 61-88 (456)
292 2o5v_A DNA replication and rep 95.9 0.0047 1.6E-07 62.1 3.9 38 156-195 291-329 (359)
293 2rhm_A Putative kinase; P-loop 95.9 0.0055 1.9E-07 54.7 4.0 26 42-67 4-29 (193)
294 2wji_A Ferrous iron transport 95.9 0.0041 1.4E-07 54.3 3.0 24 44-67 4-27 (165)
295 3trf_A Shikimate kinase, SK; a 95.8 0.0048 1.7E-07 54.9 3.5 25 43-67 5-29 (185)
296 3lw7_A Adenylate kinase relate 95.8 0.0042 1.4E-07 54.1 2.9 23 44-67 2-24 (179)
297 2p5t_B PEZT; postsegregational 95.8 0.0045 1.5E-07 58.7 3.4 29 40-68 29-57 (253)
298 3cm0_A Adenylate kinase; ATP-b 95.8 0.0047 1.6E-07 55.0 3.2 25 43-67 4-28 (186)
299 3hws_A ATP-dependent CLP prote 95.8 0.0044 1.5E-07 61.8 3.2 28 41-68 49-76 (363)
300 1ex7_A Guanylate kinase; subst 95.7 0.0048 1.6E-07 56.2 3.0 23 46-68 4-26 (186)
301 1m7g_A Adenylylsulfate kinase; 95.7 0.0068 2.3E-07 55.6 3.9 28 41-68 23-50 (211)
302 2j9r_A Thymidine kinase; TK1, 95.7 0.0078 2.7E-07 56.0 4.3 61 157-229 101-162 (214)
303 3iij_A Coilin-interacting nucl 95.7 0.0063 2.2E-07 54.0 3.6 26 42-67 10-35 (180)
304 3cmu_A Protein RECA, recombina 95.7 0.012 4.1E-07 70.7 6.9 27 40-66 1078-1104(2050)
305 3nwj_A ATSK2; P loop, shikimat 95.6 0.0051 1.7E-07 58.6 3.0 26 43-68 48-73 (250)
306 1via_A Shikimate kinase; struc 95.6 0.0056 1.9E-07 54.2 3.1 23 45-67 6-28 (175)
307 2wjg_A FEOB, ferrous iron tran 95.6 0.0072 2.5E-07 53.4 3.7 24 43-66 7-30 (188)
308 3cr8_A Sulfate adenylyltranfer 95.6 0.0046 1.6E-07 65.7 2.8 27 42-68 368-394 (552)
309 2jaq_A Deoxyguanosine kinase; 95.6 0.0061 2.1E-07 54.8 3.1 24 45-68 2-25 (205)
310 1kht_A Adenylate kinase; phosp 95.5 0.0074 2.5E-07 53.6 3.5 25 43-67 3-27 (192)
311 2zej_A Dardarin, leucine-rich 95.5 0.0057 1.9E-07 54.4 2.8 22 45-66 4-25 (184)
312 1ny5_A Transcriptional regulat 95.5 0.032 1.1E-06 56.4 8.6 54 157-210 231-294 (387)
313 1tue_A Replication protein E1; 95.5 0.0063 2.2E-07 56.4 3.0 27 42-68 57-83 (212)
314 1gvn_B Zeta; postsegregational 95.5 0.0072 2.5E-07 58.6 3.6 29 40-68 30-58 (287)
315 1uf9_A TT1252 protein; P-loop, 95.5 0.0084 2.9E-07 54.0 3.8 26 41-66 6-31 (203)
316 2gj8_A MNME, tRNA modification 95.5 0.0078 2.7E-07 53.1 3.5 25 43-67 4-28 (172)
317 1g41_A Heat shock protein HSLU 95.5 0.0061 2.1E-07 63.0 3.0 28 41-68 48-75 (444)
318 1q3t_A Cytidylate kinase; nucl 95.5 0.0085 2.9E-07 55.9 3.8 27 41-67 14-40 (236)
319 1tev_A UMP-CMP kinase; ploop, 95.5 0.0085 2.9E-07 53.3 3.6 25 43-67 3-27 (196)
320 2vli_A Antibiotic resistance p 95.4 0.0053 1.8E-07 54.4 2.1 27 42-68 4-30 (183)
321 1ni3_A YCHF GTPase, YCHF GTP-b 95.4 0.0082 2.8E-07 61.0 3.7 39 157-196 139-181 (392)
322 2v54_A DTMP kinase, thymidylat 95.3 0.011 3.8E-07 53.2 4.0 25 43-67 4-28 (204)
323 2c95_A Adenylate kinase 1; tra 95.3 0.0099 3.4E-07 53.1 3.6 26 42-67 8-33 (196)
324 2ze6_A Isopentenyl transferase 95.3 0.0093 3.2E-07 56.6 3.5 24 45-68 3-26 (253)
325 1ukz_A Uridylate kinase; trans 95.3 0.013 4.5E-07 53.0 4.3 27 41-67 13-39 (203)
326 2cdn_A Adenylate kinase; phosp 95.3 0.012 4.2E-07 53.2 4.1 27 41-67 18-44 (201)
327 1nks_A Adenylate kinase; therm 95.2 0.0087 3E-07 53.2 3.0 24 45-68 3-26 (194)
328 2www_A Methylmalonic aciduria 95.2 0.011 3.7E-07 59.1 3.9 27 42-68 73-99 (349)
329 2plr_A DTMP kinase, probable t 95.2 0.012 4E-07 53.3 3.8 26 43-68 4-29 (213)
330 3upu_A ATP-dependent DNA helic 95.2 0.018 6.1E-07 59.5 5.6 23 45-67 47-69 (459)
331 1vht_A Dephospho-COA kinase; s 95.2 0.011 3.8E-07 54.2 3.6 23 43-65 4-26 (218)
332 3iev_A GTP-binding protein ERA 95.2 0.01 3.5E-07 58.0 3.4 26 41-66 7-33 (308)
333 3auy_A DNA double-strand break 95.2 0.011 3.6E-07 59.5 3.6 43 319-364 302-345 (371)
334 1u0j_A DNA replication protein 95.2 0.012 4.2E-07 56.6 3.8 27 42-68 103-129 (267)
335 2wwf_A Thymidilate kinase, put 95.1 0.014 4.9E-07 52.8 4.1 26 42-67 9-34 (212)
336 1qf9_A UMP/CMP kinase, protein 95.1 0.012 4E-07 52.3 3.5 26 42-67 5-30 (194)
337 4akg_A Glutathione S-transfera 95.1 0.098 3.3E-06 64.8 12.4 27 42-68 644-670 (2695)
338 2bwj_A Adenylate kinase 5; pho 95.1 0.012 4E-07 52.8 3.4 25 43-67 12-36 (199)
339 3cmw_A Protein RECA, recombina 95.1 0.025 8.5E-07 67.1 6.8 28 40-67 729-756 (1706)
340 1np6_A Molybdopterin-guanine d 95.0 0.013 4.3E-07 52.7 3.4 25 43-67 6-30 (174)
341 3umf_A Adenylate kinase; rossm 95.0 0.016 5.6E-07 54.0 4.2 27 41-67 27-53 (217)
342 2q6t_A DNAB replication FORK h 95.0 0.11 3.7E-06 53.4 10.8 28 40-67 197-224 (444)
343 4eaq_A DTMP kinase, thymidylat 95.0 0.017 5.7E-07 54.1 4.2 27 42-68 25-51 (229)
344 3cmw_A Protein RECA, recombina 95.0 0.021 7.3E-07 67.7 6.0 78 295-372 1460-1577(1706)
345 1zak_A Adenylate kinase; ATP:A 95.0 0.012 3.9E-07 54.3 3.0 26 42-67 4-29 (222)
346 3fb4_A Adenylate kinase; psych 95.0 0.012 4.1E-07 53.8 3.1 22 46-67 3-24 (216)
347 1nn5_A Similar to deoxythymidy 95.0 0.015 5E-07 52.8 3.6 26 42-67 8-33 (215)
348 1g8p_A Magnesium-chelatase 38 94.9 0.0047 1.6E-07 60.6 0.3 26 43-68 45-70 (350)
349 1e6c_A Shikimate kinase; phosp 94.9 0.013 4.4E-07 51.3 3.1 24 44-67 3-26 (173)
350 3r20_A Cytidylate kinase; stru 94.9 0.014 4.9E-07 55.0 3.5 26 42-67 8-33 (233)
351 1ega_A Protein (GTP-binding pr 94.9 0.012 4E-07 57.5 3.1 22 45-66 10-31 (301)
352 2z0h_A DTMP kinase, thymidylat 94.9 0.013 4.6E-07 52.3 3.1 22 46-67 3-24 (197)
353 1aky_A Adenylate kinase; ATP:A 94.9 0.016 5.6E-07 53.2 3.7 26 42-67 3-28 (220)
354 1udx_A The GTP-binding protein 94.9 0.0092 3.1E-07 61.1 2.2 24 44-67 158-181 (416)
355 3dl0_A Adenylate kinase; phosp 94.8 0.013 4.6E-07 53.5 3.1 22 46-67 3-24 (216)
356 1zuh_A Shikimate kinase; alpha 94.8 0.016 5.4E-07 50.8 3.4 25 43-67 7-31 (168)
357 3lxx_A GTPase IMAP family memb 94.8 0.014 4.7E-07 54.4 3.2 27 42-68 28-54 (239)
358 1zd8_A GTP:AMP phosphotransfer 94.8 0.015 5.2E-07 53.7 3.4 26 42-67 6-31 (227)
359 3k53_A Ferrous iron transport 94.8 0.013 4.5E-07 55.9 3.0 24 44-67 4-27 (271)
360 1gtv_A TMK, thymidylate kinase 94.7 0.0075 2.6E-07 54.8 1.0 24 45-68 2-25 (214)
361 3tlx_A Adenylate kinase 2; str 94.7 0.019 6.6E-07 54.0 3.9 26 42-67 28-53 (243)
362 2f6r_A COA synthase, bifunctio 94.7 0.022 7.6E-07 54.9 4.4 25 41-65 73-97 (281)
363 2iyv_A Shikimate kinase, SK; t 94.7 0.016 5.3E-07 51.5 3.1 23 45-67 4-26 (184)
364 1fzq_A ADP-ribosylation factor 94.7 0.014 5E-07 51.6 2.8 25 42-66 15-39 (181)
365 2orv_A Thymidine kinase; TP4A 94.7 0.032 1.1E-06 52.5 5.2 36 156-196 89-125 (234)
366 2pbr_A DTMP kinase, thymidylat 94.7 0.016 5.5E-07 51.5 3.1 23 45-67 2-24 (195)
367 2pt5_A Shikimate kinase, SK; a 94.7 0.017 5.7E-07 50.4 3.1 23 45-67 2-24 (168)
368 1z2a_A RAS-related protein RAB 94.6 0.018 6E-07 49.5 3.1 23 44-66 6-28 (168)
369 2nzj_A GTP-binding protein REM 94.6 0.018 6.2E-07 49.9 3.1 24 44-67 5-28 (175)
370 2zts_A Putative uncharacterize 94.6 0.034 1.2E-06 51.4 5.1 34 28-64 18-51 (251)
371 2ce2_X GTPase HRAS; signaling 94.5 0.018 6.2E-07 49.0 2.9 23 45-67 5-27 (166)
372 1kao_A RAP2A; GTP-binding prot 94.5 0.019 6.6E-07 49.0 3.1 23 44-66 4-26 (167)
373 1zu4_A FTSY; GTPase, signal re 94.5 0.022 7.7E-07 56.1 3.9 28 41-68 103-130 (320)
374 2erx_A GTP-binding protein DI- 94.5 0.02 6.8E-07 49.3 3.2 23 44-66 4-26 (172)
375 3ake_A Cytidylate kinase; CMP 94.5 0.018 6.3E-07 51.9 3.1 23 45-67 4-26 (208)
376 2ged_A SR-beta, signal recogni 94.5 0.025 8.4E-07 50.2 3.8 26 42-67 47-72 (193)
377 1u8z_A RAS-related protein RAL 94.5 0.02 6.8E-07 48.9 3.1 23 44-66 5-27 (168)
378 2dyk_A GTP-binding protein; GT 94.5 0.023 8E-07 48.4 3.5 23 45-67 3-25 (161)
379 2ffh_A Protein (FFH); SRP54, s 94.5 0.19 6.4E-06 51.5 10.8 27 42-68 97-123 (425)
380 1z0j_A RAB-22, RAS-related pro 94.4 0.021 7.3E-07 49.1 3.1 24 44-67 7-30 (170)
381 2lkc_A Translation initiation 94.4 0.03 1E-06 48.7 4.1 25 42-66 7-31 (178)
382 4a1f_A DNAB helicase, replicat 94.4 0.1 3.5E-06 51.8 8.4 36 28-67 35-70 (338)
383 3q72_A GTP-binding protein RAD 94.4 0.017 5.8E-07 49.7 2.4 23 45-67 4-26 (166)
384 1ek0_A Protein (GTP-binding pr 94.3 0.022 7.5E-07 48.9 3.1 24 44-67 4-27 (170)
385 1xjc_A MOBB protein homolog; s 94.3 0.026 8.8E-07 50.6 3.5 25 43-67 4-28 (169)
386 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.022 7.6E-07 49.5 3.1 24 44-67 8-31 (177)
387 1c1y_A RAS-related protein RAP 94.3 0.022 7.6E-07 48.8 3.1 23 44-66 4-26 (167)
388 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.026 8.8E-07 53.6 3.8 25 43-67 4-28 (260)
389 1z08_A RAS-related protein RAB 94.3 0.023 7.8E-07 49.0 3.1 23 44-66 7-29 (170)
390 1g16_A RAS-related protein SEC 94.3 0.022 7.5E-07 49.0 2.9 24 44-67 4-27 (170)
391 2fn4_A P23, RAS-related protei 94.3 0.028 9.5E-07 48.9 3.6 24 43-66 9-32 (181)
392 3vkw_A Replicase large subunit 94.3 0.14 4.9E-06 52.6 9.4 25 41-65 159-183 (446)
393 1ky3_A GTP-binding protein YPT 94.3 0.024 8.1E-07 49.3 3.1 25 43-67 8-32 (182)
394 3q85_A GTP-binding protein REM 94.2 0.024 8.1E-07 48.9 3.0 22 45-66 4-25 (169)
395 1ak2_A Adenylate kinase isoenz 94.2 0.029 9.9E-07 52.1 3.8 26 42-67 15-40 (233)
396 3pqc_A Probable GTP-binding pr 94.2 0.034 1.2E-06 49.0 4.2 25 43-67 23-47 (195)
397 3tqf_A HPR(Ser) kinase; transf 94.2 0.027 9.4E-07 50.7 3.4 24 42-65 15-38 (181)
398 1svi_A GTP-binding protein YSX 94.2 0.03 1E-06 49.6 3.7 25 42-66 22-46 (195)
399 1uj2_A Uridine-cytidine kinase 94.2 0.027 9.1E-07 53.1 3.5 27 42-68 21-47 (252)
400 1r2q_A RAS-related protein RAB 94.2 0.025 8.6E-07 48.5 3.1 23 44-66 7-29 (170)
401 3io5_A Recombination and repai 94.2 0.13 4.4E-06 50.8 8.4 37 27-64 12-49 (333)
402 2p67_A LAO/AO transport system 94.2 0.027 9.4E-07 55.8 3.7 28 41-68 54-81 (341)
403 2ga8_A Hypothetical 39.9 kDa p 94.1 0.027 9.1E-07 56.4 3.5 25 43-67 24-48 (359)
404 1mky_A Probable GTP-binding pr 94.1 0.023 7.8E-07 58.4 3.1 25 43-67 180-204 (439)
405 2g6b_A RAS-related protein RAB 94.1 0.028 9.5E-07 49.0 3.3 25 43-67 10-34 (180)
406 3tw8_B RAS-related protein RAB 94.1 0.022 7.4E-07 49.6 2.6 24 43-66 9-32 (181)
407 2grj_A Dephospho-COA kinase; T 94.1 0.025 8.7E-07 51.5 3.1 24 43-66 12-35 (192)
408 2xb4_A Adenylate kinase; ATP-b 94.1 0.025 8.6E-07 52.3 3.1 23 45-67 2-24 (223)
409 3bc1_A RAS-related protein RAB 94.1 0.027 9.1E-07 49.5 3.1 24 43-66 11-34 (195)
410 3clv_A RAB5 protein, putative; 94.0 0.028 9.4E-07 49.7 3.1 24 43-66 7-30 (208)
411 1e4v_A Adenylate kinase; trans 94.0 0.025 8.6E-07 51.7 2.9 22 46-67 3-24 (214)
412 3b1v_A Ferrous iron uptake tra 94.0 0.026 8.9E-07 54.3 3.1 23 44-66 4-26 (272)
413 1ltq_A Polynucleotide kinase; 94.0 0.031 1E-06 53.8 3.6 25 43-67 2-26 (301)
414 2oil_A CATX-8, RAS-related pro 94.0 0.028 9.5E-07 49.9 3.1 24 44-67 26-49 (193)
415 4dsu_A GTPase KRAS, isoform 2B 94.0 0.029 9.8E-07 49.2 3.1 24 44-67 5-28 (189)
416 2hxs_A RAB-26, RAS-related pro 94.0 0.03 1E-06 48.6 3.2 24 43-66 6-29 (178)
417 1r8s_A ADP-ribosylation factor 93.9 0.03 1E-06 48.0 3.1 20 46-65 3-22 (164)
418 2cxx_A Probable GTP-binding pr 93.9 0.026 8.8E-07 49.7 2.7 23 45-67 3-25 (190)
419 2qmh_A HPR kinase/phosphorylas 93.9 0.031 1.1E-06 51.5 3.2 26 42-67 33-58 (205)
420 2qtf_A Protein HFLX, GTP-bindi 93.9 0.025 8.4E-07 56.9 2.8 24 44-67 180-203 (364)
421 2qag_A Septin-2, protein NEDD5 93.9 0.023 7.7E-07 57.0 2.5 24 44-67 38-61 (361)
422 1m2o_B GTP-binding protein SAR 93.9 0.028 9.7E-07 50.1 2.9 24 43-66 23-46 (190)
423 1z0f_A RAB14, member RAS oncog 93.9 0.031 1.1E-06 48.5 3.1 24 44-67 16-39 (179)
424 2y8e_A RAB-protein 6, GH09086P 93.9 0.029 1E-06 48.6 2.9 23 44-66 15-37 (179)
425 1f6b_A SAR1; gtpases, N-termin 93.9 0.021 7.1E-07 51.5 2.0 22 44-65 26-47 (198)
426 3t1o_A Gliding protein MGLA; G 93.8 0.035 1.2E-06 48.9 3.4 25 44-68 15-39 (198)
427 1upt_A ARL1, ADP-ribosylation 93.8 0.042 1.4E-06 47.3 3.8 25 42-66 6-30 (171)
428 2a9k_A RAS-related protein RAL 93.8 0.032 1.1E-06 48.7 3.1 24 43-66 18-41 (187)
429 3con_A GTPase NRAS; structural 93.8 0.033 1.1E-06 49.2 3.1 23 44-66 22-44 (190)
430 4ad8_A DNA repair protein RECN 93.8 0.015 5.2E-07 61.0 1.0 45 317-364 411-457 (517)
431 3crm_A TRNA delta(2)-isopenten 93.7 0.039 1.3E-06 54.6 3.8 27 42-68 4-30 (323)
432 3be4_A Adenylate kinase; malar 93.7 0.036 1.2E-06 50.9 3.4 25 43-67 5-29 (217)
433 2bme_A RAB4A, RAS-related prot 93.7 0.032 1.1E-06 49.0 2.9 25 43-67 10-34 (186)
434 4bas_A ADP-ribosylation factor 93.7 0.03 1E-06 49.7 2.7 25 42-66 16-40 (199)
435 2efe_B Small GTP-binding prote 93.7 0.035 1.2E-06 48.4 3.1 23 44-66 13-35 (181)
436 1moz_A ARL1, ADP-ribosylation 93.6 0.027 9.2E-07 49.3 2.3 24 42-65 17-40 (183)
437 3sr0_A Adenylate kinase; phosp 93.6 0.034 1.2E-06 51.2 3.1 22 46-67 3-24 (206)
438 1nrj_B SR-beta, signal recogni 93.6 0.044 1.5E-06 49.7 3.8 26 42-67 11-36 (218)
439 1w36_D RECD, exodeoxyribonucle 93.6 0.085 2.9E-06 56.5 6.5 24 43-66 164-187 (608)
440 1m7b_A RND3/RHOE small GTP-bin 93.6 0.034 1.2E-06 49.0 2.9 24 43-66 7-30 (184)
441 2gf9_A RAS-related protein RAB 93.6 0.036 1.2E-06 49.1 3.1 24 44-67 23-46 (189)
442 2bov_A RAla, RAS-related prote 93.6 0.036 1.2E-06 49.5 3.1 24 43-66 14-37 (206)
443 1vg8_A RAS-related protein RAB 93.5 0.038 1.3E-06 49.4 3.1 25 43-67 8-32 (207)
444 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.038 1.3E-06 48.3 3.1 23 44-66 6-28 (186)
445 2fg5_A RAB-22B, RAS-related pr 93.5 0.037 1.3E-06 49.3 3.0 24 44-67 24-47 (192)
446 2a5y_B CED-4; apoptosis; HET: 93.5 0.36 1.2E-05 50.8 11.0 24 42-65 151-174 (549)
447 2qu8_A Putative nucleolar GTP- 93.5 0.055 1.9E-06 49.7 4.2 25 42-66 28-52 (228)
448 3ihw_A Centg3; RAS, centaurin, 93.5 0.039 1.3E-06 49.0 3.1 23 44-66 21-43 (184)
449 3tkl_A RAS-related protein RAB 93.4 0.04 1.4E-06 48.7 3.1 24 44-67 17-40 (196)
450 2gf0_A GTP-binding protein DI- 93.4 0.04 1.4E-06 48.9 3.0 24 43-66 8-31 (199)
451 1zbd_A Rabphilin-3A; G protein 93.4 0.042 1.4E-06 49.2 3.1 24 44-67 9-32 (203)
452 3kkq_A RAS-related protein M-R 93.4 0.052 1.8E-06 47.5 3.7 24 43-66 18-41 (183)
453 2cjw_A GTP-binding protein GEM 93.4 0.042 1.4E-06 49.3 3.1 22 44-65 7-28 (192)
454 1z06_A RAS-related protein RAB 93.3 0.043 1.5E-06 48.5 3.1 23 44-66 21-43 (189)
455 3lxw_A GTPase IMAP family memb 93.3 0.041 1.4E-06 51.8 3.1 25 43-67 21-45 (247)
456 1ksh_A ARF-like protein 2; sma 93.3 0.039 1.3E-06 48.5 2.8 26 42-67 17-42 (186)
457 3bwd_D RAC-like GTP-binding pr 93.3 0.044 1.5E-06 47.8 3.1 25 43-67 8-32 (182)
458 1zd9_A ADP-ribosylation factor 93.3 0.044 1.5E-06 48.6 3.1 23 44-66 23-45 (188)
459 3dz8_A RAS-related protein RAB 93.3 0.042 1.4E-06 48.8 2.9 24 44-67 24-47 (191)
460 3iby_A Ferrous iron transport 93.2 0.045 1.5E-06 52.0 3.3 22 45-66 3-24 (256)
461 2a5j_A RAS-related protein RAB 93.2 0.045 1.5E-06 48.6 3.1 24 44-67 22-45 (191)
462 3oes_A GTPase rhebl1; small GT 93.2 0.043 1.5E-06 49.2 2.9 25 43-67 24-48 (201)
463 3a1s_A Iron(II) transport prot 93.2 0.044 1.5E-06 52.1 3.2 23 44-66 6-28 (258)
464 2e87_A Hypothetical protein PH 93.2 0.061 2.1E-06 53.5 4.3 26 42-67 166-191 (357)
465 2il1_A RAB12; G-protein, GDP, 93.2 0.038 1.3E-06 49.2 2.5 23 44-66 27-49 (192)
466 3t5g_A GTP-binding protein RHE 93.2 0.045 1.5E-06 47.8 2.9 22 44-65 7-28 (181)
467 3dzd_A Transcriptional regulat 93.2 0.085 2.9E-06 52.9 5.3 54 157-210 222-285 (368)
468 2bcg_Y Protein YP2, GTP-bindin 93.1 0.045 1.5E-06 49.1 2.9 23 44-66 9-31 (206)
469 2xtp_A GTPase IMAP family memb 93.1 0.055 1.9E-06 50.9 3.7 26 42-67 21-46 (260)
470 2atv_A RERG, RAS-like estrogen 93.1 0.048 1.7E-06 48.6 3.1 25 42-66 27-51 (196)
471 1zj6_A ADP-ribosylation factor 93.1 0.047 1.6E-06 48.2 3.0 25 42-66 15-39 (187)
472 2p5s_A RAS and EF-hand domain 93.1 0.048 1.6E-06 48.8 3.1 26 42-67 27-52 (199)
473 3reg_A RHO-like small GTPase; 93.1 0.048 1.7E-06 48.4 3.1 24 44-67 24-47 (194)
474 1x3s_A RAS-related protein RAB 93.1 0.049 1.7E-06 48.0 3.1 24 44-67 16-39 (195)
475 2o52_A RAS-related protein RAB 93.1 0.046 1.6E-06 49.1 2.9 24 43-66 25-48 (200)
476 3cbq_A GTP-binding protein REM 93.1 0.034 1.2E-06 50.0 2.0 22 44-65 24-45 (195)
477 3cph_A RAS-related protein SEC 93.1 0.049 1.7E-06 48.9 3.1 25 42-66 19-43 (213)
478 2ew1_A RAS-related protein RAB 93.0 0.047 1.6E-06 49.4 2.9 23 44-66 27-49 (201)
479 2iwr_A Centaurin gamma 1; ANK 93.0 0.039 1.3E-06 48.1 2.3 23 44-66 8-30 (178)
480 3t34_A Dynamin-related protein 93.0 0.045 1.5E-06 54.5 2.9 22 45-66 36-57 (360)
481 2ocp_A DGK, deoxyguanosine kin 93.0 0.054 1.9E-06 50.5 3.3 26 43-68 2-27 (241)
482 3c5c_A RAS-like protein 12; GD 92.9 0.053 1.8E-06 48.1 3.1 23 44-66 22-44 (187)
483 4dhe_A Probable GTP-binding pr 92.9 0.041 1.4E-06 50.0 2.4 26 42-67 28-53 (223)
484 2f7s_A C25KG, RAS-related prot 92.9 0.052 1.8E-06 49.1 3.1 24 44-67 26-49 (217)
485 3t5d_A Septin-7; GTP-binding p 92.9 0.044 1.5E-06 52.3 2.6 22 45-66 10-31 (274)
486 2h57_A ADP-ribosylation factor 92.9 0.037 1.3E-06 49.0 2.0 25 43-67 21-45 (190)
487 3i8s_A Ferrous iron transport 92.9 0.051 1.7E-06 52.0 3.0 24 44-67 4-27 (274)
488 2ohf_A Protein OLA1, GTP-bindi 92.8 0.05 1.7E-06 55.3 3.0 25 42-66 21-45 (396)
489 3zvl_A Bifunctional polynucleo 92.8 0.068 2.3E-06 54.5 4.1 27 41-67 256-282 (416)
490 2h92_A Cytidylate kinase; ross 92.8 0.053 1.8E-06 49.5 3.0 25 43-67 3-27 (219)
491 2h17_A ADP-ribosylation factor 92.8 0.056 1.9E-06 47.5 3.0 23 44-66 22-44 (181)
492 2fv8_A H6, RHO-related GTP-bin 92.8 0.054 1.9E-06 48.9 3.0 25 43-67 25-49 (207)
493 1gwn_A RHO-related GTP-binding 92.8 0.054 1.8E-06 49.2 2.9 23 44-66 29-51 (205)
494 2wsm_A Hydrogenase expression/ 92.8 0.068 2.3E-06 48.6 3.6 26 42-67 29-54 (221)
495 2q3h_A RAS homolog gene family 92.7 0.07 2.4E-06 47.6 3.5 25 42-66 19-43 (201)
496 1ko7_A HPR kinase/phosphatase; 92.7 0.063 2.2E-06 52.8 3.4 24 42-65 143-166 (314)
497 2fh5_B SR-beta, signal recogni 92.7 0.06 2E-06 48.6 3.1 24 43-66 7-30 (214)
498 1jwy_B Dynamin A GTPase domain 92.6 0.1 3.4E-06 50.4 4.8 25 43-67 24-48 (315)
499 3ice_A Transcription terminati 92.6 0.071 2.4E-06 54.1 3.8 28 40-67 171-198 (422)
500 2j1l_A RHO-related GTP-binding 92.6 0.058 2E-06 49.1 2.9 23 44-66 35-57 (214)
No 1
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.76 E-value=1.7e-18 Score=167.93 Aligned_cols=157 Identities=15% Similarity=0.061 Sum_probs=106.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
.++++-++|+||||||||||+++|+|.+++ ..+.|.+++. .......++++.|. ..+.+|+.+++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 106 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIG 106 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGG
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHH
Confidence 346778999999999999999999999874 2455555431 11223456677765 45567899988332
Q ss_pred ccC--C------------CCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882 111 ITN--L------------PFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI 166 (454)
Q Consensus 111 ~~~--~------------~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp 166 (454)
... . .... ..+++++..+++.... ......+++++ +||+.+|+||+||||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP 180 (257)
T 1g6h_A 107 EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY------DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180 (257)
T ss_dssp GTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred HhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh------CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 211 0 1111 3455666666663311 11233445444 688899999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcC
Q 012882 167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQD 205 (454)
Q Consensus 167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~ 205 (454)
+ +||+..+..+.++|.++.++|. ||++||+.....-+++
T Consensus 181 ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (257)
T 1g6h_A 181 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID 221 (257)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 9 8999999999999999987777 9999998654443333
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.76 E-value=6.5e-19 Score=172.49 Aligned_cols=157 Identities=16% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhh---hcccchhhhhhc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ---VAEKSLRSSISG 109 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~---~~~~t~~e~l~~ 109 (454)
..+.-++|+||||||||||+++|+|.+++ ..+.|.+.+. .....+.++++.|.. ....|+.+++..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~ 108 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Confidence 45778999999999999999999999874 2345554331 123345566666642 234677777732
Q ss_pred cccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 110 WITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 110 ~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
.......+. ..+++++..+++.... ......+++++ +||+.+|+||+||||+ +||+..+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i 182 (275)
T 3gfo_A 109 GAVNMKLPEDEIRKRVDNALKRTGIEHLK------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182 (275)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhh------cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 222111122 3445566666653321 11223445444 6888999999999999 8999999999
Q ss_pred HHHHHHHH-hCCc-EEEEecCCCccchhcCC
Q 012882 178 SGIVSRLL-STGT-VLVATSNRAPWDLNQDG 206 (454)
Q Consensus 178 ~~ll~~L~-~~G~-vlV~ThN~~P~dLy~~~ 206 (454)
.++|.++. +.|. ||++||+.....-++++
T Consensus 183 ~~~l~~l~~~~g~tvi~vtHdl~~~~~~~dr 213 (275)
T 3gfo_A 183 MKLLVEMQKELGITIIIATHDIDIVPLYCDN 213 (275)
T ss_dssp HHHHHHHHHHHCCEEEEEESCCSSGGGGCSE
T ss_pred HHHHHHHHhhCCCEEEEEecCHHHHHHhCCE
Confidence 99999997 5577 99999997655545544
No 3
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.75 E-value=6.3e-19 Score=171.45 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=102.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------------------HHHHHHHHHHHhhh--hh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------------------MLKINEHMHRLWKN--QV 98 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------------------~~~~~~~i~~~~~~--~~ 98 (454)
...++-++|+||||||||||+++|+|.+++. .+.|.+++. .....+.++++.|. ..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 105 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 105 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccC
Confidence 3467889999999999999999999998742 345544321 11234556777665 34
Q ss_pred cccchhhhhhcc---ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882 99 AEKSLRSSISGW---ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI 166 (454)
Q Consensus 99 ~~~t~~e~l~~~---~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp 166 (454)
+.+|+.+++... ....... ...+++++..+++.... .......+++++ +||+.+|+||+||||
T Consensus 106 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 180 (262)
T 1b0u_A 106 SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA-----QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180 (262)
T ss_dssp TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH-----HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 567888887321 1111111 13445566666653220 111233455554 688999999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+ +||+..+..+.++|.++.++|. ||++||+.
T Consensus 181 ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 181 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9 8999999999999999987776 99999984
