Query 012883
Match_columns 454
No_of_seqs 140 out of 201
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 07:18:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02705 beta-amylase 100.0 9E-180 2E-184 1386.8 35.5 410 27-453 34-451 (681)
2 PLN02905 beta-amylase 100.0 4E-158 8E-163 1228.2 34.9 388 55-453 68-469 (702)
3 PLN00197 beta-amylase; Provisi 100.0 7E-106 2E-110 828.7 22.4 212 241-453 98-310 (573)
4 PLN02803 beta-amylase 100.0 1E-105 3E-110 824.0 22.2 209 244-453 81-290 (548)
5 PLN02801 beta-amylase 100.0 2E-105 4E-110 819.6 21.6 209 245-453 12-220 (517)
6 PLN02161 beta-amylase 100.0 2E-103 4E-108 805.9 22.4 211 242-453 85-300 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 2.1E-93 4.5E-98 716.9 14.1 189 252-453 1-189 (402)
8 PF05687 DUF822: Plant protein 100.0 2.2E-43 4.7E-48 316.5 10.1 131 61-204 1-133 (150)
9 PF02449 Glyco_hydro_42: Beta- 98.8 2.3E-08 5E-13 98.5 10.2 132 268-423 8-141 (374)
10 PF01301 Glyco_hydro_35: Glyco 98.1 1.3E-05 2.7E-10 79.4 9.6 76 269-351 23-103 (319)
11 PLN03059 beta-galactosidase; P 97.2 0.0022 4.8E-08 71.8 11.0 115 268-416 57-183 (840)
12 PF00150 Cellulase: Cellulase 97.0 0.0026 5.7E-08 58.0 8.1 60 270-331 21-84 (281)
13 TIGR03356 BGL beta-galactosida 96.8 0.0053 1.2E-07 63.2 8.8 111 266-416 50-164 (427)
14 PLN02705 beta-amylase 96.3 0.0062 1.3E-07 66.6 6.1 45 384-434 437-482 (681)
15 COG1874 LacA Beta-galactosidas 96.0 0.023 5E-07 62.7 8.2 85 268-367 28-114 (673)
16 PF00232 Glyco_hydro_1: Glycos 95.4 0.028 6.1E-07 58.0 6.1 74 266-351 54-131 (455)
17 cd03465 URO-D_like The URO-D _ 95.3 0.15 3.2E-06 49.1 10.0 107 272-391 170-287 (330)
18 KOG0496 Beta-galactosidase [Ca 94.9 0.079 1.7E-06 58.4 7.9 142 268-419 47-203 (649)
19 smart00633 Glyco_10 Glycosyl h 94.7 0.092 2E-06 49.9 7.0 46 293-349 3-48 (254)
20 PRK09852 cryptic 6-phospho-bet 94.6 0.13 2.8E-06 54.4 8.3 74 266-351 67-144 (474)
21 PF14871 GHL6: Hypothetical gl 93.6 0.85 1.8E-05 40.8 10.3 107 274-404 4-121 (132)
22 PRK15014 6-phospho-beta-glucos 92.8 0.29 6.3E-06 51.7 7.0 74 266-351 65-142 (477)
23 PF02638 DUF187: Glycosyl hydr 92.1 3.1 6.6E-05 41.7 12.9 154 266-446 15-183 (311)
24 TIGR01233 lacG 6-phospho-beta- 90.2 0.71 1.5E-05 48.6 6.7 74 266-351 49-125 (467)
25 TIGR01463 mtaA_cmuA methyltran 90.1 0.53 1.1E-05 46.2 5.3 59 272-334 182-243 (340)
26 PRK13511 6-phospho-beta-galact 89.5 0.81 1.8E-05 48.1 6.4 74 266-351 50-126 (469)
27 cd00465 URO-D_CIMS_like The UR 88.9 0.77 1.7E-05 43.8 5.3 117 270-402 144-274 (306)
28 PRK02412 aroD 3-dehydroquinate 88.7 6.2 0.00013 38.3 11.4 124 261-424 85-211 (253)
29 PRK01060 endonuclease IV; Prov 87.8 1.3 2.8E-05 41.8 5.9 66 254-332 1-71 (281)
30 PF10566 Glyco_hydro_97: Glyco 87.7 0.44 9.6E-06 47.6 3.0 103 244-374 82-185 (273)
31 PLN02814 beta-glucosidase 87.2 1.6 3.4E-05 46.7 6.9 73 266-350 73-148 (504)
32 cd03311 CIMS_C_terminal_like C 86.9 3.8 8.3E-05 40.2 8.9 118 269-388 154-280 (332)
33 cd03307 Mta_CmuA_like MtaA_Cmu 86.8 0.76 1.6E-05 45.0 4.0 55 274-334 175-232 (326)
34 PRK13111 trpA tryptophan synth 86.3 3.5 7.5E-05 40.6 8.3 88 247-365 88-176 (258)
35 PF00331 Glyco_hydro_10: Glyco 86.1 2 4.3E-05 42.8 6.6 64 276-351 27-93 (320)
36 cd03308 CmuA_CmuC_like CmuA_Cm 85.7 1.4 3E-05 44.8 5.3 82 248-333 172-277 (378)
37 PRK09593 arb 6-phospho-beta-gl 85.6 2.5 5.3E-05 44.9 7.3 73 266-350 69-145 (478)
38 PRK09589 celA 6-phospho-beta-g 85.3 2.1 4.5E-05 45.4 6.5 74 266-351 63-140 (476)
39 PF00128 Alpha-amylase: Alpha 85.2 1.9 4.2E-05 39.3 5.5 65 268-335 2-81 (316)
40 TIGR01093 aroD 3-dehydroquinat 84.5 7.3 0.00016 36.9 9.2 109 276-425 84-194 (228)
41 PRK06252 methylcobalamin:coenz 84.2 1.2 2.5E-05 43.7 3.9 56 273-334 183-241 (339)
42 PLN02849 beta-glucosidase 83.7 2.8 6E-05 45.0 6.7 74 266-351 75-151 (503)
43 PLN02998 beta-glucosidase 83.0 3.1 6.6E-05 44.6 6.7 73 266-350 78-153 (497)
44 PF01208 URO-D: Uroporphyrinog 82.8 1 2.2E-05 43.9 2.9 113 274-399 186-307 (343)
45 PRK08508 biotin synthase; Prov 82.1 9.6 0.00021 37.3 9.2 53 267-325 40-93 (279)
46 PF01261 AP_endonuc_2: Xylose 81.9 1.4 3.1E-05 38.2 3.1 47 276-327 1-47 (213)
47 PF01487 DHquinase_I: Type I 3 81.8 8.1 0.00018 36.1 8.3 130 253-424 57-188 (224)
48 PLN02591 tryptophan synthase 81.5 8.4 0.00018 38.0 8.6 80 247-357 77-156 (250)
49 PLN02361 alpha-amylase 80.5 5.9 0.00013 41.5 7.5 67 267-336 26-106 (401)
50 PHA00442 host recBCD nuclease 80.4 1.6 3.5E-05 35.3 2.7 28 273-319 29-56 (59)
51 PRK11572 copper homeostasis pr 80.3 6.6 0.00014 39.2 7.5 74 248-332 51-127 (248)
52 PRK13209 L-xylulose 5-phosphat 80.0 3.6 7.9E-05 38.8 5.4 67 255-326 8-76 (283)
53 PRK09856 fructoselysine 3-epim 79.4 4.9 0.00011 37.7 6.0 53 271-330 14-70 (275)
54 cd00502 DHQase_I Type I 3-dehy 78.3 18 0.0004 33.9 9.5 123 259-424 64-188 (225)
55 cd08627 PI-PLCc_gamma1 Catalyt 78.1 5.1 0.00011 39.6 5.9 63 264-329 24-95 (229)
56 cd06592 GH31_glucosidase_KIAA1 77.6 12 0.00027 36.9 8.5 83 267-365 27-116 (303)
57 PF07745 Glyco_hydro_53: Glyco 77.4 5.1 0.00011 41.1 5.9 53 274-331 28-80 (332)
58 smart00642 Aamy Alpha-amylase 76.8 10 0.00023 34.6 7.2 69 266-334 15-97 (166)
59 cd00717 URO-D Uroporphyrinogen 76.0 3.3 7.1E-05 40.7 4.0 76 274-364 181-260 (335)
60 PRK10785 maltodextrin glucosid 75.5 26 0.00056 38.2 10.8 63 268-333 177-252 (598)
61 PF00290 Trp_syntA: Tryptophan 75.3 7.5 0.00016 38.6 6.3 89 246-365 85-174 (259)
62 PF13653 GDPD_2: Glycerophosph 74.4 2.9 6.3E-05 29.6 2.3 18 273-290 10-27 (30)
63 cd04724 Tryptophan_synthase_al 73.4 9.2 0.0002 36.7 6.2 64 248-330 76-139 (242)
64 cd08592 PI-PLCc_gamma Catalyti 72.8 6.6 0.00014 38.8 5.2 63 264-329 24-95 (229)
65 TIGR01464 hemE uroporphyrinoge 72.4 4.7 0.0001 39.8 4.1 75 274-364 184-263 (338)
66 PF14488 DUF4434: Domain of un 72.2 14 0.0003 34.2 6.9 58 268-329 18-87 (166)
67 PRK13210 putative L-xylulose 5 71.0 12 0.00026 35.1 6.2 52 271-326 17-71 (284)
68 TIGR00433 bioB biotin syntheta 70.3 11 0.00023 36.1 5.9 55 273-329 123-180 (296)
69 PLN02433 uroporphyrinogen deca 70.2 5.4 0.00012 39.9 4.0 57 274-334 183-242 (345)
70 TIGR00542 hxl6Piso_put hexulos 69.9 11 0.00023 35.9 5.8 55 269-326 15-71 (279)
71 PF03659 Glyco_hydro_71: Glyco 69.6 15 0.00033 38.3 7.2 56 268-330 15-70 (386)
72 TIGR03234 OH-pyruv-isom hydrox 67.8 13 0.00027 34.8 5.7 43 271-325 15-57 (254)
73 PRK00115 hemE uroporphyrinogen 67.8 6.4 0.00014 39.3 4.0 77 273-364 189-269 (346)
74 PRK00957 methionine synthase; 66.7 31 0.00067 33.8 8.3 80 270-367 144-224 (305)
75 cd06593 GH31_xylosidase_YicI Y 66.2 17 0.00037 35.5 6.5 59 266-327 20-86 (308)
76 PLN02389 biotin synthase 65.4 15 0.00032 38.2 6.1 50 273-323 178-229 (379)
77 PRK05222 5-methyltetrahydropte 64.5 20 0.00042 40.5 7.3 127 269-407 580-718 (758)
78 cd03309 CmuC_like CmuC_like. P 64.1 7.1 0.00015 39.4 3.5 116 276-404 161-291 (321)
79 CHL00200 trpA tryptophan synth 63.9 37 0.00081 33.7 8.4 90 247-367 90-180 (263)
80 cd08631 PI-PLCc_delta4 Catalyt 63.9 13 0.00029 37.4 5.3 64 263-329 23-95 (258)
81 PRK09989 hypothetical protein; 63.4 19 0.00042 33.9 6.1 43 271-325 16-58 (258)
82 PF03932 CutC: CutC family; I 61.7 12 0.00026 36.1 4.4 71 246-331 48-121 (201)
83 TIGR00262 trpA tryptophan synt 61.0 30 0.00065 33.9 7.0 64 248-330 87-150 (256)
84 PF01717 Meth_synt_2: Cobalami 60.8 28 0.0006 34.4 6.8 87 269-367 153-245 (324)
85 PRK09997 hydroxypyruvate isome 60.6 19 0.00041 34.0 5.4 41 271-323 16-56 (258)
86 COG2723 BglB Beta-glucosidase/ 60.5 81 0.0017 34.4 10.6 115 266-419 55-174 (460)
87 PF01026 TatD_DNase: TatD rela 60.4 66 0.0014 30.7 9.1 48 272-331 16-63 (255)
88 PF01229 Glyco_hydro_39: Glyco 59.6 14 0.00031 38.8 4.9 136 270-420 39-202 (486)
89 cd08625 PI-PLCc_beta3 Catalyti 59.2 18 0.0004 36.2 5.3 68 263-331 23-101 (258)
90 PRK06520 5-methyltetrahydropte 58.7 16 0.00035 37.5 5.0 133 269-407 169-327 (368)
91 cd08624 PI-PLCc_beta2 Catalyti 58.5 21 0.00046 36.0 5.6 67 264-331 24-101 (261)
92 PLN02808 alpha-galactosidase 58.4 18 0.0004 38.1 5.4 60 267-327 46-117 (386)
93 TIGR01515 branching_enzym alph 58.4 23 0.00049 38.7 6.3 56 268-329 154-228 (613)
94 cd08626 PI-PLCc_beta4 Catalyti 57.8 22 0.00048 35.8 5.6 66 263-329 23-97 (257)
95 cd08593 PI-PLCc_delta Catalyti 57.7 21 0.00047 35.8 5.5 63 264-329 24-95 (257)
96 cd08597 PI-PLCc_PRIP_metazoa C 57.6 20 0.00044 36.0 5.4 66 264-332 24-100 (260)
97 PRK04326 methionine synthase; 57.5 19 0.00041 35.5 5.1 78 270-364 161-239 (330)
98 COG0407 HemE Uroporphyrinogen- 57.3 19 0.00041 37.6 5.2 63 270-335 189-252 (352)
99 PRK09441 cytoplasmic alpha-amy 57.1 26 0.00057 36.7 6.3 67 268-334 20-108 (479)
100 TIGR02456 treS_nterm trehalose 56.6 50 0.0011 35.3 8.4 66 266-334 24-103 (539)
101 PRK13398 3-deoxy-7-phosphohept 56.6 36 0.00079 33.8 6.9 63 260-325 31-96 (266)
102 TIGR02402 trehalose_TreZ malto 56.5 28 0.00061 37.6 6.5 61 268-333 109-186 (542)
103 PF01055 Glyco_hydro_31: Glyco 56.3 29 0.00064 35.4 6.4 60 266-329 39-105 (441)
104 cd01310 TatD_DNAse TatD like p 55.3 1.1E+02 0.0025 27.7 9.3 46 272-330 17-62 (251)
105 PRK10933 trehalose-6-phosphate 55.1 34 0.00074 37.0 6.9 65 266-333 29-107 (551)
106 PLN02475 5-methyltetrahydropte 54.8 43 0.00092 38.2 7.8 126 269-407 585-724 (766)
107 PF02065 Melibiase: Melibiase; 54.5 25 0.00054 36.9 5.6 80 267-350 55-145 (394)
108 cd08212 RuBisCO_large_I Ribulo 54.5 24 0.00052 37.9 5.6 53 268-331 224-276 (450)
109 TIGR00674 dapA dihydrodipicoli 54.0 28 0.00061 33.8 5.6 114 246-384 65-183 (285)
110 TIGR02403 trehalose_treC alpha 53.1 43 0.00093 36.1 7.2 65 266-333 23-101 (543)
111 cd00958 DhnA Class I fructose- 52.5 24 0.00051 33.0 4.7 86 267-362 73-163 (235)
112 PRK15452 putative protease; Pr 52.1 16 0.00035 38.8 3.9 45 246-296 57-101 (443)
113 CHL00040 rbcL ribulose-1,5-bis 51.2 29 0.00064 37.6 5.7 54 268-331 246-299 (475)
114 PLN02229 alpha-galactosidase 51.0 41 0.00088 36.2 6.6 70 267-337 77-160 (427)
115 smart00518 AP2Ec AP endonuclea 50.9 46 0.001 31.3 6.3 59 269-332 44-106 (273)
116 TIGR01371 met_syn_B12ind 5-met 50.7 54 0.0012 37.1 7.8 83 270-363 575-662 (750)
117 PRK12595 bifunctional 3-deoxy- 50.6 47 0.001 34.5 6.8 71 248-325 117-187 (360)
118 PF13407 Peripla_BP_4: Peripla 50.5 1.2E+02 0.0026 27.4 8.6 109 267-405 39-151 (257)
119 PLN00196 alpha-amylase; Provis 50.4 51 0.0011 34.9 7.2 64 268-334 42-119 (428)
120 cd00598 GH18_chitinase-like Th 50.4 65 0.0014 28.8 6.9 80 247-330 63-149 (210)
121 TIGR03699 mena_SCO4550 menaqui 50.1 15 0.00033 36.4 3.2 50 273-327 143-201 (340)
122 TIGR03326 rubisco_III ribulose 50.1 28 0.0006 37.0 5.2 54 268-331 222-275 (412)
123 PF04187 DUF399: Protein of un 49.9 11 0.00025 35.8 2.1 24 303-326 85-108 (213)
124 PF01791 DeoC: DeoC/LacD famil 49.7 12 0.00025 35.4 2.2 53 273-326 79-131 (236)
125 KOG0626 Beta-glucosidase, lact 49.7 62 0.0013 35.8 7.8 73 266-350 87-164 (524)
126 TIGR02104 pulA_typeI pullulana 49.5 40 0.00087 36.7 6.4 65 269-333 163-256 (605)
127 PRK04208 rbcL ribulose bisopho 49.2 30 0.00066 37.4 5.4 54 269-332 240-293 (468)
128 cd08630 PI-PLCc_delta3 Catalyt 48.9 34 0.00074 34.5 5.3 63 264-329 24-95 (258)
129 TIGR03551 F420_cofH 7,8-dideme 48.7 17 0.00038 36.3 3.3 57 273-329 141-201 (343)
130 TIGR02631 xylA_Arthro xylose i 48.6 22 0.00048 36.9 4.1 55 269-328 31-89 (382)
131 PRK03620 5-dehydro-4-deoxygluc 48.5 32 0.00068 34.1 5.0 111 246-384 74-189 (303)
132 PLN02417 dihydrodipicolinate s 48.4 85 0.0018 30.8 7.9 93 247-366 69-164 (280)
133 PRK08508 biotin synthase; Prov 48.3 23 0.00049 34.8 4.0 69 273-351 102-178 (279)
134 PRK07094 biotin synthase; Prov 48.2 39 0.00085 33.1 5.6 50 273-327 129-185 (323)
135 cd01299 Met_dep_hydrolase_A Me 47.8 62 0.0013 31.3 6.8 64 266-333 116-182 (342)
136 PRK09875 putative hydrolase; P 47.5 64 0.0014 32.5 7.1 69 263-350 27-95 (292)
137 PLN02692 alpha-galactosidase 47.5 34 0.00073 36.6 5.3 56 268-325 71-139 (412)
138 cd08629 PI-PLCc_delta1 Catalyt 47.5 41 0.00088 34.0 5.6 66 264-332 24-100 (258)
139 COG0159 TrpA Tryptophan syntha 47.2 85 0.0019 31.9 7.8 89 246-366 92-182 (265)
140 cd03310 CIMS_like CIMS - Cobal 45.9 96 0.0021 30.1 7.8 59 270-334 151-211 (321)
141 PRK12313 glycogen branching en 45.9 55 0.0012 35.8 6.8 62 266-333 166-246 (633)
142 cd08213 RuBisCO_large_III Ribu 45.6 30 0.00066 36.7 4.7 53 269-331 210-262 (412)
143 cd06591 GH31_xylosidase_XylS X 45.6 57 0.0012 32.6 6.3 57 267-328 21-87 (319)
144 PF12868 DUF3824: Domain of un 44.8 5.5 0.00012 36.6 -0.7 9 73-81 36-44 (137)
145 cd08598 PI-PLC1c_yeast Catalyt 44.8 36 0.00078 33.8 4.8 64 263-329 23-95 (231)
146 cd08206 RuBisCO_large_I_II_III 44.8 37 0.0008 36.2 5.1 53 269-331 212-264 (414)
147 cd00951 KDGDH 5-dehydro-4-deox 44.8 1.3E+02 0.0029 29.5 8.6 113 246-384 67-182 (289)
148 PRK07360 FO synthase subunit 2 44.7 38 0.00083 34.6 5.1 53 272-329 162-223 (371)
149 COG3142 CutC Uncharacterized p 44.2 55 0.0012 33.1 5.9 76 247-333 50-128 (241)
150 COG2342 Predicted extracellula 44.1 43 0.00093 34.8 5.3 64 270-336 126-197 (300)
151 TIGR00695 uxuA mannonate dehyd 43.9 39 0.00085 35.9 5.1 50 275-330 15-66 (394)
152 COG2019 AdkA Archaeal adenylat 43.8 41 0.00088 32.9 4.8 90 314-414 73-168 (189)
153 TIGR00423 radical SAM domain p 43.8 26 0.00055 34.6 3.6 52 272-327 106-165 (309)
154 PF01183 Glyco_hydro_25: Glyco 43.6 48 0.001 29.8 5.0 109 276-407 12-120 (181)
155 TIGR00683 nanA N-acetylneurami 43.2 85 0.0018 31.0 7.1 97 246-366 68-167 (290)
156 cd08623 PI-PLCc_beta1 Catalyti 43.0 38 0.00083 34.2 4.7 68 263-331 23-101 (258)
157 PRK09121 5-methyltetrahydropte 42.9 48 0.001 33.8 5.4 124 270-407 156-300 (339)
158 PRK03906 mannonate dehydratase 42.9 38 0.00083 35.6 4.8 52 275-330 15-66 (385)
159 COG4130 Predicted sugar epimer 42.8 29 0.00062 35.2 3.7 126 243-393 91-228 (272)
160 cd08594 PI-PLCc_eta Catalytic 42.5 55 0.0012 32.6 5.6 66 264-332 24-100 (227)
161 PRK13125 trpA tryptophan synth 41.9 74 0.0016 30.6 6.3 65 248-329 74-138 (244)
162 COG2179 Predicted hydrolase of 41.9 56 0.0012 31.6 5.4 52 273-326 17-68 (175)
163 PF04476 DUF556: Protein of un 41.1 40 0.00086 33.8 4.4 44 276-323 137-183 (235)
164 PF10255 Paf67: RNA polymerase 40.7 23 0.00049 37.7 2.9 33 305-354 6-39 (404)
165 TIGR00677 fadh2_euk methylenet 40.4 69 0.0015 31.9 6.0 61 281-353 159-225 (281)
166 PF01136 Peptidase_U32: Peptid 40.3 28 0.00061 32.3 3.1 59 270-328 2-92 (233)
167 cd06589 GH31 The enzymes of gl 40.3 73 0.0016 30.8 6.0 70 267-353 21-99 (265)
168 COG1082 IolE Sugar phosphate i 39.8 61 0.0013 30.0 5.2 50 270-326 15-64 (274)
169 cd08595 PI-PLCc_zeta Catalytic 39.8 25 0.00054 35.4 2.9 63 264-329 24-95 (257)
170 cd08596 PI-PLCc_epsilon Cataly 39.6 75 0.0016 32.1 6.1 66 264-332 24-100 (254)
