BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012883
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 134/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+G+L+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR LF +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +P IGEFQ +
Sbjct: 191 SYPQSQGWEFPRIGEFQCY 209
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 7 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 66
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR LF +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 67 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 126
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 127 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 186
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +P IGEFQ +
Sbjct: 187 SYPQSQGWEFPRIGEFQCY 205
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 134/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WWGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR L +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI + +GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+PVYVML V+N DP+ +++++ ++A VDGV+V+ WGI+E P++Y W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YR LF +++E L +Q +M+FH+ G N I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD E + +GRT IE+Y D+M+SFR D +GLI +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
S + GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 94/199 (47%), Positives = 130/199 (65%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+ +YVML V+N D E + E+ +KA DGV+V+ WWGI+E P++Y WS
Sbjct: 12 YVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWS 71
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
YRELF ++++ LK+Q +M+FH+ G N +I +PQW+++IG N DIF+T+R G R
Sbjct: 72 AYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNR 131
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E LS GVD +R+ GRT +E+Y DFM SFR D AG I +E+G G +GEL+YP
Sbjct: 132 NQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYP 191
Query: 428 SLSERMGWRYPGIGEFQIF 446
S E GW +PGIGEFQ +
Sbjct: 192 SYPETQGWVFPGIGEFQCY 210
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 127/196 (64%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+ VYVML ++ + + +R ++ + VDGV+V+ WWG+VEG P+ Y WS
Sbjct: 5 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 64
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
Y++LF ++++ LK+Q +M+FH+ G N I +PQWV ++G + DIF+TD G R
Sbjct: 65 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 124
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD + + +GR+ +++Y D+M SFR D AG+I +E+GLGP+GEL+YP
Sbjct: 125 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYP 184
Query: 428 SLSERMGWRYPGIGEF 443
S + GW +PGIGEF
Sbjct: 185 SYPQSHGWSFPGIGEF 200
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 127/196 (64%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
Y+ VYVML ++ + + +R ++ + VDGV+V+ WWG+VEG P+ Y WS
Sbjct: 9 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 68
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
Y++LF ++++ LK+Q +M+FH+ G N I +PQWV ++G + DIF+TD G R
Sbjct: 69 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 128
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
N E L+ GVD + + +GR+ +++Y D+M SFR + AG+I +E+GLGP+GE++YP
Sbjct: 129 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYP 188
Query: 428 SLSERMGWRYPGIGEF 443
S + GW +PGIGEF
Sbjct: 189 SYPQSHGWSFPGIGEF 204
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 15/191 (7%)
Query: 259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE 318
V+ ++ D ++++ +K V + + WWG VE ++ WS Y+ N ++E
Sbjct: 10 VMGPLAKINDWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTYANAVKE 69
Query: 319 FNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLS--WGV 376
LK +++ H+ G N D I LP W+ G ++ + F D G N+E LS W
Sbjct: 70 AGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSADE-MQFKDESGYANSEALSPLWSG 128
Query: 377 DKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWR 436
G+ E+Y F +F +I + + GPSGEL+YPS GW
Sbjct: 129 ------TGKQYDELYASFAENFAG------YKSIIPKIYLSGGPSGELRYPSYYPAAGWS 176
Query: 437 YPGIGEFQIFT 447
YPG G+FQ +T
Sbjct: 177 YPGRGKFQAYT 187
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 286 GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345
++V+ WWG +E Q++ +S + ++ +K+ +++ H+ G N D + +P
Sbjct: 45 AIMVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 346 QWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDL 405
WV K + ++F G N E L+ V+ G E+Y F + + D
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD-- 158
Query: 406 FVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFT 447
+I +E+ GP+GEL+YPS + G YP G+FQ +T
Sbjct: 159 ----VIAKIELSGGPAGELRYPSYTTSDGTGYPSRGKFQAYT 196
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 286 GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345
+ V+ WWG +E Q++ +S + ++ +K+ +++ H+ G N D + +P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 346 QWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDL 405
WV K + ++F G N E L+ V+ G E+Y F + + D
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD-- 158
Query: 406 FVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFT 447
+I +E+ GP+GEL+YPS + G YP G+FQ +T
Sbjct: 159 ----VIAKIELSGGPAGELRYPSYTTSDGTGYPSRGKFQAYT 196
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 286 GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345
+ V+ WWG +E Q++ +S + ++ +K+ +++ H+ G N D + +P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 346 QWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDL 405
WV K + ++F G N E L+ V+ G E+Y F + + D
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKD-- 158
Query: 406 FVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFT 447
+I + + GP+GEL+YPS + G YP G+FQ +T
Sbjct: 159 ----VIAKIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYT 196
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 286 GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345
+ V+ WWG +E Q++ +S + ++ +K+ +++ H+ G N D + +P
Sbjct: 45 AITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIP 104
Query: 346 QWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDF---MRSFRTEF 402
WV K + ++F G N E L+ V+ G E+Y F M+ ++
Sbjct: 105 SWVWN-QKSDDSLYFKSETGTVNKETLN--PLASDVIRKEYG-ELYTAFAAAMKPYKDVI 160
Query: 403 DDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFT 447
+F++G GP+GEL+YPS + G YP G+FQ +T
Sbjct: 161 AKIFLSG---------GPAGELRYPSYTTSDGTGYPSRGKFQAYT 196
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 10/183 (5%)
Query: 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324
++ + E ++ K + V+ WWG +E Q++ +S + ++ +K+
Sbjct: 24 EVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMI 83
Query: 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNG 384
+++ H+ G N D + +P WV K + ++F G N E L+ V+