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.75 E-value=1.7e-18 Score=168.56 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=102.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
...++-++|+||||||||||+++|+|.+++ ..+.|.+++. .....+.++++.|. ..+.+|+.+++..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~ 123 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL 123 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 356788999999999999999999999874 2345555431 12334567777765 3456688888732
Q ss_pred c---ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 110 W---ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 110 ~---~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
. ....... ...+++++..+++.... ......+++++ +||+.+|+||+||||+ +||+..+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 197 (263)
T 2olj_A 124 APMKVRKWPREKAEAKAMELLDKVGLKDKA------HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197 (263)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGT------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHh------cCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 1 1111111 13445566666653321 11233445544 6888999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.++|. ||++||+.
T Consensus 198 ~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 198 VLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp HHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHHHhCCCEEEEEcCCH
Confidence 9999999987777 99999983
No 5
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.74 E-value=7.7e-19 Score=177.90 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
.+.+.-++|+||||||||||+++|+|..++ ..+.|.+.+. ....++.++++.|. ..+.+|+.+++.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 356788999999999999999999999875 2445555431 11233456666665 345668888773
Q ss_pred ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
... ...... ...+++++..+++.... ......|++++ |||+.+|+||+||||+ +||+..+..
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~------~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~ 201 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKH------DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGT------TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHh------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 221 111111 13455666666664321 11233445554 7889999999999999 899999999
Q ss_pred HHHHHHHHHh-CCc-EEEEecCC
Q 012882 177 LSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
+.++|.++.+ .|. ||++||+.
T Consensus 202 i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 202 ILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp HHHHHHHHHHHSCCEEEEEESCH
T ss_pred HHHHHHHHHHhCCCEEEEEecCH
Confidence 9999999975 477 99999985
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.74 E-value=4.5e-18 Score=162.78 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HH---H-HHHHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------ML---K-INEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~---~-~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
.+++-++|+||||||||||+++|+|.+++ ..+.+.+++. .. . ..+.++++.|. ..+.+|+.+++.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~ 105 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE 105 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHH
Confidence 46788999999999999999999999975 2455555431 01 1 12346777776 345678888873
Q ss_pred ccccC---CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882 109 GWITN---LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA 173 (454)
Q Consensus 109 ~~~~~---~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~ 173 (454)
..... ..... ..+.+++..+++.... .......+++++ +||+.+|++|+||||+ +||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~ 180 (235)
T 3tif_A 106 LPLIFKYRGAMSGEERRKRALECLKMAELEERF-----ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180 (235)
T ss_dssp HHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG-----TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh-----hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 22111 01121 2334455555542210 011234455554 6889999999999999 899999
Q ss_pred HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 174 IVALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 174 a~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+..+.++|.++.++ |. ||++||+.
T Consensus 181 ~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 181 GEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 99999999999764 77 99999984
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=1.6e-18 Score=168.03 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=100.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcc--
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGW-- 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~-- 110 (454)
..++.-++|+||||||||||+++|+|.+++ ..+.|.+.+. .....+.+++++|. ....+|+.+++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 114 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHH
Confidence 346788999999999999999999999874 2345555431 12233446666665 34556788877221
Q ss_pred ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 111 ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 111 ~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
....... ...+++++..+++.... ......+++++ +||+.+|+||+||||+ +||+..+..+.++
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 188 (256)
T 1vpl_A 115 FYASSSSEIEEMVERATEIAGLGEKI------KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188 (256)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCGGGG------GSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHCCCchHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 1111111 12345556666653321 11123444444 6888999999999999 8999999999999
Q ss_pred HHHHHhCCc-EEEEecCC
Q 012882 181 VSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 181 l~~L~~~G~-vlV~ThN~ 197 (454)
|.++.+.|. ||++||+.
T Consensus 189 l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 189 LKQASQEGLTILVSSHNM 206 (256)
T ss_dssp HHHHHHTTCEEEEEECCH
T ss_pred HHHHHhCCCEEEEEcCCH
Confidence 999987777 89999984
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.74 E-value=3.7e-18 Score=162.18 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=99.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHH-HHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKIN-EHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~-~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
.+++-++|+||||||||||+++|+|.+++ ..+.+.+++.. .... +.++++.|. ..+.+|+.+++.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~ 104 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI 104 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence 45778999999999999999999999874 23455554311 1122 456666665 344567777762
Q ss_pred cc--ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GW--ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~--~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
.. ....... ...+++++..+++... .......+++++ +||+.+|++|+||||+ +||+..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 178 (224)
T 2pcj_A 105 VPMLKMGKPKKEAKERGEYLLSELGLGDK------LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178 (224)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTCTTC------TTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHH
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHH
Confidence 21 1111111 1234455555555321 111223445544 6889999999999999 899999999
Q ss_pred HHHHHHHHHhCCc-EEEEecCC
Q 012882 177 LSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+.++|.++.++|. ||++||+.
T Consensus 179 ~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 179 VMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp HHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHHHHCCCEEEEEcCCH
Confidence 9999999987777 99999983
No 9
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.74 E-value=3e-18 Score=166.97 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=106.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh---hhcccchhhhhhccccC-
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN---QVAEKSLRSSISGWITN- 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~~- 113 (454)
.++.-++|+||||||||||+++|+|.+++ ..+.|.+++.. ....+.++++.|. .....|+.+++......
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 107 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF 107 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence 46788999999999999999999999874 24555554311 1233445666664 23456888887332111
Q ss_pred CC--CChHHHHHHHHHHhhh--hHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 114 LP--FDSKVMEWVAAEEKYK--QEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 114 ~~--~~~~~~e~ll~~~~l~--~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
.. .....+++++..+++. ... ......+++++ +||+.+|+||+||||+ +||+..+..+.++|
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~------~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 181 (266)
T 2yz2_A 108 YPDRDPVPLVKKAMEFVGLDFDSFK------DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181 (266)
T ss_dssp CTTSCSHHHHHHHHHHTTCCHHHHT------TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCcCCcccc------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 11 1134567777777764 321 11223455554 6888999999999999 89999999999999
Q ss_pred HHHHhCCc-EEEEecCCCccchhcC
Q 012882 182 SRLLSTGT-VLVATSNRAPWDLNQD 205 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN~~P~dLy~~ 205 (454)
.++.+.|. ||++||+.....-+++
T Consensus 182 ~~l~~~g~tii~vtHd~~~~~~~~d 206 (266)
T 2yz2_A 182 EKWKTLGKTVILISHDIETVINHVD 206 (266)
T ss_dssp HHHHHTTCEEEEECSCCTTTGGGCS
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 99987676 9999998754443444
No 10
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.73 E-value=3.2e-18 Score=164.28 Aligned_cols=148 Identities=15% Similarity=0.220 Sum_probs=99.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHH-HHHHHHHhhh--hhcccchhhhhhccc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKI-NEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~-~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
+.+.-++|+||||||||||+++|+|.+++ ..+.+.+++. .... ...++++.|. ....+|+.+++....
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 45778999999999999999999999874 2345555431 1111 2236677665 345678888883322
Q ss_pred -cCCCCCh--HHHHHHHHHHh-hhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 112 -TNLPFDS--KVMEWVAAEEK-YKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 112 -~~~~~~~--~~~e~ll~~~~-l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
....... ...+.++..++ +.... ......+++++ +||+.+|+||+||||+ +||+..+..+.+
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~ 180 (240)
T 1ji0_A 107 YNRKDKEGIKRDLEWIFSLFPRLKERL------KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180 (240)
T ss_dssp TTCCCSSHHHHHHHHHHHHCHHHHTTT------TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcccHhhHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1111121 33455555553 43211 11122334443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|.++.+.|. +|++||+.
T Consensus 181 ~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 181 VIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp HHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHHCCCEEEEEecCH
Confidence 9999987776 99999983
No 11
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.73 E-value=6.3e-19 Score=166.46 Aligned_cols=151 Identities=10% Similarity=0.080 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhh--hhcccchhhhhhcc--ccCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKN--QVAEKSLRSSISGW--ITNLP 115 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~~~~ 115 (454)
..++-++|+||||||||||+++|+|.+++ ..+.+.+++... ...+.+++++|. ....+|+.+++... .....
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK 109 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc
Confidence 45677999999999999999999999874 245555543111 123345566554 34456788877221 11111
Q ss_pred CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882 116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~ 187 (454)
.....++.++..+++... ......+++++ +||+.+|++|+||||+ +||+..+..+.++|.++.+.
T Consensus 110 ~~~~~~~~~l~~~gl~~~-------~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 110 VNKNEIMDALESVEVLDL-------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp CCHHHHHHHHHHTTCCCT-------TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcC-------CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 223455666666665321 11123444443 6889999999999999 89999999999999999766
Q ss_pred Cc-EEEEecCCCccc
Q 012882 188 GT-VLVATSNRAPWD 201 (454)
Q Consensus 188 G~-vlV~ThN~~P~d 201 (454)
|. ||++||+.....
T Consensus 183 g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 183 KGIVIISSREELSYC 197 (214)
T ss_dssp HSEEEEEESSCCTTS
T ss_pred CCEEEEEeCCHHHHH
Confidence 66 999999865433
No 12
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.73 E-value=2.3e-18 Score=166.25 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=103.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWIT 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~ 112 (454)
.++.-++|+||||||||||+++|+|.+++ . +.+.+++. .....+.++++.|. ....+|+.+++.....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 99 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH 99 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence 46778999999999999999999999974 2 45555432 12344567777776 3455788888843211
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCc-------EEEeeCCC-CCCHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGAS-------ILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~-------lL~LDEp~-~lD~~~a~~L 177 (454)
.. .....+++++..+++.... ......+++++ +||+.+|+ +|+||||+ +||+..+..+
T Consensus 100 ~~-~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 100 DK-TRTELLNDVAGALALDDKL------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp ST-TCHHHHHHHHHHTTCGGGT------TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred cC-CcHHHHHHHHHHcCChhHh------cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 11 1245566777777764321 11123444444 67889999 99999999 8999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.++|..+.++|. ||++||+.
T Consensus 173 ~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHHhCCCEEEEEeCCH
Confidence 999999987776 99999983
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.72 E-value=1.2e-18 Score=176.25 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=102.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..+.-++|+||||||||||+++|+|..++. .+.+.+.+.. ....+.++++.|. ..+.+|+.+++...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~ 104 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence 457789999999999999999999998742 3445443211 1112346667666 56678899988433
Q ss_pred ccC--CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 111 ITN--LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 111 ~~~--~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
... .... ...+++++..+++... .......|++++ |||+.+|+||+||||+ +||+..+..+.
T Consensus 105 l~~~~~~~~~~~~~v~~~l~~~gL~~~------~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~ 178 (359)
T 3fvq_A 105 LGNGKGRTAQERQRIEAMLELTGISEL------AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIR 178 (359)
T ss_dssp STTSSCCSHHHHHHHHHHHHHHTCGGG------TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 222 1111 1455666777766432 122234455554 6889999999999999 89999999999
Q ss_pred HHHHHHH-hCCc-EEEEecCC
Q 012882 179 GIVSRLL-STGT-VLVATSNR 197 (454)
Q Consensus 179 ~ll~~L~-~~G~-vlV~ThN~ 197 (454)
+.+.++. +.|. +|++||+.
T Consensus 179 ~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 179 EDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp HHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHHHHHhCCCEEEEEeCCH
Confidence 8777765 5687 99999985
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.71 E-value=5.9e-18 Score=164.94 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI 111 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~ 111 (454)
..+++-++|+||||||||||+++|+|.+++. .+.|.+.+. .....+.++++.|. ....+|+.+++....
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence 3467889999999999999999999998752 345555432 12334455666554 334578888874332
Q ss_pred cCCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhcc------CCcEEEeeCCC-CCCHHHHH
Q 012882 112 TNLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQR------GASILCFDEIQ-TVDVFAIV 175 (454)
Q Consensus 112 ~~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~------~p~lL~LDEp~-~lD~~~a~ 175 (454)
.... .....++.++..+++.... ......+++++ +||+. +|+||+||||+ +||+..+.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 111 APYGGSQDRQALQQVMAQTDCLALA------QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp TTSCSTTHHHHHHHHHHHTTCSTTT------TSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHcCChhHh------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 2221 1224566677777664321 11223455554 67888 99999999999 89999999
Q ss_pred HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 176 ALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 176 ~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.+.++|.++.++ |. ||++||+.
T Consensus 185 ~i~~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 185 HTLRLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSCH
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCH
Confidence 999999999765 54 99999984
No 15
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.71 E-value=1.1e-18 Score=177.71 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
..+.-++|+||||||||||+++|+|..++ ..+.+.+.+.. ....+.++++.|+ +.+.+|+.+++.......
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~ 103 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence 46788999999999999999999999874 24455554321 0112335555555 455677777773322111
Q ss_pred CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 115 PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 115 ~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..+. ..+++++..+++... .......|++++ |||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~------~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~ 177 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHL------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGG------TTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchh------hcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 1111 344555555555321 112233455554 6888999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 178 ~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 178 RLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HHHHHHCCEEEEECSCH
T ss_pred HHHHhCCCEEEEEECCH
Confidence 99764 77 99999985
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.71 E-value=1.1e-18 Score=167.69 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
++ .-++|+||||||||||+++|+|.+++ ..+.+.+++.. ....+.++++.|. ..+.+|+.+++.......
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 98 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence 46 88999999999999999999999874 24555554311 0112345566554 344567888773221111
Q ss_pred C--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 115 P--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 115 ~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
. .....+++++..+++... .......+++++ +||+.+|++|+||||+ +||+..+..+.++|..+
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 99 ERVERDRRVREMAEKLGIAHL------LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp CHHHHHHHHHHHHHTTTCTTT------TTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 1 012334455555555321 111233455554 6889999999999999 89999999999999999
Q ss_pred HhC-Cc-EEEEecCC
Q 012882 185 LST-GT-VLVATSNR 197 (454)
Q Consensus 185 ~~~-G~-vlV~ThN~ 197 (454)
.++ |. ||++||+.
T Consensus 173 ~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 173 QREFDVPILHVTHDL 187 (240)
T ss_dssp HHHHTCCEEEEESCH
T ss_pred HHhcCCEEEEEeCCH
Confidence 753 66 99999984
No 17
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.71 E-value=2.8e-17 Score=158.43 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhccccC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWITN 113 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~ 113 (454)
++++-++|+||||||||||+++|+|.+++ ..+.|.+.+. .....+.++++.|.. ....|+.+++.....
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~- 108 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP- 108 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC-
Confidence 46788999999999999999999999874 2455555431 123455677777751 123588888733211
Q ss_pred CCCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI 180 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l 180 (454)
......++.++..+++..... ....+......+++++ +||+.+|+||+||||+ +||+..+..+.++
T Consensus 109 -~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 187 (247)
T 2ff7_A 109 -GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187 (247)
T ss_dssp -TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 123344455555555532111 0011111123455554 7889999999999999 8999999999999
Q ss_pred HHHHHhCCc-EEEEecCCC
Q 012882 181 VSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 181 l~~L~~~G~-vlV~ThN~~ 198 (454)
|.++. +|. ||++||+..
T Consensus 188 l~~~~-~g~tviivtH~~~ 205 (247)
T 2ff7_A 188 MHKIC-KGRTVIIIAHRLS 205 (247)
T ss_dssp HHHHH-TTSEEEEECSSGG
T ss_pred HHHHc-CCCEEEEEeCCHH
Confidence 99995 576 999999853
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.70 E-value=5.8e-18 Score=170.88 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=102.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccc--c
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWI--T 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~--~ 112 (454)
..+.-++|+||||||||||+++|+|..++ ..+.+.+++.. ....+.++++.|. ..+.+|+.+++.... .
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~ 100 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK 100 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 46678999999999999999999999874 24556554321 1224456777665 456678888872211 1
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL 184 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L 184 (454)
..... ..+++++..+++... .......|++++ +||+.+|+||+||||+ +||+..+..+.++|.++
T Consensus 101 ~~~~~-~~v~~~l~~~~L~~~------~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l 173 (348)
T 3d31_A 101 KIKDP-KRVLDTARDLKIEHL------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL 173 (348)
T ss_dssp CCCCH-HHHHHHHHHTTCTTT------TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 11111 455666666665331 112233455554 6889999999999999 89999999999999999
Q ss_pred Hh-CCc-EEEEecCC
Q 012882 185 LS-TGT-VLVATSNR 197 (454)
Q Consensus 185 ~~-~G~-vlV~ThN~ 197 (454)
.+ .|. +|++||+.