171 TIGR03700 mena_SCO4494 putativ 39.0 53 0.0011 33.2 5.0 53 272-329 149-210 (351)
172 PF00701 DHDPS: Dihydrodipicol 38.6 94 0.002 30.2 6.5 94 247-367 69-167 (289)
173 PRK09993 C-lysozyme inhibitor; 38.4 25 0.00055 33.3 2.5 28 361-388 107-135 (153)
174 cd02876 GH18_SI-CLP Stabilin-1 38.3 64 0.0014 31.8 5.4 46 271-318 96-141 (318)
175 PRK02227 hypothetical protein; 37.8 45 0.00097 33.4 4.2 46 274-323 135-183 (238)
176 PRK06256 biotin synthase; Vali 37.2 44 0.00095 33.0 4.1 51 273-329 152-209 (336)
177 cd00019 AP2Ec AP endonuclease 37.1 1E+02 0.0022 29.3 6.4 22 270-291 10-31 (279)
178 smart00729 Elp3 Elongator prot 37.1 1.7E+02 0.0037 25.0 7.2 57 268-330 134-190 (216)
179 PRK06233 hypothetical protein; 37.0 85 0.0018 32.4 6.2 138 269-407 170-330 (372)
180 PRK00009 phosphoenolpyruvate c 36.9 31 0.00066 40.2 3.3 71 290-364 563-641 (911)
181 PRK12677 xylose isomerase; Pro 36.7 86 0.0019 32.7 6.2 52 271-327 32-87 (384)
182 PRK12858 tagatose 1,6-diphosph 36.6 68 0.0015 33.2 5.5 65 275-339 111-175 (340)
183 KOG4246 Predicted DNA-binding 36.5 30 0.00065 40.5 3.1 16 67-82 322-337 (1194)
184 TIGR00010 hydrolase, TatD fami 36.5 1E+02 0.0023 28.1 6.1 47 272-331 17-63 (252)
185 COG2352 Ppc Phosphoenolpyruvat 36.4 32 0.0007 40.1 3.3 67 266-339 532-612 (910)
186 cd06598 GH31_transferase_CtsZ 36.3 96 0.0021 31.0 6.3 65 266-330 20-93 (317)
187 TIGR02529 EutJ ethanolamine ut 36.2 1E+02 0.0022 29.6 6.3 63 254-328 25-96 (239)
188 PF05706 CDKN3: Cyclin-depende 36.1 27 0.00059 33.3 2.4 48 269-324 57-104 (168)
189 cd08209 RLP_DK-MTP-1-P-enolase 36.0 49 0.0011 35.0 4.4 50 268-330 202-253 (391)
190 PF03009 GDPD: Glycerophosphor 35.8 41 0.00089 30.0 3.4 20 275-294 15-34 (256)
191 TIGR03849 arch_ComA phosphosul 35.8 84 0.0018 31.4 5.7 71 269-351 70-140 (237)
192 cd00945 Aldolase_Class_I Class 35.7 90 0.0019 27.2 5.4 26 269-294 64-89 (201)
193 cd03174 DRE_TIM_metallolyase D 35.7 1.1E+02 0.0024 28.5 6.3 90 273-369 77-174 (265)
194 TIGR00423 radical SAM domain p 35.7 1.2E+02 0.0026 30.0 6.8 52 267-325 36-87 (309)
195 PRK04302 triosephosphate isome 35.6 96 0.0021 29.3 5.9 47 274-330 76-122 (223)
196 PRK14511 maltooligosyl trehalo 35.6 1.4E+02 0.003 35.1 8.1 67 268-335 18-97 (879)
197 PLN02222 phosphoinositide phos 35.5 71 0.0015 35.6 5.7 65 263-329 124-197 (581)
198 PF01630 Glyco_hydro_56: Hyalu 35.5 46 0.001 34.8 4.1 47 248-297 260-306 (337)
199 PTZ00398 phosphoenolpyruvate c 35.4 34 0.00073 40.1 3.4 51 282-339 616-672 (974)
200 PRK09505 malS alpha-amylase; R 35.3 1E+02 0.0022 34.8 6.9 66 268-333 228-318 (683)
201 cd02809 alpha_hydroxyacid_oxid 35.3 3.4E+02 0.0073 26.9 9.8 130 268-407 127-287 (299)
202 COG0154 GatA Asp-tRNAAsn/Glu-t 35.2 1.9E+02 0.0041 31.1 8.6 61 251-317 261-323 (475)
203 cd08591 PI-PLCc_beta Catalytic 35.2 33 0.00072 34.6 2.9 66 263-329 23-97 (257)
204 TIGR01235 pyruv_carbox pyruvat 34.9 1.3E+02 0.0028 36.0 7.9 67 257-323 639-705 (1143)
205 PF05226 CHASE2: CHASE2 domain 34.9 3.6E+02 0.0079 26.1 9.8 52 268-324 62-113 (310)
206 cd08560 GDPD_EcGlpQ_like_1 Gly 34.7 40 0.00088 34.9 3.5 49 274-326 249-297 (356)
207 PRK15108 biotin synthase; Prov 34.7 1.2E+02 0.0026 31.0 6.8 123 267-421 76-198 (345)
208 PF08874 DUF1835: Domain of un 34.7 97 0.0021 26.3 5.3 50 270-326 71-120 (124)
209 KOG0137 Very-long-chain acyl-C 34.3 35 0.00076 38.4 3.1 55 273-333 112-166 (634)
210 cd08208 RLP_Photo Ribulose bis 34.1 77 0.0017 34.0 5.5 50 268-330 238-287 (424)
211 COG2876 AroA 3-deoxy-D-arabino 34.1 86 0.0019 32.5 5.6 55 267-321 226-282 (286)
212 PF03786 UxuA: D-mannonate deh 34.1 41 0.0009 35.3 3.5 51 275-329 16-67 (351)
213 TIGR03332 salvage_mtnW 2,3-dik 33.7 65 0.0014 34.3 4.9 51 269-330 218-268 (407)
214 PF04854 DUF624: Protein of un 33.5 37 0.0008 26.8 2.4 24 383-406 37-60 (77)
215 PF02219 MTHFR: Methylenetetra 33.3 85 0.0018 30.8 5.3 62 281-353 170-236 (287)
216 smart00854 PGA_cap Bacterial c 33.3 98 0.0021 29.2 5.6 57 268-331 158-214 (239)
217 cd08580 GDPD_Rv2277c_like Glyc 33.3 36 0.00077 33.6 2.8 22 266-291 238-259 (263)
218 cd08207 RLP_NonPhot Ribulose b 33.2 72 0.0016 34.0 5.1 50 268-330 221-270 (406)
219 TIGR03586 PseI pseudaminic aci 33.1 1.2E+02 0.0025 31.4 6.4 72 250-325 1-95 (327)
220 PRK15108 biotin synthase; Prov 32.8 64 0.0014 32.9 4.5 50 273-323 136-187 (345)
221 cd06604 GH31_glucosidase_II_Ma 32.4 2.2E+02 0.0048 28.6 8.1 87 266-366 20-113 (339)
222 PF00016 RuBisCO_large: Ribulo 32.0 44 0.00096 34.3 3.3 48 268-325 93-140 (309)
223 COG0620 MetE Methionine syntha 31.9 1.2E+02 0.0025 31.3 6.2 65 269-339 157-227 (330)
224 TIGR02102 pullulan_Gpos pullul 31.6 96 0.0021 37.1 6.2 90 234-332 453-580 (1111)
225 cd08633 PI-PLCc_eta2 Catalytic 31.5 41 0.0009 33.9 2.9 66 264-332 24-100 (254)
226 PF01261 AP_endonuc_2: Xylose 31.5 45 0.00098 28.9 2.8 65 269-337 70-138 (213)
227 cd06545 GH18_3CO4_chitinase Th 31.5 75 0.0016 30.3 4.5 39 273-319 89-127 (253)
228 cd08148 RuBisCO_large Ribulose 31.5 77 0.0017 33.3 4.9 51 268-331 205-257 (366)
229 PF05378 Hydant_A_N: Hydantoin 31.4 1.1E+02 0.0023 28.5 5.4 45 268-320 132-176 (176)
230 cd08577 PI-PLCc_GDPD_SF_unchar 31.1 42 0.00091 32.6 2.8 44 277-320 16-68 (228)
231 PF02679 ComA: (2R)-phospho-3- 31.0 65 0.0014 32.3 4.1 89 246-351 65-153 (244)
232 TIGR02401 trehalose_TreY malto 30.7 1.8E+02 0.0039 34.0 7.9 67 268-335 14-93 (825)
233 smart00481 POLIIIAc DNA polyme 30.2 1.6E+02 0.0034 22.4 5.3 43 272-325 17-59 (67)
234 TIGR03569 NeuB_NnaB N-acetylne 30.2 77 0.0017 32.7 4.6 56 270-325 16-94 (329)
235 cd02874 GH18_CFLE_spore_hydrol 30.1 1.1E+02 0.0024 29.8 5.5 41 271-318 91-131 (313)
236 PRK08673 3-deoxy-7-phosphohept 30.0 1E+02 0.0022 32.0 5.5 58 263-325 100-162 (335)
237 PTZ00445 p36-lilke protein; Pr 29.9 1.2E+02 0.0027 30.2 5.7 62 266-327 25-98 (219)
238 cd00408 DHDPS-like Dihydrodipi 29.8 1.3E+02 0.0029 28.8 5.9 49 267-320 15-63 (281)
239 PF02126 PTE: Phosphotriestera 29.8 1.5E+02 0.0033 30.1 6.6 65 268-351 36-100 (308)
240 COG3693 XynA Beta-1,4-xylanase 29.6 39 0.00084 35.6 2.4 31 293-324 69-99 (345)
241 smart00636 Glyco_18 Glycosyl h 29.5 1.4E+02 0.0031 29.1 6.2 55 270-331 93-157 (334)
242 cd06549 GH18_trifunctional GH1 29.5 1.2E+02 0.0025 30.0 5.6 43 270-319 91-133 (298)
243 cd03319 L-Ala-DL-Glu_epimerase 29.2 93 0.002 30.5 4.8 49 264-325 235-284 (316)
244 cd04502 SGNH_hydrolase_like_7 29.0 1.6E+02 0.0034 25.5 5.7 72 247-318 88-169 (171)
245 COG2089 SpsE Sialic acid synth 29.0 74 0.0016 33.7 4.3 66 249-321 13-104 (347)
246 cd06565 GH20_GcnA-like Glycosy 29.0 5.5E+02 0.012 25.7 10.2 131 265-404 12-176 (301)
247 TIGR01949 AroFGH_arch predicte 28.3 95 0.0021 30.0 4.6 52 271-326 91-142 (258)
248 COG1038 PycA Pyruvate carboxyl 28.1 1.5E+02 0.0033 35.2 6.8 107 262-373 649-783 (1149)
249 PF10566 Glyco_hydro_97: Glyco 28.0 1.5E+02 0.0033 30.1 6.1 68 267-335 29-100 (273)
250 PRK08645 bifunctional homocyst 27.8 4E+02 0.0086 29.5 9.7 72 272-354 477-555 (612)
251 PF00704 Glyco_hydro_18: Glyco 27.7 1.5E+02 0.0032 28.5 5.8 45 270-317 101-146 (343)
252 cd08599 PI-PLCc_plant Catalyti 27.5 1.4E+02 0.003 29.7 5.7 63 264-329 24-95 (228)
253 PLN02489 homocysteine S-methyl 27.4 1.4E+02 0.0031 30.5 5.9 50 270-330 167-216 (335)
254 PRK09432 metF 5,10-methylenete 27.4 1.6E+02 0.0035 29.6 6.2 68 275-354 168-241 (296)
255 COG1312 UxuA D-mannonate dehyd 27.3 95 0.0021 33.0 4.7 52 275-332 15-70 (362)
256 PLN02962 hydroxyacylglutathion 27.2 1.8E+02 0.004 28.5 6.4 28 311-338 50-77 (251)
257 cd08574 GDPD_GDE_2_3_6 Glycero 27.1 58 0.0013 31.3 3.0 20 275-294 21-40 (252)
258 TIGR01769 GGGP geranylgeranylg 27.0 3.2E+02 0.007 26.5 7.9 49 270-329 11-59 (205)
259 COG3564 Uncharacterized protei 26.9 36 0.00077 30.8 1.4 25 313-338 14-38 (116)
260 smart00729 Elp3 Elongator prot 26.8 1.8E+02 0.0039 24.8 5.6 55 273-328 100-158 (216)
261 cd07941 DRE_TIM_LeuA3 Desulfob 26.6 1.5E+02 0.0032 29.1 5.7 88 274-368 82-178 (273)
262 PRK09936 hypothetical protein; 26.6 1.3E+02 0.0028 31.3 5.4 59 268-329 36-94 (296)
263 cd02810 DHOD_DHPD_FMN Dihydroo 26.4 91 0.002 30.0 4.1 52 268-319 109-160 (289)
264 cd08632 PI-PLCc_eta1 Catalytic 26.3 59 0.0013 32.9 2.9 63 264-329 24-95 (253)
265 cd08605 GDPD_GDE5_like_1_plant 26.2 62 0.0014 31.2 3.0 19 276-294 31-49 (282)
266 PRK12581 oxaloacetate decarbox 26.1 2.7E+02 0.0058 30.5 7.9 54 264-323 126-179 (468)
267 PRK08445 hypothetical protein; 26.1 1.1E+02 0.0023 31.5 4.8 58 273-330 144-205 (348)
268 cd06595 GH31_xylosidase_XylS-l 26.0 2.3E+02 0.0049 28.0 6.9 60 268-327 23-94 (292)
269 cd00945 Aldolase_Class_I Class 26.0 75 0.0016 27.7 3.2 24 268-291 11-34 (201)
270 PRK09549 mtnW 2,3-diketo-5-met 26.0 88 0.0019 33.4 4.3 50 269-331 213-264 (407)
271 TIGR03822 AblA_like_2 lysine-2 25.9 4.5E+02 0.0099 26.5 9.1 110 274-407 188-299 (321)
272 TIGR01949 AroFGH_arch predicte 25.6 69 0.0015 30.9 3.2 43 252-294 18-60 (258)
273 TIGR03455 HisG_C-term ATP phos 25.4 86 0.0019 27.1 3.4 23 267-289 71-93 (100)
274 cd03315 MLE_like Muconate lact 25.2 2E+02 0.0043 27.5 6.2 49 264-325 187-236 (265)
275 cd00331 IGPS Indole-3-glycerol 25.1 1.9E+02 0.004 26.9 5.8 43 275-327 86-128 (217)
276 TIGR03234 OH-pyruv-isom hydrox 25.0 1.5E+02 0.0033 27.6 5.3 53 270-324 84-140 (254)
277 cd06602 GH31_MGAM_SI_GAA This 25.0 6.9E+02 0.015 25.4 10.2 62 266-331 20-90 (339)
278 PLN02784 alpha-amylase 24.9 1.5E+02 0.0033 34.9 6.1 63 269-334 520-596 (894)
279 cd02801 DUS_like_FMN Dihydrour 24.8 1.3E+02 0.0029 27.6 4.8 52 267-319 64-121 (231)
280 PRK10658 putative alpha-glucos 24.8 2.7E+02 0.0058 31.4 7.9 86 268-367 281-373 (665)
281 cd07381 MPP_CapA CapA and rela 24.7 2.1E+02 0.0046 26.8 6.1 58 267-331 159-216 (239)
282 cd08612 GDPD_GDE4 Glycerophosp 24.7 65 0.0014 31.7 2.9 19 276-294 47-65 (300)
283 PF14258 DUF4350: Domain of un 24.6 83 0.0018 24.3 2.9 23 305-327 3-25 (70)
284 cd08558 PI-PLCc_eukaryota Cata 24.5 64 0.0014 32.0 2.8 64 263-329 23-95 (226)
285 cd02871 GH18_chitinase_D-like 24.5 1.2E+02 0.0026 30.2 4.7 46 244-289 234-292 (312)
286 TIGR00322 diphth2_R diphthamid 24.5 1.7E+02 0.0038 30.0 5.9 36 293-328 235-270 (332)
287 cd06413 GH25_muramidase_1 Unch 24.4 2.6E+02 0.0055 25.8 6.5 50 276-332 17-66 (191)
288 PRK13762 tRNA-modifying enzyme 24.4 2.7E+02 0.0058 28.4 7.2 75 268-350 206-282 (322)
289 cd00950 DHDPS Dihydrodipicolin 24.3 2.5E+02 0.0054 27.1 6.7 51 263-320 15-66 (284)
290 cd02875 GH18_chitobiase Chitob 24.3 1.6E+02 0.0035 30.1 5.6 44 270-317 99-142 (358)
291 COG3867 Arabinogalactan endo-1 24.3 2E+02 0.0043 30.8 6.3 58 272-331 65-126 (403)
292 TIGR02666 moaA molybdenum cofa 24.2 3.5E+02 0.0076 26.8 7.8 58 268-333 137-194 (334)
293 KOG1461 Translation initiation 24.1 3.8E+02 0.0082 30.9 8.8 104 252-378 47-183 (673)
294 cd08041 OBF_kDNA_ligase_like T 24.1 53 0.0012 26.4 1.8 22 409-430 52-74 (77)
295 PLN02564 6-phosphofructokinase 24.0 3.3E+02 0.0073 30.0 8.2 101 271-422 164-264 (484)
296 PF13460 NAD_binding_10: NADH( 24.0 2.4E+02 0.0052 24.4 6.0 56 265-333 47-102 (183)
297 TIGR01212 radical SAM protein, 23.9 4.5E+02 0.0097 26.3 8.5 77 248-331 136-217 (302)
298 cd08628 PI-PLCc_gamma2 Catalyt 23.9 63 0.0014 32.6 2.6 66 264-332 24-100 (254)
299 cd08579 GDPD_memb_like Glycero 23.7 75 0.0016 29.4 2.9 20 275-294 18-37 (220)
300 cd07944 DRE_TIM_HOA_like 4-hyd 23.7 2.1E+02 0.0046 28.1 6.1 123 274-423 86-221 (266)
301 PLN02228 Phosphoinositide phos 23.7 1.5E+02 0.0032 33.1 5.6 67 264-332 128-205 (567)
302 PF05908 DUF867: Protein of un 23.4 67 0.0015 31.2 2.6 23 309-335 81-103 (194)
303 cd00530 PTE Phosphotriesterase 23.4 1.9E+02 0.0041 27.6 5.7 58 266-333 28-85 (293)
304 PRK10426 alpha-glucosidase; Pr 23.3 3.6E+02 0.0077 30.2 8.4 86 269-366 220-316 (635)
305 cd03325 D-galactonate_dehydrat 23.3 1.1E+02 0.0025 30.7 4.3 55 266-337 236-291 (352)
306 cd08556 GDPD Glycerophosphodie 23.3 65 0.0014 28.0 2.3 18 273-290 171-188 (189)
307 cd08601 GDPD_SaGlpQ_like Glyce 23.3 75 0.0016 30.1 2.9 20 275-294 20-39 (256)
308 cd08210 RLP_RrRLP Ribulose bis 23.3 1.6E+02 0.0036 30.7 5.6 26 269-294 204-229 (364)
309 TIGR00676 fadh2 5,10-methylene 23.1 1.8E+02 0.0039 28.6 5.5 68 275-353 149-221 (272)
310 cd08564 GDPD_GsGDE_like Glycer 23.1 77 0.0017 30.4 3.0 15 280-294 30-44 (265)
311 PF03799 FtsQ: Cell division p 23.0 1.8E+02 0.0038 23.5 4.7 58 357-417 9-67 (117)
312 PRK13655 phosphoenolpyruvate c 23.0 76 0.0017 34.8 3.2 54 305-364 216-274 (494)
313 cd04740 DHOD_1B_like Dihydroor 23.0 2.6E+02 0.0057 27.1 6.6 27 267-293 99-125 (296)
314 cd08555 PI-PLCc_GDPD_SF Cataly 22.9 82 0.0018 28.5 3.0 58 276-333 19-90 (179)
315 cd07947 DRE_TIM_Re_CS Clostrid 22.9 2.5E+02 0.0054 28.1 6.6 84 275-369 79-178 (279)
316 PLN02952 phosphoinositide phos 22.8 1.6E+02 0.0034 33.2 5.6 64 264-329 145-217 (599)
317 cd06603 GH31_GANC_GANAB_alpha 22.7 2E+02 0.0044 28.9 6.0 59 266-328 20-85 (339)
318 PRK05926 hypothetical protein; 22.7 97 0.0021 32.2 3.8 55 272-329 168-229 (370)
319 PF14307 Glyco_tran_WbsX: Glyc 22.7 1.1E+02 0.0023 31.1 4.0 29 266-294 54-82 (345)
320 cd08567 GDPD_SpGDE_like Glycer 22.7 82 0.0018 29.5 3.0 21 274-294 19-39 (263)
321 PRK08445 hypothetical protein; 22.5 2.6E+02 0.0057 28.7 6.8 51 268-325 74-124 (348)
322 PRK13347 coproporphyrinogen II 22.5 3.3E+02 0.0072 28.6 7.7 59 265-329 183-241 (453)
323 TIGR02351 thiH thiazole biosyn 22.4 1.8E+02 0.0038 29.9 5.5 45 273-322 162-216 (366)
324 PF00701 DHDPS: Dihydrodipicol 22.4 3E+02 0.0065 26.7 6.8 61 261-327 14-75 (289)
325 cd08607 GDPD_GDE5 Glycerophosp 22.4 68 0.0015 31.0 2.5 18 275-292 273-290 (290)
326 PF03154 Atrophin-1: Atrophin- 22.2 98 0.0021 36.7 4.0 58 64-121 713-802 (982)
327 PLN03231 putative alpha-galact 22.2 85 0.0018 33.0 3.3 49 277-325 29-104 (357)
328 PF00010 HLH: Helix-loop-helix 22.1 2.7E+02 0.0058 20.7 5.1 44 74-117 2-48 (55)
329 PF01408 GFO_IDH_MocA: Oxidore 21.8 1.2E+02 0.0026 24.7 3.5 29 295-325 90-118 (120)
330 PRK09240 thiH thiamine biosynt 21.7 2.4E+02 0.0053 29.0 6.4 52 273-329 163-225 (371)
331 PRK07428 nicotinate-nucleotide 21.7 2E+02 0.0044 29.2 5.7 33 279-323 212-244 (288)
332 TIGR00259 thylakoid_BtpA membr 21.6 72 0.0016 32.0 2.6 25 270-294 28-52 (257)
333 TIGR03128 RuMP_HxlA 3-hexulose 21.6 2.1E+02 0.0045 26.1 5.3 42 275-327 68-109 (206)
334 TIGR01917 gly_red_sel_B glycin 21.5 94 0.002 33.8 3.5 10 251-260 283-292 (431)
335 TIGR03699 mena_SCO4550 menaqui 21.5 2.2E+02 0.0047 28.4 5.9 51 267-324 72-122 (340)
336 PRK07226 fructose-bisphosphate 21.5 1.6E+02 0.0035 28.7 4.9 54 270-327 93-146 (267)
337 PRK14706 glycogen branching en 21.5 2.5E+02 0.0055 31.4 6.8 62 264-330 161-240 (639)
338 COG1060 ThiH Thiamine biosynth 21.2 1.5E+02 0.0032 31.2 4.7 59 271-329 159-221 (370)