Sbjct: 84 PIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGTVNKETLN--PLASDVIRK 140
Query: 385 RTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQ 444
G E+Y F + + D +I + + GP+G L+YPS + G YP G+FQ
Sbjct: 141 EYG-ELYTAFAAAMKPYKD------VIAKIYLSGGPAGALRYPSYTTSDGTGYPSRGKFQ 193
Query: 445 IFT 447
+T
Sbjct: 194 AYT 196
>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|2 Chain 2, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|3 Chain 3, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|4 Chain 4, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
Length = 297
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 190 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 220
>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|B Chain B, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|C Chain C, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|D Chain D, The D-Sialic Acid Aldolase Mutant V251r
Length = 319
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 212 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 242
>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|B Chain B, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|C Chain C, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|D Chain D, The D-Sialic Acid Aldolase Mutant V251w
Length = 319
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 212 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 242
>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2YGY|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
Length = 304
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 197 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 227
>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|B Chain B, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|C Chain C, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|D Chain D, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBM|A Chain A, D-Sialic Acid Aldolase
pdb|3LBM|B Chain B, D-Sialic Acid Aldolase
pdb|3LBM|C Chain C, D-Sialic Acid Aldolase
pdb|3LBM|D Chain D, D-Sialic Acid Aldolase
Length = 319
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 212 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 242
>pdb|1HL2|A Chain A, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|B Chain B, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|C Chain C, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|D Chain D, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
Length = 297
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 190 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 220
>pdb|2WNN|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
pdb|2WNN|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Complex With Pyruvate In Space Group P21
Length = 303
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 197 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 227
>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|B Chain B, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|C Chain C, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|D Chain D, The D-Sialic Acid Aldolase Mutant V251l
Length = 319
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 212 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 242
>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|B Chain B, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|C Chain C, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|D Chain D, The D-Sialic Acid Aldolase Mutant V251i
Length = 319
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 212 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 242
>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
Length = 304
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 197 YDNIFASGLLAGADGGIGSTYNI--------MGWRYQGI 227
>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|B Chain B, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|C Chain C, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|D Chain D, The D-Sialic Acid Aldolase Mutant V251iV265I
Length = 319
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 212 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 242
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
Length = 297
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 190 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 220
>pdb|2WKJ|A Chain A, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|B Chain B, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|C Chain C, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
pdb|2WKJ|D Chain D, Crystal Structure Of The E192n Mutant Of E.Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
At 1.45a Resolution In Space Group P212121
Length = 303
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 197 YDNIFASGLLAGADGGIGSTYNI--------MGWRYQGI 227
>pdb|2WNZ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WNZ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Space Group P21 Crystal Form I
pdb|2WPB|A Chain A, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|B Chain B, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|C Chain C, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2WPB|D Chain D, Crystal Structure Of The E192n Mutant Of E. Coli N-
Acetylneuraminic Acid Lyase In Complex With Pyruvate And
The Inhibitor (2r,3r)-2,3,4-Trihydroxy-N,N-
Dipropylbutanamide In Space Group P21 Crystal Form I
pdb|2XFW|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
pdb|2XFW|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Complex With Pyruvate
In Crystal Form Ii
Length = 304
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 197 YDNIFASGLLAGADGGIGSTYNI--------MGWRYQGI 227
>pdb|3LCW|A Chain A, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|B Chain B, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|C Chain C, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|D Chain D, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCX|A Chain A, L-Kdo Aldolase
pdb|3LCX|B Chain B, L-Kdo Aldolase
pdb|3LCX|C Chain C, L-Kdo Aldolase
pdb|3LCX|D Chain D, L-Kdo Aldolase
Length = 319
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Query: 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440
+D++F +GL+ + G+G + + MGWRY GI
Sbjct: 212 YDEIFASGLLAGADGGIGSTYNI--------MGWRYQGI 242
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator
Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 367 RNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLF 406
R SW V ER+L G+ + DF+R +E + LF
Sbjct: 8 RERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILF 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,374,640
Number of Sequences: 62578
Number of extensions: 455072
Number of successful extensions: 967
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 39
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)