T Consensus 174 ~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 174 HKKNKLTVLHITHDQ 188 (348)
T ss_dssp HHHTTCEEEEEESCH
T ss_pred HHhcCCEEEEEeCCH
Confidence 75 476 99999984
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=3.8e-18 Score=167.44 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=101.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhhh--c--ccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQV--A--EKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~~--~--~~t~~e~l 107 (454)
..++.-++|+||||||||||+++|+|.+++. .+.|.+.+. .....+.++++.|... . .+|+.+++
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl 120 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVV 120 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHH
Confidence 3467789999999999999999999998742 345555431 1223445666766521 2 34888887
Q ss_pred hccccC---C--CCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 108 SGWITN---L--PFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 108 ~~~~~~---~--~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
...... . .... ..+++++..+++.... ......+++++ +||+.+|+||+||||+ +||+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~ 194 (279)
T 2ihy_A 121 ISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA------QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDF 194 (279)
T ss_dssp HTTC---------CCHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred HhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh------cCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence 332111 0 0111 3445566666653321 11223444444 6888999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCCc-E--EEEecCCCc
Q 012882 172 FAIVALSGIVSRLLSTGT-V--LVATSNRAP 199 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~G~-v--lV~ThN~~P 199 (454)
..+..+.++|.++.++|. | |++||+...
T Consensus 195 ~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~ 225 (279)
T 2ihy_A 195 IARESLLSILDSLSDSYPTLAMIYVTHFIEE 225 (279)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence 999999999999976676 8 999998643
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.70 E-value=3.8e-18 Score=165.15 Aligned_cols=141 Identities=14% Similarity=0.091 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc---CC-
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT---NL- 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~---~~- 114 (454)
+++.-++|+||||||||||+++|+|.+++. .+.+.. .+.+++++|. ....+|+.+++..... ..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~-------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~ 98 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV-------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF 98 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE-------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE-------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccc
Confidence 467789999999999999999999998742 344431 1235566665 3345688888733211 10
Q ss_pred -CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 115 -PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 115 -~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
... ...+++++..+++.... ......+++++ +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 172 (253)
T 2nq2_C 99 AKPKSHDYQVAMQALDYLNLTHLA------KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172 (253)
T ss_dssp CCCCHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCChHHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 011 13455666666664321 11233445554 6888999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. ||++||+.
T Consensus 173 ~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 173 DLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp HHHHTSCCEEEEEESCH
T ss_pred HHHHhcCCEEEEEecCH
Confidence 99876 76 99999983
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.69 E-value=1.1e-17 Score=169.57 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=102.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
+.+.-++|+||||||||||+++|+|..++ ..+.+.+++.. ....+.++++.|. ..+.+|+.+++.......
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 46778999999999999999999999874 24555554311 0112346666665 456678888873322211
Q ss_pred CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 115 PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 115 ~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
... ...+++++..+++.... ......+++++ +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~------~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 177 (359)
T 2yyz_A 104 RISKDEVEKRVVEIARKLLIDNLL------DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177 (359)
T ss_dssp CSHHHHTTHHHHHHHHHTTCGGGT------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 111 13456666766664321 12233455554 6889999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 178 ~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 178 HLQQELGITSVYVTHDQ 194 (359)
T ss_dssp HHHHHHCCEEEEEESCH
T ss_pred HHHHhcCCEEEEEcCCH
Confidence 99754 76 99999984
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.69 E-value=2.8e-18 Score=173.63 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
+.+.-++|+||||||||||+++|+|..++. .+.+.+++. ....++.++++.|. ..+.+|+.+++..
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 105 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF 105 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence 467789999999999999999999998742 344544321 11122346666665 4566788888833
Q ss_pred cccCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882 110 WITNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL 177 (454)
Q Consensus 110 ~~~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L 177 (454)
........ ...+++++..+++.... ......|++++ +||+.+|+||+||||+ +||+..+..+
T Consensus 106 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~------~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 106 PLTNMKMSKEEIRKRVEEVAKILDIHHVL------NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp GGTTSSCCHHHHHHHHHHHHHHTTCGGGT------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchHh------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 22211112 13455666666664321 12233455554 6889999999999999 8999999999
Q ss_pred HHHHHHHHhC-Cc-EEEEecCC
Q 012882 178 SGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
.++|.++.++ |. +|++|||.
T Consensus 180 ~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 180 RALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp HHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999754 76 99999984
No 23
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.69 E-value=6.7e-18 Score=170.75 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccc--c
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWI--T 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~--~ 112 (454)
+.+.-++|+||||||||||+++|+|..++ ..+.+.+.+.. ....+.++++.|. ..+.+|+.+++.... .
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~ 115 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK 115 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999999874 24555554311 0112335555554 445667777762211 1
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...+++++..+++... .......|++++ +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 116 ~~~~~~~~~~v~~~l~~~gL~~~------~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 189 (355)
T 1z47_A 116 RVPKDEMDARVRELLRFMRLESY------ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVR 189 (355)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGG------TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11111 1344555555555321 112233455554 6889999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 190 ~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 190 QVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp HHHHHHTCEEEEECSCH
T ss_pred HHHHhcCCEEEEECCCH
Confidence 99754 76 99999984
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.68 E-value=1.5e-17 Score=169.17 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=99.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~ 114 (454)
..+.-++|+||||||||||+++|+|..++ ..+.+.+++.. ....+.++++.|. ..+.+|+.+++.......
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 46778999999999999999999999874 24555554311 0112345666665 456788888884322211
Q ss_pred CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 115 PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 115 ~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.... ..+++++..+++.... ......|++++ +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 112 ~~~~~~~~~~v~~~l~~~~L~~~~------~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 185 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAELLQIEELL------NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 185 (372)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGT------TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHh------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 1121 3455666666664321 11233455554 6888999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 186 ~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 186 KLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp HHHHHHTCEEEEEESCH
T ss_pred HHHHhCCCEEEEEeCCH
Confidence 99764 76 99999984
No 25
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.67 E-value=5.6e-18 Score=172.54 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSIS 108 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~ 108 (454)
+.+.-++|+||||||||||+++|+|..++. .+.+.+++.. ....+.++++.|. ..+.+|+.+++.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~ 103 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA 103 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence 456789999999999999999999998742 3455443210 0112334555554 345567777762
Q ss_pred ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882 109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA 176 (454)
Q Consensus 109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~ 176 (454)
... ...... ...+++++..+++... .......|++++ +||+.+|+||+||||+ +||+..+..
T Consensus 104 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 177 (372)
T 1g29_1 104 FPLKLRKVPRQEIDQRVREVAELLGLTEL------LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177 (372)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTCGGG------TTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchH------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 211 111111 1234455555555321 111223445554 6889999999999999 899999999
Q ss_pred HHHHHHHHHhC-Cc-EEEEecCC
Q 012882 177 LSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 177 L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+.++|.++.++ |. +|++||+.
T Consensus 178 l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 178 MRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHHHHhcCCEEEEECCCH
Confidence 99999999754 76 99999984
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.67 E-value=1.3e-17 Score=169.12 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWIT-- 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-- 112 (454)
+.+.-++|+||||||||||+++|+|..++ ..+.+.+++... ...+.++++.|. ..+.+|+.+++.....
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999999999874 245555543110 112345555554 3455677777622111
Q ss_pred CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
..... ...+++++..+++... .......|++++ +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~------~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 177 (362)
T 2it1_A 104 KAPREEIDKKVREVAKMLHIDKL------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELK 177 (362)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTC------TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchH------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 11111 1234455555555321 111223455554 6889999999999999 899999999999999
Q ss_pred HHHhC-Cc-EEEEecCC
Q 012882 183 RLLST-GT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~-G~-vlV~ThN~ 197 (454)
++.++ |. +|++||+.
T Consensus 178 ~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 178 RLQKELGITTVYVTHDQ 194 (362)
T ss_dssp HHHHHHTCEEEEEESCH
T ss_pred HHHHhCCCEEEEECCCH
Confidence 99754 76 99999984
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.67 E-value=1.7e-16 Score=154.99 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=95.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||+++|+|.+++ ..+.|.+.+. .....+.++++.|.. ....|+.+++.....
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~ 118 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT 118 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcc
Confidence 356778999999999999999999999874 2345555431 123445677777652 123488888733221
Q ss_pred CCCCChHHHHHHHHHHhhhhH---H--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQE---V--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~---~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.. .........+...++... . +....+......+++++ +||+.+|+||+||||+ +||+..+..+.+
T Consensus 119 ~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 197 (271)
T 2ixe_A 119 RT-PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197 (271)
T ss_dssp SC-CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred cC-ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 11 111111111111111110 0 01111111223445444 6889999999999999 899999999999
Q ss_pred HHHHHHh-CCc-EEEEecCC
Q 012882 180 IVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~-~G~-vlV~ThN~ 197 (454)
+|.++.+ .|. ||++||+.
T Consensus 198 ~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 198 LLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHHCTTTTTSEEEEECSCH
T ss_pred HHHHHHhhcCCEEEEEeCCH
Confidence 9999864 476 89999983
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.66 E-value=1.6e-16 Score=157.79 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=100.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||+++|+|.+++ ..+.|.+++. ...+++.++++.|+ .....|+.+++.....
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~ 153 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV 153 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc
Confidence 356788999999999999999999999874 2445555432 23456677777776 2224588888743221
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.......+..+...++.... +....+..-...+++++ |||+.+|+||+||||+ +||+.+...+.+
T Consensus 154 --~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~ 231 (306)
T 3nh6_A 154 --TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231 (306)
T ss_dssp --TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 12233444444444432211 00000111112344443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCC
Q 012882 180 IVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~ 197 (454)
+|..+.+..++|++||+.
T Consensus 232 ~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 232 SLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHTTSEEEEECCSH
T ss_pred HHHHHcCCCEEEEEEcCh
Confidence 999987654599999973
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.65 E-value=4.6e-17 Score=157.16 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=93.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhC--CCCcccCceEEEechhH------HHH-HHHHHHHhhh--hhcccchhhhhhc
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGA--TEGIVKHRQRFHFHEAM------LKI-NEHMHRLWKN--QVAEKSLRSSISG 109 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~--l~~~~~~k~rv~f~~f~------~~~-~~~i~~~~~~--~~~~~t~~e~l~~ 109 (454)
.+++-++|+||||||||||+++|+|. .++ ..+.+.+++.. ... ...+.++.|. ..+.+|+.+++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence 46788999999999999999999997 432 24555554311 111 1123445554 3445677777622
Q ss_pred cc---cCCCCC----hHHHHHHHHHHhhh-hHHhhcchHHHHHHH-hhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882 110 WI---TNLPFD----SKVMEWVAAEEKYK-QEVQMKNILPAVADK-FLVDQ-------HADQRGASILCFDEIQ-TVDVF 172 (454)
Q Consensus 110 ~~---~~~~~~----~~~~e~ll~~~~l~-~~~~~~~~l~~va~~-l~~~~-------rAL~~~p~lL~LDEp~-~lD~~ 172 (454)
.. ...... ...+++++..+++. ... ...... +++++ +||+.+|+||+||||+ +||+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~ 177 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYL------SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG------GSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHH
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHh------cCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 11 111111 12345556655552 211 111122 44443 6888999999999999 89999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 173 AIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 173 ~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
.+..+.++|.++.++|. ||++||+..
T Consensus 178 ~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 178 ALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp HHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999999976676 999999853
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.64 E-value=5.7e-16 Score=150.41 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||+++|+|.+++ . +.|.+.+. .....+.++++.|.. ....|+.+++.....
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~--G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~ 118 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA--E--GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL 118 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC--E--EEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC--C--eEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCC
Confidence 356788999999999999999999999862 3 45555431 122344566666651 123588888732211
Q ss_pred CCCCChHHHHHHHHHHhhhhHHh-hcc----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQ-MKN----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~-~~~----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
........+.+...++..... ..+ .+......+++++ +||+.+|+||+||||+ +||+..+..+.+
T Consensus 119 --~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 119 --DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196 (260)
T ss_dssp --TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 122333344444444322110 000 0000112344443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
+|.++.+ |. +|++||+.
T Consensus 197 ~l~~l~~-~~tviivtH~~ 214 (260)
T 2ghi_A 197 AVEDLRK-NRTLIIIAHRL 214 (260)
T ss_dssp HHHHHTT-TSEEEEECSSG
T ss_pred HHHHhcC-CCEEEEEcCCH
Confidence 9999965 65 99999985
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.64 E-value=4.7e-17 Score=158.32 Aligned_cols=145 Identities=14% Similarity=0.065 Sum_probs=97.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH---HHHHHHH-HHhhhhhcccchhhhhhccccCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML---KINEHMH-RLWKNQVAEKSLRSSISGWITNLP 115 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~---~~~~~i~-~~~~~~~~~~t~~e~l~~~~~~~~ 115 (454)
.. +.-++|+||||||||||+++|+|.+ +. . +.+.+++... ...+.++ ++.|...-.+|+.+++........
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~-~--G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~ 102 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PY-S--GNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKG 102 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CC-E--EEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTC
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CC-C--cEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcc
Confidence 35 6779999999999999999999988 53 3 4554443110 0023456 666652116678777732111112
Q ss_pred CChHHHHHHHHHHhhh-hHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 116 FDSKVMEWVAAEEKYK-QEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~-~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
.....+++++..+++. ... ......+++++ +||+.+|++|+||||+ +||+..+..+.++|.++.+
T Consensus 103 ~~~~~~~~~l~~~gl~~~~~------~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 103 LDRDLFLEMLKALKLGEEIL------RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp CCHHHHHHHHHHTTCCGGGG------GSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred hHHHHHHHHHHHcCCChhHh------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 2345566677776664 321 11223444444 6888999999999999 8999999999999998854
Q ss_pred CCcEEEEecCC
Q 012882 187 TGTVLVATSNR 197 (454)
Q Consensus 187 ~G~vlV~ThN~ 197 (454)
++|++||+.
T Consensus 177 --tviivtHd~ 185 (263)
T 2pjz_A 177 --EGILVTHEL 185 (263)
T ss_dssp --EEEEEESCG
T ss_pred --cEEEEEcCH
Confidence 899999985
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.64 E-value=2.2e-17 Score=158.72 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhh-hcccchhhhhhccccCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQ-VAEKSLRSSISGWITNLP 115 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~ 115 (454)
++++-++|+||||||||||+++|+|.+++. .|...+...... ....+.+++++|.. ....|+.+++..... ..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~ 103 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE-GD 103 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT-SC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhcc-CC
Confidence 467889999999999999999999998742 443333221110 11223456666551 122488888733211 11
Q ss_pred CChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882 116 FDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS 182 (454)
Q Consensus 116 ~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~ 182 (454)
.....++.++..+++..... ....+......+++++ +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 23344555555555432110 0000011122344443 6888999999999999 899999999999999
Q ss_pred HHHhCCc-EEEEecCC
Q 012882 183 RLLSTGT-VLVATSNR 197 (454)
Q Consensus 183 ~L~~~G~-vlV~ThN~ 197 (454)
++. +|. +|++||+.
T Consensus 184 ~~~-~~~tvi~vtH~~ 198 (243)
T 1mv5_A 184 SLM-KGRTTLVIAHRL 198 (243)
T ss_dssp HHH-TTSEEEEECCSH
T ss_pred Hhc-CCCEEEEEeCCh
Confidence 997 576 99999973
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.62 E-value=1.3e-16 Score=155.55 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=95.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHH-HHHHHHHhhh--hhcccchhhhhhcc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKI-NEHMHRLWKN--QVAEKSLRSSISGW 110 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~-~~~i~~~~~~--~~~~~t~~e~l~~~ 110 (454)
..++.-++|+||||||||||+++|+|..+. ....+.+.+.+.. ... ...+.++.|. ..+.+|+.+++...
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHH
Confidence 356788999999999999999999998421 1124555554321 111 1124455554 23455666665211
Q ss_pred c------cCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHH-Hhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882 111 I------TNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVAD-KFLVDQ-------HADQRGASILCFDEIQ-TVD 170 (454)
Q Consensus 111 ~------~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~-~l~~~~-------rAL~~~p~lL~LDEp~-~lD 170 (454)
. ... .... ..+++++..+++... ....... .+++++ +||+.+|+||+||||+ +||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD 196 (267)
T 2zu0_C 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED-----LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196 (267)
T ss_dssp HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT-----TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh-----HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 0 111 1111 234455555555210 0011111 244443 6888999999999999 899
Q ss_pred HHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 171 VFAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
+..+..+.++|.++.++|. ||++||+..
T Consensus 197 ~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 197 IDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 9999999999999876677 999999853
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.60 E-value=2.8e-16 Score=150.53 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=90.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChH
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSK 119 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~ 119 (454)
++++-++|+||||||||||+++|+|.+++ ..+.|.+.+ .++++.|. .....|+.+++..... ....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g-------~i~~v~Q~~~~~~~tv~enl~~~~~---~~~~ 95 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG-------SVAYVPQQAWIQNDSLRENILFGCQ---LEEP 95 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS-------CEEEECSSCCCCSEEHHHHHHTTSC---CCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC-------EEEEEcCCCcCCCcCHHHHhhCccc---cCHH
Confidence 46788999999999999999999999864 245565544 25566554 2335678888733211 1122
Q ss_pred HHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH---H
Q 012882 120 VMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS---R 183 (454)
Q Consensus 120 ~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~---~ 183 (454)
..+.+....++....+. ...+......+++++ +||+.+|+||+||||+ +||+..+..+.+++. .
T Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 175 (237)
T 2cbz_A 96 YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG 175 (237)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTS
T ss_pred HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHh
Confidence 22333332222111000 000011122344443 6888999999999999 899999999998884 3
Q ss_pred HHhCCc-EEEEecCCCc
Q 012882 184 LLSTGT-VLVATSNRAP 199 (454)
Q Consensus 184 L~~~G~-vlV~ThN~~P 199 (454)
+. +|. +|++||+...
T Consensus 176 ~~-~~~tviivtH~~~~ 191 (237)
T 2cbz_A 176 ML-KNKTRILVTHSMSY 191 (237)
T ss_dssp TT-TTSEEEEECSCSTT
T ss_pred hc-CCCEEEEEecChHH
Confidence 43 466 9999998643
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.59 E-value=4.6e-16 Score=148.22 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=89.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCCCh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
++++-++|+||||||||||+++|+|.+++ ..+.+.+++ .+++++|. ..+ .|+.+++.... ....
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g-------~i~~v~q~~~~~~-~tv~enl~~~~---~~~~ 97 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG-------RISFCSQFSWIMP-GTIKENIIFGV---SYDE 97 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS-------CEEEECSSCCCCS-BCHHHHHHTTS---CCCH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC-------EEEEEecCCcccC-CCHHHHhhccC---CcCh
Confidence 46788999999999999999999999874 245665554 35566665 223 37778773221 1122
Q ss_pred HHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHHH
Q 012882 119 KVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSRL 184 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L 184 (454)
...+..+...++...... ...+..-...+++++ +||+.+|++|+||||+ ++|+..+..+.++ +..+
T Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 98 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 222333333333211100 000000112444444 6888999999999999 8999999999886 4555
Q ss_pred HhCCc-EEEEecCC
Q 012882 185 LSTGT-VLVATSNR 197 (454)
Q Consensus 185 ~~~G~-vlV~ThN~ 197 (454)
. .|. +|++||+.
T Consensus 178 ~-~~~tvi~vtH~~ 190 (229)
T 2pze_A 178 M-ANKTRILVTSKM 190 (229)
T ss_dssp T-TTSEEEEECCCH
T ss_pred h-CCCEEEEEcCCh
Confidence 4 355 99999973
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.58 E-value=5.3e-16 Score=158.77 Aligned_cols=176 Identities=14% Similarity=0.140 Sum_probs=109.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
...++-++|+||||||||||+++|+|..+ . .+.|.+++. .....+.++++.|.. ....|+.+++...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~--~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~-- 117 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN--T--EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPN-- 117 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE--E--EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTT--
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC--C--CeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhc--
Confidence 35678899999999999999999999875 2 355555432 123345667777661 1235788877311
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcc-----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKN-----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~-----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
.......+++++..+++........ .+..-...|++++ |||+.+|+||+||||+ +||+..+..+.+
T Consensus 118 -~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~ 196 (390)
T 3gd7_A 118 -AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196 (390)
T ss_dssp -CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1223455566666666643211000 0000011155554 7889999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882 180 IVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD 233 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D 233 (454)
+|..+....++|++||+.. .-..++++ .+.+.++++..+++.+
T Consensus 197 ~l~~~~~~~tvi~vtHd~e-~~~~aDri----------~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 197 TLKQAFADCTVILCEARIE-AMLECDQF----------LVIEENKVRQYDSILE 239 (390)
T ss_dssp HHHTTTTTSCEEEECSSSG-GGTTCSEE----------EEEETTEEEEESSHHH
T ss_pred HHHHHhCCCEEEEEEcCHH-HHHhCCEE----------EEEECCEEEEECCHHH
Confidence 9988754333999999853 22224432 2334556665555544
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.58 E-value=3.1e-15 Score=161.03 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=102.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+||||||||||+++++|..+|. .|...+...+. ....++.+++++|+. ....|+.+++..... .
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~ 443 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE-G 443 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC-C
Confidence 3566779999999999999999999998752 44444433222 123445677777762 223488888843221 1
Q ss_pred CCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+..++.+...++.+... .+..+..-...+++++ |||+++|++|+||||+ ++|+.+...+.+.+
T Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l 523 (582)
T 3b5x_A 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523 (582)
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 123445555555555533111 1111111223455554 7899999999999999 89999999999999
Q ss_pred HHHHhCCc-EEEEecCC
Q 012882 182 SRLLSTGT-VLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~-vlV~ThN~ 197 (454)
.++.+ |+ +|++||+.
T Consensus 524 ~~~~~-~~tvi~itH~~ 539 (582)
T 3b5x_A 524 DELQK-NKTVLVIAHRL 539 (582)
T ss_pred HHHcC-CCEEEEEecCH
Confidence 99865 66 89999974
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.56 E-value=1.7e-15 Score=149.26 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=89.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPFD 117 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~~ 117 (454)
.++++-++|+||||||||||+++|+|.+++ ..+.+.+++ .+++++|. ... .|+.+++. .. ...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g-------~i~~v~Q~~~l~~-~tv~enl~-~~---~~~ 125 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG-------RISFCSQNSWIMP-GTIKENII-GV---SYD 125 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS-------CEEEECSSCCCCS-SBHHHHHH-TT---CCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC-------EEEEEeCCCccCc-ccHHHHhh-Cc---ccc
Confidence 346777999999999999999999999874 345666554 25566655 223 37777775 21 112
Q ss_pred hHHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHH
Q 012882 118 SKVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSR 183 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~ 183 (454)
....+..+...++...... ...+......+++++ +||+.+|+||+||||+ +||+..+..+.++ +..
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~ 205 (290)
T 2bbs_A 126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 2222233333333211000 001111223455554 6889999999999999 8999999999886 445
Q ss_pred HHhCCc-EEEEecCC
Q 012882 184 LLSTGT-VLVATSNR 197 (454)
Q Consensus 184 L~~~G~-vlV~ThN~ 197 (454)
+. .|. ||++||+.
T Consensus 206 ~~-~~~tviivtHd~ 219 (290)
T 2bbs_A 206 LM-ANKTRILVTSKM 219 (290)
T ss_dssp CT-TTSEEEEECCCH
T ss_pred hh-CCCEEEEEecCH
Confidence 54 466 99999983
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.55 E-value=4.6e-15 Score=160.04 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=102.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||+++|+|..++ ..+.+.+++. ....++.+++++|+. ....|+.+++.....
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 443 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDP---ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 443 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCC---SEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCC
Confidence 356788999999999999999999999874 2345554431 223455677777762 223588888843221
Q ss_pred C-CCCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 113 N-LPFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 113 ~-~~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
. ...+.+..++.+...++.+... .+..+..-...+++++ |||+++|++|+||||+ ++|+.+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~ 523 (595)
T 2yl4_A 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 523 (595)
T ss_dssp STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHH
T ss_pred CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHH
Confidence 1 1134455566666555533110 0111101112344444 7888999999999999 89999999999
Q ss_pred HHHHHHHhCCcEEEEecC
Q 012882 179 GIVSRLLSTGTVLVATSN 196 (454)
Q Consensus 179 ~ll~~L~~~G~vlV~ThN 196 (454)
+.+.++.+..++|++||+
T Consensus 524 ~~l~~~~~~~tvi~itH~ 541 (595)
T 2yl4_A 524 EALDRLMDGRTVLVIAHR 541 (595)
T ss_dssp HHHHHHHTTSEEEEECCC
T ss_pred HHHHHHhcCCEEEEEecC
Confidence 999999773349999997
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.54 E-value=7.1e-15 Score=158.15 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=101.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||+++++|..++ ..+.+.+++. ....++.+++++|+. ....|+.+++.....