339 cd02872 GH18_chitolectin_chito 21.2 1.4E+02 0.0031 29.7 4.5 47 271-319 100-146 (362)
340 PLN02219 probable galactinol-- 21.2 93 0.002 36.0 3.5 124 266-391 358-543 (775)
341 TIGR01163 rpe ribulose-phospha 21.1 3.3E+02 0.0072 24.5 6.5 24 267-290 8-31 (210)
342 cd07382 MPP_DR1281 Deinococcus 21.1 2.1E+02 0.0046 28.4 5.6 51 269-333 127-177 (255)
343 cd08573 GDPD_GDE1 Glycerophosp 21.0 88 0.0019 30.3 2.9 20 275-294 18-37 (258)
344 PRK09997 hydroxypyruvate isome 21.0 1.6E+02 0.0035 27.8 4.6 50 270-322 85-139 (258)
345 cd08565 GDPD_pAtGDE_like Glyce 21.0 90 0.0019 29.7 3.0 20 275-294 18-37 (235)
346 TIGR03600 phage_DnaB phage rep 20.8 7.2E+02 0.016 25.6 9.5 96 267-367 287-392 (421)
347 TIGR01361 DAHP_synth_Bsub phos 20.7 1.5E+02 0.0032 29.3 4.5 65 260-325 29-94 (260)
348 TIGR03551 F420_cofH 7,8-dideme 20.7 3.4E+02 0.0074 27.4 7.1 52 267-325 70-121 (343)
349 TIGR00542 hxl6Piso_put hexulos 20.7 1.8E+02 0.0039 27.7 4.9 51 270-323 94-149 (279)
350 PF13204 DUF4038: Protein of u 20.5 1.1E+02 0.0025 30.3 3.7 51 291-350 148-198 (289)
351 PRK09989 hypothetical protein; 20.5 2E+02 0.0044 27.1 5.2 53 270-324 85-141 (258)
352 TIGR03191 benz_CoA_bzdO benzoy 20.5 2.3E+02 0.005 30.1 6.1 54 267-330 345-398 (430)
353 COG1856 Uncharacterized homolo 20.5 2.2E+02 0.0047 29.3 5.6 55 273-328 100-157 (275)
354 cd06599 GH31_glycosidase_Aec37 20.5 2.7E+02 0.0059 27.9 6.3 58 269-327 28-93 (317)
355 PRK09856 fructoselysine 3-epim 20.5 1.5E+02 0.0033 27.9 4.3 55 269-323 89-145 (275)
356 PF03740 PdxJ: Pyridoxal phosp 20.4 62 0.0013 32.5 1.8 53 273-325 135-190 (239)
357 PTZ00286 6-phospho-1-fructokin 20.3 5.6E+02 0.012 27.9 8.9 103 271-424 164-266 (459)
358 cd08575 GDPD_GDE4_like Glycero 20.3 79 0.0017 30.5 2.5 18 273-290 242-259 (264)
359 COG4702 Uncharacterized conser 20.3 71 0.0015 30.8 2.1 23 102-124 139-161 (168)
360 PRK05799 coproporphyrinogen II 20.2 4.7E+02 0.01 26.4 7.9 69 252-326 112-185 (374)
361 cd06168 LSm9 The eukaryotic Sm 20.1 38 0.00083 27.9 0.3 11 440-450 24-34 (75)
No 1
>PLN02705 beta-amylase
Probab=100.00 E-value=9.4e-180 Score=1386.79 Aligned_cols=410 Identities=77% Similarity=1.236 Sum_probs=397.3
Q ss_pred CCCCCCCCCCcchhhhhHHHHHHhhcCC----CCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCC
Q 012883 27 TQSHSRRPRGFAATAAAAAAAAAANNNS----NSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 102 (454)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r~~erE~~k~RER~Rraia~ki~aGlr~~g~~~ 102 (454)
+|||+|||||||+||||+++|+..++++ .++|+|||+|+++|+|++||||||+|||||||||+|||||||+||||+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~rer~rrai~~ki~aglr~~g~~~ 113 (681)
T PLN02705 34 NQPQSRRPRGFAATAAAAAIAPTENDVNNGNISSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 113 (681)
T ss_pred CCCccCCCcchhhhhcccccCCCcccccCccccCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4589999999999999999888766655 556677777888999999999999999999999999999999999999
Q ss_pred CCcccChhHHHHHHHHHhCceEcCCCCceeccccccCccchhhhhhhhhhccccccccccccCccc---ccccccccccc
Q 012883 103 LPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS---VKNCSVKASVE 179 (454)
Q Consensus 103 lp~~~d~n~vl~al~~eagw~v~~dgt~yr~~~~~~~~~~~~q~~~~~~~~~~~~f~~~~~~~p~~---~~~~~~~~~~~ 179 (454)
||+|||+||||||||+||||+||+|||||| . .++|+++|+|+|+|||||++ |++|+.+...+
T Consensus 114 lp~~~d~n~vl~al~~eagw~v~~dg~~yr-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (681)
T PLN02705 114 LPARADMNDVLAALAREAGWTVEADGTTYR-----------Q----SPQPSHVGSFPVRSVESPLSSSTLKNCAKAAIES 178 (681)
T ss_pred CCcccchHHHHHHHHHhcCcEEcCCCCccc-----------C----CCCCcccccccccCccCcchhhhHHHhhhhhhcc
Confidence 999999999999999999999999999999 4 77889999999999999997 99999999999
Q ss_pred cCCcccccccCCCCCCcccccccccC-CCCCCCccCCCCcccchhhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeecc
Q 012883 180 CQPSVLRIDESLSPASFDSVVIPERD-SRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANH 258 (454)
Q Consensus 180 ~~~s~~~~d~~~s~~s~~s~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~VpVyVMLPLd 258 (454)
||+|+|||||||||.|||||||+|++ +++++|+ +++|| +|++|++++|++++++++.++.+++.+++||||||||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd 256 (681)
T PLN02705 179 QQHSVLRIDESLSPVSLDSVVIAESDHPGNGRYT-STSPI-TSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVG 256 (681)
T ss_pred cccchhccccccCcccccceeeeccccccccccc-ccCcc-ccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecc
Confidence 99999999999999999999999999 8999999 99999 999999999999999999999999999999999999999
Q ss_pred eecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCC
Q 012883 259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (454)
Q Consensus 259 vV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD 338 (454)
+|+.+|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++|||||||||||||||||||
T Consensus 257 ~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 257 IINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred eeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecc
Q 012883 339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL 418 (454)
Q Consensus 339 ~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGL 418 (454)
+|+||||+||+++|++|||||||||+|+||+||||||+|++|||+||||||||+|||+|||++|++||++++|+||+|||
T Consensus 337 ~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGL 416 (681)
T PLN02705 337 NVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGL 416 (681)
T ss_pred cccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred cCcccccCCCCCCCCCCcCCccceecccCchhhcC
Q 012883 419 GPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES 453 (454)
Q Consensus 419 GPaGELRYPSYp~~~GW~yPGiGEFQCYDkyml~s 453 (454)
||||||||||||++.||+||||||||||||||+++
T Consensus 417 GP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~ 451 (681)
T PLN02705 417 GASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQN 451 (681)
T ss_pred CCCccccCCCCcccCCCCCCCcceeeeccHHHHHH
Confidence 99999999999999999999999999999999975
No 2
>PLN02905 beta-amylase
Probab=100.00 E-value=3.8e-158 Score=1228.20 Aligned_cols=388 Identities=52% Similarity=0.900 Sum_probs=363.1
Q ss_pred CCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCCCCcccChhHHHHHHHHHhCceEcCCCCceecc
Q 012883 55 NSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLS 134 (454)
Q Consensus 55 ~~~~~~~~~~~~~~~r~~erE~~k~RER~Rraia~ki~aGlr~~g~~~lp~~~d~n~vl~al~~eagw~v~~dgt~yr~~ 134 (454)
+++|+++||+.++..-.+||||||+|||||||||+|||||||+||||+||+|||+||||||||+||||+||+||||||+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~~l~~eag~~v~~dg~~y~~~ 147 (702)
T PLN02905 68 EQVGTPGGGGSRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSR 147 (702)
T ss_pred HhcCCCCCCccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccchHHHHHHHHHhcCcEEcCCCCccccc
Confidence 68888887776443333699999999999999999999999999999999999999999999999999999999999964
Q ss_pred ccccCccchhhhhhhhhhccccccccccccCccc--------------ccccccccccccCCcccccccCCCCCCccccc
Q 012883 135 NQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS--------------VKNCSVKASVECQPSVLRIDESLSPASFDSVV 200 (454)
Q Consensus 135 ~~~~~~~~~~q~~~~~~~~~~~~f~~~~~~~p~~--------------~~~~~~~~~~~~~~s~~~~d~~~s~~s~~s~~ 200 (454)
.++.-....+ ++.+...++|+++|+|||++ +++|+.++++-+|+|+ +|+||+|+|+||||
T Consensus 148 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~d~~~~~~~~~~~~ 221 (702)
T PLN02905 148 SQGTRPAGGT----SAVAATSSSSHLVSQQTPPPSLRGVSSGYRSSVEYNACRMKGVFVPASSP--YDVSPSQSSELVVV 221 (702)
T ss_pred CCCCCCCCCc----ccccccccccccccccCCcchhcccccccccccccchhhhccccccCCCc--cccccCCCCcceeE
Confidence 3332211111 33345568899999999983 9999999999999999 79999999999999
Q ss_pred ccccCCCCCCCccCCCCcccchhhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeecceecCCccccCHHHHHHHHHHHH
Q 012883 201 IPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMK 280 (454)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK 280 (454)
++|++++|++|. ||.+|++|++++|++ |+++..++.+++.+++||||||||||+|+.+|+|+|+++|+++|++||
T Consensus 222 ~~~~~~~~~~~~----~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK 296 (702)
T PLN02905 222 MGDRGSQNENHG----LIGGSVDAINSKQIL-DIPPKLTERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILK 296 (702)
T ss_pred eecccccccccC----CccCcccccchhhhh-hhhcccccccccCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHH
Confidence 999999999994 777999999999888 999999999999999999999999999999999999999999999999
Q ss_pred hcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHhhhcCCCCeEE
Q 012883 281 ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFF 360 (454)
Q Consensus 281 ~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfy 360 (454)
++|||||||||||||||+++|++|||+||++||+|||++|||||||||||||||||||+|+||||+||++++++||||||
T Consensus 297 ~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDiff 376 (702)
T PLN02905 297 SINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFF 376 (702)
T ss_pred HcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecccCcccccCCCCCCCCCCcCCcc
Q 012883 361 TDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGI 440 (454)
Q Consensus 361 TDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGLGPaGELRYPSYp~~~GW~yPGi 440 (454)
|||+|+||+||||||+|++|||+||||||||+|||+|||++|++||++++|+||+|||||||||||||||++.||+||||
T Consensus 377 tDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGi 456 (702)
T PLN02905 377 TDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGI 456 (702)
T ss_pred ecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ceecccCchhhcC
Q 012883 441 GEFQIFTAKSTES 453 (454)
Q Consensus 441 GEFQCYDkyml~s 453 (454)
||||||||||+++
T Consensus 457 GEFQCYDKymla~ 469 (702)
T PLN02905 457 GEFQCYDQYLLKS 469 (702)
T ss_pred ceeeeccHHHHHH
Confidence 9999999999975
No 3
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=7e-106 Score=828.71 Aligned_cols=212 Identities=38% Similarity=0.760 Sum_probs=206.6
Q ss_pred CCCCCCCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcC
Q 012883 241 DDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (454)
Q Consensus 241 ~~~~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~G 320 (454)
......++||||||||||+|+++|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++|
T Consensus 98 ~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~G 177 (573)
T PLN00197 98 GTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHG 177 (573)
T ss_pred cccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcC
Confidence 44445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHH
Q 012883 321 LKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRT 400 (454)
Q Consensus 321 LKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~ 400 (454)
||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||||||+|||+|||+
T Consensus 178 LKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~ 257 (573)
T PLN00197 178 LKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRD 257 (573)
T ss_pred CeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccceeEEEecccCcccccCCCCCCCCC-CcCCccceecccCchhhcC
Q 012883 401 EFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQIFTAKSTES 453 (454)
Q Consensus 401 ~F~d~l~~g~I~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkyml~s 453 (454)
+|++||+ ++|+||+|||||||||||||||+++| |+||||||||||||||+++
T Consensus 258 ~F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~ 310 (573)
T PLN00197 258 NFKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSS 310 (573)
T ss_pred HHHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHH
Confidence 9999998 59999999999999999999999888 9999999999999999975
No 4
>PLN02803 beta-amylase
Probab=100.00 E-value=1.4e-105 Score=824.05 Aligned_cols=209 Identities=44% Similarity=0.852 Sum_probs=205.4
Q ss_pred CCCCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 244 TGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 244 ~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
...++||||||||||+|+.+|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHh
Q 012883 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFD 403 (454)
Q Consensus 324 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~ 403 (454)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccceeEEEecccCcccccCCCCCCCCC-CcCCccceecccCchhhcC
Q 012883 404 DLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQIFTAKSTES 453 (454)
Q Consensus 404 d~l~~g~I~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkyml~s 453 (454)
+|++ ++|+||+|||||||||||||||+++| |+||||||||||||||+++
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~ 290 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRAS 290 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHH
Confidence 9998 79999999999999999999999888 9999999999999999975
No 5
>PLN02801 beta-amylase
Probab=100.00 E-value=2e-105 Score=819.57 Aligned_cols=209 Identities=45% Similarity=0.910 Sum_probs=206.0
Q ss_pred CCCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 245 GTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 245 ~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
..++||||||||||+|+.+|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++|||||
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred cCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhh
Q 012883 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (454)
Q Consensus 325 vVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d 404 (454)
||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++
T Consensus 92 ~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~ 171 (517)
T PLN02801 92 AIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD 171 (517)
T ss_pred EEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceeEEEecccCcccccCCCCCCCCCCcCCccceecccCchhhcC
Q 012883 405 LFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES 453 (454)
Q Consensus 405 ~l~~g~I~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkyml~s 453 (454)
|+++++|+||+|||||||||||||||++.||+||||||||||||||+++
T Consensus 172 ~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~ 220 (517)
T PLN02801 172 FLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKAD 220 (517)
T ss_pred hccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHH
Confidence 9988899999999999999999999999999999999999999999975
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=1.7e-103 Score=805.94 Aligned_cols=211 Identities=38% Similarity=0.725 Sum_probs=204.3
Q ss_pred CCCCCCCccEEEEeecceecCCc----cccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHH
Q 012883 242 DFTGTPYIPVYVMLANHVINNFC----QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR 317 (454)
Q Consensus 242 ~~~~~~~VpVyVMLPLdvV~~~~----~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir 317 (454)
.....++||||||||||+|+.++ +|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||
T Consensus 85 ~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr 164 (531)
T PLN02161 85 VSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLIS 164 (531)
T ss_pred ccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHH
Confidence 34457899999999999999663 79999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEEEeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHH
Q 012883 318 EFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRS 397 (454)
Q Consensus 318 ~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrS 397 (454)
++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|
T Consensus 165 ~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~S 244 (531)
T PLN02161 165 EAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLS 244 (531)
T ss_pred HcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccceeEEEecccCcccccCCCCCCCCC-CcCCccceecccCchhhcC
Q 012883 398 FRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQIFTAKSTES 453 (454)
Q Consensus 398 Fr~~F~d~l~~g~I~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkyml~s 453 (454)
||++|++|++ ++|+||+|||||||||||||||+++| |+|||||||||||||||++
T Consensus 245 Fr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~ 300 (531)
T PLN02161 245 FSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMED 300 (531)
T ss_pred HHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHH
Confidence 9999999997 69999999999999999999999877 9999999999999999975
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=2.1e-93 Score=716.87 Aligned_cols=189 Identities=52% Similarity=0.992 Sum_probs=160.4
Q ss_pred EEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 252 YVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 252 yVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
|||||||+|+++++++ +|+++|++||++|||||||||||||||+++|++|||++|++||+|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988775 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcccce
Q 012883 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLI 411 (454)
Q Consensus 332 CGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I 411 (454)
|||||||+|+||||+||++++++| |||||||+|+||+|||| |||+||| ||+|.|||+|||++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 599
Q ss_pred eEEEecccCcccccCCCCCCCCCCcCCccceecccCchhhcC
Q 012883 412 CAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES 453 (454)
Q Consensus 412 ~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkyml~s 453 (454)
+||+|||||||||||||||+++||+||||||||||||||+++
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~ 189 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLAS 189 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHH
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHH
Confidence 999999999999999999999999999999999999999975
No 8
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=100.00 E-value=2.2e-43 Score=316.47 Aligned_cols=131 Identities=38% Similarity=0.540 Sum_probs=116.0
Q ss_pred CCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCCCCcccChhHHHHHHHHHhCceEcCCCCceeccccccCc
Q 012883 61 ASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSH 140 (454)
Q Consensus 61 ~~~~~~~~~r~~erE~~k~RER~Rraia~ki~aGlr~~g~~~lp~~~d~n~vl~al~~eagw~v~~dgt~yr~~~~~~~~ 140 (454)
++++|.++|| ||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+||||||+ +.
T Consensus 1 ~~~~r~pt~k--ErEnnk~RERrRRAIaakIfaGLR~~Gny~Lp~~aD~NeVLkALc~eAGw~Ve~DGTtyr~-----~~ 73 (150)
T PF05687_consen 1 GSGGRRPTWK--ERENNKRRERRRRAIAAKIFAGLRAHGNYKLPKHADNNEVLKALCREAGWTVEPDGTTYRK-----GC 73 (150)
T ss_pred CCCcccccHh--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHhCCEEEccCCCeecc-----CC
Confidence 4567788888 9999999999999999999999999999999999999999999999999999999999992 11
Q ss_pred cchhhhhhhhhhccccccccccccCccc--ccccccccccccCCcccccccCCCCCCccccccccc
Q 012883 141 HHLHQQMAAAAATTTAAFPVRSVESPLS--VKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER 204 (454)
Q Consensus 141 ~~~~q~~~~~~~~~~~~f~~~~~~~p~~--~~~~~~~~~~~~~~s~~~~d~~~s~~s~~s~~~~~~ 204 (454)
.+ .......|.+...+.+|+.. +.+|+...++.++.+.++.+...||.++|++++++.
T Consensus 74 ~~------~~~~~~~g~s~~~sp~ss~~~~~~ss~~~sp~~s~~~s~~ss~~pSp~~~d~~~~~~~ 133 (150)
T PF05687_consen 74 KP------PEPMEIVGSSASASPCSSYQLSPNSSAFPSPVPSYQPSPSSSSFPSPSSLDSINNSSS 133 (150)
T ss_pred CC------CccccccccCCCCCCcCCCcCCccccCcCCcccccCCCcCCCCCCCCccccccccccc
Confidence 11 13446677888888888764 889999999999999999999999999999999776
No 9
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.80 E-value=2.3e-08 Score=98.46 Aligned_cols=132 Identities=17% Similarity=0.320 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhcCcceEEE-eeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccch
Q 012883 268 DPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmV-DVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~ 346 (454)
+.+.++..|+.+|++|+.-|.| .+.|..+|+ .+++|||+.+.++++++++.||||. |.+= .-..|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~vi--L~~~----------~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKVI--LGTP----------TAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EEE--EEEC----------TTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeEE--EEec----------cccccc
Confidence 3478899999999999999996 899999998 5999999999999999999999964 4432 125899
Q ss_pred HHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhh-hhcccceeEEEecccCccc
Q 012883 347 WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD-LFVAGLICAVEIGLGPSGE 423 (454)
Q Consensus 347 WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d-~l~~g~I~eI~VGLGPaGE 423 (454)
|+. ++.||+...|..|.+. +.+.-.-.- .--..|.++++.|..++.. |-+...|..++|.=.|.+.
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~----~~g~~~~~~----~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRR----GFGSRQHYC----PNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBE----ECCCSTT-H----CCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred chh---hhcccccccCCCCCcC----ccCCccccc----hhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 997 4789999999999873 222211111 1245678888888777754 3334468888886554444
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.12 E-value=1.3e-05 Score=79.37 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHH---HHHHHHHHHcCCceEEEEEe--eccCCCCCCCcccc
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGY---RELFNIIREFNLKVQVVMAF--HEYGANDSGDAWIS 343 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY---~~Lf~mir~~GLKlqvVMSF--HqCGGNVGD~~~IP 343 (454)
++..+..|+++|++|+..|.+-|-|...|. .+++|||++- ..+++||+++||+| ||.+ -.|+ .-.+=-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~a----E~~~gG 95 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICA----EWDNGG 95 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---T----TBGGGG
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceecc----cccchh
Confidence 677889999999999999999999999998 5999999984 58899999999995 5554 3444 122224
Q ss_pred cchHHHhh
Q 012883 344 LPQWVMEI 351 (454)
Q Consensus 344 LP~WV~e~ 351 (454)
||.|+.+.
T Consensus 96 ~P~Wl~~~ 103 (319)
T PF01301_consen 96 LPAWLLRK 103 (319)
T ss_dssp --GGGGGS
T ss_pred hhhhhhcc
Confidence 99999853
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=97.20 E-value=0.0022 Score=71.81 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHH---HHHHHHcCCceEEEEEeeccCCC-CCCCcccc
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYREL---FNIIREFNLKVQVVMAFHEYGAN-DSGDAWIS 343 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~L---f~mir~~GLKlqvVMSFHqCGGN-VGD~~~IP 343 (454)
.++.-+.-|+++|++|.+.|.+=|-|.+-|. .|++|||+|=++| +++|++.||.+.+=..=.-|+-= -| -
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~G-----G 130 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFG-----G 130 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCC-----C
Confidence 4678888999999999999999999999998 5999999997765 67889999998776666666421 11 3
Q ss_pred cchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhc--------ccceeEEE
Q 012883 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV--------AGLICAVE 415 (454)
Q Consensus 344 LP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~--------~g~I~eI~ 415 (454)
||.|+++ +|+|.+.. -=+.|.+.|+.|-+..-+.+. .|-|.-+|
T Consensus 131 lP~WL~~----~~~i~~Rs------------------------~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 131 FPVWLKY----VPGIEFRT------------------------DNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred Cchhhhc----CCCccccc------------------------CCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 9999974 35654432 224566666666555555441 35677777
Q ss_pred e
Q 012883 416 I 416 (454)
Q Consensus 416 V 416 (454)
|
T Consensus 183 I 183 (840)
T PLN03059 183 I 183 (840)
T ss_pred e
Confidence 7
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.04 E-value=0.0026 Score=57.98 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeee-cCCCc---cccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVE-GWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE-~~~P~---qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
...++.|+.||++|+.-|-+.|.|...+ ...+. .--|..++++++.+++.||+| ||.+|.
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~ 84 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHN 84 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEecc
Confidence 3788999999999999999999995444 33232 345777889999999999997 889995
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=96.78 E-value=0.0053 Score=63.18 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=86.4
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
..+..-.+..|+.||++|++.+-+.|=|.-+++.+++++| +..|+++++.+++.||+..|.|. | .
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------f 117 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------W 117 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------C
Confidence 4567888999999999999999999999999998777887 78999999999999999888886 4 2
Q ss_pred ccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcc-cceeEEEe
Q 012883 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (454)
Q Consensus 343 PLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~-g~I~eI~V 416 (454)
-||.|+.+ +.|-.|.| -++.|.+|.+-...+|.+...- -||.|..+
T Consensus 118 d~P~~l~~------------~gGw~~~~----------------~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 118 DLPQALED------------RGGWLNRD----------------TAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CccHHHHh------------cCCCCChH----------------HHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 58999863 23433332 2567888888888888863220 25666654
No 14
>PLN02705 beta-amylase
Probab=96.33 E-value=0.0062 Score=66.64 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCchhHhhHHHHHH-HHHHHhhhhcccceeEEEecccCcccccCCCCCCCCC
Q 012883 384 GRTGIEVYFDFMRS-FRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG 434 (454)
Q Consensus 384 GRTpiq~Y~DFMrS-Fr~~F~d~l~~g~I~eI~VGLGPaGELRYPSYp~~~G 434 (454)
|+=-.|||..||.+ |+.+-..- + .-+=|.||..-=.|=+-|+..|
T Consensus 437 GiGEFQCYDkymla~Lk~aA~a~-G-----hpeWG~gP~dAg~YN~~P~~tg 482 (681)
T PLN02705 437 GIGEFQCYDKYSQQNLRKAAKSR-G-----HSFWARGPDNAGQYNSRPHETG 482 (681)
T ss_pred CcceeeeccHHHHHHHHHHHHHh-C-----cHhhccCCCCccccCCCCCCCC
Confidence 55568999999975 44443322 2 4466778988888877776554
No 15
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.023 Score=62.67 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEE-eeeeeeeecCCCccccchHHHHH-HHHHHHcCCceEEEEEeeccCCCCCCCcccccc
Q 012883 268 DPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYREL-FNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmV-DVWWGiVE~~~P~qYdWSgY~~L-f~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP 345 (454)
..+.++..|+.+|++|+.-|.+ .+=|+..|. .-++|||+--++. ++|+.+.||++. |.. |. +=--|
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~vi--l~t----~P-----~g~~P 95 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYVI--LRT----GP-----TGAPP 95 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceEE--Eec----CC-----CCCCc
Confidence 3489999999999999999999 999999998 4899999988888 999999998754 433 11 12369
Q ss_pred hHHHhhhcCCCCeEEecCCCCc
Q 012883 346 QWVMEIGKGNQDIFFTDREGRR 367 (454)
Q Consensus 346 ~WV~e~g~~npDIfyTDrsG~R 367 (454)
.|.. ++.|+|..+|..|.+
T Consensus 96 ~Wl~---~~~PeiL~~~~~~~~ 114 (673)
T COG1874 96 AWLA---KKYPEILAVDENGRV 114 (673)
T ss_pred hHHh---cCChhheEecCCCcc
Confidence 9998 477999999999654
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.44 E-value=0.028 Score=58.00 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=58.8
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCC-Ccccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~-P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~ 341 (454)
.....-.+..|+-||++|++..-+-+-|.-+++.+ .+++| +..|++|++.+++.|++..|.|. |
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H----------- 121 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H----------- 121 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------
Confidence 35678899999999999999999999999999987 66776 99999999999999999888874 4
Q ss_pred cccchHHHhh
Q 012883 342 ISLPQWVMEI 351 (454)
Q Consensus 342 IPLP~WV~e~ 351 (454)
--||.|+.+.
T Consensus 122 ~~~P~~l~~~ 131 (455)
T PF00232_consen 122 FDLPLWLEDY 131 (455)
T ss_dssp S--BHHHHHH
T ss_pred cccccceeec
Confidence 2699999864
No 17
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=95.27 E-value=0.15 Score=49.09 Aligned_cols=107 Identities=18% Similarity=0.345 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHH
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 348 (454)
+...++++..+|+++|.++--|+--.--+|..|. |-+++++++-+++.|.+ ..+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~----~~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGP----VIHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCc----eEEEECC-Cch-----hHHHHH
Confidence 4455667778899999999988732212455555 99999999999998764 4569996 433 344555
Q ss_pred HhhhcCCCCeEEecCCC-----C---ccCceeeeecCcccccCCCchhHhh
Q 012883 349 MEIGKGNQDIFFTDREG-----R---RNTECLSWGVDKERVLNGRTGIEVY 391 (454)
Q Consensus 349 ~e~g~~npDIfyTDrsG-----~---Rn~EcLSlgvD~~pVL~GRTpiq~Y 391 (454)
.+.+ .|++-.|..- . -.+-||-.++|..-+|..-|+-++.