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 442 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART 442 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC
Confidence 356788999999999999999999999874 2345555431 234556677777762 223488888843221
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
...+.+..++.+...++.+.. +.+..+..-...+++++ |||+++|++|+||||+ ++|+.+...+.+
T Consensus 443 -~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 443 -EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_dssp -SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 112344455555554443211 00111111122345554 7889999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++.+ |+ +|++||+.
T Consensus 522 ~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b60_A 522 ALDELQK-NRTSLVIAHRL 539 (582)
T ss_dssp HHHHHHT-TSEEEEECSCG
T ss_pred HHHHHhC-CCEEEEEeccH
Confidence 9999975 66 89999975
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.54 E-value=1.1e-14 Score=157.12 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||++++.|..++ ..+.+.+++. ....++.+++++|+. ....|+.+|+.....
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 454 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP 454 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC
Confidence 456788999999999999999999999975 2345554431 234566788887762 224588888843221
Q ss_pred CCCCChHHHHHHHHHHhhhhH-----HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQE-----VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~-----~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. .+.....+.+...++... .+.+..+..-...+++++ |||+++|+||+||||+ ++|+.+...+.+
T Consensus 455 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~ 532 (598)
T 3qf4_B 455 G--ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532 (598)
T ss_dssp T--CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 1 122233333332222211 012222333445566665 7899999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++.+ |+ +|++||+.
T Consensus 533 ~l~~~~~-~~t~i~itH~l 550 (598)
T 3qf4_B 533 AMWKLME-GKTSIIIAHRL 550 (598)
T ss_dssp HHHHHHT-TSEEEEESCCT
T ss_pred HHHHHcC-CCEEEEEecCH
Confidence 9999864 55 99999985
No 42
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.6e-15 Score=161.53 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=90.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhh--cccchhhhhhccccCC-CCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQV--AEKSLRSSISGWITNL-PFD 117 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~--~~~t~~e~l~~~~~~~-~~~ 117 (454)
..+.-++|+||||||||||+++|+|.+++. .|. +.+.. ..+.++++... ...++.+++....... ...
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~--i~~~~------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 362 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITAD-EGS--VTPEK------QILSYKPQRIFPNYDGTVQQYLENASKDALSTS 362 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCS-BCC--EESSC------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcE--EEECC------eeeEeechhcccccCCCHHHHHHHhhhhccchh
Confidence 356779999999999999999999998752 333 32211 11223333321 2345555542211111 112
Q ss_pred hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CC
Q 012882 118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TG 188 (454)
Q Consensus 118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G 188 (454)
....++++..+++... .......|++++ +||+.+|+||+||||| +||+..+..+.++|.++.+ .|
T Consensus 363 ~~~~~~~l~~~~l~~~------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g 436 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRL------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK 436 (538)
T ss_dssp SHHHHHTTTTTTGGGC------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 2334455554544321 122233455554 6888999999999999 8999999999999999975 46
Q ss_pred c-EEEEecCC
Q 012882 189 T-VLVATSNR 197 (454)
Q Consensus 189 ~-vlV~ThN~ 197 (454)
. ||++||+.
T Consensus 437 ~tvi~vsHdl 446 (538)
T 3ozx_A 437 AVTFIIDHDL 446 (538)
T ss_dssp CEEEEECSCH
T ss_pred CEEEEEeCCH
Confidence 6 89999984
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.53 E-value=1.1e-15 Score=164.96 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCCh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~ 118 (454)
..+.-++|+||||||||||+++|+|.+++. .|... +. ..+++++|.. ....|+.+++...........
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~--~~-------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~ 449 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVE--WD-------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN 449 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BSCCC--CC-------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEE--Ee-------eEEEEEecCccCCCCCcHHHHHHhhhccCCCHH
Confidence 356779999999999999999999998742 33322 11 1244444442 233455554422100000112
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH-hCCc
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL-STGT 189 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~-~~G~ 189 (454)
..+++++..+++... .......|++++ ++|+.+|+||+||||+ +||+..+..+.++|.++. +.|.
T Consensus 450 ~~~~~~l~~~~l~~~------~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 523 (607)
T 3bk7_A 450 FYKTELLKPLGIIDL------YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523 (607)
T ss_dssp HHHHHTHHHHTCTTT------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334455555555321 111223445544 6888999999999999 899999999999999996 4566
Q ss_pred -EEEEecCC
Q 012882 190 -VLVATSNR 197 (454)
Q Consensus 190 -vlV~ThN~ 197 (454)
||++||+.
T Consensus 524 tvi~vsHd~ 532 (607)
T 3bk7_A 524 TALVVEHDV 532 (607)
T ss_dssp EEEEECSCH
T ss_pred EEEEEeCCH
Confidence 99999984
No 44
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.53 E-value=1.8e-14 Score=130.95 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=56.8
Q ss_pred cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCC------chhhhhHHHHHHHHhhccccc
Q 012882 156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDG------MQREIFQKLVAKLEKHCEIIP 227 (454)
Q Consensus 156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~------l~r~~F~~~I~~L~~~~~vv~ 227 (454)
.+|++||||||+ ++|......+.+++..+.+.|+.+|+|+|.+|++|++++ +....-...+++|...|.++.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~ 178 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQREEESSVRISADLASRLGENVVSKIYEMNELLV 178 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC---CHHHHHHHHHHHHCHHHHHHHHHHEEEEC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhhhhccchhhHHHHHHHHHHHHHHHhcCeeee
Confidence 479999999998 799999999999999998888988888899999987633 222222456788888998886
Q ss_pred c
Q 012882 228 I 228 (454)
Q Consensus 228 l 228 (454)
+
T Consensus 179 ~ 179 (180)
T 3ec2_A 179 I 179 (180)
T ss_dssp C
T ss_pred e
Confidence 5
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.52 E-value=9e-16 Score=163.61 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCCh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~ 118 (454)
..+.-++|+||||||||||+++|+|..++. .|... +. ..+++++|.. ....|+.+++...........
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~i~--~~-------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~ 379 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIE--WD-------LTVAYKPQYIKADYEGTVYELLSKIDASKLNSN 379 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BCCCC--CC-------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEE--EC-------ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH
Confidence 357789999999999999999999998742 33322 11 1233444432 123455444321100000112
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT 189 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~ 189 (454)
..++.++..+++... .......|++++ ++|+.+|+||+||||| +||+..+..+.++|.++.+ .|.
T Consensus 380 ~~~~~~l~~~~l~~~------~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~ 453 (538)
T 1yqt_A 380 FYKTELLKPLGIIDL------YDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453 (538)
T ss_dssp HHHHHTTTTTTCGGG------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 233344444443211 111223444443 6888999999999999 8999999999999999963 465
Q ss_pred -EEEEecCC
Q 012882 190 -VLVATSNR 197 (454)
Q Consensus 190 -vlV~ThN~ 197 (454)
||++||+.
T Consensus 454 tvi~vsHd~ 462 (538)
T 1yqt_A 454 TALVVEHDV 462 (538)
T ss_dssp EEEEECSCH
T ss_pred EEEEEeCCH
Confidence 99999984
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.52 E-value=1.1e-14 Score=156.94 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=98.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||++++.|..++. .+.+.+++. ....++.+++++|+. .-..|+.+|+.....
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 442 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE 442 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC
Confidence 3567889999999999999999999999752 345544331 234567788888762 223488888743211
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
..+.....+.+...++.... +.+..+.+-...+++++ |||+++|+||+||||+ ++|+.+...+.+
T Consensus 443 --~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~ 520 (587)
T 3qf4_A 443 --DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520 (587)
T ss_dssp --SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 12233333333333332110 11111111122344443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++.+ |+ +|++||+.
T Consensus 521 ~l~~~~~-~~tvi~itH~l 538 (587)
T 3qf4_A 521 GLKRYTK-GCTTFIITQKI 538 (587)
T ss_dssp HHHHHST-TCEEEEEESCH
T ss_pred HHHHhCC-CCEEEEEecCh
Confidence 9999854 55 99999973
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.51 E-value=1.6e-14 Score=155.33 Aligned_cols=154 Identities=11% Similarity=0.068 Sum_probs=100.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||++++.|..++. .+.+.+++. ....++.+++++|+ .....|+.+|+.....
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~ 440 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC
Confidence 3567889999999999999999999999752 345555431 23455667777776 2223488888743221
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
........+.+...++.... +.+..+..-...+++++ |||+++|++|+||||+ ++|+.+...+.+
T Consensus 441 --~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~ 518 (578)
T 4a82_A 441 --TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518 (578)
T ss_dssp --SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 12233333344333332210 11111111223455554 7889999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCCC
Q 012882 180 IVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~~ 198 (454)
.+..+.+..++|++||+..
T Consensus 519 ~l~~~~~~~t~i~itH~l~ 537 (578)
T 4a82_A 519 ALDVLSKDRTTLIVAHRLS 537 (578)
T ss_dssp HHHHHTTTSEEEEECSSGG
T ss_pred HHHHHcCCCEEEEEecCHH
Confidence 9998865445999999853
No 48
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6.2e-15 Score=158.94 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=86.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCChHHH
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDSKVM 121 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~~~~ 121 (454)
.-++|+||||||||||+++|+|.+++. .|.. + . ...+.+++|.. ....++.+++..............
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~-~--~------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 448 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPD-EGQD-I--P------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQ 448 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCS-BCCC-C--C------SCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCcC-c--c------CCcEEEecccccccCCccHHHHHHHHhhcccccHHHH
Confidence 338999999999999999999998753 3320 0 0 00122222221 112244444432222222233455
Q ss_pred HHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH-hCCc-EE
Q 012882 122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL-STGT-VL 191 (454)
Q Consensus 122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~-~~G~-vl 191 (454)
+.++..+++.... ......|++++ +||+.+|+||+||||+ +||+.++..+.++|.++. +.|. ||
T Consensus 449 ~~~l~~l~l~~~~------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi 522 (608)
T 3j16_B 449 TDVVKPLRIDDII------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522 (608)
T ss_dssp HHTHHHHTSTTTS------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHcCChhhh------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 5666666653211 11122344443 5788999999999999 899999999999999986 4466 99
Q ss_pred EEecCC
Q 012882 192 VATSNR 197 (454)
Q Consensus 192 V~ThN~ 197 (454)
++|||.
T Consensus 523 ivtHdl 528 (608)
T 3j16_B 523 IVEHDF 528 (608)
T ss_dssp EECSCH
T ss_pred EEeCCH
Confidence 999984
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.49 E-value=1.3e-14 Score=156.60 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=86.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE-------Eechh-HHHHHHHHH-------HHhhhh--hc---
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF-------HFHEA-MLKINEHMH-------RLWKNQ--VA--- 99 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv-------~f~~f-~~~~~~~i~-------~~~~~~--~~--- 99 (454)
..++.-++|+||||||||||+++|+|.+++. .|.... .+.+. ......... +..+.. ..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 4567789999999999999999999998653 333100 01100 000000000 000000 00
Q ss_pred ccchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882 100 EKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV 171 (454)
Q Consensus 100 ~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~ 171 (454)
..++.+++.. ......+++++..+++... .......|++++ +||+.+|+||+||||+ +||+
T Consensus 193 ~~tv~e~l~~-----~~~~~~~~~~L~~lgL~~~------~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~ 261 (607)
T 3bk7_A 193 KGKVRELLKK-----VDEVGKFEEVVKELELENV------LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261 (607)
T ss_dssp CSBHHHHHHH-----TCCSSCHHHHHHHTTCTTG------GGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCH
T ss_pred cccHHHHhhh-----hHHHHHHHHHHHHcCCCch------hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 0022222210 0011234455555555321 112233445544 6888999999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 172 FAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
..+..+.++|..+.+.|. ||++|||..
T Consensus 262 ~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 262 RQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 999999999999988777 999999854
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.47 E-value=1.4e-14 Score=154.35 Aligned_cols=47 Identities=30% Similarity=0.348 Sum_probs=43.1
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
+||+.+|+||+||||| +||+..+..+.++|..+.+.|+ ||++||++.
T Consensus 171 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 171 AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 6888999999999999 8999999999999999988777 999999853
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.46 E-value=3.6e-14 Score=151.15 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=41.8
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA 198 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~ 198 (454)
+||+.+|+||+||||+ +||+..+..+.++|+++.+ |. ||++||+..
T Consensus 151 ~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 151 ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI 198 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence 6888999999999999 8999999999999999976 66 999999853
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.2e-14 Score=152.44 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=86.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHH---------HHHHHHHH-hhhhhc--ccchhhhh
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLK---------INEHMHRL-WKNQVA--EKSLRSSI 107 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~---------~~~~i~~~-~~~~~~--~~t~~e~l 107 (454)
+.+++-++|+|||||||||||++|+|.+++. .|... ....... +....... .+.... .....+++
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFD--DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNI 176 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTC--CSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEe--cccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhh
Confidence 3567789999999999999999999998753 33221 1000000 00000000 000000 00000000
Q ss_pred hcccc------------CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882 108 SGWIT------------NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ- 167 (454)
Q Consensus 108 ~~~~~------------~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~- 167 (454)
..... ........+++++..+++.... ......|++++ +||+.+|+||+||||+
T Consensus 177 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts 250 (608)
T 3j16_B 177 PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL------KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250 (608)
T ss_dssp HHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGG------GSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTT
T ss_pred hhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchh------CCChHHCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 00000 0011224555666666653311 11223344443 6788999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882 168 TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP 199 (454)
Q Consensus 168 ~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P 199 (454)
+||+..+..+.++++++.+.|. ||++||+...
T Consensus 251 ~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~ 283 (608)
T 3j16_B 251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV 283 (608)
T ss_dssp TCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 8999999999999999988887 9999998543
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.39 E-value=1.3e-13 Score=160.43 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=100.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI 111 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~ 111 (454)
..++++-++|+||||||||||+++|.|..++ ..+.+.+++. ...+++.+++++|+ .....|+.+|+....
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccC
Confidence 3456788999999999999999999999874 2445555432 13445567777776 233468888874332
Q ss_pred cCCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882 112 TNLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS 178 (454)
Q Consensus 112 ~~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~ 178 (454)
.....+.......+...++.... +.+..+..-...+++++ |||+++|+||+||||| ++|+.+...+.
T Consensus 1132 ~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~ 1211 (1284)
T 3g5u_A 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211 (1284)
T ss_dssp SSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 22122333333333333332210 00111111112344443 6888999999999999 89999999999
Q ss_pred HHHHHHHhCCc-EEEEecCCCc
Q 012882 179 GIVSRLLSTGT-VLVATSNRAP 199 (454)
Q Consensus 179 ~ll~~L~~~G~-vlV~ThN~~P 199 (454)
+.+..+.+ |+ +|++||+...
T Consensus 1212 ~~l~~~~~-~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1212 EALDKARE-GRTCIVIAHRLST 1232 (1284)
T ss_dssp HHHHHHSS-SSCEEEECSCTTG
T ss_pred HHHHHhCC-CCEEEEEecCHHH
Confidence 99988654 55 9999998754
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.36 E-value=9.3e-13 Score=153.25 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=96.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||||||||||+++|.|..++ ..+.+..++. ...+++.++++.|+. .-..|+.+|+.....
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~ 489 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE 489 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC
Confidence 356788999999999999999999999874 2345544331 235566788888772 223488888743221
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
. .......+.+....+.... +.+..+..-...+++++ |||+++|+||+||||| .+|+.+...+.+
T Consensus 490 ~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 490 D--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp S--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 1 2233333333332221100 00000000111234443 6888999999999999 899999999999
Q ss_pred HHHHHHhCCc-EEEEecCC
Q 012882 180 IVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 180 ll~~L~~~G~-vlV~ThN~ 197 (454)
.+..+.+ |+ +|++||+.
T Consensus 568 ~l~~~~~-~~t~i~itH~l 585 (1284)
T 3g5u_A 568 ALDKARE-GRTTIVIAHRL 585 (1284)
T ss_dssp HHHHHHT-TSEEEEECSCH
T ss_pred HHHHHcC-CCEEEEEecCH
Confidence 9988765 55 99999974
No 55
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.34 E-value=6e-13 Score=122.87 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCcEEEeeCCCC--CCHHHHH-HHHHHHHHHHhCCcEEEEecCCCccchhcCC-------chhhhhHHHHHHHHhhcccc
Q 012882 157 GASILCFDEIQT--VDVFAIV-ALSGIVSRLLSTGTVLVATSNRAPWDLNQDG-------MQREIFQKLVAKLEKHCEII 226 (454)
Q Consensus 157 ~p~lL~LDEp~~--lD~~~a~-~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~-------l~r~~F~~~I~~L~~~~~vv 226 (454)
++++|||||+.. ++..... .+..++......+..+|+|+|.+|++|...- .+.....+++++|.++|.++
T Consensus 115 ~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~~~~~~~~~~~~~~~~~~~~Rl~~~~~~~ 194 (202)
T 2w58_A 115 KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMERIRYLAYPI 194 (202)
T ss_dssp HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHHHHHHEEEE
T ss_pred CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHhhhccCcchhHHHHHHHHHHHHhceEE
Confidence 478999999963 3322233 4556777776667778888899999987631 23335678899999999999
Q ss_pred ccCCchhhh
Q 012882 227 PIGSEVDYR 235 (454)
Q Consensus 227 ~l~~~~DyR 235 (454)
.++++ |||
T Consensus 195 ~~~g~-~~R 202 (202)
T 2w58_A 195 EITGP-NRR 202 (202)
T ss_dssp ECCSC-CCC
T ss_pred eecCC-CCC
Confidence 99987 887
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.34 E-value=1.3e-13 Score=160.68 Aligned_cols=157 Identities=14% Similarity=0.084 Sum_probs=105.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~ 114 (454)
.++++-++|+|++|||||||+++|.+..++ ..|...+...+. ..++++.+.+++|+ ..-..|+++|+..+....
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~ 1180 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCC-SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccC-CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCC
Confidence 356788999999999999999999999875 244444433221 34677788888887 334568999984433323
Q ss_pred CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV 181 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll 181 (454)
..+.+...+.+...++.+.- +.+..+..-...+++++ |||+++|+||+||||| .+|..+...+.+.|
T Consensus 1181 ~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l 1260 (1321)
T 4f4c_A 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260 (1321)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 33445555555555543310 11111111112234443 7888999999999999 89999999999998
Q ss_pred HHHHhCCcEEEEecCC
Q 012882 182 SRLLSTGTVLVATSNR 197 (454)
Q Consensus 182 ~~L~~~G~vlV~ThN~ 197 (454)
+++++..++|++||..
T Consensus 1261 ~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1261 DRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp TTTSSSSEEEEECSSS
T ss_pred HHHcCCCEEEEeccCH
Confidence 8877644589999863
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.31 E-value=2.5e-12 Score=144.28 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=87.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHh-CCCCc-ccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhccccCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYG-ATEGI-VKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWITNL 114 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g-~l~~~-~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~~~ 114 (454)
...+.-++|+|||||||||||++|+| .+.+. .....++ .++.+. ....+|+.+++......
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~-------------~~v~q~~~~~~~~ltv~e~l~~~~~~- 523 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-------------VYVEHDIDGTHSDTSVLDFVFESGVG- 523 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCE-------------EETTCCCCCCCTTSBHHHHHHTTCSS-
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeE-------------EEEcccccccccCCcHHHHHHHhhcC-
Confidence 34677899999999999999999984 33210 0011111 122221 23445777776431111
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~ 186 (454)
. ...++.++..+++... ........|++++ ++|+.+|+||+||||+ +||+..+..|.++|..
T Consensus 524 -~-~~~v~~~L~~lgL~~~-----~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--- 593 (986)
T 2iw3_A 524 -T-KEAIKDKLIEFGFTDE-----MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--- 593 (986)
T ss_dssp -C-HHHHHHHHHHTTCCHH-----HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---
T ss_pred -H-HHHHHHHHHHcCCChh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---
Confidence 1 4556667777766211 0111223445554 6888999999999999 8999999999999988
Q ss_pred CCc-EEEEecCCC
Q 012882 187 TGT-VLVATSNRA 198 (454)
Q Consensus 187 ~G~-vlV~ThN~~ 198 (454)
.|. +|++||+..
T Consensus 594 ~g~tvIivSHdl~ 606 (986)
T 2iw3_A 594 CGITSITISHDSV 606 (986)
T ss_dssp SCSEEEEECSCHH
T ss_pred CCCEEEEEECCHH
Confidence 465 999999854
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.30 E-value=9.4e-13 Score=143.88 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=42.6
Q ss_pred hhhccCCc--EEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGAS--ILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~--lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+||+.+|+ ||+||||+ +||+..+..+.++|..+.+.|. ||++|||.
T Consensus 215 rAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 215 TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 68889988 99999999 8999999999999999988887 99999985
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.26 E-value=3.6e-12 Score=143.00 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=37.7
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
++|+.+|+||+||||+ +||+.+...+.++|..+ .+.||++|||.
T Consensus 914 rAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~ 958 (986)
T 2iw3_A 914 AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958 (986)
T ss_dssp HHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCH
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCH
Confidence 6888999999999999 89999988888877655 34599999984
No 60
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.26 E-value=3.9e-13 Score=126.13 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=33.9
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccc
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWD 201 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~d 201 (454)
+||+.+|+||+||||+ + .+..+.++|.++ +.|. +| +||+....+
T Consensus 117 raL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 117 RGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp TTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-----
T ss_pred HHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHh
Confidence 7889999999999999 6 777888888888 6677 66 999976444
No 61
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.26 E-value=8.4e-12 Score=145.60 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=102.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT 112 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~ 112 (454)
.++++-++|+||+|||||||+++|.|..++ ..+.+..++. ...+++.++++.|+ ..-+.|+.+|+..+..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence 356788999999999999999999999974 2345544431 34677889999887 3456689999833211
Q ss_pred CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG 179 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ 179 (454)
..+.+.+.+.+....+...- +.+-.+..-...+++++ ||++++|+||+||||+ .+|..+...+.+
T Consensus 518 --~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~ 595 (1321)
T 4f4c_A 518 --GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595 (1321)
T ss_dssp --TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred --cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence 12344444444443332210 00000111111233333 7888999999999999 899999999999
Q ss_pred HHHHHHhCCcEEEEecCCC
Q 012882 180 IVSRLLSTGTVLVATSNRA 198 (454)
Q Consensus 180 ll~~L~~~G~vlV~ThN~~ 198 (454)
.|..+.+..++|++||+..
T Consensus 596 ~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 596 ALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHHTTSEEEEECSCTT
T ss_pred HHHHHhCCCEEEEEcccHH
Confidence 9998876545999999753
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.25 E-value=2.5e-12 Score=116.41 Aligned_cols=46 Identities=7% Similarity=-0.020 Sum_probs=39.2
Q ss_pred hhhccCCcEEEeeCCC-CCCHH----------------HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVF----------------AIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~----------------~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++++.+|++|+||||+ ++|+. ....+.+++..+.++|. +|++|||.
T Consensus 96 ral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 96 KDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp HHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred HHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 4556899999999999 89999 55888888888877787 99999984
No 63
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.24 E-value=4.2e-12 Score=112.74 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=41.5
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhc
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQ 204 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~ 204 (454)
.+|++||+|||+.++...+..|.++++.+.+.|. ++|+|||.+|.+|..
T Consensus 82 ~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~ 131 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVI 131 (149)
T ss_dssp GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSC
T ss_pred hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccc
Confidence 4699999999997766668899999999988877 488899999988764
No 64
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.21 E-value=2.6e-12 Score=117.45 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=43.6
Q ss_pred hccCCcEEEeeC--CC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhh--ccccc
Q 012882 154 DQRGASILCFDE--IQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKH--CEIIP 227 (454)
Q Consensus 154 L~~~p~lL~LDE--p~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~--~~vv~ 227 (454)
++.+|++|+||| |+ ++|+.....+.+++.. .+. +|++||..+. .++++.+..+ |++++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~-------------~~~~~~i~~r~~~~i~~ 159 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDV-------------HPLVKEIRRLPGAVLIE 159 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCC-------------SHHHHHHHTCTTCEEEE
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCC-------------chHHHHHHhcCCcEEEE
Confidence 568999999999 99 8999988888877765 466 8888873221 1345556555 67776
Q ss_pred cCC
Q 012882 228 IGS 230 (454)
Q Consensus 228 l~~ 230 (454)
+..
T Consensus 160 ~~~ 162 (178)
T 1ye8_A 160 LTP 162 (178)
T ss_dssp CCT
T ss_pred ecC
Confidence 554
No 65
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.18 E-value=5.5e-12 Score=125.15 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=56.0
Q ss_pred cCCcEEEeeCCCC--CCHHHHH-HHHHHHHHHHhCCcEEEEecCCCccchhcC------CchhhhhHHHHHHHHhhcccc
Q 012882 156 RGASILCFDEIQT--VDVFAIV-ALSGIVSRLLSTGTVLVATSNRAPWDLNQD------GMQREIFQKLVAKLEKHCEII 226 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~-~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~------~l~r~~F~~~I~~L~~~~~vv 226 (454)
.+++||||||+.. ++...+. .+..++......++.+|+|+|.+|++|... |.++....+++++|.++|.++
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i 292 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREF 292 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTCC--------CCCCSHHHHHHHHEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEE
Confidence 4689999999973 4433333 455678776555667888999999999874 222334557899999999999
Q ss_pred ccCCchhhhh
Q 012882 227 PIGSEVDYRR 236 (454)
Q Consensus 227 ~l~~~~DyR~ 236 (454)
.++|+ +||.
T Consensus 293 ~l~g~-s~R~ 301 (308)
T 2qgz_A 293 HLEGA-NRRL 301 (308)
T ss_dssp ECCSC-CCC-
T ss_pred EecCC-cccc
Confidence 99997 9997
No 66
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.14 E-value=3.2e-11 Score=131.75 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=41.6
Q ss_pred hhhccCC---cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGA---SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p---~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+||+.+| +||+||||+ +||+.++..+.++|.++.+.|. ||++|||.
T Consensus 556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6777776 599999999 8999999999999999988887 99999985
No 67
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.13 E-value=1.2e-12 Score=121.98 Aligned_cols=46 Identities=9% Similarity=-0.166 Sum_probs=39.0
Q ss_pred hhhccCCcEEEeeCCC-CC----CHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882 152 HADQRGASILCFDEIQ-TV----DVFAIVALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~l----D~~~a~~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
.+|+.+|++++||||+ ++ |+..+..+.+++.++.. .|. ++++|||.
T Consensus 136 S~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl 188 (207)
T 1znw_A 136 TVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL 188 (207)
T ss_dssp EEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH
Confidence 3788999999999998 65 78888999999999974 466 99999984
No 68
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.11 E-value=1.8e-10 Score=118.15 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=40.0
Q ss_pred hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
++|+.+| ++|+||||+ +||+..+..|.++|..+. +|. ||++||+
T Consensus 308 ~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~ 355 (415)
T 4aby_A 308 VSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL 355 (415)
T ss_dssp HHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred HHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 5778899 999999999 899999999999999997 455 9999997
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=1.7e-10 Score=115.32 Aligned_cols=61 Identities=11% Similarity=0.218 Sum_probs=43.5
Q ss_pred ccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 155 QRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 155 ~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
..+|+++++|||+.+|...+..|.+++.+... ++ +|++||+.. .+ +..|..+|.++.+...
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~-~~~~Il~t~~~~--~l-------------~~~l~sR~~~~~~~~~ 193 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYSK-NIRLIMVCDSMS--PI-------------IAPIKSQCLLIRCPAP 193 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHSTT-TEEEEEEESCSC--SS-------------CHHHHTTSEEEECCCC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhcC-CCEEEEEeCCHH--HH-------------HHHHHhhceEEecCCc
Confidence 36899999999999999999999988888644 45 666666532 11 2346678877777554
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.08 E-value=5e-10 Score=113.61 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=39.2
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+|++|+||||+ +||+.++..+.++|..+.+.|. ||++||+.
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~ 345 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR 345 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 799999999999 8999999999999999988887 99999984
No 71
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.08 E-value=1e-10 Score=110.66 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=35.5
Q ss_pred cCCcEEEeeCCC-CCC-----HHHHHHHHHHHHHHHhCCc-EEEEecCCCcc
Q 012882 156 RGASILCFDEIQ-TVD-----VFAIVALSGIVSRLLSTGT-VLVATSNRAPW 200 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD-----~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~ 200 (454)
.+|++|++|||+ ++| ...+..+.+++..+.+.|+ ||++||+....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 689999999999 665 5666669999999988888 88889886543
No 72
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=8.5e-10 Score=112.79 Aligned_cols=141 Identities=23% Similarity=0.298 Sum_probs=88.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
...+|+|+.||||+|||||+|.+++++.+..+ -..+...++.. +..+.+.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~sk~vGese~~vr----------------------- 231 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK---FIRVSGAELVQKYIGEGSRMVR----------------------- 231 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE---EEEEEGGGGSCSSTTHHHHHHH-----------------------
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC---ceEEEhHHhhccccchHHHHHH-----------------------
Confidence 45679999999999999999999999976421 12232222110 0000000
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCC-----------CHHHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV-----------DVFAIVALSGIVSR 183 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~l-----------D~~~a~~L~~ll~~ 183 (454)
.+...|+. ..|.||+|||+..+ |......+..+|..
T Consensus 232 ------------------------~lF~~Ar~---------~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 278 (405)
T 4b4t_J 232 ------------------------ELFVMARE---------HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ 278 (405)
T ss_dssp ------------------------HHHHHHHH---------TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHH---------hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh
Confidence 01223443 46999999999721 22344567777777
Q ss_pred HHh----CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882 184 LLS----TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 184 L~~----~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
+-. .++++|+|+|++ |+-+.++++.+..++| ...+++.++.-+.++...|+....
T Consensus 279 lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA 347 (405)
T 4b4t_J 279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVA 347 (405)
T ss_dssp HHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHH
T ss_pred hhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHH
Confidence 642 255888888975 3445556776655443 356677777777887777887654
No 73
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.4e-11 Score=128.62 Aligned_cols=139 Identities=8% Similarity=0.007 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccC-c-eEEEechhHHHHHHHHHHHhhhh-----hcccchhhhhhcccc-
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKH-R-QRFHFHEAMLKINEHMHRLWKNQ-----VAEKSLRSSISGWIT- 112 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~-k-~rv~f~~f~~~~~~~i~~~~~~~-----~~~~t~~e~l~~~~~- 112 (454)
..+.-++|+||||||||||+++|+|..++ ..+ . ..+.. +..+.+.+++|.. ...+++.++++....
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-~~G~~pI~vdg-----~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~ 209 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALK-FNAYQPLYINL-----DPQQPIFTVPGCISATPISDILDAQLPTWGQSLT 209 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHH-HHCCCCEEEEC-----CTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccc-cCCceeEEEcC-----CccCCeeeeccchhhcccccccchhhhhcccccc
Confidence 35667999999999999999999998863 233 3 33332 1223345555542 122355555532110
Q ss_pred CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hh--hccCCcE----EEeeC-CC-CCCHHHHHHH
Q 012882 113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HA--DQRGASI----LCFDE-IQ-TVDVFAIVAL 177 (454)
Q Consensus 113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rA--L~~~p~l----L~LDE-p~-~lD~~~a~~L 177 (454)
........+..++..+++... .. ...+++++ ++ |+.+|++ |+||| |+ ++|+. ...|
T Consensus 210 ~~~~~~~~~~~ll~~~gl~~~------~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l 280 (460)
T 2npi_A 210 SGATLLHNKQPMVKNFGLERI------NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL 280 (460)
T ss_dssp SSCCSSCCBCCEECCCCSSSG------GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH
T ss_pred cCcchHHHHHHHHHHhCCCcc------cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH
Confidence 000000011111111111110 00 12222222 45 7799999 99999 99 79998 6666
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 012882 178 SGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 178 ~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+++.++ |. ++++||+.
T Consensus 281 ~~l~~~~---~~tviiVth~~ 298 (460)
T 2npi_A 281 HHIIEKL---NVNIMLVLCSE 298 (460)
T ss_dssp HHHHHHT---TCCEEEEECCS
T ss_pred HHHHHHh---CCCEEEEEccC
Confidence 6666553 55 99999985
No 74
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.97 E-value=3.3e-10 Score=125.82 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.6
Q ss_pred hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+ |+||+||||| +||+.+...+.++|.++.+.|. |||+|||.
T Consensus 743 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 743 TELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp HTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 577775 7999999999 8999999999999999998887 99999984
No 75
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.96 E-value=4.1e-10 Score=127.86 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=71.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHH-HHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMH-RLWKNQVAEKSLRSSISGWITNLPFDSKVM 121 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~-~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 121 (454)
++.++|+||||+||||||+++ |.+. + ...++ +++++. ..+++.+.++......
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~--~---------------~aqiG~~Vpq~~-~~l~v~d~I~~rig~~------- 842 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA--V---------------MAQMGCYVPAEV-CRLTPIDRVFTRLGAS------- 842 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH--H---------------HHTTTCCEESSE-EEECCCSBEEEECC---------
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH--H---------------HhheeEEeccCc-CCCCHHHHHHHHcCCH-------
Confidence 577999999999999999999 8653 1 01122 333321 2344444444322110
Q ss_pred HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHH-HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882 122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAI-VALSGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a-~~L~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+.+.. +.... ..-+..++. .++++.+|+||+||||+ ++|+.+. .+++.++..+.++ |. +|++||+.
T Consensus 843 d~~~~--~~stf---~~em~~~a~-----al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~ 912 (1022)
T 2o8b_B 843 DRIMS--GESTF---FVELSETAS-----ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 912 (1022)
T ss_dssp ---------CHH---HHHHHHHHH-----HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred HHHhh--chhhh---HHHHHHHHH-----HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 00000 00000 000011111 13556899999999999 9999984 6688999999876 77 99999985
Q ss_pred C
Q 012882 198 A 198 (454)
Q Consensus 198 ~ 198 (454)
.
T Consensus 913 e 913 (1022)
T 2o8b_B 913 S 913 (1022)
T ss_dssp H
T ss_pred H
Confidence 3
No 76
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.96 E-value=2.1e-09 Score=120.41 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=40.8
Q ss_pred hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+++ |+||+||||| +||+.+...|.++|.++.++|. ||++|||.
T Consensus 818 raL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL 868 (916)
T 3pih_A 818 SELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL 868 (916)
T ss_dssp HHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 566665 4799999999 8999999999999999998887 99999983
No 77
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.95 E-value=7.1e-10 Score=103.55 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=29.2
Q ss_pred hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++.+++. ..+++.-+.|+||||||||||+++|++..
T Consensus 12 ~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345665532 34567779999999999999999999954
No 78
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.9e-09 Score=109.25 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=85.6
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
...+|+|+.||||+|||||+|.+++++.+..+ -..+...++.. .. ..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~---~~~v~~s~l~s-------k~----------------------~G- 257 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN---FIFSPASGIVD-------KY----------------------IG- 257 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGTCC-------SS----------------------SS-
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehhhhcc-------cc----------------------ch-
Confidence 45689999999999999999999999976421 12222211110 00 00
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-----------CCHHHHHHHHHHHHHHHh-
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRLLS- 186 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-----------lD~~~a~~L~~ll~~L~~- 186 (454)
.....+ ..+...|+. ..|.||++||+.. .|......+..+|..+-.
T Consensus 258 ese~~i-------------r~~F~~A~~---------~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 258 ESARII-------------REMFAYAKE---------HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp HHHHHH-------------HHHHHHHHH---------SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHH-------------HHHHHHHHh---------cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 000000 001223333 5799999999972 133344566677777732
Q ss_pred ---CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882 187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.++++|+|+|++ |+-+.++++.+..++| ...+++.++.-+.+.+..|+....
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA 380 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAV 380 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHH
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence 245888888974 3444455666554433 345677777777777777887654
No 79
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.1e-09 Score=111.13 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=85.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
..++|+|+.||||+|||||+|++++++.+..+ -..+....+.. .. ...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~~-------~~----------------------vGe 258 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAAPQLVQ-------MY----------------------IGE 258 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGCS-------SC----------------------SSH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEehhhhhh-------cc----------------------cch
Confidence 45689999999999999999999999976421 11222211110 00 000
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-----------CCHHHHHHHHHHHHHHHh-
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRLLS- 186 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-----------lD~~~a~~L~~ll~~L~~- 186 (454)
....+ ..+...|+. ..|.||++||... -+......+..+|..+-.
T Consensus 259 -se~~i-------------r~lF~~A~~---------~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 259 -GAKLV-------------RDAFALAKE---------KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp -HHHHH-------------HHHHHHHHH---------HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred -HHHHH-------------HHHHHHHHh---------cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 00000 011223443 3599999999851 123334556667776632
Q ss_pred ---CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882 187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.++++|+|+|++ |+-+.++++.+..++| ...+++.++.-+.++...|+....
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA 380 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA 380 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence 355888898975 3444556666654443 345677777777777777887654
No 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.88 E-value=4.6e-09 Score=117.66 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=41.1
Q ss_pred hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+ |+||+||||| +||+.+...|.++|.++.+.|. |||+|||.
T Consensus 876 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl 926 (993)
T 2ygr_A 876 SELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL 926 (993)
T ss_dssp HHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 567765 5999999999 8999999999999999988887 99999984
No 81
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.87 E-value=2.3e-09 Score=119.73 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=41.2
Q ss_pred hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+ |+||+||||| +||+.+...|.++|..+.+.|. ||++|||.
T Consensus 858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl 908 (972)
T 2r6f_A 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 908 (972)
T ss_dssp HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 567765 5999999999 8999999999999999988887 99999984
No 82
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.87 E-value=7.9e-09 Score=116.11 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=37.8
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHh-CCc-EEEEecCCCc
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLS-TGT-VLVATSNRAP 199 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~-~G~-vlV~ThN~~P 199 (454)
+.+|+||+||||+ ++|+.+...+ +.++..+.+ .|. +|++||+..-
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el 787 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL 787 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH
Confidence 4789999999999 9999988777 788888876 477 9999998533
No 83
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.87 E-value=3.9e-09 Score=108.45 Aligned_cols=141 Identities=21% Similarity=0.279 Sum_probs=85.5
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKNQVAEKSLRSSISGWITNL 114 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~ 114 (454)
..++|+|+.||||+|||||+|.+++++.+..+ -..+...++.. +..+.+.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~~s~l~sk~vGesek~ir----------------------- 265 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIVGSELIQKYLGDGPRLCR----------------------- 265 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEESGGGCCSSSSHHHHHHH-----------------------
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEEHHHhhhccCchHHHHHH-----------------------
Confidence 45689999999999999999999999876421 12222221110 0000000
Q ss_pred CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-----------CCHHHHHHHHHHHHH
Q 012882 115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSR 183 (454)
Q Consensus 115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-----------lD~~~a~~L~~ll~~ 183 (454)
.+...|+. ..|.||++||+.. -+......+..+|..
T Consensus 266 ------------------------~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~ 312 (437)
T 4b4t_I 266 ------------------------QIFKVAGE---------NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 312 (437)
T ss_dssp ------------------------HHHHHHHH---------TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHh---------cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH
Confidence 11223443 4699999999872 123345566677776
Q ss_pred HHh----CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882 184 LLS----TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 184 L~~----~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
+-. .++++|+|+|++ |+-+.++++.+..++| ...+|+.++.-+.++...|+....
T Consensus 313 lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA 381 (437)
T 4b4t_I 313 LDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV 381 (437)
T ss_dssp HHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHH
T ss_pred hhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence 642 245888888974 3444456666544432 345677777777777777877654
No 84
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.86 E-value=2e-08 Score=100.61 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=40.8
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++++.+|++|+||||+ +||+..+..+.++|..+.+.|. +|++||+.
T Consensus 267 ~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~ 314 (339)
T 3qkt_A 267 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314 (339)
T ss_dssp HHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred HHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence 4567899999999999 8999999999999999877776 88999983
No 85
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.86 E-value=8e-10 Score=107.55 Aligned_cols=135 Identities=9% Similarity=0.089 Sum_probs=64.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH---HHHHHHHHHhhh--hhcccchhhhh-hccccCCCCCh
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML---KINEHMHRLWKN--QVAEKSLRSSI-SGWITNLPFDS 118 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~---~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~~~~~~ 118 (454)
.++|+||||||||||+++|+|...+. .+ .+.+.+... ...+.++++.|+ ....+|+.+++ ++.........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~-~G--~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR-KA--SSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-CC--ccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 47899999999999999999987532 22 332221100 000112223332 23345666665 22111111111
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhh---hhc-cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQH---ADQ-RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVA 193 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~r---AL~-~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ 193 (454)
......+. ..........++++++ +++ .-+.++++|||+ ++|+.+. +++..+.+...+|++
T Consensus 81 ~~i~~~~~----------~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~----~~l~~L~~~~~vI~V 146 (270)
T 3sop_A 81 EPIEKYIN----------EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL----EFMKHLSKVVNIIPV 146 (270)
T ss_dssp HHHHHHHH----------HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH----HHHHHHHTTSEEEEE
T ss_pred HHHHHHHH----------HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH----HHHHHHHhcCcEEEE
Confidence 22222221 0112345556666652 111 134599999998 8999884 445556555235555
Q ss_pred ecC
Q 012882 194 TSN 196 (454)
Q Consensus 194 ThN 196 (454)
.+.
T Consensus 147 i~K 149 (270)
T 3sop_A 147 IAK 149 (270)
T ss_dssp ETT
T ss_pred Eec
Confidence 543
No 86
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.85 E-value=3.8e-09 Score=118.42 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=37.5
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHHH-HHHHHHHh-CCc-EEEEecCCC
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVALS-GIVSRLLS-TGT-VLVATSNRA 198 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L~-~ll~~L~~-~G~-vlV~ThN~~ 198 (454)
+.+|+||+||||+ ++|+.+...+. .++..+.+ .|. +|++||+..
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 3789999999999 99999888876 88888865 577 999999854
No 87
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=9.9e-09 Score=105.99 Aligned_cols=145 Identities=23% Similarity=0.286 Sum_probs=85.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
+..+|+|+.||||+|||||+|.+++++.+..+ -..+...++.. .. . .
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~~l~~-------~~---~--------------------G 248 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGSEFVH-------KY---L--------------------G 248 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGGGTCC-------SS---C--------------------S
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecchhhc-------cc---c--------------------c
Confidence 45689999999999999999999999876421 12222221110 00 0 0
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHHHh-
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRLLS- 186 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L~~- 186 (454)
.....+ ..+...|+. ..|.|+++||.. +-|......+..+|..+-.
T Consensus 249 e~e~~i-------------r~lF~~A~~---------~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 249 EGPRMV-------------RDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp HHHHHH-------------HHHHHHHHH---------TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hhHHHH-------------HHHHHHHHH---------cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 000000 001223433 469999999984 1233445667777777642
Q ss_pred ---CCcEEEEecCCC----ccchhcCCchhhhhHH-------HHHHHHhhccccccCCchhhhhhc
Q 012882 187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK-------LVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~-------~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.|+++|+|+|++ |+-+.++++.+...+| ...+++.++.-+.+....|+....
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA 372 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence 356888888875 4445556666654332 234566666666676777776543
No 88
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=8e-09 Score=107.06 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=85.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~ 118 (454)
...+|+|+.|+||+|||||+|.+++++.+..+ -..+....+.. . ....
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~s~L~s-----------k------------------~vGe 286 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIGSELVQ-----------K------------------YVGE 286 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGCC-----------C------------------SSSH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEhHHhhc-----------c------------------cCCH
Confidence 34689999999999999999999999976421 12222221110 0 0000
Q ss_pred HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCC-----------CHHHHHHHHHHHHHHHh-
Q 012882 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV-----------DVFAIVALSGIVSRLLS- 186 (454)
Q Consensus 119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~l-----------D~~~a~~L~~ll~~L~~- 186 (454)
....+ ..+...|+. ..|.||++||...+ +......+..+|..+-.
T Consensus 287 -sek~i-------------r~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 287 -GARMV-------------RELFEMART---------KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp -HHHHH-------------HHHHHHHHH---------TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred -HHHHH-------------HHHHHHHHh---------cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 00000 001223333 46999999999721 12334456666766632
Q ss_pred ---CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882 187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI 238 (454)
Q Consensus 187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~ 238 (454)
.++++|+|+|++ |+-+.++++.+..++| ...+|+.++.-+.++...|+....
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA 408 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELIS 408 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence 245788888975 3334456676654433 356677777777787777887654
No 89
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.81 E-value=1.8e-08 Score=99.70 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=37.3
Q ss_pred cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882 156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 203 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy 203 (454)
.++.+|++||++. .+......+..++..+.+.|..+|+|++.+|.++.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 3589999999994 44467788889999988888866667777777653
No 90
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.80 E-value=1.8e-08 Score=104.61 Aligned_cols=47 Identities=26% Similarity=0.354 Sum_probs=37.0
Q ss_pred CCcEEEeeCCC-CC-CHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882 157 GASILCFDEIQ-TV-DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 203 (454)
Q Consensus 157 ~p~lL~LDEp~-~l-D~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy 203 (454)
++++|++||++ .. +......+..++..+.+.|..+|+|+|.+|.++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 79999999999 33 3367788899999998888866667777777753
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.75 E-value=5.6e-09 Score=102.17 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=32.0
Q ss_pred hhccCCcEEEeeCCCC-C------CH-HHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882 153 ADQRGASILCFDEIQT-V------DV-FAIVALSGIVSRLLS-TGT-VLVATSNR 197 (454)
Q Consensus 153 AL~~~p~lL~LDEp~~-l------D~-~~a~~L~~ll~~L~~-~G~-vlV~ThN~ 197 (454)
++..+|++|++|||+. + |. .....+.+.|..+.+ .|+ ||++||+.
T Consensus 143 ~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 143 RSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 4568999999999994 3 43 455667777888764 477 88888875
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.74 E-value=3.1e-09 Score=102.85 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++.-++|+||||||||||++++.|.++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3556689999999999999999999875
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.73 E-value=1.6e-08 Score=107.25 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=80.2
Q ss_pred CCCCeEEEEEcCCCChHHHHHHH--HHhCCCCcccCceEEEechhHHHH---HHHHHHHhhhhhcccchhhhhhc-cccC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDM--FYGATEGIVKHRQRFHFHEAMLKI---NEHMHRLWKNQVAEKSLRSSISG-WITN 113 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~l--l~g~l~~~~~~k~rv~f~~f~~~~---~~~i~~~~~~~~~~~t~~e~l~~-~~~~ 113 (454)
.+.+.-++|+||||||||||+++ +.|..++ ..+...+.+.+..... .+.++++.|+... .++++. ....
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~----~~~l~~~~~~~ 110 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEETPQDIIKNARSFGWDLAKLVD----EGKLFILDASP 110 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHH----TTSEEEEECCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhc----cCcEEEEecCc
Confidence 34677899999999999999999 5687752 1344555554422111 1223333332110 011110 0000
Q ss_pred CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC------CCHHHHHHHHHHHHHHHhC
Q 012882 114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT------VDVFAIVALSGIVSRLLST 187 (454)
Q Consensus 114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~------lD~~~a~~L~~ll~~L~~~ 187 (454)
... ...++..+++ ..........+++ .+|++|+||||+. +|+..+..+.+++..+.+.
T Consensus 111 ---~~~-~~~~l~~~~l------~~~~~~~~~~LS~------g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~ 174 (525)
T 1tf7_A 111 ---DPE-GQEVVGGFDL------SALIERINYAIQK------YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI 174 (525)
T ss_dssp ---CSS-CCSCCSSHHH------HHHHHHHHHHHHH------HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---ccc-hhhhhcccCH------HHHHHHHHHHHHH------cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC
Confidence 000 0001111111 1223445555554 4799999999982 5889999999999999888
Q ss_pred Cc-EEEEecCCCc
Q 012882 188 GT-VLVATSNRAP 199 (454)
Q Consensus 188 G~-vlV~ThN~~P 199 (454)
|+ +|++||+...
T Consensus 175 g~tvl~itH~~~~ 187 (525)
T 1tf7_A 175 GATTVMTTERIEE 187 (525)
T ss_dssp TCEEEEEEECSSS
T ss_pred CCEEEEEecCCCC
Confidence 88 8889998654
No 94
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.72 E-value=2.8e-08 Score=98.81 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=36.2
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+|++|+||||+ +||+.....+.+++..+. .|. +|++||+.