T Consensus 240 ~~~~---~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~ 287 (330)
T cd03465 240 ADLG---ADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIK 287 (330)
T ss_pred HHhC---CCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHH
Confidence 5443 4665555331 1 1135777888876345555775444
No 18
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.93 E-value=0.079 Score=58.42 Aligned_cols=142 Identities=22% Similarity=0.354 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHH---HHcCCceEEEEE-eeccCCCCCCCcccc
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNII---REFNLKVQVVMA-FHEYGANDSGDAWIS 343 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mi---r~~GLKlqvVMS-FHqCGGNVGD~~~IP 343 (454)
-++--..-|+++|+.|.+.|.+=|.|.+-|. .|++|+|||=.+|...| .+.||=+.-=+- |=+--.|-| -
T Consensus 47 ~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~G-----G 120 (649)
T KOG0496|consen 47 TPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFG-----G 120 (649)
T ss_pred ChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCC-----C
Confidence 3555667789999999999999999999998 69999999988887654 456654432221 222233444 4
Q ss_pred cchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccC------CC-----chhHhhHHHHHHHHHHHhhhhccccee
Q 012883 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLN------GR-----TGIEVYFDFMRSFRTEFDDLFVAGLIC 412 (454)
Q Consensus 344 LP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~------GR-----Tpiq~Y~DFMrSFr~~F~d~l~~g~I~ 412 (454)
||.|+. .-|.|.|..-+.-.-.|.=.|+-=-+|..+ |- ---..|-++-+++++....|++...+.
T Consensus 121 ~P~wL~----~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m 196 (649)
T KOG0496|consen 121 LPWWLR----NVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVL 196 (649)
T ss_pred cchhhh----hCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEE
Confidence 887765 448888875554443333334433333211 10 012479999999999999999976666
Q ss_pred EEEeccc
Q 012883 413 AVEIGLG 419 (454)
Q Consensus 413 eI~VGLG 419 (454)
.+..+.|
T Consensus 197 ~~~l~~g 203 (649)
T KOG0496|consen 197 ATSLGTG 203 (649)
T ss_pred EEecCCC
Confidence 6655555
No 19
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.75 E-value=0.092 Score=49.92 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=37.7
Q ss_pred eeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHH
Q 012883 293 WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (454)
Q Consensus 293 WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~ 349 (454)
|+.+|+ .+++|||+...++++.+++.|++++.-..++.+ -.|.|+.
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~ 48 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVF 48 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhh
Confidence 899998 689999999999999999999999754333322 3689986
No 20
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=94.62 E-value=0.13 Score=54.36 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=65.9
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCC----CccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~----P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~ 341 (454)
..+..-.+..++-||++|++..-+-+-|.-+++.+ +++-.+..|++|++.+++.|++..|.|.-|
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~----------- 135 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF----------- 135 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 46678889999999999999999999999998864 578889999999999999999999999766
Q ss_pred cccchHHHhh
Q 012883 342 ISLPQWVMEI 351 (454)
Q Consensus 342 IPLP~WV~e~ 351 (454)
.||.|+.+.
T Consensus 136 -~~P~~l~~~ 144 (474)
T PRK09852 136 -DVPMHLVTE 144 (474)
T ss_pred -CCCHHHHHh
Confidence 699998753
No 21
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.63 E-value=0.85 Score=40.79 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=70.2
Q ss_pred HHHHHHHhcCcceEEEeee--eeee-------ecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccccc
Q 012883 274 QEISHMKALNVDGVIVNCW--WGIV-------EGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVW--WGiV-------E~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPL 344 (454)
+-+..||.+||+.|++.+= ||.. .....-+- .-..++++.+++.|+++.+=++|+-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~--Dllge~v~a~h~~Girv~ay~~~~~------------- 68 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKR--DLLGEQVEACHERGIRVPAYFDFSW------------- 68 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCc--CHHHHHHHHHHHCCCEEEEEEeeec-------------
Confidence 4467889999999999765 6632 11111223 4489999999999999999999981
Q ss_pred chHHHhhhcCCCCeEEecCCCC--ccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhh
Q 012883 345 PQWVMEIGKGNQDIFFTDREGR--RNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (454)
Q Consensus 345 P~WV~e~g~~npDIfyTDrsG~--Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d 404 (454)
-.|+ .+..||=++.|++|+ +..+....+.-..++ + .-|.||+..-..+.-+
T Consensus 69 d~~~---~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~-n-----s~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 69 DEDA---AERHPEWFVRDADGRPMRGERFGYPGWYTCCL-N-----SPYREFLLEQIREILD 121 (132)
T ss_pred ChHH---HHhCCceeeECCCCCCcCCCCcCCCCceecCC-C-----ccHHHHHHHHHHHHHH
Confidence 2233 357899999999998 333444333222222 1 2477888766665543
No 22
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=92.76 E-value=0.29 Score=51.74 Aligned_cols=74 Identities=9% Similarity=0.227 Sum_probs=63.7
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCC----CccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~----P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~ 341 (454)
..+..-.+..++-||++|++..-+-+-|.-+++.+ +++-.+..|++|++.+++.|++..|-|.-+
T Consensus 65 ~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~----------- 133 (477)
T PRK15014 65 VDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF----------- 133 (477)
T ss_pred cCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 35667889999999999999999999999998864 577789999999999999999988777533
Q ss_pred cccchHHHhh
Q 012883 342 ISLPQWVMEI 351 (454)
Q Consensus 342 IPLP~WV~e~ 351 (454)
.||.|+.+.
T Consensus 134 -dlP~~L~~~ 142 (477)
T PRK15014 134 -EMPLHLVQQ 142 (477)
T ss_pred -CCCHHHHHh
Confidence 699999763
No 23
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.13 E-value=3.1 Score=41.67 Aligned_cols=154 Identities=14% Similarity=0.230 Sum_probs=89.8
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeee-------eecCC------Cc-cccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGI-------VEGWN------PQ-KYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGi-------VE~~~------P~-qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
+..++.++.-|..||++|+..|-++||+.- ++..+ ++ .-.|.-...+++.+++.||++|+=|-|-.
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 447899999999999999999999999851 12111 00 11144577889999999999999985432
Q ss_pred cCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHH-hhhhcccc
Q 012883 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEF-DDLFVAGL 410 (454)
Q Consensus 332 CGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F-~d~l~~g~ 410 (454)
-....+.. .---|.|+. ..+++...+...+.-+.=+|.-+ ...=++||.+--.+. ..| -
T Consensus 95 ~~~~~~~~-~~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Y----d 154 (311)
T PF02638_consen 95 NAPDVSHI-LKKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNY----D 154 (311)
T ss_pred CCCchhhh-hhcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcC----C
Confidence 22222211 112377764 24566444444433333344443 345567777666665 344 2
Q ss_pred eeEEEecccCcccccCCCCCCCCCCcCCccceeccc
Q 012883 411 ICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIF 446 (454)
Q Consensus 411 I~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCY 446 (454)
|..|.+= --|||.. ..|-.++-+-.|+-|
T Consensus 155 vDGIhlD-----dy~yp~~--~~g~~~~~~~~y~~~ 183 (311)
T PF02638_consen 155 VDGIHLD-----DYFYPPP--SFGYDFPDVAAYEKY 183 (311)
T ss_pred CCeEEec-----ccccccc--cCCCCCccHHHHHHh
Confidence 6777654 3456532 233344555555544
No 24
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=90.16 E-value=0.71 Score=48.63 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=63.2
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
..+....+..++-||++|+..--.=+-|.-+++.+++++ -...|++|++.+++.|++-.|.|. | .
T Consensus 49 ~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 116 (467)
T TIGR01233 49 SDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H-----------F 116 (467)
T ss_pred CchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------C
Confidence 467888999999999999999999999999999877665 367899999999999999766664 4 3
Q ss_pred ccchHHHhh
Q 012883 343 SLPQWVMEI 351 (454)
Q Consensus 343 PLP~WV~e~ 351 (454)
-||.|+.+.
T Consensus 117 dlP~~L~~~ 125 (467)
T TIGR01233 117 DTPEALHSN 125 (467)
T ss_pred CCcHHHHHc
Confidence 699999653
No 25
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=90.08 E-value=0.53 Score=46.18 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeecCCCc---cccchHHHHHHHHHHHcCCceEEEEEeeccCC
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~---qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGG 334 (454)
+...++++.++|+|+|.+.--|+-..--+|. +|-|-+++++++-+++.|.. ++ +|-||.
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~--~i--lH~CG~ 243 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGI--TV--LHICGF 243 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCc--eE--EEECCC
Confidence 3455667788999999888778632223455 45599999999999988732 33 699974
No 26
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=89.47 E-value=0.81 Score=48.11 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=63.2
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCc---cccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~---qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
..+..-.+..++-||++|++..-.-+-|.-+++.+.+ +=-+..|++|++.+++.|++-.|.|. | .
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 117 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H-----------F 117 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------C
Confidence 4677889999999999999999999999999998654 44577899999999999998877774 4 3
Q ss_pred ccchHHHhh
Q 012883 343 SLPQWVMEI 351 (454)
Q Consensus 343 PLP~WV~e~ 351 (454)
.||.|+.+.
T Consensus 118 dlP~~L~~~ 126 (469)
T PRK13511 118 DTPEALHSN 126 (469)
T ss_pred CCcHHHHHc
Confidence 699999753
No 27
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=88.89 E-value=0.77 Score=43.77 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeec--CCCc---cccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccccc
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEG--WNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~--~~P~---qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPL 344 (454)
+.+...++++.++|+++|.++-=|+-... -+|. +|-|.+|+++++.+++.|.++ ..|-||+. . ++
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~----~lH~cg~~---~---~~ 213 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI----VHHSCYDA---A---DL 213 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce----EEEECCCH---H---HH
Confidence 44566777888999999998865553221 1333 555999999999888777542 35999964 1 22
Q ss_pred chHHHhhhcCCCCeEEecCCC-C--------ccCceeeeecCcccccCCCchhHhhHHHHHHHHHHH
Q 012883 345 PQWVMEIGKGNQDIFFTDREG-R--------RNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEF 402 (454)
Q Consensus 345 P~WV~e~g~~npDIfyTDrsG-~--------Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F 402 (454)
=.++.+. ..|++=-|..- . .++=+|.-++|.. ++ ..|+ |.=.+..+.--+.+
T Consensus 214 ~~~l~~~---~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~-~~-~~~~-e~i~~~v~~~l~~~ 274 (306)
T cd00465 214 LEEMIQL---GVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPG-YL-PATD-EECIAKVEELVERL 274 (306)
T ss_pred HHHHHHh---CcceEecccccCCHHHHHHHhCCCEEEECCCCcc-cc-CCCH-HHHHHHHHHHHHHh
Confidence 2233332 23433222210 0 0124677888876 33 4566 44444444444443
No 28
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=88.68 E-value=6.2 Score=38.28 Aligned_cols=124 Identities=17% Similarity=0.247 Sum_probs=69.2
Q ss_pred cCCcccc-CHHHHHHHHHHHHhcC-cceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCC
Q 012883 261 NNFCQLV-DPELIRQEISHMKALN-VDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (454)
Q Consensus 261 ~~~~~l~-~~~al~a~L~aLK~~G-VdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD 338 (454)
..+|+.. +.+.-..-|+.+-.+| ||.|.|++.++- ...++|.+.+++.|.| +|+|||.=.+.
T Consensus 85 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~k--vI~S~H~f~~t--- 148 (253)
T PRK02412 85 KEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGK-----------DVVKEMVAFAHEHGVK--VVLSYHDFEKT--- 148 (253)
T ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCCh-----------HHHHHHHHHHHHcCCE--EEEeeCCCCCC---
Confidence 3445443 2233333466666778 999999987641 2367788888887765 88899943321
Q ss_pred CcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccc-cCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEec
Q 012883 339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIG 417 (454)
Q Consensus 339 ~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pV-L~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VG 417 (454)
-+.|-+.. .-.++.++|+|-+.+ ..-+++-++.. .+ .|..++..-.. .+-=|.++
T Consensus 149 -----P~~~~l~~---------------~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~~~--~~P~i~~~ 204 (253)
T PRK02412 149 -----PPKEEIVE---------------RLRKMESLGADIVKIAVMPQSEQDVLT-LL-NATREMKELYA--DQPLITMS 204 (253)
T ss_pred -----cCHHHHHH---------------HHHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhcCC--CCCEEEEe
Confidence 22232210 112556778887665 23344444433 22 33444433111 23457899
Q ss_pred ccCcccc
Q 012883 418 LGPSGEL 424 (454)
Q Consensus 418 LGPaGEL 424 (454)
||+-|-+
T Consensus 205 MG~~G~~ 211 (253)
T PRK02412 205 MGKLGRI 211 (253)
T ss_pred CCCCchH
Confidence 9998854
No 29
>PRK01060 endonuclease IV; Provisional
Probab=87.78 E-value=1.3 Score=41.80 Aligned_cols=66 Identities=8% Similarity=0.096 Sum_probs=44.1
Q ss_pred EeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccc-----hHHHHHHHHHHHcCCceEEEEE
Q 012883 254 MLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-----SGYRELFNIIREFNLKVQVVMA 328 (454)
Q Consensus 254 MLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdW-----SgY~~Lf~mir~~GLKlqvVMS 328 (454)
|+++++.+.. . +.|+..|+.++++|.|+|++.++ +|..+.. ..-+++-+++++.||++..+ +
T Consensus 1 ~~~~g~~~~~--~---~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~-~ 67 (281)
T PRK01060 1 MKLIGAHVSA--A---GGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISPEDI-L 67 (281)
T ss_pred CCeEEEeeec--C---CCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCCCce-E
Confidence 5667666532 1 22899999999999999999654 2333322 23567888999999996422 2
Q ss_pred eecc
Q 012883 329 FHEY 332 (454)
Q Consensus 329 FHqC 332 (454)
-|.+
T Consensus 68 ~h~~ 71 (281)
T PRK01060 68 VHAP 71 (281)
T ss_pred Eecc
Confidence 3554
No 30
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=87.69 E-value=0.44 Score=47.64 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=61.8
Q ss_pred CCCCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 244 TGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 244 ~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
+...+|.|.+-.--..-.+...+.+. +++.|+.+++.||.||.||..= +..|+-=..|.++++.+.+.+|
T Consensus 82 a~~KgVgi~lw~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKidF~~------~d~Q~~v~~y~~i~~~AA~~~L-- 151 (273)
T PF10566_consen 82 AKEKGVGIWLWYHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKIDFMD------RDDQEMVNWYEDILEDAAEYKL-- 151 (273)
T ss_dssp HHHTT-EEEEEEECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE--S------STSHHHHHHHHHHHHHHHHTT---
T ss_pred HHHcCCCEEEEEeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeCcCC------CCCHHHHHHHHHHHHHHHHcCc--
Confidence 34568888777655442111113333 6999999999999999999763 3666666669999999998876
Q ss_pred EEEEEeeccCCCCCCCcccccch-HHHhhhcCCCCeEEecCCCCccCceeee
Q 012883 324 QVVMAFHEYGANDSGDAWISLPQ-WVMEIGKGNQDIFFTDREGRRNTECLSW 374 (454)
Q Consensus 324 qvVMSFHqCGGNVGD~~~IPLP~-WV~e~g~~npDIfyTDrsG~Rn~EcLSl 374 (454)
.+-||.|- +|. |- ...|.+ ..++|-|-.||-.|
T Consensus 152 --mvnfHg~~----------kPtG~~----RTyPN~--mT~EgVrG~E~~~~ 185 (273)
T PF10566_consen 152 --MVNFHGAT----------KPTGLR----RTYPNL--MTREGVRGQEYNKW 185 (273)
T ss_dssp --EEEETTS-------------TTHH----HCSTTE--EEE--S--GGGGGT
T ss_pred --EEEecCCc----------CCCccc----ccCccH--HHHHHhhhhhhccc
Confidence 45799764 333 32 244543 34677777777433
No 31
>PLN02814 beta-glucosidase
Probab=87.24 E-value=1.6 Score=46.75 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=63.6
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccc---hHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW---SGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdW---SgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
..+..-.+..++-||++|++.--.=+-|.-+++.+.+++|- ..|++|++.+++.|++-.|-|. | -
T Consensus 73 ~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H-----------~ 140 (504)
T PLN02814 73 SDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H-----------Y 140 (504)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 46788899999999999999999999999999987766665 6799999999999999887775 4 3
Q ss_pred ccchHHHh
Q 012883 343 SLPQWVME 350 (454)
Q Consensus 343 PLP~WV~e 350 (454)
.||.|+.+
T Consensus 141 dlP~~L~~ 148 (504)
T PLN02814 141 DLPQSLED 148 (504)
T ss_pred CCCHHHHH
Confidence 69999976
No 32
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=86.94 E-value=3.8 Score=40.24 Aligned_cols=118 Identities=14% Similarity=0.019 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchH
Q 012883 269 PELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~W 347 (454)
.++++..+++|..+|++.|.+|= -|+..-...+......+.+++.+.+.+.+...+++ +|-|.||....-...-+-|
T Consensus 154 a~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~--lHiC~G~~~~~~~~~~~y~ 231 (332)
T cd03311 154 ALALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIH--THICYGNFRSTWAAEGGYE 231 (332)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEE--EEEECCCCcccccccCcHH
Confidence 36788899999999999999986 56543321122445566677777777656565554 5999999743322222334
Q ss_pred -HHhh-hcCCCCeEEecCCCCc--cCceee-eecCcccc---cCCCchh
Q 012883 348 -VMEI-GKGNQDIFFTDREGRR--NTECLS-WGVDKERV---LNGRTGI 388 (454)
Q Consensus 348 -V~e~-g~~npDIfyTDrsG~R--n~EcLS-lgvD~~pV---L~GRTpi 388 (454)
+++. .+...|.|+.|-...+ +-|.|. +.-|+.-+ +..+++.