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~ 282 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK 282 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence 678999999999 899999999999999984 465 88899873
No 95
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.71 E-value=2.4e-08 Score=92.89 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=32.7
Q ss_pred cCCc--EEEeeCCC-CC--CHHHHHHHHHHHHHHH-hCCc-EEEEecCC
Q 012882 156 RGAS--ILCFDEIQ-TV--DVFAIVALSGIVSRLL-STGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~--lL~LDEp~-~l--D~~~a~~L~~ll~~L~-~~G~-vlV~ThN~ 197 (454)
.+|+ +|++|||+ .+ |+.....+.+.|..+. +.|+ +|++||+.
T Consensus 120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4799 99999999 45 8888888888888885 4587 88888875
No 96
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.71 E-value=1.1e-09 Score=112.77 Aligned_cols=144 Identities=11% Similarity=0.037 Sum_probs=76.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChHHHH
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSKVME 122 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~~~e 122 (454)
.-++|+|+||||||||+++|.|..++. .+...+.... .. +..++.+. ..+.+++.+++-.. ......+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~~~g~~----~t-~~~~v~q~~~~~~ltv~D~~g~~-----~~~~~~~ 138 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEE-EGAAKTGVVE----VT-MERHPYKHPNIPNVVFWDLPGIG-----STNFPPD 138 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCCCCC---------CCCEEEECSSCTTEEEEECCCGG-----GSSCCHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcc-CceEEECCee----cc-eeEEeccccccCCeeehHhhccc-----chHHHHH
Confidence 378999999999999999999987642 2222211110 00 00122222 11233444433111 1112345
Q ss_pred HHHHHHhhhhHHh------h--cchHHHHHHHhhhhh---hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH-----
Q 012882 123 WVAAEEKYKQEVQ------M--KNILPAVADKFLVDQ---HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL----- 185 (454)
Q Consensus 123 ~ll~~~~l~~~~~------~--~~~l~~va~~l~~~~---rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~----- 185 (454)
+++..+++..... . ......+++.+.... .....+|++|++|||+ ++|+..+..+.+++..+.
T Consensus 139 ~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 139 TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp HHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555532100 0 011122333332100 0111289999999999 899999999999998884
Q ss_pred hCC----c-EEEEecCCC
Q 012882 186 STG----T-VLVATSNRA 198 (454)
Q Consensus 186 ~~G----~-vlV~ThN~~ 198 (454)
+.| . ++|+||+..
T Consensus 219 ~~g~~~~~iiliSsh~l~ 236 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVC 236 (413)
T ss_dssp HTTCSSCCEEECCTTCTT
T ss_pred hcCCCCCcEEEEecCcCC
Confidence 333 4 556666543
No 97
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.71 E-value=2.9e-09 Score=100.39 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
+.++-++|+||||||||||+++|.|..++
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45677999999999999999999998863
No 98
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.70 E-value=2e-08 Score=111.37 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=36.4
Q ss_pred ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhC-Cc-EEEEecCC
Q 012882 155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLST-GT-VLVATSNR 197 (454)
Q Consensus 155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~-G~-vlV~ThN~ 197 (454)
+.+|+||+||||+ ++|+.+...+ ..++..+.+. |. +|++||+.
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~ 730 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 730 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence 4799999999999 8998777665 7889999874 77 99999985
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.66 E-value=2.7e-08 Score=96.58 Aligned_cols=46 Identities=13% Similarity=0.292 Sum_probs=32.4
Q ss_pred hhccCCcEEEeeCCC---CCCHHH---HHHHHHHHHHHH-hCCc-EEEEecCCC
Q 012882 153 ADQRGASILCFDEIQ---TVDVFA---IVALSGIVSRLL-STGT-VLVATSNRA 198 (454)
Q Consensus 153 AL~~~p~lL~LDEp~---~lD~~~---a~~L~~ll~~L~-~~G~-vlV~ThN~~ 198 (454)
+++.+|++|++|||+ ++|... ...+.+.|..+. +.|+ ||+++|+..
T Consensus 129 ~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 129 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 345789999999999 367643 366667777775 4587 888888753
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.65 E-value=6.8e-09 Score=114.56 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
++.++|+||||+||||||++++|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 6779999999999999999999854
No 101
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.65 E-value=8.7e-09 Score=104.13 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.-++|.||||||||||++++.|.++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 3488999999999999999999875
No 102
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.62 E-value=1.7e-08 Score=99.74 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|.-++|+||||||||||++.|+|.++
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567799999999999999999999875
No 103
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.62 E-value=4.8e-08 Score=103.56 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=39.1
Q ss_pred hhccCCcEEEeeCCC-CCCHH-----HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 153 ADQRGASILCFDEIQ-TVDVF-----AIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 153 AL~~~p~lL~LDEp~-~lD~~-----~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++..+|++|++| |+ ++|.. .+..+.+++..+.+.|+ +|++||+.
T Consensus 367 ~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 367 INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 445899999999 99 89998 89999999999998888 88889886
No 104
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.62 E-value=2.1e-08 Score=93.59 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=35.2
Q ss_pred cCCcEEEeeCCCCCC--HHHHHHHHHHHHHHHhCCcE-EEEecCCCccchh
Q 012882 156 RGASILCFDEIQTVD--VFAIVALSGIVSRLLSTGTV-LVATSNRAPWDLN 203 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD--~~~a~~L~~ll~~L~~~G~v-lV~ThN~~P~dLy 203 (454)
.++.+|++||+..++ ......|..++..+.+.+.+ +|+|+|..|.++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 458999999999443 33477788888888877764 7777777776543
No 105
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.60 E-value=1.6e-08 Score=101.18 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
+++.++|+||||||||||+++|+|.+++
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4567999999999999999999999874
No 106
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.58 E-value=1e-07 Score=99.86 Aligned_cols=29 Identities=38% Similarity=0.658 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...|+|++|+||+|+|||||++++++...
T Consensus 46 ~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 46 ARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999998653
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.58 E-value=6.5e-09 Score=112.24 Aligned_cols=46 Identities=9% Similarity=0.009 Sum_probs=36.5
Q ss_pred ccCCcEEEeeCC------C-CCCHHHHHHHHHHHHHHHhC--Cc-EEEEecCCCcc
Q 012882 155 QRGASILCFDEI------Q-TVDVFAIVALSGIVSRLLST--GT-VLVATSNRAPW 200 (454)
Q Consensus 155 ~~~p~lL~LDEp------~-~lD~~~a~~L~~ll~~L~~~--G~-vlV~ThN~~P~ 200 (454)
...|+++++||| + ++|......+.+++..+... +. ++++|||....
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 357999999999 7 79999999999999997543 45 77788886544
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.56 E-value=1.9e-07 Score=93.94 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=29.1
Q ss_pred hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++.+++- ..+.+.-+.|+||||||||||+..|++..
T Consensus 119 ~LD~lL~g---gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTS---SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35555542 34566779999999999999999999976
No 109
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.55 E-value=1.1e-07 Score=83.16 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=37.8
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCC
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDG 206 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~ 206 (454)
+..+|+|||+..++......|.+++......++.+|+|+|+++.++ ..+
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~-~~~ 123 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSD-GIS 123 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC---C
T ss_pred CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHH-HhC
Confidence 3579999999988888888888887776444568888889998887 655
No 110
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.53 E-value=5.3e-08 Score=98.39 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|.-++|+||||||||||++.|+|.++
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 4577899999999999999999999875
No 111
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.52 E-value=8.5e-08 Score=94.28 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+++|++|+||+|||||||++++++.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 35789999999999999999999999774
No 112
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.51 E-value=3.3e-07 Score=89.10 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=26.4
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...|+|++|+||||||||||++++++.+.
T Consensus 41 l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 41 LVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 45789999999999999999999999875
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.49 E-value=4.1e-07 Score=84.02 Aligned_cols=35 Identities=34% Similarity=0.243 Sum_probs=27.2
Q ss_pred hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHh
Q 012882 28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.++.+++. ..+.+.-+.|+|+||+|||||+..|++
T Consensus 8 ~LD~~l~G---gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGG---GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTS---SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcC---CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35555531 234667899999999999999999998
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.46 E-value=9.3e-07 Score=82.88 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.0
Q ss_pred hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..++.+++. ..+.+.-+.|+||||+|||||+..|++.
T Consensus 11 ~~LD~~l~g---gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQG---GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTT---SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcC---CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 346666642 2446778999999999999999999984
No 115
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.42 E-value=8.3e-07 Score=84.30 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|+|++|+||+|+|||||+++++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999999988653
No 116
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.41 E-value=3.4e-07 Score=101.28 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=27.2
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|+.|+||+|||||||++++++.+.
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999999874
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.40 E-value=2.3e-07 Score=89.72 Aligned_cols=28 Identities=43% Similarity=0.740 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..++|++|+||+|+|||||+++++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5689999999999999999999998774
No 118
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.40 E-value=4.1e-07 Score=79.53 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=36.9
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchh
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQR 209 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r 209 (454)
+..+|++||+..++...+..|.+++... .....+|+|+|.+++++...+..+
T Consensus 76 ~~g~l~ldei~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~~~~~~~~~ 127 (145)
T 3n70_A 76 QGGTLVLSHPEHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVELAASNHII 127 (145)
T ss_dssp TTSCEEEECGGGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHHHHHHSCCC
T ss_pred CCcEEEEcChHHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHHHHHcCCCC
Confidence 3579999999988887777777766221 123477888899998876655433
No 119
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.39 E-value=1.1e-06 Score=86.09 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=26.4
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
....|+|++|+||+|+|||+|+++++..+.
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999998763
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.37 E-value=6.7e-07 Score=81.65 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=29.6
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
.++.+|++||+..++......|.+++.... .+.++|+|+|.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcC-CCCeEEEEeCC
Confidence 468899999999888777777777776532 34566666665
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.37 E-value=8.6e-08 Score=97.38 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++.-++|+||||||||||+++|.+.++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3455688999999999999999999875
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.35 E-value=6.4e-07 Score=88.31 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=41.1
Q ss_pred cCCcEEEeeCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 156 RGASILCFDEIQTVD-VFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD-~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
.++.+|++||++.+. ......|.+++..... ++++|+|+|..+ .+ ...|..+|.++.+..+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~-~~~iI~~~n~~~-~l-------------~~~l~sR~~~i~~~~~ 165 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSS-NCSIIITANNID-GI-------------IKPLQSRCRVITFGQP 165 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGG-GCEEEEEESSGG-GS-------------CTTHHHHSEEEECCCC
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCC-CcEEEEEeCCcc-cc-------------CHHHHhhCcEEEeCCC
Confidence 368999999999776 6677777777776543 456666777643 21 1235667777777554
No 123
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.33 E-value=1.3e-06 Score=83.12 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|+|++|+||||||||||++++++.+.
T Consensus 47 ~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 47 RIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999999874
No 124
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.33 E-value=1.7e-07 Score=93.04 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=26.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
...+.-++|.||||||||||+++|+|.+++
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 345677999999999999999999998753
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=5.5e-07 Score=89.75 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=38.0
Q ss_pred ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.|.++|+|.+++...|.- .-.+.+...+... ..|. ++|+||+|+||||+++++++.+.
T Consensus 14 ~~~~k~rp~~~~~~~g~~----~~~~~L~~~i~~g----~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQN----EVITTVRKFVDEG----KLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHTCCSSGGGCCSCH----HHHHHHHHHHHTT----CCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred chHHHhCCCcHHHhcCcH----HHHHHHHHHHhcC----CCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 377889998888765410 0001233333321 1233 89999999999999999998764
No 126
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.31 E-value=1.9e-06 Score=85.64 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++|++|+||+|||||+|+++++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 467999999999999999999999876
No 127
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.31 E-value=3.8e-09 Score=97.80 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=32.1
Q ss_pred hhhccCCcEEEeeCCC-C-------CCHHHHHHHHHHHHHH-HhCCc-EEEEecC
Q 012882 152 HADQRGASILCFDEIQ-T-------VDVFAIVALSGIVSRL-LSTGT-VLVATSN 196 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~-------lD~~~a~~L~~ll~~L-~~~G~-vlV~ThN 196 (454)
++++.+|.+|++|||+ . +|+.....+.+.+.+. .++|. +++++|+
T Consensus 106 ~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 106 PVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp SEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred cEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4566777888888887 6 7888888888888775 45565 5555664
No 128
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.28 E-value=3.3e-07 Score=92.53 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.+-++|+|+||||||||+++|+|.+++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 677999999999999999999998864
No 129
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.28 E-value=1.4e-07 Score=104.41 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=27.0
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+|+|++|+||+|||||+|.+++++.+.
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 346789999999999999999999999874
No 130
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.28 E-value=1.2e-07 Score=90.12 Aligned_cols=35 Identities=9% Similarity=-0.113 Sum_probs=28.9
Q ss_pred hhh-ccCCcEEEee----CCC-CCCHHHHHHHHHHHHHHHh
Q 012882 152 HAD-QRGASILCFD----EIQ-TVDVFAIVALSGIVSRLLS 186 (454)
Q Consensus 152 rAL-~~~p~lL~LD----Ep~-~lD~~~a~~L~~ll~~L~~ 186 (454)
+++ +.+|+++++| ||+ ++|......+.+.+..+.+
T Consensus 158 ~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 158 YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 345 7899999999 999 8999888888888877644
No 131
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.28 E-value=2.9e-06 Score=89.28 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...|+|++|+||||||||||++++++.+.
T Consensus 61 ~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 61 ARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999999774
No 132
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.27 E-value=5.9e-07 Score=88.75 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.|.-+.|+||||||||||+++|++.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4677999999999999999999998864
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.26 E-value=1.5e-06 Score=86.15 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+++|++|+||+|+|||+|+++++..+.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 4679999999999999999999988753
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.25 E-value=2.4e-07 Score=82.57 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.+++|+||+|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
No 135
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=6.7e-07 Score=88.68 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=37.5
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCC
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 230 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~ 230 (454)
++.||++||+..++......|.+++.+......+++ ++|.+ ..+ ...|..+|.++.+..
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il-~~~~~-~~l-------------~~~l~sR~~~i~~~~ 191 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCL-ICNYV-TRI-------------IDPLASQCSKFRFKA 191 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE-EESCG-GGS-------------CHHHHHHSEEEECCC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEE-EeCch-hhC-------------cchhhccCceEEeCC
Confidence 567999999998888877778777776543323444 44532 221 234566777775544
No 136
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.20 E-value=2.9e-06 Score=81.97 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..++|++|+||||||||||++++++.+.
T Consensus 71 ~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 71 RIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 4678999999999999999999999874
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.19 E-value=1.9e-06 Score=88.21 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=28.1
Q ss_pred hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHH--hCCC
Q 012882 27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY--GATE 68 (454)
Q Consensus 27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~--g~l~ 68 (454)
..++.+++. ..+++.-+.|+||+|||||||+..|+ +..+
T Consensus 165 ~~LD~lLgG---GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 165 KNLDTLLGG---GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp HHHHHHTTT---SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred hhHHHHhcC---CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 346666542 34567779999999999999999654 4444
No 138
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.18 E-value=1.2e-06 Score=86.19 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC-CC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA-TE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~-l~ 68 (454)
--++|+|+||+|||||+++|+|. ..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~ 44 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLY 44 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 44799999999999999999986 43
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.15 E-value=5.4e-06 Score=78.91 Aligned_cols=28 Identities=36% Similarity=0.678 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|+|++|+||+|+|||||++++++.+.
T Consensus 43 ~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999998764
No 140
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.15 E-value=2.8e-07 Score=84.75 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.-++|+||||||||||+++++|.++
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3478999999999999999999764
No 141
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.14 E-value=2.2e-06 Score=86.20 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+++|++|+||+|||||||+++++..+.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4678999999999999999999998764
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.8e-06 Score=84.36 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=36.8
Q ss_pred ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|.++|+|..++.-.|. -...+.+..++.. ..+..++|+||+|+||||+++.++..+
T Consensus 14 ~~~~k~~p~~~~~~~g~----~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQ----EHIVKRLKHYVKT-----GSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CHHHHTCCCSTTTCCSC----HHHHHHHHHHHHH-----TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred chhhccCCCCHHHhhCC----HHHHHHHHHHHHc-----CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 47788888887765441 0001223333332 122349999999999999999998765
No 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.14 E-value=7.6e-06 Score=79.45 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++++++|+||+|+|||||++++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 579999999999999999999998764
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.14 E-value=5.6e-06 Score=82.92 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=30.0
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEecCC
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLS---TGTVLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~---~G~vlV~ThN~ 197 (454)
.+|.+|+|||++.+|......|.+++..+.. .+..+|+++|.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 4588999999997788777777777766655 46644444443
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.14 E-value=1e-06 Score=81.23 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+..++|+||+|+|||||++.++..+
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 146
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.13 E-value=2.2e-06 Score=75.67 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=40.5
Q ss_pred hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+|++|+||||+ ++|+..+..+.+++..+.+.|. +|++||+.
T Consensus 76 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 76 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp HHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred HHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 3455899999999999 8999999999999999877676 99999984
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.13 E-value=6.3e-06 Score=78.83 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=34.5
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccchhc
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWDLNQ 204 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~----------~~G~vlV~ThN~~P~dLy~ 204 (454)
+..+|+|||+..+.......|.+++..-. ..++.+|+|+|.++.++..
T Consensus 100 ~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~ 157 (265)
T 2bjv_A 100 DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN 157 (265)
T ss_dssp TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence 46799999999887777777766665421 1245788888988877654
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.10 E-value=3.1e-06 Score=87.91 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=37.0
Q ss_pred eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|..+|+|.+++.-.|.- ..+.....+...+.. ....+++|+||+|+|||||+++|+..+.
T Consensus 16 la~r~rP~~l~~ivGq~-~~~~~~~~L~~~i~~-----~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQ-HLLAAGKPLPRAIEA-----GHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHTCCCSTTTCCSCH-HHHSTTSHHHHHHHH-----TCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred hHHHhCCCCHHHhCCcH-HHHhchHHHHHHHHc-----CCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44567777776654411 011111223333322 1237899999999999999999998774
No 149
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.09 E-value=3.4e-06 Score=87.53 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++|++|+||+|+|||||+++++..+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 467999999999999999999999876
No 150
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.08 E-value=6.6e-06 Score=86.42 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+|+|++|+||+|+|||+|+++++....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999988763
No 151
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=5.8e-06 Score=87.35 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++++|+||+|+||||++++++..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999876
No 152
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.07 E-value=2.2e-06 Score=76.20 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++++|+||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 56889999999999999999998754
No 153
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.06 E-value=9.8e-06 Score=81.44 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
...++-++|+||||||||||+++|+|...+
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346777999999999999999999999864
No 154
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.05 E-value=3.8e-06 Score=83.86 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..+..++|+||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999998765
No 155
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.04 E-value=4.5e-06 Score=83.98 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+++++|+||+|+|||||+++++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999998763
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.02 E-value=4.9e-06 Score=82.36 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++.+++|+||+|+|||+|++.++....
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999988764
No 157
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.00 E-value=1.3e-05 Score=82.55 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
--++|+|+||+|||||+++|+|...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3469999999999999999999764
No 158
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.98 E-value=6.2e-06 Score=85.44 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
....++-++|+||||||||||+++|+|..++
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3456777999999999999999999999864
No 159
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.98 E-value=1.2e-05 Score=81.60 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++++++|+||+|+|||+|+++++..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 578999999999999999999988663
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.97 E-value=1.3e-06 Score=85.13 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=36.3
Q ss_pred ceeecccCCccccCcccccccccchh---hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 2 DVSVRKNPENVEPGVGRWVSYLNRER---KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|.++|+|..++.-.| ++. .+.+++.. ...| .++|+||+|+||||+++.++..+
T Consensus 6 ~~~~k~~p~~~~~~~g-------~~~~~~~l~~~l~~----~~~~-~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVG-------QDEVIQRLKGYVER----KNIP-HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CTTTTTSCSSGGGSCS-------CHHHHHHHHTTTTT----TCCC-CEEEESSSSSSHHHHHHHHHHHH
T ss_pred cHHHhcCCCCHHHHhC-------CHHHHHHHHHHHhC----CCCC-eEEEECcCCcCHHHHHHHHHHHh
Confidence 3788899987776443 222 23333322 1222 39999999999999999998765
No 161
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.97 E-value=1.2e-05 Score=80.08 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.|.-+.|+||||||||||++.|++.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999875
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=3.3e-06 Score=82.40 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=38.3
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 231 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~ 231 (454)
++.++++||...+.......|.+++.... .++++|.++|. +..+ ...|..+|.++.+...
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~~~-~~~l-------------~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYS-NSTRFAFACNQ-SNKI-------------IEPLQSQCAILRYSKL 166 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTT-TTEEEEEEESC-GGGS-------------CHHHHTTSEEEECCCC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccC-CCceEEEEeCC-hhhc-------------hhHHHhhceEEeecCC
Confidence 48999999999777777666766666532 34555555554 2221 2346677887777654
No 163
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.96 E-value=3.8e-06 Score=83.76 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+..++|+||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998663
No 164
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.92 E-value=1.6e-05 Score=77.48 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=32.1
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHh----------CCcEEEEecCCCcc
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLS----------TGTVLVATSNRAPW 200 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~----------~G~vlV~ThN~~P~ 200 (454)
...+|+|||+..++......|.+++..-.- .++++|+|+|..+.
T Consensus 119 ~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 119 PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 357999999998888877777777765320 14478899998544
No 165
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.92 E-value=2.2e-05 Score=77.22 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=34.0
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccchhcCC
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWDLNQDG 206 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~----------~~G~vlV~ThN~~P~dLy~~~ 206 (454)
+..+|+|||+..+.......|.+++.... ..++.+|+|+|.++.++...|
T Consensus 96 ~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 35799999999887776666666665431 123578888888877665443
No 166
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.89 E-value=7.4e-06 Score=78.73 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++.+++|+||+|+|||+|+++++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999999999999998864
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.89 E-value=2.8e-05 Score=72.70 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=27.7
Q ss_pred cCCcEEEeeCCC-CC--CHHH-HHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 156 RGASILCFDEIQ-TV--DVFA-IVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~-~l--D~~~-a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+|+++++|+++ .. |... ...+..+.+.+.+.|+ |++++|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS 173 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 369999999999 33 5432 3445555555567788 66666654
No 168
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.88 E-value=6e-06 Score=87.83 Aligned_cols=27 Identities=30% Similarity=0.220 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+..++|+||||||||||++++++.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 577899999999999999999999875
No 169
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.88 E-value=5.7e-05 Score=84.04 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=27.1
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...++++++|+||+|||||||++++++.++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 346789999999999999999999999875
No 170
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.86 E-value=1.2e-05 Score=78.38 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..+.+++|+||+|+|||+|+++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999887755
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.84 E-value=1.3e-05 Score=80.05 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=36.9
Q ss_pred eeecccCCccccCcccccccccch---hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 3 VSVRKNPENVEPGVGRWVSYLNRE---RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|..+|+|...+.-.| ++ +.+...+.. ...+..++|+||.|+||||+++.++..+.
T Consensus 6 l~~k~rp~~~~~~vg-------~~~~~~~L~~~l~~----~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 6 LARKWRPQTFADVVG-------QEHVLTALANGLSL----GRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHTCCCSTTTSCS-------CHHHHHHHHHHHHH----TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHhhCCCchhhccC-------cHHHHHHHHHHHHh----CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567888887765433 22 223333322 12456889999999999999999987553
No 172
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.82 E-value=3.8e-05 Score=77.13 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=28.0
Q ss_pred hhhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 27 RKLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 27 ~~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++.+++ . ..+.+.-+.|+|++|+|||||+..++...
T Consensus 47 ~~LD~~Lg~G---Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 47 ISLDVALGIG---GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHHHTSSS---SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccC---CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44666665 2 23456779999999999999988887543
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.76 E-value=1.5e-05 Score=78.14 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.+++|+||+|+|||||++.++..+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 174
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.72 E-value=1.6e-05 Score=70.78 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+++.-++|+||||||||||+++|+|.++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4567799999999999999999999883
No 175
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.69 E-value=1.7e-05 Score=80.09 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
+++-++|.||||||||||+++|.+.+++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5677999999999999999999999874
No 176
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.63 E-value=1.3e-06 Score=97.34 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..++++++|+||+|||||||++++++.+.
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999998763
No 177
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.62 E-value=2.7e-05 Score=71.00 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-++|+||||||||||+++|++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999999764
No 178
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0002 Score=71.03 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..|.++||+||+|+|||++++.++..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998765
No 179
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=4e-05 Score=76.64 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++.++|+||+|+|||||++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998765
No 180
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.58 E-value=2.3e-05 Score=71.05 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|+-++|+||||||||||+++|.+.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999775
No 181
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.51 E-value=9.7e-05 Score=77.00 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.+++|+||+|+|||++++.|+..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998764
No 182
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.51 E-value=0.00013 Score=80.48 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=32.9
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccc
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWD 201 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~----------~~G~vlV~ThN~~P~d 201 (454)
..+.+|+|||+.-+.......|.++|..-. ..++++|+|+|.++.+
T Consensus 578 ~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~ 633 (758)
T 3pxi_A 578 KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE 633 (758)
T ss_dssp CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh
Confidence 356899999999777777777777776511 0235889999976654
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.49 E-value=0.00025 Score=70.57 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++++++|+||+|+|||+|++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999998664
No 184
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.48 E-value=4.3e-05 Score=71.33 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.++-++|+||||||||||+++|.|..|
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566799999999999999999999774
No 185
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.45 E-value=0.0001 Score=72.73 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.+++|+||+|+|||+|++.++..+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46899999999999999999998775
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.44 E-value=4.9e-05 Score=69.75 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+++-++|+||||||||||+++|.+..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356699999999999999999998653
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.42 E-value=0.00057 Score=66.87 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-+.++|+||+||||++..+++.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999875
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.42 E-value=0.00026 Score=70.32 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.|..++|+||.|+|||++.+.++..+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHh
Confidence 568899999999999999999987653
No 189
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.42 E-value=7.7e-05 Score=67.22 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-++|+||||||||||+++|.+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 457799999999999999999998765
No 190
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.42 E-value=0.00011 Score=77.15 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+..+.|+||+|+|||+|+++++..+.
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 357899999999999999999998764
No 191
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.41 E-value=8.4e-05 Score=66.96 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..++-++|+||||||||||+++|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999997
No 192
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.39 E-value=0.00018 Score=80.91 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=41.5
Q ss_pred hhhccC--CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG--ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~--p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|..+ |.||+||||+ +||+.+...|.++|+.|.+.|. |||++|+.
T Consensus 534 ~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 534 TQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 466677 5899999999 8999999999999999998888 99999984
No 193
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.36 E-value=9.6e-05 Score=82.86 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=41.5
Q ss_pred hhhccCCc--EEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGAS--ILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p~--lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|+.+|+ ||+||||+ +||+.+...|.++|..|.+.|. ||++|||.
T Consensus 477 raL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~ 526 (916)
T 3pih_A 477 TQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE 526 (916)
T ss_dssp HHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCH
T ss_pred HHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 57777776 99999999 8999999999999999988887 99999984
No 194
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.36 E-value=0.00075 Score=67.86 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=29.9
Q ss_pred hhhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 27 RKLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 27 ~~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++.+++ . ..+++.-+.|+||+|+|||||+..++..+
T Consensus 47 ~~LD~~Lg~G---Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 47 LAIDIATGVG---GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp HHHHHHTSSS---SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccC---CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45777765 2 33466779999999999999999998765
No 195
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.35 E-value=5.1e-05 Score=75.07 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+-+.|.|+||||||||++.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 467899999999999999999875
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.35 E-value=0.00018 Score=70.61 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-+.|+|+||+||||++..|++.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998774
No 197
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.33 E-value=0.0001 Score=67.94 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA 82 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f 82 (454)
..+.-++|+||||||||||+++|++.+++.-...+.++..++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 456789999999999999999999987521012355655444
No 198
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.29 E-value=0.00016 Score=81.12 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=41.3
Q ss_pred hhhccC--CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRG--ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~--p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|..+ |.||+||||+ +||+.+...|.++|+.|.+.|. |||++|+.
T Consensus 517 ~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 517 TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 466677 5999999999 8999999999999999998888 99999984
No 199
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.26 E-value=0.00018 Score=79.99 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=41.8
Q ss_pred hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
++|..+| .||+||||+ +||+.+...|.+++..|.+.|. |||++|+.
T Consensus 392 ~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 392 TQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5777888 599999999 8999999999999999998887 99999984
No 200
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.25 E-value=8.9e-05 Score=69.36 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=17.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHH-hCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFY-GAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~-g~l 67 (454)
..++-++|+||||||||||+++|. +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456779999999999999999999 876
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.24 E-value=0.00016 Score=80.92 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..++|+||+|+|||+++++|+..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999988763
No 202
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.21 E-value=0.0011 Score=65.38 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|+-+.|+|+||+||||++..|++.+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 4567899999999999999999999774
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.20 E-value=0.0005 Score=76.85 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.+++|+||+|+|||||++.++..+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998754
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.20 E-value=0.00022 Score=65.71 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.++-++|+||||||||||+++|.+..++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4677999999999999999999998763
No 205
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.20 E-value=0.00038 Score=62.87 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=36.6
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN 196 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN 196 (454)
..|++++||||+ +||+.....+.++|..+.+.+.+|++||+
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 457999999999 89999999999999998766668888987
No 206
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.20 E-value=0.0004 Score=69.78 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++.+++|+||+|+||||++++++..+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998774
No 207
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.20 E-value=0.00078 Score=65.99 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=30.6
Q ss_pred cccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 22 YLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
++.|++++..+.. .. . +.+.|+||.|+|||||++.+....
T Consensus 15 ~~gR~~el~~L~~-l~-~----~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 15 FFDREKEIEKLKG-LR-A----PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SCCCHHHHHHHHH-TC-S----SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHH-hc-C----CcEEEECCCCCCHHHHHHHHHHhc
Confidence 5667777666544 21 1 589999999999999999998765
No 208
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.17 E-value=0.0002 Score=65.41 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++-++|+|+||||||||+++|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999865
No 209
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.0002 Score=70.50 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.7
Q ss_pred CCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 39 APPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++++-++|+||||||||||+++|+|.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34567789999999999999999999987
No 210
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.15 E-value=0.00024 Score=64.51 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-++|+||+||||||++++|.+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 467799999999999999999999873
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.15 E-value=0.00067 Score=74.66 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..++|+||+|+|||+++++++..+.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3599999999999999999988763
No 212
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.14 E-value=0.0014 Score=67.94 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++.-+.|.|++|+|||||+..++..+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456778999999999999999998765
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.12 E-value=0.0014 Score=67.50 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=29.8
Q ss_pred cCCcEEEeeCCC--C--CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882 156 RGASILCFDEIQ--T--VDVFAIVALSGIVSRLLSTGTVLVATSN 196 (454)
Q Consensus 156 ~~p~lL~LDEp~--~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN 196 (454)
.+++++++|+|. . .|......+..+...+....+++|+.+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDAS 222 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence 579999999998 4 7777777777777766544555555544
No 214
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.12 E-value=0.00025 Score=67.03 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.+.-++|.||||||||||+++|++.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456779999999999999999999865
No 215
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.09 E-value=0.00032 Score=73.96 Aligned_cols=44 Identities=32% Similarity=0.371 Sum_probs=40.7
Q ss_pred hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
++|+.+| ++|+||||+ ++|+..+..+.++|..+.+ |. ||++||+
T Consensus 410 ~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~ 457 (517)
T 4ad8_A 410 VSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHL 457 (517)
T ss_dssp HHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred HHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 5788999 999999999 8999999999999999987 66 9999998
No 216
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.09 E-value=9.7e-05 Score=68.08 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=26.8
Q ss_pred CeE-EEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH
Q 012882 43 PKG-LYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML 84 (454)
Q Consensus 43 p~G-l~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~ 84 (454)
.+| +.+++++|.||||+.=.++-... ..+.+|.+-.|+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC
Confidence 355 88999999999999877654332 2345666665653
No 217
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.08 E-value=0.0003 Score=64.92 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+..++-++|+||+|+|||||+++|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34567899999999999999999998664
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.05 E-value=0.00025 Score=63.85 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+-++|+||||||||||+++|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 457899999999999999998843
No 219
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.05 E-value=0.0003 Score=62.90 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.-..|+||||||||||+++|++.+.+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36789999999999999999987753
No 220
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.05 E-value=0.00024 Score=62.77 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++-++|+|++||||||++++|++.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999774
No 221
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.04 E-value=0.00036 Score=68.56 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+.-++|.||||||||||+++|.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567799999999999999999999764
No 222
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00038 Score=63.58 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+.-++|+|++|||||||+++|++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999774
No 223
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.01 E-value=0.00028 Score=70.01 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++..++|+||||+|||||++++++.+.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 457799999999999999999999763
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.98 E-value=0.00073 Score=74.48 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.++.|+||+|+|||++++.++..+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998764
No 225
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.97 E-value=0.0003 Score=63.95 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=24.6
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
++++|++||.|.++.. +.+.+..+.+.|. |+++.++
T Consensus 76 ~~dvviIDE~Q~~~~~----~~~~l~~l~~~~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS----LFEVVKDLLDRGIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCTT----HHHHHHHHHHTTCEEEEEEES
T ss_pred CCCEEEEECcccCCHH----HHHHHHHHHHCCCCEEEEeec
Confidence 5789999999966543 3345566666688 6665654
No 226
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.96 E-value=0.00049 Score=61.06 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++-++|+|++||||||++++|++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46779999999999999999998864
No 227
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.95 E-value=0.00037 Score=65.27 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
...+.-+.|.|++|||||||+++|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345667999999999999999999986
No 228
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.93 E-value=0.00034 Score=73.11 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
+. .-++|+||||||||||+++|+|.+++
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 44 78999999999999999999998764
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.92 E-value=0.00048 Score=72.58 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.+.+++|.||||||||||++++.+.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 5678999999999999999999999974
No 230
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.91 E-value=0.00064 Score=68.51 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=38.2
Q ss_pred hhccC-CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882 153 ADQRG-ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR 197 (454)
Q Consensus 153 AL~~~-p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~ 197 (454)
++..+ |++|+||||+ ++|+..+..+.++|..+...+.|+++||+.
T Consensus 300 ~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~ 346 (371)
T 3auy_A 300 ALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHR 346 (371)
T ss_dssp HHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCG
T ss_pred HHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChH
Confidence 44678 9999999999 899999999999998875444599999983
No 231
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.88 E-value=0.003 Score=67.79 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.+..++|+||+|||||||+++|++.+++
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4578999999999999999999998864
No 232
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.87 E-value=0.0035 Score=61.19 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.2
Q ss_pred cccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 22 YLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
++.|++++..+.... ..++.+.|+|+.|+|||||++.+....
T Consensus 14 ~~gR~~el~~L~~~l----~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 14 IFDREEESRKLEESL----ENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SCSCHHHHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHH----hcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 556665554432210 013689999999999999999998754
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.81 E-value=0.0022 Score=76.92 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=29.1
Q ss_pred hhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 28 KLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 28 ~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++.+++ . ..+.++++.|+||+|+|||||+..+....
T Consensus 1414 ~LD~lLG~G---Gi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1414 SLDIALGAG---GLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp HHHHHHSSS---SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCC---CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3666655 2 34578999999999999999999987644
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.80 E-value=0.0031 Score=62.43 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+..+.|+||+|+|||||+..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4556789999999999999998753
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.79 E-value=0.0014 Score=72.21 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.+++|+||+|+||||+++.++..+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 56889999999999999999998754
No 236
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.77 E-value=0.00068 Score=68.18 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCeEEEE--EcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYL--YGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L--~GpnGsGKTTLm~ll~g~l 67 (454)
.+..++| +||.|+|||||++.++..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4678999 9999999999999998765
No 237
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.75 E-value=0.0023 Score=70.74 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+-+.+.||+||||||++.++...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999988888653
No 238
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.74 E-value=0.00064 Score=69.92 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCCeE--EEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKG--LYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~G--l~L~GpnGsGKTTLm~ll~g~l 67 (454)
..+.- ++|+|+||||||||+++|+|..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34555 8999999999999999999974
No 239
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.74 E-value=0.00056 Score=64.29 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
+++++++||.+.++.. +.+.+..+.+.|+ |+++.++.
T Consensus 89 ~~dvViIDEaQ~l~~~----~ve~l~~L~~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDR----ICEVANILAENGFVVIISGLDK 126 (223)
T ss_dssp TCCEEEECSGGGSCTH----HHHHHHHHHHTTCEEEEECCSB
T ss_pred CCCEEEEecCccCcHH----HHHHHHHHHhCCCeEEEEeccc
Confidence 5899999999976643 3345566666788 77776653
No 240
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.71 E-value=0.00093 Score=58.50 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHh
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
+.-..|+||||+||||++++|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999864
No 241
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.71 E-value=0.0056 Score=64.35 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
..+++.|++||||||+++.+..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999865
No 242
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.68 E-value=0.001 Score=68.34 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.-++|.||||||||||++++.+.+++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 44789999999999999999998864
No 243
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.67 E-value=0.00043 Score=65.83 Aligned_cols=27 Identities=41% Similarity=0.692 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..|+|++|+||+|+|||||++++++.+
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999999999999998855
No 244
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.66 E-value=0.0034 Score=77.50 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA 82 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f 82 (454)
.++++.|+||+|||||++++.+....++ ..-..++|...
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~infsa~ 1304 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSL--YDVVGINFSKD 1304 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEECCTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEEeecC
Confidence 3689999999999999999555444432 12345666543
No 245
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.65 E-value=0.00094 Score=65.36 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
++-++|+||||||||||+++|.|...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 567899999999999999999998864
No 246
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.65 E-value=0.00026 Score=66.80 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
-++|+||||||||||+++|+|.+++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 3578999999999999999998864
No 247
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.61 E-value=0.0019 Score=59.41 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=26.8
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNR 197 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~ 197 (454)
.+.++|++||.|-+ . + +.++++.|.+.|+ ||++..+.
T Consensus 90 ~~~DvIlIDEaQFf-k-~---~ve~~~~L~~~gk~VI~~GL~~ 127 (195)
T 1w4r_A 90 LGVAVIGIDEGQFF-P-D---IVEFCEAMANAGKTVIVAALDG 127 (195)
T ss_dssp HTCSEEEESSGGGC-T-T---HHHHHHHHHHTTCEEEEEEESB
T ss_pred cCCCEEEEEchhhh-H-H---HHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999966 2 2 4456688888898 66666553
No 248
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.60 E-value=0.0013 Score=60.21 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+.-++|.|++|||||||+++|.+.++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999998764
No 249
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.59 E-value=0.0012 Score=66.86 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+.+++++|+||+|||||||++++++...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45678999999999999999999998653
No 250
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.58 E-value=0.0068 Score=60.84 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=27.8
Q ss_pred hhhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 27 RKLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 27 ~~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++.+++ . ..+.+.-+.|+|++|+|||||+..++...
T Consensus 49 ~~LD~~Lg~G---Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIALGAG---GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHHTSSS---SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccC---CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34666654 1 23466789999999999999998877543
No 251
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0012 Score=69.06 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...+.-++|+|+||||||||+++|+|.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 34577899999999999999999999875
No 252
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.56 E-value=0.0016 Score=59.46 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+.-++|.|++||||||++++|.+.++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567799999999999999999999763
No 253
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.56 E-value=0.0014 Score=64.95 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|.-++|.||||||||||+++|.+.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577899999999999999999998764
No 254
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.55 E-value=0.0013 Score=60.03 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.-++|.|++||||||+.++|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999988
No 255
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.53 E-value=0.0013 Score=60.79 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-++|.|++||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999998865
No 256
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.52 E-value=0.0014 Score=62.25 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+.-++|.||+||||||++++|+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999943
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.52 E-value=0.0014 Score=59.67 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++.++|+|++||||||+.+.|++.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998865
No 258
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.51 E-value=0.011 Score=58.81 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.0
Q ss_pred hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.++.+++. ..+.+.-+.|+|++|+|||||+..++..
T Consensus 110 ~LD~~LgG---Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGG---GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTS---SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35555542 3345667899999999999999988874
No 259
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.50 E-value=0.0014 Score=65.86 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-++|+|+||+|||||+++|.|...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 356799999999999999999999875
No 260
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.50 E-value=0.0012 Score=59.56 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
--+.|+|+||+|||||++.|.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4589999999999999999998653
No 261
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.49 E-value=0.0012 Score=59.62 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|++|+|||||++.|.|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999999864
No 262
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.49 E-value=0.0012 Score=65.70 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF 79 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f 79 (454)
..+.-++|+|+||||||||+++|.|.+.+ ..++..+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEE
Confidence 45677999999999999999999997752 234444443
No 263
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.46 E-value=0.0013 Score=59.86 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-++|.|++||||||++++|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 488999999999999999998 5
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.43 E-value=0.0011 Score=62.44 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=30.2
Q ss_pred cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882 156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP 199 (454)
Q Consensus 156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P 199 (454)
..|+++++||+.. .+......+++.+..+...|.-+++|.|.-.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh 128 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQH 128 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccc
Confidence 4699999999983 4433344556666667888886667777543
No 265
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.42 E-value=0.0028 Score=65.02 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=36.8
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
.+|++|+||||+ +||+..+..+.++|..+...|. +||+||+
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 589999999999 8999999999999999876566 8888887
No 266
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.001 Score=59.85 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.+.|+|++|||||||+++|.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999999999999875
No 267
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.40 E-value=0.0022 Score=62.84 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.++-++|+||||+|||||+++|. ..++
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 35779999999999999999999 7753
No 268
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.0088 Score=55.81 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHH
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFY 64 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~ 64 (454)
++-+.+.||+||||||++.++.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5779999999999999887764
No 269
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.36 E-value=0.0019 Score=66.32 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATEG 69 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~ 69 (454)
.+.-.+|+||||||||||+++|++.+.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3567899999999999999999998754
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.34 E-value=0.0017 Score=59.29 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-++|.||+|||||||++.|...++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 567799999999999999999988764
No 271
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.30 E-value=0.0023 Score=58.89 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-..|+||||+||||++++|.-.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4557899999999999999986443
No 272
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.29 E-value=0.0012 Score=59.86 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..+.-++|+|+||+|||||++.|.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999998865
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.27 E-value=0.0022 Score=56.72 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|+-++|.|++||||||+.+.|...++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999998774
No 274
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.27 E-value=0.0018 Score=58.91 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
++-++|.|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998765
No 275
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.23 E-value=0.0025 Score=59.46 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=36.9
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhcccccc
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPI 228 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l 228 (454)
.+.+++++||.|-++.. +...+..+.+.|+ |+++.-+. .++++.|-+...+|.---.|..+
T Consensus 100 ~~~dvV~IDEaQFf~~~----~v~~l~~la~~gi~Vi~~GLd~--------DF~~~~F~~~~~Ll~~Ad~v~kl 161 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDE----IVSIVEKLSADGHRVIVAGLDM--------DFRGEPFEPMPKLMAVSEQVTKL 161 (219)
T ss_dssp TTCSEEEECCGGGSCTH----HHHHHHHHHHTTCEEEEEEESB--------CTTSCBCTTHHHHHHHCSEEEEE
T ss_pred cCCCEEEEechhcCCHH----HHHHHHHHHHCCCEEEEeeccc--------ccccCCCccHHHHHHhcceEEEe
Confidence 46899999999976653 3344555556788 77766543 23345566555555433333333
No 276
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.19 E-value=0.003 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.-+.|.|++||||||++++|.+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999999866
No 277
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.17 E-value=0.0098 Score=58.57 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=27.3
Q ss_pred hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++.+++. ..+.+.-+.|+|++|+|||||+..++...
T Consensus 95 ~LD~~L~G---Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAG---GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTT---SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCC---CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 35555532 23456779999999999999999887643
No 278
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.16 E-value=0.013 Score=59.04 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=26.8
Q ss_pred hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..++.+++. -..+.+..+.|+|++|+|||||+-.++..
T Consensus 60 ~~LD~~Lg~--GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 60 LSLDLALGV--GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp HHHHHHTSS--SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCC--CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 346666541 02345677999999999999998777653
No 279
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.16 E-value=0.0011 Score=65.26 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++-++|+|+||+|||||+++|.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 467899999999999999999999775
No 280
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.12 E-value=0.0029 Score=63.60 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 012882 45 GLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g 65 (454)
-.+|+||||+|||||+++|++
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 578999999999999999987
No 281
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0045 Score=55.40 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+.-+.|.|++||||||+++.|+..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.05 E-value=0.0029 Score=55.30 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.|.|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 283
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.02 E-value=0.0031 Score=60.68 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.|.+++|+||+|+|||+++++++..+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999988664
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.00 E-value=0.0044 Score=55.62 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
+.++-++|+|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999886
No 285
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.98 E-value=0.058 Score=55.60 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.|.-+.+.|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999987553
No 286
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.98 E-value=0.0047 Score=65.96 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+-+.|.|++|+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998755
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.96 E-value=0.0042 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHh
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
|+-+.|.|++||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 46789999999999999999987
No 288
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.92 E-value=0.0049 Score=60.06 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|.-++|.|++|||||||+++|.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4577899999999999999999998774
No 289
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.90 E-value=0.0064 Score=55.55 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=25.3
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
+.+++++||.+.+|... ...++.+...|+ |+++..+
T Consensus 81 ~~dvViIDEaqfl~~~~----v~~l~~l~~~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEI----VEIVNKIAESGRRVICAGLD 117 (191)
T ss_dssp TCSEEEECSGGGSCTHH----HHHHHHHHHTTCEEEEEECS
T ss_pred cCCEEEEECCCCCCHHH----HHHHHHHHhCCCEEEEEecc
Confidence 47999999999776543 345666666788 6666554
No 290
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.014 Score=57.29 Aligned_cols=23 Identities=9% Similarity=-0.156 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHh
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
+..+.|+||+|+||||+..+|+.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999975
No 291
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.87 E-value=0.0047 Score=63.83 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+|+|+.|+||+|+|||||.++++..+.
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4679999999999999999999998764
No 292
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.87 E-value=0.0047 Score=62.08 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=32.5
Q ss_pred cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEec
Q 012882 156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATS 195 (454)
Q Consensus 156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~Th 195 (454)
.+|+||+||||+ +||+..+..|.+++..+. .++|++||
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th 329 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE 329 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe
Confidence 799999999999 899999999999998874 24666666
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.86 E-value=0.0055 Score=54.71 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|+-+.|.|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 294
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.86 E-value=0.0041 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.-+.|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999853
No 295
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.83 E-value=0.0048 Score=54.91 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
++.++|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998755
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.82 E-value=0.0042 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.-+.|.|++||||||+.+.| ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 35789999999999999999 443
No 297
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.82 E-value=0.0045 Score=58.70 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...|.-+.|.|++||||||+.+.|...+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45678899999999999999999988764
No 298
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.80 E-value=0.0047 Score=54.99 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-+.|.|++||||||+.+.|+..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998644
No 299
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.75 E-value=0.0044 Score=61.82 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++.++.|+||+|+|||++.++++..+.
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999999998774
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.74 E-value=0.0048 Score=56.21 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHhCCC
Q 012882 46 LYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.|.||+|+|||||++.|....|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999976543
No 301
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.69 E-value=0.0068 Score=55.57 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..++-+.|.|++||||||+++.|.+.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998764
No 302
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.68 E-value=0.0078 Score=56.05 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=36.7
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccC
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIG 229 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~ 229 (454)
+.+++++||.|.+|... + +++..+...|+ |+++..+.. ++++.|-+.-.+|.---.|.++.