T Consensus 232 ~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~~k~l~~GvVd~~~~~ 280 (332)
T cd03311 232 PIAEYIFELDVDVFFLEYDNSRAGGLEPLKELPYDKKVGLGVVDVKSPE 280 (332)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCCCCEEEeeeecCCCCC
Confidence 2332 2445787777665433 444443 22244332 3556653
No 33
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=86.75 E-value=0.76 Score=45.05 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=40.6
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCC
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGG 334 (454)
..++++..+|+|+|.+.--|+-..--+|..|. |-+++++++-+++ ..+| +|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~----~~~i--lh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG----CPTI--LHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc----CCcE--EEECCC
Confidence 45566677899999998888743322566776 9999999999987 2233 588984
No 34
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.34 E-value=3.5 Score=40.58 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 247 ~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
..+|+.+|.=...|-. -.++.-++.+|++|||||.|. + .-+....++++.+++.||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~~-------~G~e~f~~~~~~aGvdGviip----------D--Lp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQ-------YGVERFAADAAEAGVDGLIIP----------D--LPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHhh-------cCHHHHHHHHHHcCCcEEEEC----------C--CCHHHHHHHHHHHHHcCCcEEEE
Confidence 4578888887766532 356777999999999999995 1 12457889999999999999987
Q ss_pred EEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCC
Q 012883 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREG 365 (454)
Q Consensus 327 MSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG 365 (454)
++=. .-+..+..+.+..++ |+|..+.|
T Consensus 149 vap~------------t~~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 149 VAPT------------TTDERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred eCCC------------CCHHHHHHHHHhCCCcEEEEeCCC
Confidence 7544 235677777666677 66656655
No 35
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=86.11 E-value=2 Score=42.82 Aligned_cols=64 Identities=22% Similarity=0.533 Sum_probs=44.8
Q ss_pred HHHHHhcCcceEEEe--eeeeeeecCCCccccchHHHHHHHHHHHcCCceEE-EEEeeccCCCCCCCcccccchHHHhh
Q 012883 276 ISHMKALNVDGVIVN--CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV-VMAFHEYGANDSGDAWISLPQWVMEI 351 (454)
Q Consensus 276 L~aLK~~GVdGVmVD--VWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv-VMSFHqCGGNVGD~~~IPLP~WV~e~ 351 (454)
.+++-..-..-|... .=|+.+|. .+++|||+.-.++++.+++.|++++- .|..|. -.|.|+...
T Consensus 27 ~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~-----------~~P~w~~~~ 93 (320)
T PF00331_consen 27 YRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVWHS-----------QTPDWVFNL 93 (320)
T ss_dssp HHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS-----------SS-HHHHTS
T ss_pred HHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEEcc-----------cccceeeec
Confidence 333333445556554 78999998 58899999999999999999999983 444564 379999864
No 36
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=85.71 E-value=1.4 Score=44.85 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=52.4
Q ss_pred CccEEEEeecceecCC-----c----cccCHHHHHHH-----------HHHHHhcCcce-EEEeee---eeeeecCCCcc
Q 012883 248 YIPVYVMLANHVINNF-----C----QLVDPELIRQE-----------ISHMKALNVDG-VIVNCW---WGIVEGWNPQK 303 (454)
Q Consensus 248 ~VpVyVMLPLdvV~~~-----~----~l~~~~al~a~-----------L~aLK~~GVdG-VmVDVW---WGiVE~~~P~q 303 (454)
.+-..+..|++++... + -+.+|+.+.+- +++...+|++| |.+... -+++..+-=.+
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~e 251 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEK 251 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHH
Confidence 4556788899855421 1 12456555444 44556779998 666664 44554433334
Q ss_pred ccchHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 304 YAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 304 YdWSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
|-|-+++++++-|++.|.+ ++ +|.||
T Consensus 252 f~~P~~k~i~~~i~~~g~~--~i--lh~cG 277 (378)
T cd03308 252 FYWPSFKKVVEGLAARGQR--IF--LFFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHhcCCC--EE--EEcCC
Confidence 4499999999999998753 33 39998
No 37
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=85.59 E-value=2.5 Score=44.89 Aligned_cols=73 Identities=11% Similarity=0.235 Sum_probs=62.3
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCC-C---ccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-P---QKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~-P---~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~ 341 (454)
..+..-.+..++-||++|++..-.=+-|.-|++.+ + ++=-...|++|++.+++.|++-.|.|- |
T Consensus 69 ~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H----------- 136 (478)
T PRK09593 69 IDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H----------- 136 (478)
T ss_pred cchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 46788999999999999999999999999999975 2 344467899999999999999877774 4
Q ss_pred cccchHHHh
Q 012883 342 ISLPQWVME 350 (454)
Q Consensus 342 IPLP~WV~e 350 (454)
--||.|+.+
T Consensus 137 ~dlP~~L~~ 145 (478)
T PRK09593 137 FDCPMHLIE 145 (478)
T ss_pred cCCCHHHHh
Confidence 369999975
No 38
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=85.29 E-value=2.1 Score=45.43 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=62.7
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCC----CccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~----P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~ 341 (454)
..+..-.+..++-||++|+..--.=+-|.-+++.+ +++=-...|++|++.+++.|++-.|.|. |
T Consensus 63 ~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H----------- 130 (476)
T PRK09589 63 IDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H----------- 130 (476)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 46778899999999999999999999999999875 2344477899999999999999888774 4
Q ss_pred cccchHHHhh
Q 012883 342 ISLPQWVMEI 351 (454)
Q Consensus 342 IPLP~WV~e~ 351 (454)
--||.|+.+.
T Consensus 131 ~dlP~~L~~~ 140 (476)
T PRK09589 131 FEMPYHLVTE 140 (476)
T ss_pred CCCCHHHHHh
Confidence 3699999764
No 39
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=85.20 E-value=1.9 Score=39.32 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecC-CCccc-------------cchHHHHHHHHHHHcCCceEEEEEe-ecc
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKY-------------AWSGYRELFNIIREFNLKVQVVMAF-HEY 332 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~-~P~qY-------------dWSgY~~Lf~mir~~GLKlqvVMSF-HqC 332 (454)
|.+.|.+.|..||.+||++|.+- .|.|.. +...| .+..+++|++.+.+.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~---Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS---PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES---S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecc---cccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 46889999999999999999875 333432 12222 2456789999999999998876666 765
Q ss_pred CCC
Q 012883 333 GAN 335 (454)
Q Consensus 333 GGN 335 (454)
..+
T Consensus 79 ~~~ 81 (316)
T PF00128_consen 79 DDH 81 (316)
T ss_dssp TTS
T ss_pred ccc
Confidence 543
No 40
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=84.51 E-value=7.3 Score=36.87 Aligned_cols=109 Identities=17% Similarity=0.301 Sum_probs=64.0
Q ss_pred HHHH-HhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHhhhcC
Q 012883 276 ISHM-KALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKG 354 (454)
Q Consensus 276 L~aL-K~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~ 354 (454)
|+.+ ...|+|.|.||++|.- ...++|.+.+++.|- .+|+|+|.=.+.. +.+.|+..
T Consensus 84 l~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~--kvI~S~H~f~~tp------~~~~l~~~---- 140 (228)
T TIGR01093 84 LKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGT--KIIMSYHDFQKTP------SWEEIVER---- 140 (228)
T ss_pred HHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCC--EEEEeccCCCCCC------CHHHHHHH----
Confidence 4554 6789999999998851 236677777777764 5889999432211 22233211
Q ss_pred CCCeEEecCCCCccCceeeeecCccccc-CCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecccCccccc
Q 012883 355 NQDIFFTDREGRRNTECLSWGVDKERVL-NGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELK 425 (454)
Q Consensus 355 npDIfyTDrsG~Rn~EcLSlgvD~~pVL-~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGLGPaGELR 425 (454)
-.++.++|+|-+.+- .-+++-++. .. .+|..++.... .+-=|.++||+.|-+-
T Consensus 141 -------------~~~~~~~gaDivKia~~a~~~~D~~-~l-l~~~~~~~~~~---~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 141 -------------LEKALSYGADIVKIAVMANSKEDVL-TL-LEITNKVDEHA---DVPLITMSMGDRGKIS 194 (228)
T ss_pred -------------HHHHHHhCCCEEEEEeccCCHHHHH-HH-HHHHHHHHhcC---CCCEEEEeCCCCChhH
Confidence 124456778876652 223333322 22 25555555441 2455789999998653
No 41
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=84.21 E-value=1.2 Score=43.71 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCC
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGG 334 (454)
...++++..+|||+|.+.-=|+--.--+|..|. +-+++++++-+++. ...+|-||.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~------~~ilH~cG~ 241 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL------PTILHICGD 241 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC------CcEEEECCC
Confidence 445566778999999887777532223455554 89999999998865 234688973
No 42
>PLN02849 beta-glucosidase
Probab=83.69 E-value=2.8 Score=44.95 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=63.1
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
..+..-.+..++-||++|++.--.=+-|.-+++.+.++.| ...|++|++.+++.|++-.|-|. | -
T Consensus 75 ~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H-----------~ 142 (503)
T PLN02849 75 CDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H-----------Y 142 (503)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------C
Confidence 4678889999999999999999999999999998655444 56799999999999999877774 4 3
Q ss_pred ccchHHHhh
Q 012883 343 SLPQWVMEI 351 (454)
Q Consensus 343 PLP~WV~e~ 351 (454)
-||.|+.+.
T Consensus 143 dlP~~L~~~ 151 (503)
T PLN02849 143 DHPQYLEDD 151 (503)
T ss_pred CCcHHHHHh
Confidence 699999763
No 43
>PLN02998 beta-glucosidase
Probab=82.98 E-value=3.1 Score=44.57 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=63.2
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
..+..-.+..++-||++|++.--.=+-|.-|++.+.+.+| ...|++|++-+++.|++-.|.|. | -
T Consensus 78 ~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H-----------~ 145 (497)
T PLN02998 78 CDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H-----------F 145 (497)
T ss_pred ccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 4678889999999999999999999999999998766554 56799999999999999777774 4 3
Q ss_pred ccchHHHh
Q 012883 343 SLPQWVME 350 (454)
Q Consensus 343 PLP~WV~e 350 (454)
.||.|+.+
T Consensus 146 dlP~~L~~ 153 (497)
T PLN02998 146 DLPQALED 153 (497)
T ss_pred CCCHHHHH
Confidence 69999976
No 44
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=82.79 E-value=1 Score=43.87 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=61.3
Q ss_pred HHHHHHHhcCcceE-EEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHhhh
Q 012883 274 QEISHMKALNVDGV-IVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG 352 (454)
Q Consensus 274 a~L~aLK~~GVdGV-mVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g 352 (454)
..++++..+|+|+| +.|.+=.+.-++-=.+|-|-+|++|++.|++.|.+ ..-+|-||- ..--|+.+ .+
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG~-----~~~~~~~l-~~-- 254 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICGN-----TTPILDDL-AD-- 254 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETTH-----G-GGHHHH-HT--
T ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECCc-----hHHHHHHH-Hh--
Confidence 34566778999999 45522222222223478899999999999999985 445699982 22223333 33
Q ss_pred cCCCCeEEecCCCCc--------cCceeeeecCcccccCCCchhHhhHHHHHHHH
Q 012883 353 KGNQDIFFTDREGRR--------NTECLSWGVDKERVLNGRTGIEVYFDFMRSFR 399 (454)
Q Consensus 353 ~~npDIfyTDrsG~R--------n~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr 399 (454)
...|++-.|..=.- .+=||-=++|..-+|. -|+-+++..--+-..
T Consensus 255 -~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 255 -LGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp -SS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred -cCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCcccccc-CCHHHHHHHHHHHHH
Confidence 33565555533211 1222323366655666 788888875555554
No 45
>PRK08508 biotin synthase; Provisional
Probab=82.06 E-value=9.6 Score=37.30 Aligned_cols=53 Identities=19% Similarity=0.058 Sum_probs=39.0
Q ss_pred cCHHHHHHHHHHHHhcCcceEEE-eeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 267 VDPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmV-DVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
.+++.+.+..+.++..|+..|.+ +-+=+ .....+.+|.++++.||+.++++.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~------~~~~~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRG------LDDKKLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCC------CCcccHHHHHHHHHHHHhhCCCcEE
Confidence 45688888888889999998865 32222 2234677899999999998876654
No 46
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=81.89 E-value=1.4 Score=38.16 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=36.0
Q ss_pred HHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 276 L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
|+.+|++|+++|++.+|+..-.... =....++.+++++.||++..+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~i~~~~ 47 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-----DDEAEELRRLLEDYGLKIASLH 47 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-----hHHHHHHHHHHHHcCCeEEEEe
Confidence 6789999999999999987332210 2457899999999999965543
No 47
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=81.81 E-value=8.1 Score=36.07 Aligned_cols=130 Identities=13% Similarity=0.162 Sum_probs=70.2
Q ss_pred EEeecceecCCcccc-CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 253 VMLANHVINNFCQLV-DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 253 VMLPLdvV~~~~~l~-~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
+.+-+-....+|... +.+.-..-|+.+-.+|+|.|.||++ .+.-+....... ..-+..+|+|+|-
T Consensus 57 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~--~~~~~~iI~S~H~ 122 (224)
T PF01487_consen 57 IIFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAA--RKGGTKIILSYHD 122 (224)
T ss_dssp EEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHH--HHTTSEEEEEEEE
T ss_pred EEEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHH--hhCCCeEEEEecc
Confidence 334444455666554 3345555666677788998888765 122233233333 4445668999995
Q ss_pred cCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccc-cCCCchhHhhHHHHHHHHHHHhhhhcccc
Q 012883 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGL 410 (454)
Q Consensus 332 CGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pV-L~GRTpiq~Y~DFMrSFr~~F~d~l~~g~ 410 (454)
..+....+- |..++ .++..+|+|-+.+ ..-+++-++.. +..|..+|.... .
T Consensus 123 f~~tp~~~~---l~~~~--------------------~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~~---~ 174 (224)
T PF01487_consen 123 FEKTPSWEE---LIELL--------------------EEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREEP---D 174 (224)
T ss_dssp SS---THHH---HHHHH--------------------HHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHHT---S
T ss_pred CCCCCCHHH---HHHHH--------------------HHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhcc---C
Confidence 443322111 22222 2444577776555 34455555554 556666666652 4
Q ss_pred eeEEEecccCcccc
Q 012883 411 ICAVEIGLGPSGEL 424 (454)
Q Consensus 411 I~eI~VGLGPaGEL 424 (454)
+-=|-++||+.|.+
T Consensus 175 ~p~i~~~MG~~G~~ 188 (224)
T PF01487_consen 175 IPVIAISMGELGRI 188 (224)
T ss_dssp SEEEEEEETGGGHH
T ss_pred CcEEEEEcCCCchh
Confidence 67889999999964
No 48
>PLN02591 tryptophan synthase
Probab=81.48 E-value=8.4 Score=37.98 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 247 ~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
..+|+.+|.=+..|- .-.+++-++.+|++||+||.+. ..-+..-.++.+.++++||....+
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~Gviip------------DLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVP------------DLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeC------------CCCHHHHHHHHHHHHHcCCeEEEE
Confidence 346888888776653 2477888999999999999997 123466778999999999999998
Q ss_pred EEeeccCCCCCCCcccccchHHHhhhcCCCC
Q 012883 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD 357 (454)
Q Consensus 327 MSFHqCGGNVGD~~~IPLP~WV~e~g~~npD 357 (454)
++-. +=+..+..+.+.-++
T Consensus 138 v~Pt------------t~~~ri~~ia~~~~g 156 (250)
T PLN02591 138 TTPT------------TPTERMKAIAEASEG 156 (250)
T ss_pred eCCC------------CCHHHHHHHHHhCCC
Confidence 8644 224566666555555
No 49
>PLN02361 alpha-amylase
Probab=80.45 E-value=5.9 Score=41.51 Aligned_cols=67 Identities=9% Similarity=0.151 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccc-------------hHHHHHHHHHHHcCCceEEEEEe-ecc
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-------------SGYRELFNIIREFNLKVQVVMAF-HEY 332 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdW-------------SgY~~Lf~mir~~GLKlqvVMSF-HqC 332 (454)
+.++.|...|..||.+||++|-+.-= .|..++..|+- ..+++|++.+++.|+|+.+=+-+ |-|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~---~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~ 102 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPP---SQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV 102 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCC---CcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence 35799999999999999999987652 34444444443 35899999999999998775555 777
Q ss_pred CCCC
Q 012883 333 GAND 336 (454)
Q Consensus 333 GGNV 336 (454)
|..-
T Consensus 103 g~~~ 106 (401)
T PLN02361 103 GTTQ 106 (401)
T ss_pred CCCC
Confidence 6543
No 50
>PHA00442 host recBCD nuclease inhibitor
Probab=80.41 E-value=1.6 Score=35.32 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHc
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~ 319 (454)
...|.+|++.||| ||+||.+..+|+-..
T Consensus 29 ~~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 29 NEFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred hHHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 3467888999987 899999999998653
No 51
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=80.31 E-value=6.6 Score=39.16 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=54.2
Q ss_pred CccEEEEeec---ceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 248 YIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 248 ~VpVyVMLPL---dvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
.+||+||+=- |.+-+. ..-+.|...++.+|++|+|||.+= +.- ..++.|...-++|.+.++ ||++-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G----~L~--~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTG----VLD--VDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEe----eEC--CCCCcCHHHHHHHHHHhc--CCceE
Confidence 4999999844 222222 345889999999999999999874 333 477999999999999985 67765
Q ss_pred EEEEeecc
Q 012883 325 VVMAFHEY 332 (454)
Q Consensus 325 vVMSFHqC 332 (454)
-=++|-.|
T Consensus 120 FHRAfD~~ 127 (248)
T PRK11572 120 FHRAFDMC 127 (248)
T ss_pred Eechhhcc
Confidence 44455544
No 52
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.00 E-value=3.6 Score=38.82 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=46.2
Q ss_pred eecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchH--HHHHHHHHHHcCCceEEE
Q 012883 255 LANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG--YRELFNIIREFNLKVQVV 326 (454)
Q Consensus 255 LPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSg--Y~~Lf~mir~~GLKlqvV 326 (454)
+||.+.+. .++....+...++.+|.+|.+||++.+. + .......++|+. .++|-+++++.||++..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~--~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVD-E--SDERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecC-c--cccchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 45655532 2444557889999999999999999642 0 001123456664 567899999999999875
No 53
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.36 E-value=4.9 Score=37.70 Aligned_cols=53 Identities=15% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc--cc--hHHHHHHHHHHHcCCceEEEEEee
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY--AW--SGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY--dW--SgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
-+...|+.++++|+++|++ |+- .+..| ++ ..-++|.++.++.||++-.+..+|
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 5899999999999999998 331 11111 12 245778889999999986555444
No 54
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=78.30 E-value=18 Score=33.92 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=65.1
Q ss_pred eecCCccccCH-HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 012883 259 VINNFCQLVDP-ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (454)
Q Consensus 259 vV~~~~~l~~~-~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVG 337 (454)
....+|.+... +.-..-|+.+-.+|+|.|.||..+ .-..+++..+++. +..+|+|+|.-.+..