T Consensus 101 ~~dvViIDEaQF~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~D--------F~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDI---V-EVVQVLANRGYRVIVAGLDQD--------FRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGGSCTTH---H-HHHHHHHHTTCEEEEEECSBC--------TTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECcccCCHHH---H-HHHHHHhhCCCEEEEEecccc--------cccCccccHHHHHHhcccEEeee
Confidence 47999999999766432 2 55666666788 666665432 34445655555544333444443
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.68 E-value=0.0063 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++.++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35669999999999999999998654
No 304
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.67 E-value=0.012 Score=70.65 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+.+..+.|+||+|||||||+..|.-.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999999999998643
No 305
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.65 E-value=0.0051 Score=58.65 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++-++|+|++||||||+.++|++.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56799999999999999999998653
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.64 E-value=0.0056 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.|.|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998765
No 307
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.62 E-value=0.0072 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
+.-+.|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999984
No 308
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.61 E-value=0.0046 Score=65.65 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+.-++|+|+||||||||+++|++.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 456799999999999999999999875
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.57 E-value=0.0061 Score=54.80 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhCCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
-++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999988653
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.54 E-value=0.0074 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-+.|.|++||||||+.+.|...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998755
No 311
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.54 E-value=0.0057 Score=54.40 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
-+.|+|++|+|||||++.|.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
No 312
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.54 E-value=0.032 Score=56.38 Aligned_cols=54 Identities=24% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHH-h---------CCcEEEEecCCCccchhcCCchhh
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLL-S---------TGTVLVATSNRAPWDLNQDGMQRE 210 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~-~---------~G~vlV~ThN~~P~dLy~~~l~r~ 210 (454)
+--.|+|||+.-++...+..|.++|..-. . -.+.+|+|+|+.+.++...|..|+
T Consensus 231 ~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~ 294 (387)
T 1ny5_A 231 DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFRE 294 (387)
T ss_dssp TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccH
Confidence 35699999999899888888888777521 0 134588888998888776665443
No 313
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.53 E-value=0.0063 Score=56.40 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...++.++||+|+||||+..+++..+.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988764
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.52 E-value=0.0072 Score=58.63 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...|.-+.|.||+||||||+.+.|...++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578899999999999999999987663
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.51 E-value=0.0084 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..+.-++|.|++||||||+.+.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999875
No 316
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.50 E-value=0.0078 Score=53.06 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-+.|+|++|+|||||++.|.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999999853
No 317
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.47 E-value=0.0061 Score=62.96 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+|+|+.|+||+||||||+.+++++.+.
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999999875
No 318
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.46 E-value=0.0085 Score=55.95 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..+.-++|.|++||||||+.++|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998754
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.46 E-value=0.0085 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
|.-+.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5779999999999999999997654
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.42 E-value=0.0053 Score=54.39 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=19.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.|.-+.|.|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999999999987653
No 321
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.39 E-value=0.0082 Score=61.01 Aligned_cols=39 Identities=5% Similarity=-0.076 Sum_probs=28.9
Q ss_pred CC--cEEEeeCCC-CCCHHHHHHHHHHHHHH-HhCCcEEEEecC
Q 012882 157 GA--SILCFDEIQ-TVDVFAIVALSGIVSRL-LSTGTVLVATSN 196 (454)
Q Consensus 157 ~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L-~~~G~vlV~ThN 196 (454)
+| +++++||+. +.|+......+..+..+ ...|..++ +|+
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~-sh~ 181 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE-MKA 181 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS-HHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc-ccc
Confidence 67 899999998 78888888888888777 55554332 664
No 322
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.34 E-value=0.011 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.014 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
++-+.|.|+.||||||+.+.|...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.32 E-value=0.0099 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.-++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998755
No 324
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.30 E-value=0.0093 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhCCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
-+.|.||+|||||||.+.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 578999999999999999987653
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.30 E-value=0.013 Score=52.95 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..++-+.|.|++||||||+.+.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346779999999999999999998765
No 326
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.27 E-value=0.012 Score=53.19 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..|.-+.|.|++||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346679999999999999999998754
No 327
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.25 E-value=0.0087 Score=53.17 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhCCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
-+.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987653
No 328
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=59.06 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+.-+.|+|++|+|||||++.|.+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 356699999999999999999998653
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.23 E-value=0.012 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
++-++|.|++||||||+.+.|...+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999988664
No 330
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.21 E-value=0.018 Score=59.50 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.|.|+.|+||||++..+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899999999999999988765
No 331
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.20 E-value=0.011 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHh
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
|.-++|.|++||||||+.++|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 332
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.16 E-value=0.01 Score=58.03 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCCeE-EEEEcCCCChHHHHHHHHHhC
Q 012882 41 PAPKG-LYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 41 ~~p~G-l~L~GpnGsGKTTLm~ll~g~ 66 (454)
++|.| +.|+|.+|+|||||++.|.|.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 44555 889999999999999999985
No 333
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.16 E-value=0.011 Score=59.47 Aligned_cols=43 Identities=2% Similarity=0.037 Sum_probs=27.0
Q ss_pred Hhc-CCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecC
Q 012882 319 AHN-YHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS 364 (454)
Q Consensus 319 a~~-f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~ 364 (454)
+.. -.+++++++- +.-+...+..+..+|..+-+. ..+++++..
T Consensus 302 ~~~~~~~lllDEp~--~~LD~~~~~~l~~~l~~~~~~-~~vi~~th~ 345 (371)
T 3auy_A 302 IGNRVECIILDEPT--VYLDENRRAKLAEIFRKVKSI-PQMIIITHH 345 (371)
T ss_dssp HSSCCSEEEEESTT--TTCCHHHHHHHHHHHHHCCSC-SEEEEEESC
T ss_pred hcCCCCeEEEeCCC--CcCCHHHHHHHHHHHHHhccC-CeEEEEECh
Confidence 446 7888888753 334566677788888776333 356666644
No 334
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.16 E-value=0.012 Score=56.56 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...++.|+||+|+|||+|+++|+..++
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 356899999999999999999998654
No 335
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.15 E-value=0.014 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|+-++|.|+.||||||+.+.|...+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999998654
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.14 E-value=0.012 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++-+.|.|++||||||+.+.|...+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998754
No 337
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.13 E-value=0.098 Score=64.83 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
...|..+.||.|+|||++.+.++..+.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg 670 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLG 670 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhC
Confidence 458999999999999999999999884
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.11 E-value=0.012 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-++|.|++||||||+.+.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998755
No 339
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.07 E-value=0.025 Score=67.14 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++..+.|+|++|+|||||+..++..+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 4577889999999999999999987755
No 340
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.04 E-value=0.013 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+-+.|.|++|+|||||++.+.+.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999998865
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.04 E-value=0.016 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..|+-+.|+||+||||||..+.|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998754
No 342
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.02 E-value=0.11 Score=53.36 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=22.8
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+++.-+.|.|++|+|||||+.-++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456678899999999999998887654
No 343
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.01 E-value=0.017 Score=54.09 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+.-+.|.|++||||||+++.|...+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999998775
No 344
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.00 E-value=0.021 Score=67.67 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=53.2
Q ss_pred CCEEEEechh-----------------hhCCCCChhHHHHHHh------cCCEEEEcCCCCCCcCC-ch----------h
Q 012882 295 NGVARFTFEY-----------------LCGRPVGAADYIAVAH------NYHTVFITNIPVMSMRI-RD----------K 340 (454)
Q Consensus 295 ~~va~f~F~e-----------------LC~~~lg~aDYl~la~------~f~ti~i~~VP~l~~~~-~~----------~ 340 (454)
+.+|+++|++ ||.+|-..-+-|+++. ..+.|+|+-|.-|.... -+ +
T Consensus 1460 ~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ 1539 (1706)
T 3cmw_A 1460 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 1539 (1706)
T ss_dssp CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHH
T ss_pred CeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHH
Confidence 4588999974 4557766666676665 57899999998887642 23 6
Q ss_pred hhhh----hhhHhhhhhcCceEEEEecCC--hhhhccC
Q 012882 341 ARRF----ITLIDELYNHHCCLFCSAASS--IDDLFQG 372 (454)
Q Consensus 341 arRF----i~lID~lYe~~~kl~~~a~~~--~~~lf~~ 372 (454)
||.+ .-|.+.+-.++|-+++..+.. +--.|..
T Consensus 1540 ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 1577 (1706)
T 3cmw_A 1540 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 1577 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECBC--------C
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccccccceecCC
Confidence 6665 667899999999999888753 3344543
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.98 E-value=0.012 Score=54.32 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|.-+.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998765
No 346
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.97 E-value=0.012 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHhCC
Q 012882 46 LYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g~l 67 (454)
++|.|++||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997654
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.96 E-value=0.015 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|.-+.|.|+.||||||+.+.|...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999998754
No 348
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.94 E-value=0.0047 Score=60.62 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
+.+++|+||+|+|||+|++.++..++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 45699999999999999999998764
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.94 E-value=0.013 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+-++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998755
No 350
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.94 E-value=0.014 Score=54.99 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|.-+.|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998755
No 351
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.93 E-value=0.012 Score=57.47 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
-+.|+|++|+|||||++.|.|.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999985
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.87 E-value=0.013 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHhCC
Q 012882 46 LYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.|.|+.||||||+.+.|...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998765
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.86 E-value=0.016 Score=53.21 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.-+.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999998755
No 354
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.86 E-value=0.0092 Score=61.15 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.-++|+|+||||||||+++|++..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Confidence 348999999999999999999874
No 355
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.85 E-value=0.013 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHhCC
Q 012882 46 LYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g~l 67 (454)
++|.|++||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997755
No 356
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.84 E-value=0.016 Score=50.77 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998754
No 357
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.83 E-value=0.014 Score=54.42 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+.-+.|+|++|+|||||++.|.|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 345699999999999999999998653
No 358
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.82 E-value=0.015 Score=53.73 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.-+.|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35779999999999999999998765
No 359
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.80 E-value=0.013 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.-+.|+|++|+|||||++.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999864
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.73 E-value=0.0075 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhCCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
-+.|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999987663
No 361
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.72 E-value=0.019 Score=54.00 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|.-+.|.|++||||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999997654
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.72 E-value=0.022 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
..|.-++|.|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467799999999999999999984
No 363
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.71 E-value=0.016 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998754
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.70 E-value=0.014 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
...-+.|+|++|+|||||++.|.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999875
No 365
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.68 E-value=0.032 Score=52.49 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=25.8
Q ss_pred cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882 156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN 196 (454)
Q Consensus 156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN 196 (454)
.+.+++++||.|.+.. +.++++.+.+.|+ |+++..+
T Consensus 89 ~~~dvViIDEaQF~~~-----v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD-----IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT-----HHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh-----HHHHHHHHHhCCCEEEEEecc
Confidence 4689999999994431 5666666666888 6666665
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.68 E-value=0.016 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998754
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.67 E-value=0.017 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 368
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.61 E-value=0.018 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999874
No 369
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.57 E-value=0.018 Score=49.86 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|++|+|||||++.|.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468999999999999999998743
No 370
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.57 E-value=0.034 Score=51.41 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=24.6
Q ss_pred hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHH
Q 012882 28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY 64 (454)
Q Consensus 28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~ 64 (454)
.++++++. ..+++.-+.|.|++|+|||+|+--++
T Consensus 18 ~LD~~l~G---Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 18 GFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcC---CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 46666532 33456778999999999999976543
No 371
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.54 E-value=0.018 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998753
No 372
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.52 E-value=0.019 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 373
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.52 E-value=0.022 Score=56.13 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..|+-+.++|+||+||||++..|++.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999775
No 374
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.02 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 375
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.51 E-value=0.018 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999998865
No 376
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.025 Score=50.18 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
...-+.++|+.|+|||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998864
No 377
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.46 E-value=0.02 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 378
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.46 E-value=0.023 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 379
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.46 E-value=0.19 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.|+.+.++|++|+||||++..|++.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999775
No 380
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.40 E-value=0.021 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.++|+.|+|||||++.|.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998754
No 381
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.39 E-value=0.03 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+.-+.|+|+.|+|||||++.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 382
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.37 E-value=0.1 Score=51.80 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=27.0
Q ss_pred hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.|+.+++ ...++.-+.|.|++|+|||||+.-++...
T Consensus 35 ~LD~~~g----Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 35 QLDNYTS----GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHC----SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhc----CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3555554 33456778899999999999998887654
No 383
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.36 E-value=0.017 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.|+|++|+|||||++.|.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999997643
No 384
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.35 E-value=0.022 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.++|+.|+|||||++.|.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998643
No 385
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.33 E-value=0.026 Score=50.55 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+-+.|.|++|||||||+..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999998765
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.33 E-value=0.022 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.++|+.|+|||||++.+.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998743
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.33 E-value=0.022 Score=48.76 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 388
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.32 E-value=0.026 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-+.|.|++||||||+.+.|...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998753
No 389
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.31 E-value=0.023 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 390
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.29 E-value=0.022 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.++|+.|+|||||++.|.+.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458899999999999999998743
No 391
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.28 E-value=0.028 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..-+.++|+.|+|||||++.|.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 392
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.26 E-value=0.14 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
...+-..+.|+.||||||++.-++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3457788999999999999987754
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.25 E-value=0.024 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.--+.++|+.|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998743
No 394
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.23 E-value=0.024 Score=48.90 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
-+.++|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999764
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.22 E-value=0.029 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.-+.|.|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998765
No 396
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.22 E-value=0.034 Score=48.96 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..-+.|+|+.|+|||||++.|.+.-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3568999999999999999998753
No 397
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.19 E-value=0.027 Score=50.71 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.++|+.|.|++|+|||||+-.|..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999998865
No 398
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.18 E-value=0.03 Score=49.58 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
...-+.|+|+.|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999875
No 399
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.18 E-value=0.027 Score=53.12 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.+.-++|.|++||||||+.+.|...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467799999999999999999987553
No 400
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.17 E-value=0.025 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 401
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.15 E-value=0.13 Score=50.77 Aligned_cols=37 Identities=16% Similarity=-0.057 Sum_probs=22.9
Q ss_pred hhhhhhccCCCC-CCCCCeEEEEEcCCCChHHHHHHHHH
Q 012882 27 RKLDSLVGRCPT-APPAPKGLYLYGNVGSGKTMLMDMFY 64 (454)
Q Consensus 27 ~~~~~~~~~~~~-~~~~p~Gl~L~GpnGsGKTTLm~ll~ 64 (454)
..|+.+++-... ..+++ -+.|+||+|+|||||+--++
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 457777651100 22233 36788999999999955443
No 402
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.15 E-value=0.027 Score=55.82 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
..+.-++|+|++|+|||||++.|++.+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567799999999999999999988653
No 403
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.12 E-value=0.027 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
...++|+|++||||||+.++|++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3569999999999999999998865
No 404
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.12 E-value=0.023 Score=58.36 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-++|+|++|+|||||++.|.|..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999999864
No 405
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.028 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.--+.|+|+.|+|||||++.|.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998743
No 406
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.11 E-value=0.022 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.++|++|+|||||++.|.+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 407
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.10 E-value=0.025 Score=51.47 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..-++|.|+.||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 466999999999999999999875
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.10 E-value=0.025 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997754
No 409
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.06 E-value=0.027 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.|+|+.|+|||||++.|.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.03 E-value=0.028 Score=49.70 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
+--+.++|+.|+|||||++.|.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.03 E-value=0.025 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHhCC
Q 012882 46 LYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.|.|++||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998754
No 412
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.01 E-value=0.026 Score=54.28 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.-+.|+|++|+|||||++.|.|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999985
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.00 E-value=0.031 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
|+-+.|.|++||||||+.+.|....
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC
Confidence 4668999999999999999998743
No 414
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.98 E-value=0.028 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|++|+|||||++.|.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 415
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.98 E-value=0.029 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.++|+.|+|||||++.|.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998743
No 416
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.96 E-value=0.03 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.++|+.|+|||||++.|.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345899999999999999999864
No 417
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.94 E-value=0.03 Score=47.98 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHh
Q 012882 46 LYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g 65 (454)
+.++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
No 418
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.93 E-value=0.026 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhCC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
-+.++|++|+|||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998753
No 419
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.91 E-value=0.031 Score=51.51 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.++++.|.||+|+|||||...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999997654
No 420
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.91 E-value=0.025 Score=56.86 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+-+.|+|++|+|||||++.|.+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 458899999999999999999864
No 421
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.89 E-value=0.023 Score=56.97 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|++|+|||||++.|++..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCC
Confidence 447999999999999999998753
No 422
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.88 E-value=0.028 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
+.-+.++|++|+|||||++.+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999873
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.87 E-value=0.031 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.467 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.++|+.|+|||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 569999999999999999998743
No 424
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.87 E-value=0.029 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 425
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.86 E-value=0.021 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.-+.|+|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999976
No 426
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.82 E-value=0.035 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
--+.|+|+.|+|||||++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4589999999999999999988664
No 427
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.80 E-value=0.042 Score=47.28 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+--+.++|+.|+|||||++.|.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3466999999999999999999763
No 428
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.79 E-value=0.032 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.|+|+.|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356999999999999999999864
No 429
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.76 E-value=0.033 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 430
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.76 E-value=0.015 Score=61.05 Aligned_cols=45 Identities=7% Similarity=-0.035 Sum_probs=29.5
Q ss_pred HHHhcC--CEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecC
Q 012882 317 AVAHNY--HTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS 364 (454)
Q Consensus 317 ~la~~f--~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~ 364 (454)
+|+..- .+++++. |.-++ +...+.++..+|..+-+ ++.++|.+..
T Consensus 411 ~l~~~~~~~~lilDE-p~~gl-d~~~~~~i~~~l~~~~~-~~~vi~itH~ 457 (517)
T 4ad8_A 411 STVLGADTPSVVFDE-VDAGI-GGAAAIAVAEQLSRLAD-TRQVLVVTHL 457 (517)
T ss_dssp HHHHCCCSSEEEECS-CSSSC-CTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred HHHhCCCCCEEEEeC-CcCCC-CHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 455566 7777764 44344 45677888999988877 5666665544
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.75 E-value=0.039 Score=54.57 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
.++.+.|+||+|||||||...|+..+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998764
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.75 E-value=0.036 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.-+.|.|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998755
No 433
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.74 E-value=0.032 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.--+.|+|+.|+|||||++.|.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998643
No 434
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.70 E-value=0.03 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+.-|.|+|+.|+|||||++.|.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999874
No 435
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.69 E-value=0.035 Score=48.38 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.64 E-value=0.027 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.+--+.++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 457799999999999999999874
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.63 E-value=0.034 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHhCC
Q 012882 46 LYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 46 l~L~GpnGsGKTTLm~ll~g~l 67 (454)
+.|+||+||||+|..+.|+...
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998754
No 438
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.62 E-value=0.044 Score=49.66 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
...-+.|+|++|+|||||++.|.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998854
No 439
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.62 E-value=0.085 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+-+.+.|++|+||||++..+...
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999998876543
No 440
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.61 E-value=0.034 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.++|++|+|||||++.|.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 441
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.61 E-value=0.036 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 442
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.59 E-value=0.036 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.|+|+.|+|||||++.|.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.53 E-value=0.038 Score=49.44 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.--+.|+|+.|+|||||++.|.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998753
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.53 E-value=0.038 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|++|+|||||++.|.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 445
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.037 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998743
No 446
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.48 E-value=0.36 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.++.+.|+|+.|.|||||+..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468899999999999999999995
No 447
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.48 E-value=0.055 Score=49.74 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
...-+.|+|+.|+|||||++.|.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 448
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.48 E-value=0.039 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|++|+|||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999877653
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.43 E-value=0.04 Score=48.75 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 450
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.04 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.|+|+.|+|||||++.|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456999999999999999999874
No 451
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.37 E-value=0.042 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 452
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.36 E-value=0.052 Score=47.49 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.|+|+.|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999874
No 453
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.35 E-value=0.042 Score=49.26 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
--+.|+|++|+|||||++.|.+
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999986
No 454
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.34 E-value=0.043 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|+.|+|||||++.|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999863
No 455
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.33 E-value=0.041 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
+--|.|+|.+|+|||||++.|.|.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4569999999999999999999864
No 456
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.31 E-value=0.039 Score=48.52 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..--+.++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998643
No 457
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.30 E-value=0.044 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.--+.++|+.|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998643
No 458
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.27 E-value=0.044 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|+.|+|||||++.|.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 34899999999999999999864
No 459
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.042 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 458999999999999999998744
No 460
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.24 E-value=0.045 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
-+.|+|.+|+|||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999985
No 461
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.23 E-value=0.045 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 348999999999999999998743
No 462
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.22 E-value=0.043 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.--+.|+|+.|+|||||++.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3558999999999999999998754
No 463
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.22 E-value=0.044 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.-+.|+|.+|+|||||++.|.|.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999999884
No 464
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.18 E-value=0.061 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.-+.++|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998854
No 465
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.18 E-value=0.038 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|+.|+|||||++.|.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999764
No 466
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.16 E-value=0.045 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.-+.|+|+.|+|||||++.|.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4589999999999999999985
No 467
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.15 E-value=0.085 Score=52.87 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=39.1
Q ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhC----------CcEEEEecCCCccchhcCCchhh
Q 012882 157 GASILCFDEIQTVDVFAIVALSGIVSRLLST----------GTVLVATSNRAPWDLNQDGMQRE 210 (454)
Q Consensus 157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~----------G~vlV~ThN~~P~dLy~~~l~r~ 210 (454)
+--.|+|||+.-++...+..|.+.|..-.-. .+-+|+++|..+.++...|..|+
T Consensus 222 ~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~ 285 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFRE 285 (368)
T ss_dssp TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccH
Confidence 3468999999999998888888877653100 23488888898888777665554
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.12 E-value=0.045 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|+.|+|||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 469
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.12 E-value=0.055 Score=50.86 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.+.-+.|+|++|+|||||++.|.+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998753
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.048 Score=48.58 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..--+.|+|+.|+|||||++.|.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3466999999999999999999874
No 471
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.047 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..--+.++|+.|+|||||++.|.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999853
No 472
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.09 E-value=0.048 Score=48.81 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..--+.|+|+.|+|||||++.|.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34679999999999999999998754
No 473
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.09 E-value=0.048 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 459999999999999999998743
No 474
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.09 E-value=0.049 Score=48.05 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 475
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.07 E-value=0.046 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.--+.|+|+.|+|||||++.|.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 476
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.06 E-value=0.034 Score=50.01 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
--+.|+|++|+|||||++.|.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999965
No 477
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.05 E-value=0.049 Score=48.95 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..--+.|+|+.|+|||||++.|.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 478
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.02 E-value=0.047 Score=49.44 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|++|+|||||++.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 479
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.01 E-value=0.039 Score=48.08 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 480
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.95 E-value=0.045 Score=54.47 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
-+.|+|++|+|||||++.|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999993
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.95 E-value=0.054 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGATE 68 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l~ 68 (454)
|+-+.|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999998764
No 482
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.95 E-value=0.053 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|+.|+|||||++.|.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 34899999999999999988764
No 483
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.93 E-value=0.041 Score=50.02 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
...-+.|+|..|+|||||++.|.+.-
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34668999999999999999998753
No 484
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.91 E-value=0.052 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|+.|+|||||++.|.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458999999999999999998753
No 485
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.90 E-value=0.044 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhC
Q 012882 45 GLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 45 Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
-+.|+|.+|+|||||++.|++.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998764
No 486
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.87 E-value=0.037 Score=49.01 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
.--+.|+|+.|+|||||++.|.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999998643
No 487
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.85 E-value=0.051 Score=52.03 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhCC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
--+.|+|.+|+|||||++.|.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
No 488
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.82 E-value=0.05 Score=55.27 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
.+.-++|+|++|+|||||+++|.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3455899999999999999999986
No 489
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.82 E-value=0.068 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 41 PAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..|.-+.|.|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356779999999999999999997654
No 490
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.81 E-value=0.053 Score=49.45 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
|.-++|.|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999998865
No 491
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.81 E-value=0.056 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 492
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.80 E-value=0.054 Score=48.85 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..-+.++|+.|+|||||++.|.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998743
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.78 E-value=0.054 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.|+|+.|+|||||++.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 494
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.76 E-value=0.068 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
...-+.|+|..|+|||||++.|.+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998764
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.69 E-value=0.07 Score=47.58 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..--+.|+|+.|+|||||++.|.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4466999999999999999999863
No 496
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.67 E-value=0.063 Score=52.80 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Q 012882 42 APKGLYLYGNVGSGKTMLMDMFYG 65 (454)
Q Consensus 42 ~p~Gl~L~GpnGsGKTTLm~ll~g 65 (454)
.++|+.|.|++|+||||++..+.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 378999999999999999999876
No 497
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.66 E-value=0.06 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
..-+.|+|+.|+|||||++.|.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999864
No 498
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.63 E-value=0.1 Score=50.43 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 43 PKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 43 p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
..-+.++|..|+|||||++.|.|.-
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 3469999999999999999999853
No 499
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.62 E-value=0.071 Score=54.07 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882 40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 67 (454)
Q Consensus 40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l 67 (454)
...++-+.|+||+|+|||||+.+|+..+
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3457789999999999999999998754
No 500
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.62 E-value=0.058 Score=49.06 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhC
Q 012882 44 KGLYLYGNVGSGKTMLMDMFYGA 66 (454)
Q Consensus 44 ~Gl~L~GpnGsGKTTLm~ll~g~ 66 (454)
--+.++|+.|+|||||++.|.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
Done!