T Consensus 64 ~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~--~~kiI~S~H~f~~tp- 127 (225)
T cd00502 64 TKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKG--NTKIIGSYHDFSGTP- 127 (225)
T ss_pred ccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhC--CCEEEEEeccCCCCc-
Confidence 33444544322 223334566667789999998765 2366677766654 455889999544322
Q ss_pred CCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCccccc-CCCchhHhhHHHHHHHHHHHhhhhcccceeEEEe
Q 012883 338 GDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVL-NGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEI 416 (454)
Q Consensus 338 D~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL-~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~V 416 (454)
+.+.|..-. .++..+|+|-+.+- .-+++-++. +.| .|...+.... .+-=|.+
T Consensus 128 -----~~~~l~~~~-----------------~~~~~~gadivKla~~~~~~~D~~-~ll-~~~~~~~~~~---~~p~i~~ 180 (225)
T cd00502 128 -----SDEELVSRL-----------------EKMAALGADIVKIAVMANSIEDNL-RLL-KFTRQVKNLY---DIPLIAI 180 (225)
T ss_pred -----CHHHHHHHH-----------------HHHHHhCCCEEEEEecCCCHHHHH-HHH-HHHHHHHhcC---CCCEEEE
Confidence 233333211 13334566765552 222222222 222 3444444322 2456789
Q ss_pred cccCcccc
Q 012883 417 GLGPSGEL 424 (454)
Q Consensus 417 GLGPaGEL 424 (454)
+||+-|.+
T Consensus 181 ~MG~~G~~ 188 (225)
T cd00502 181 NMGELGKL 188 (225)
T ss_pred EcCCCCch
Confidence 99999964
No 55
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=78.08 E-value=5.1 Score=39.65 Aligned_cols=63 Identities=11% Similarity=0.318 Sum_probs=42.8
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcc---ccch---HHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWS---GYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~q---YdWS---gY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|.-...+++-.++|+ .|+..|++|||=|- ...|-. +.+. ..+++.+.|++...+ .-+|||+
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg~--dgePvV~Hg~tlts~i~f~dv~~~I~~~AF~~S~yPvIlsl 95 (229)
T cd08627 24 DQFSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPVIYHGHTLTTKIKFSDVLHTIKEHAFVTSEYPIILSI 95 (229)
T ss_pred CccCCcccHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCceEHHHHHHHHHHhhccCCCCCEEEEE
Confidence 56666667777777877 79999999999871 001111 1222 268999999999884 5566664
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.63 E-value=12 Score=36.90 Aligned_cols=83 Identities=6% Similarity=0.149 Sum_probs=53.4
Q ss_pred cCHHHHHHHHHHHHhcC--cceEEEeeeeeeeecCCCcccc-----chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCC
Q 012883 267 VDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYA-----WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~G--VdGVmVDVWWGiVE~~~P~qYd-----WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~ 339 (454)
.+.+.|..-++.+++.| +|.|.+|.-|-- .-+.|. |-.-+++++-+++.|+|+-+++.=+-+- +
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~-----~ 97 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT-----D 97 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC-----C
Confidence 45688889999999988 789999985532 122333 3456788888999999866666433221 1
Q ss_pred cccccchHHHhhhcCCCCeEEecCCC
Q 012883 340 AWISLPQWVMEIGKGNQDIFFTDREG 365 (454)
Q Consensus 340 ~~IPLP~WV~e~g~~npDIfyTDrsG 365 (454)
.=+.+++. ..++|.++..|
T Consensus 98 ------s~~~~e~~-~~g~~vk~~~g 116 (303)
T cd06592 98 ------SENFREAV-EKGYLVSEPSG 116 (303)
T ss_pred ------CHHHHhhh-hCCeEEECCCC
Confidence 11223333 34678888776
No 57
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=77.37 E-value=5.1 Score=41.14 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=38.1
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.-|.-||..||.-|-+-|| |.+...+..|...=.+++.-++++|||+- |-||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~vl--ldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKVL--LDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EEE--EEE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeEE--Eeecc
Confidence 4678899999999999997 55544577888888888899999999965 88884
No 58
>smart00642 Aamy Alpha-amylase domain.
Probab=76.76 E-value=10 Score=34.61 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=48.9
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeec-CCCccc-------------cchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~-~~P~qY-------------dWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.-+.+.+.+.|..||++||++|-+---+--... .....| .+..+++|.+.+++.|+||..=+-+.-
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 456799999999999999999976433221110 001111 346688999999999999988888877
Q ss_pred cCC
Q 012883 332 YGA 334 (454)
Q Consensus 332 CGG 334 (454)
|+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 775
No 59
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=75.97 E-value=3.3 Score=40.73 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHHhcCcceEEE-eeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHH
Q 012883 274 QEISHMKALNVDGVIV-NCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (454)
Q Consensus 274 a~L~aLK~~GVdGVmV-DVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~ 349 (454)
..++++.++|+|+|.+ |-|=++ -+|.+|+ |-++++|++-+++.|-. .+| .|-|||+. ++-.|+.
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~~---lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~i--lh~cg~~~------~~~~~~~ 248 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAGA---LSPEDFEEFVLPYLKRIIEEVKKRLPG-VPV--ILFAKGAG------GLLEDLA 248 (335)
T ss_pred HHHHHHHHhCCCEEEEeCccccc---CCHHHHHHHHHHHHHHHHHHHHHhCCC-CCE--EEEcCCCH------HHHHHHH
Confidence 3344556689999974 443333 3566666 99999999999998311 133 46677441 4555555
Q ss_pred hhhcCCCCeEEecCC
Q 012883 350 EIGKGNQDIFFTDRE 364 (454)
Q Consensus 350 e~g~~npDIfyTDrs 364 (454)
+. ..|++-.|..
T Consensus 249 ~~---~~~~~s~d~~ 260 (335)
T cd00717 249 QL---GADVVGLDWR 260 (335)
T ss_pred hc---CCCEEEeCCC
Confidence 43 3466666654
No 60
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.52 E-value=26 Score=38.20 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc-------------chHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd-------------WSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
|.+.|.+.|..||.+||++|-+-= |.|..+-..|+ ...+++|++.+.+.|+||..=+-|.-||
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~ 252 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTG 252 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 569999999999999999997743 33444444443 3578899999999999999888888777
No 61
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=75.29 E-value=7.5 Score=38.64 Aligned_cols=89 Identities=22% Similarity=0.256 Sum_probs=60.3
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
...+|+.+|.=.+.|-. ..++.-++.+|++|||||.+. += -+....++.+.+++.||++..
T Consensus 85 ~~~~pivlm~Y~N~i~~-------~G~e~F~~~~~~aGvdGlIip--------DL----P~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIFQ-------YGIERFFKEAKEAGVDGLIIP--------DL----PPEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHHH-------H-HHHHHHHHHHHTEEEEEET--------TS----BGGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHhc-------cchHHHHHHHHHcCCCEEEEc--------CC----ChHHHHHHHHHHHHcCCeEEE
Confidence 56899999998877642 457777999999999999884 11 245678999999999999998
Q ss_pred EEEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCC
Q 012883 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREG 365 (454)
Q Consensus 326 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG 365 (454)
.++=+ .=+..+..+.+.-.. ||+..+.|
T Consensus 146 lv~p~------------t~~~Ri~~i~~~a~gFiY~vs~~G 174 (259)
T PF00290_consen 146 LVAPT------------TPEERIKKIAKQASGFIYLVSRMG 174 (259)
T ss_dssp EEETT------------S-HHHHHHHHHH-SSEEEEESSSS
T ss_pred EECCC------------CCHHHHHHHHHhCCcEEEeeccCC
Confidence 88743 224556665555445 44445554
No 62
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=74.43 E-value=2.9 Score=29.60 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCcceEEEe
Q 012883 273 RQEISHMKALNVDGVIVN 290 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVD 290 (454)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345577888999999987
No 63
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=73.36 E-value=9.2 Score=36.74 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=46.7
Q ss_pred CccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 248 ~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
.+|+.+|.=++.+-. ..+..-++.++.+||+||.+.-. | + ..-.++++.++++|++..+++
T Consensus 76 ~~pv~lm~y~n~~~~-------~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPILQ-------YGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHHH-------hCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 467888855544321 33567799999999999999411 1 1 256789999999999999998
Q ss_pred Eee
Q 012883 328 AFH 330 (454)
Q Consensus 328 SFH 330 (454)
+-+
T Consensus 137 ~P~ 139 (242)
T cd04724 137 APT 139 (242)
T ss_pred CCC
Confidence 744
No 64
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=72.75 E-value=6.6 Score=38.79 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=42.5
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc-cc-----hHHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-AW-----SGYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY-dW-----SgY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|.-...+++-.++|+ .|++.|++|||=|- ...|-.| +| =..+++++.|++...+ .-+|||+
T Consensus 24 ~Ql~~ess~eay~~AL~-~GcR~vElDvwdg~--dgePvV~HG~tlts~i~f~dv~~~I~~~aF~~s~yPvIlsl 95 (229)
T cd08592 24 DQLSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPIIYHGHTLTSKIKFMDVLKTIKEHAFVTSEYPVILSI 95 (229)
T ss_pred CccCCccCHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCCcCHHHHHHHHHHHhccCCCCCEEEEE
Confidence 45666666676667776 79999999999872 1112222 11 2468999999999874 5566664
No 65
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=72.36 E-value=4.7 Score=39.84 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=46.2
Q ss_pred HHHHHHHhcCcceEE-EeeeeeeeecCCCcccc---chHHHHHHHHHHHc-CCceEEEEEeeccCCCCCCCcccccchHH
Q 012883 274 QEISHMKALNVDGVI-VNCWWGIVEGWNPQKYA---WSGYRELFNIIREF-NLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (454)
Q Consensus 274 a~L~aLK~~GVdGVm-VDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~-GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 348 (454)
..++++.++|+|+|. .|-|=++ -+|.+|+ |-++++|++-+++. |- .+| .|-|||.. ++-.|+
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~~---lsp~~f~ef~~p~~k~i~~~i~~~~~~--~~i--lh~cg~~~------~~~~~~ 250 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAGA---LSPEDFEEFVLPYLKKIIEEVKARLPN--VPV--ILFAKGAG------HLLEEL 250 (338)
T ss_pred HHHHHHHHcCCCEEEEECCcccc---CCHHHHHHHHHHHHHHHHHHHHHhCCC--CCE--EEEeCCcH------HHHHHH
Confidence 344456679999997 4444333 4566666 99999999999986 21 234 46677431 344455
Q ss_pred HhhhcCCCCeEEecCC
Q 012883 349 MEIGKGNQDIFFTDRE 364 (454)
Q Consensus 349 ~e~g~~npDIfyTDrs 364 (454)
.+. ..|++-.|..
T Consensus 251 ~~~---~~~~~s~d~~ 263 (338)
T TIGR01464 251 AET---GADVVGLDWT 263 (338)
T ss_pred Hhc---CCCEEEeCCC
Confidence 443 3566655554
No 66
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=72.24 E-value=14 Score=34.16 Aligned_cols=58 Identities=28% Similarity=0.532 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecC--CCccc----------cchHHHHHHHHHHHcCCceEEEEEe
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGW--NPQKY----------AWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~--~P~qY----------dWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
+++.-+..|++||++|++-|.|= |.-.+.. .|-++ || ...+++.+.+.|+||.+=|-|
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~--l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDL--LEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccH--HHHHHHHHHHcCCEEEEeCCC
Confidence 56788899999999999999765 4333332 24444 44 788999999999999886653
No 67
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.02 E-value=12 Score=35.14 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecC-CCccccchH--HHHHHHHHHHcCCceEEE
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKYAWSG--YRELFNIIREFNLKVQVV 326 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~-~P~qYdWSg--Y~~Lf~mir~~GLKlqvV 326 (454)
.+...|+.++++|.++|++.+. +.. .....+|+. -++|.+++++.||++..+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 5788999999999999998532 211 122346653 578999999999999876
No 68
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=70.28 E-value=11 Score=36.12 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeee---cCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVE---GWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE---~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
...|+.||.+|++.|.+.+= +.-| .-. +..+|..|.+.++.++++|+++.+-|-|
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 46688999999999988743 3111 111 2468889999999999999986655544
No 69
>PLN02433 uroporphyrinogen decarboxylase
Probab=70.20 E-value=5.4 Score=39.93 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=37.8
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCC
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGG 334 (454)
..++++.++|++.|++.=-|+- --+|.+|+ |-+.++|++-+++.+-.. -+.+|.||.
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~ 242 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGS 242 (345)
T ss_pred HHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCC
Confidence 4445566799999855433442 23466666 999999999999863222 244598983
No 70
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=69.87 E-value=11 Score=35.90 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccch--HHHHHHHHHHHcCCceEEE
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS--GYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWS--gY~~Lf~mir~~GLKlqvV 326 (454)
.-.+...|+.++++|.++|++.++.. - ..+..++|+ .-.++.+++++.||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET-D--DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc-c--chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 45688899999999999999965432 1 113334443 4567888899999999866
No 71
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=69.59 E-value=15 Score=38.27 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
..+..+..++..|++|+||..+|+. .+..+.+.--..+++.++..|+||-..+=++
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~ 70 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKLFFSFDMN 70 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 5688999999999999999999996 3445677888899999999997765555444
No 72
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=67.84 E-value=13 Score=34.76 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
.+...|+.+|++|.+||++. + | +++ ...++.+++++.||++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~--~-------~--~~~-~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL--F-------P--YDW-DAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEec--C-------C--ccC-CHHHHHHHHHHcCCeEEE
Confidence 58889999999999999873 2 1 122 257788889999999854
No 73
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=67.80 E-value=6.4 Score=39.25 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCcceEE-EeeeeeeeecCCCcccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHH
Q 012883 273 RQEISHMKALNVDGVI-VNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVm-VDVWWGiVE~~~P~qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 348 (454)
...++++.++|||+|+ .|=|=++ -+|..|+ |-+.++|++-+++.|=. .+|| |-|||.. ++-.|+
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~---lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~il--h~cg~~~------~~~~~~ 256 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGA---LSPADYREFVLPYMKRIVAELKREHPD-VPVI--LFGKGAG------ELLEAM 256 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCcccc---CCHHHHHHHHHHHHHHHHHHHHHhCCC-CCEE--EEcCCcH------HHHHHH
Confidence 4455566679999997 4443333 3566666 99999999999987411 2344 7788442 222344
Q ss_pred HhhhcCCCCeEEecCC
Q 012883 349 MEIGKGNQDIFFTDRE 364 (454)
Q Consensus 349 ~e~g~~npDIfyTDrs 364 (454)
.+ ...|++-.|..
T Consensus 257 ~~---~~~~~is~d~~ 269 (346)
T PRK00115 257 AE---TGADVVGLDWT 269 (346)
T ss_pred Hh---cCCCEEeeCCC
Confidence 43 33466655543
No 74
>PRK00957 methionine synthase; Provisional
Probab=66.70 E-value=31 Score=33.83 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHH
Q 012883 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 348 (454)
+++...+++|+.+|++.|.+|= -|.. +-.++.-..+.++.+-+ ++++. +..|-|| |.. |-|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~~--v~lH~CG-~~~-------~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNVP--VAMHVCG-DVS-------NII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCCc--eEEEECC-CcH-------HHH-
Confidence 6778889999999999888872 3332 12234444444444443 33443 4569996 321 112
Q ss_pred HhhhcCCCCeEEecCCCCc
Q 012883 349 MEIGKGNQDIFFTDREGRR 367 (454)
Q Consensus 349 ~e~g~~npDIfyTDrsG~R 367 (454)
-...+.+-|.|+.|-.+..
T Consensus 206 ~~l~~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 206 DDLLKFNVDILDHEFASNK 224 (305)
T ss_pred HHHHhCCCCEEEEeecCCC
Confidence 2234567888888876543
No 75
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=66.20 E-value=17 Score=35.54 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHHhcC--cceEEEee-eeeeeecCCCccccch-----HHHHHHHHHHHcCCceEEEE
Q 012883 266 LVDPELIRQEISHMKALN--VDGVIVNC-WWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~G--VdGVmVDV-WWGiVE~~~P~qYdWS-----gY~~Lf~mir~~GLKlqvVM 327 (454)
-.+.+.+..-++.++++| +|.|.+|. |+ ...+-..|+|. .-+++++-+++.|+|+..++
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~---~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~ 86 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM---KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWI 86 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc---cCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEe
Confidence 357788999999999999 89999998 55 11111245554 67899999999999955544
No 76
>PLN02389 biotin synthase
Probab=65.45 E-value=15 Score=38.21 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCcceEEEeee--eeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVW--WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
..+|++||++|+|.+.+..= ..++..--+ .-+|..+.+.++.+++.|+++
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CCCHHHHHHHHHHHHHcCCeE
Confidence 46789999999999988421 111111111 238899999999999999987
No 77
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=64.48 E-value=20 Score=40.55 Aligned_cols=127 Identities=15% Similarity=0.176 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHH----HHHHHHHcCCceEEEEEeeccCCCCCCCcccc
Q 012883 269 PELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRE----LFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~----Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IP 343 (454)
..+++..+++|..+|+.-|-||- -| .|.-....-+|..|.+ .|+.+-+ |++-...+++|-|=||..+ |
T Consensus 580 A~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i- 652 (758)
T PRK05222 580 ALAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I- 652 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-
Confidence 36788899999999999999983 23 3443334556766654 4454443 6654556789999888764 1
Q ss_pred cchHHHhhhcCCCCeEEecCCCCccCceeeee----cCccc---ccCCCchhHhhHHHHHHHHHHHhhhhc
Q 012883 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWG----VDKER---VLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (454)
Q Consensus 344 LP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlg----vD~~p---VL~GRTpiq~Y~DFMrSFr~~F~d~l~ 407 (454)
+|. +.+-|.|.++.+-. +.+.|-|... .++.- |...++|-=.--|-|..=-.++..+++
T Consensus 653 ~~~----i~~l~vD~~~lE~~-rs~~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~ 718 (758)
T PRK05222 653 IDA----IAALDADVISIETS-RSDMELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVIP 718 (758)
T ss_pred HHH----HHhCCCCEEEEEec-CCCchhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 222 24567887776622 2224444322 23211 346677765666666666666666653
No 78
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=64.15 E-value=7.1 Score=39.42 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=60.6
Q ss_pred HHHHHhc-CcceEEEeeeeee-----eecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHH
Q 012883 276 ISHMKAL-NVDGVIVNCWWGI-----VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (454)
Q Consensus 276 L~aLK~~-GVdGVmVDVWWGi-----VE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~ 349 (454)
+++...+ |+|+|.+==.|+- ...+-=.+|-|-+|++|++-+++.| . ....+|.||.. -.| |+..+
T Consensus 161 ~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~-g--~piilH~cG~~----~~~-l~~~~- 231 (321)
T cd03309 161 YERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT-S--ALIVHHSCGAA----ASL-VPSMA- 231 (321)
T ss_pred HHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc-C--CceEEEeCCCc----HHH-HHHHH-
Confidence 3333344 9999998444442 3333333445999999999999884 1 23456999922 111 33332
Q ss_pred hhhcCCCCeEEecCCC-Cc-----c---CceeeeecCcccccCCCchhHhhHHHHHHHHHHHhh
Q 012883 350 EIGKGNQDIFFTDREG-RR-----N---TECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (454)
Q Consensus 350 e~g~~npDIfyTDrsG-~R-----n---~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d 404 (454)
+...|++-.|..- .- . +=+|.=.+|...++.+.| -|.=.+..+.--++|..
T Consensus 232 ---e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~~L~~~~t-~E~i~~~v~~~l~~~g~ 291 (321)
T cd03309 232 ---EMGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVALDTATW-PEEDARGVAKAAAECAP 291 (321)
T ss_pred ---HcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChHHhcCCCC-HHHHHHHHHHHHHHhCC
Confidence 2234555555433 00 0 112222355544455555 34445555555555554
No 79
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=63.94 E-value=37 Score=33.68 Aligned_cols=90 Identities=16% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 247 ~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
..+|+.+|.=+..|-. -.+++-++.+|++|||||.+.-. | +....++++.++++||++..+
T Consensus 90 ~~~p~vlm~Y~N~i~~-------~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVLH-------YGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHHH-------hCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 4568888887766532 36788899999999999998642 1 245789999999999999999
Q ss_pred EEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCCCc
Q 012883 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRR 367 (454)
Q Consensus 327 MSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG~R 367 (454)
++-+ .=+..+..+.+.-.. |++-.+.|..
T Consensus 151 v~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 151 IAPT------------SSKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred ECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 9865 224556555444333 4444555433
No 80
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=63.89 E-value=13 Score=37.37 Aligned_cols=64 Identities=17% Similarity=0.375 Sum_probs=45.3
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cchH---HHHHHHHHHHcCCc---eEEEEEe
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSG---YRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWSg---Y~~Lf~mir~~GLK---lqvVMSF 329 (454)
+++|.-....+...++|+ .|+-.|++|||=| +...|-.| .+.. .+++.+.|++...+ .-+|||+
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlsl 95 (258)
T cd08631 23 EDQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSL 95 (258)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 356666667777888887 4999999999987 22223322 2222 78999999999887 5667775
No 81
>PRK09989 hypothetical protein; Provisional
Probab=63.42 E-value=19 Score=33.89 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
-|...|+++|++|.+||++-. +..+++ .++.+++++.||++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~~---~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYST---LQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCCH---HHHHHHHHHcCCcEEE
Confidence 478899999999999999932 222443 5788889999999764
No 82
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=61.72 E-value=12 Score=36.05 Aligned_cols=71 Identities=23% Similarity=0.416 Sum_probs=46.6
Q ss_pred CCCccEEEEeec---ceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCc
Q 012883 246 TPYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLK 322 (454)
Q Consensus 246 ~~~VpVyVMLPL---dvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLK 322 (454)
...+||+||+=- |.+-+. ..-+.|...++.+|++|+|||.+ |..- .++..|...-++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~Vf----G~L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVF----GALT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEE----EeEC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 457899999854 233222 34588999999999999999987 4444 377899999999999887 555
Q ss_pred eEEEEEeec
Q 012883 323 VQVVMAFHE 331 (454)
Q Consensus 323 lqvVMSFHq 331 (454)
+ .||-
T Consensus 117 ~----tFHR 121 (201)
T PF03932_consen 117 V----TFHR 121 (201)
T ss_dssp E----EE-G
T ss_pred E----EEeC
Confidence 4 4564
No 83
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=61.01 E-value=30 Score=33.93 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=47.1
Q ss_pred CccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 248 ~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
.+|+..|+=.+.|- .-.++.-++.++++||+||.+.-- | +..-.++++.+++.||++..++
T Consensus 87 ~~plv~m~Y~Npi~-------~~G~e~f~~~~~~aGvdgviipDl--------p----~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLIF-------RKGVEEFYAKCKEVGVDGVLVADL--------P----LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHHh-------hhhHHHHHHHHHHcCCCEEEECCC--------C----hHHHHHHHHHHHHCCCcEEEEE
Confidence 46766776554432 246788899999999999988731 2 2346789999999999998887
Q ss_pred Eee
Q 012883 328 AFH 330 (454)
Q Consensus 328 SFH 330 (454)
+-+
T Consensus 148 ~P~ 150 (256)
T TIGR00262 148 APN 150 (256)
T ss_pred CCC
Confidence 654
No 84
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=60.82 E-value=28 Score=34.37 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcc------ccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK------YAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~q------YdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
.+++++++++|..+|+.-|-+|-= .+.+.-.... .+|.-+.+ .+..+.-..-+.+.+|-|+||..+..
T Consensus 153 a~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~v~~H~C~~~~~~~~-- 226 (324)
T PF01717_consen 153 AEAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAE---ALNRAVKGEDATVGVHVCRGNYPSIL-- 226 (324)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHH---HHHHTTSTTTSEEEEEESSSCHCTTH--
T ss_pred HHHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHH---HHHhccCCCCCEEEEEecCccchhhH--
Confidence 367888999999999999999844 1112111111 23332222 33333222344568899999854221
Q ss_pred ccchHHHhhhcCCCCeEEecCCCCc
Q 012883 343 SLPQWVMEIGKGNQDIFFTDREGRR 367 (454)
Q Consensus 343 PLP~WV~e~g~~npDIfyTDrsG~R 367 (454)
-...+.+.|.|+.+-...+
T Consensus 227 ------~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 ------PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp ------HHHHCSS-SEEEEEETSST
T ss_pred ------HHHhhcccceEEeecccCC
Confidence 2344667887776655554
No 85
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=60.62 E-value=19 Score=33.97 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
.|+..|++++++|.+||++ |+ +... ..+++.+++++.||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl---~~------~~~~---~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEF---MF------PYDY---DIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEE---cC------CCCC---CHHHHHHHHHHcCCcE
Confidence 4888899999999999999 22 1122 3678888899999997
No 86
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=60.49 E-value=81 Score=34.40 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=83.5
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCc-ccc---chHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQ-KYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~-qYd---WSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~ 341 (454)
.....-.+..++-+|++|+...-+-+=|.-+-+.+.. ..| =..|++||+-+.+.|++..|-|+ |
T Consensus 55 ~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-H----------- 122 (460)
T COG2723 55 SDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-H----------- 122 (460)
T ss_pred cchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 4567888999999999999999999999998886544 344 34499999999999999877774 4
Q ss_pred cccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcc-cceeEEEeccc
Q 012883 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEIGLG 419 (454)
Q Consensus 342 IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~-g~I~eI~VGLG 419 (454)
..||.|+.+.. .|=.| |.-|+.|..|-+---..|.+..+- -|.-|+.|=+.
T Consensus 123 fd~P~~L~~~y-----------gGW~n----------------R~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~ 174 (460)
T COG2723 123 FDLPLWLQKPY-----------GGWEN----------------RETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE 174 (460)
T ss_pred cCCcHHHhhcc-----------CCccC----------------HHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc
Confidence 37999998542 23333 344777777777666777765531 14556655443
No 87
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=60.44 E-value=66 Score=30.67 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
....|+.++.+||.+|.+... +...++.+.++.++.+.++.+.+-+|-
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~------------~~~~~~~~~~~~~~~~~~v~~~~GiHP 63 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVST------------DPEDWERVLELASQYPDRVYPALGIHP 63 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEES------------SHHHHHHHHHHHHHTTTEEEEEE---G
T ss_pred HHHHHHHHHHcCCCEEEEcCC------------CHHHhHHHHHHHhcCCCeEEEEecCCc
Confidence 567778999999998853221 113456888899999999999999993
No 88
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=59.61 E-value=14 Score=38.84 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=70.3
Q ss_pred HHHHHHHHHHH-hcCcceEEEeeeeee------ee---cCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCC-
Q 012883 270 ELIRQEISHMK-ALNVDGVIVNCWWGI------VE---GWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG- 338 (454)
Q Consensus 270 ~al~a~L~aLK-~~GVdGVmVDVWWGi------VE---~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD- 338 (454)
..++.+|+.++ .+|+.-|-+ ||-+ +. ..+...|||+.-.++++.+.+.|||.-+-|+|=-.+=..|.
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~--h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~ 116 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRF--HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQ 116 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEE--S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--
T ss_pred HHHHHHHHHHHhccCceEEEE--EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCC
Confidence 56788888887 699988854 4443 21 12223399999999999999999999999998433211111
Q ss_pred -----Ccccccch----HH---HhhhcCCCCeEEecCCCCccCceeeee--cCcccccC---CCchhHhhHHHHHHHHHH
Q 012883 339 -----DAWISLPQ----WV---MEIGKGNQDIFFTDREGRRNTECLSWG--VDKERVLN---GRTGIEVYFDFMRSFRTE 401 (454)
Q Consensus 339 -----~~~IPLP~----WV---~e~g~~npDIfyTDrsG~Rn~EcLSlg--vD~~pVL~---GRTpiq~Y~DFMrSFr~~ 401 (454)
.-+|.-|+ |- ..-.+ -|.+|.|.. |.-+|. +=++|=++ .....+.|.+|++.....
T Consensus 117 ~~~~~~~~~~pp~~~~~W~~lv~~~~~-----h~~~RYG~~--ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~ 189 (486)
T PF01229_consen 117 TVFWYKGNISPPKDYEKWRDLVRAFAR-----HYIDRYGIE--EVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARA 189 (486)
T ss_dssp EETTTTEE-S-BS-HHHHHHHHHHHHH-----HHHHHHHHH--HHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHH
T ss_pred ccccccCCcCCcccHHHHHHHHHHHHH-----HHHhhcCCc--cccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHH
Confidence 11121121 21 00000 134565532 211221 22445443 223345599999999999
Q ss_pred HhhhhcccceeEEEecccC
Q 012883 402 FDDLFVAGLICAVEIGLGP 420 (454)
Q Consensus 402 F~d~l~~g~I~eI~VGLGP 420 (454)
.+.... ++.|| ||
T Consensus 190 iK~~~p-----~~~vG-Gp 202 (486)
T PF01229_consen 190 IKAVDP-----ELKVG-GP 202 (486)
T ss_dssp HHHH-T-----TSEEE-EE
T ss_pred HHHhCC-----CCccc-Cc
Confidence 888754 34566 66
No 89
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=59.21 E-value=18 Score=36.23 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=46.8
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEE--eec
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMA--FHE 331 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMS--FHq 331 (454)
+++|.-....++..++|+ .|+-.|++|||=|--....|-.| .+. ..+++.+.|++...+ .-+||| -|.
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 101 (258)
T cd08625 23 AGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENHV 101 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 356777777888888886 79999999999884211223332 222 368999999997776 445555 475
No 90
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=58.68 E-value=16 Score=37.49 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCcceEEEe-eeeee-eec--------C--CCcc-ccchHHHHHHHHHHHcCCceEEEEEeeccCCC
Q 012883 269 PELIRQEISHMKALNVDGVIVN-CWWGI-VEG--------W--NPQK-YAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVD-VWWGi-VE~--------~--~P~q-YdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGN 335 (454)
.++++..+++|..+|++-|-+| ..|.. +.. . .+.. -+| |.++++.+-+ |++--..+++|-|-||
T Consensus 169 A~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~n~~~~-~~p~d~~v~~HiC~Gn 245 (368)
T PRK06520 169 AKTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARI--YARVLNKALA-GKPADLTIGLHVCRGN 245 (368)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHH--HHHHHHHHHh-CCCCCcEEEEEeecCC
Confidence 3678899999999999999997 45553 110 0 1111 123 5566655554 6665667899999888
Q ss_pred CCCCcccc------cchHHHhhhcCCCCeEEecCCCCc--cCceeeeec--Cccc---ccCCCchhHhhHHHHHHHHHHH
Q 012883 336 DSGDAWIS------LPQWVMEIGKGNQDIFFTDREGRR--NTECLSWGV--DKER---VLNGRTGIEVYFDFMRSFRTEF 402 (454)
Q Consensus 336 VGD~~~IP------LP~WV~e~g~~npDIfyTDrsG~R--n~EcLSlgv--D~~p---VL~GRTpiq~Y~DFMrSFr~~F 402 (454)
.......+ +|.=+ .+.+.|.||.+=...| ..|-|.+.- ++.- |+.-++|.=.-.|-++.=-.++
T Consensus 246 ~~~~~~~~~~y~~i~~~L~---~~~~vd~~~lE~~~~r~g~~e~L~~l~~~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a 322 (368)
T PRK06520 246 FRSTWISEGGYEPVAETLF---GGVNVDAFFLEYDNERAGGFEPLRFIPPGHQQVVLGLITTKNGELENADDVKARLAEA 322 (368)
T ss_pred CCCccccccchhHHHHHHH---hhcCCCeEEEEeccCCCCCcchHHHhhhcCCEEEeeEEeCCCCCCCCHHHHHHHHHHH
Confidence 64221111 12211 2456676664333222 113233211 2211 2345676655556666656666
Q ss_pred hhhhc
Q 012883 403 DDLFV 407 (454)
Q Consensus 403 ~d~l~ 407 (454)
.+|++
T Consensus 323 ~~~v~ 327 (368)
T PRK06520 323 AKFVP 327 (368)
T ss_pred HHhCC
Confidence 66653
No 91
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=58.52 E-value=21 Score=36.00 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=46.1
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEE--eec
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMA--FHE 331 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMS--FHq 331 (454)
++|......+...++|+ .|+-.|++|||=|--....|-.| .+. ..+++++.|++...+ .-+||| -|.
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~ePvV~HG~tlts~i~f~dv~~~I~~~AF~~s~yPvIlslE~Hc 101 (261)
T cd08624 24 GQFSGLSSPEMYRQVLL-SGCRCVELDCWKGKPPDEEPIITHGFTMTTEILFKDAIEAIAESAFKTSPYPVILSFENHV 101 (261)
T ss_pred CccCCccCHHHHHHHHH-cCCcEEEEEecCCCCCCCCCEEeeCCCcccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 56666677788888887 79999999999883211123322 222 268999999998775 455666 475
No 92
>PLN02808 alpha-galactosidase
Probab=58.40 E-value=18 Score=38.07 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHH-----HHhcCcceEEEeeeeeeeecCCCc-------cccchHHHHHHHHHHHcCCceEEEE
Q 012883 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWNPQ-------KYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 267 ~~~~al~a~L~a-----LK~~GVdGVmVDVWWGiVE~~~P~-------qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
.+.+.|.....+ ||.+|.+-|.||.=|-..++...+ +|- +|-+.|++.|.+.|||+=.=.
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP-~G~~~lad~iH~~GlkfGiy~ 117 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFP-SGIKALADYVHSKGLKLGIYS 117 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcC-ccHHHHHHHHHHCCCceEEEe
Confidence 366777777777 699999999998666544443323 232 689999999999999986533
No 93
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=58.36 E-value=23 Score=38.70 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=41.2
Q ss_pred CHHHHHHHH-HHHHhcCcceEEE-eeeeeeeecCCCccccch-----------------HHHHHHHHHHHcCCceEEEEE
Q 012883 268 DPELIRQEI-SHMKALNVDGVIV-NCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVVMA 328 (454)
Q Consensus 268 ~~~al~a~L-~aLK~~GVdGVmV-DVWWGiVE~~~P~qYdWS-----------------gY~~Lf~mir~~GLKlqvVMS 328 (454)
+.++|...| ..||.+||+.|.+ +|..- |...+|- ..++|++.+.+.|+||..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 357888886 9999999999998 66421 2222232 378999999999999876666
Q ss_pred e
Q 012883 329 F 329 (454)
Q Consensus 329 F 329 (454)
|
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 5
No 94
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=57.82 E-value=22 Score=35.80 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=45.4
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---ch---HHHHHHHHHHHcCCc---eEEEEEe
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WS---gY~~Lf~mir~~GLK---lqvVMSF 329 (454)
+++|......+...++|+ .|+-.|++|||=|--+...|-.|- +. ..+++.+.|++...+ .-||||+
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~~~~eP~V~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlsl 97 (257)
T cd08626 23 GRQFGGKSSVEMYRQVLL-AGCRCIELDCWDGKGEDQEPIITHGKAMCTDILFKDVIQAIKDTAFVTSDYPVILSF 97 (257)
T ss_pred CCcccCCccHHHHHHHHH-cCCcEEEEEecCCCCCCCCCEEeeCCCCccCcCHHHHHHHHHHHhcccCCCCEEEEE
Confidence 356776777888888885 799999999998842222233221 11 368899999988876 4556663
No 95
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=57.65 E-value=21 Score=35.79 Aligned_cols=63 Identities=25% Similarity=0.467 Sum_probs=43.7
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---c---hHHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---W---SGYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---W---SgY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|......+...++|+ .|+-.|++|||=| +...|-.|- + =..+++.+.|++.+.+ .-+|||+
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg--~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~~s~yPvIlsl 95 (257)
T cd08593 24 DQLKGPSSTEAYIRALK-KGCRCVELDCWDG--PDGEPIIYHGHTLTSKILFKDVIQAIREYAFKVSPYPVILSL 95 (257)
T ss_pred CcccCCccHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 55666667777777777 7999999999988 222233322 1 2358999999998865 5566665
No 96
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=57.61 E-value=20 Score=35.98 Aligned_cols=66 Identities=20% Similarity=0.406 Sum_probs=43.5
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc-cch-----HHHHHHHHHHHcCCc---eEEEEE--eecc
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-AWS-----GYRELFNIIREFNLK---VQVVMA--FHEY 332 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY-dWS-----gY~~Lf~mir~~GLK---lqvVMS--FHqC 332 (454)
++|.....+++-.++|+ .|+..|++|||=|- ...|-.| +|. ..+++++.|++.+.+ .-+||| -|.+
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~--~gepvV~Hg~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc~ 100 (260)
T cd08597 24 DQLRGPSSVEGYVRALQ-RGCRCVELDCWDGP--NGEPVIYHGHTLTSKISFRSVIEAINEYAFVASEYPLILCIENHCS 100 (260)
T ss_pred CeecCccCHHHHHHHHH-hCCCEEEEEeEcCC--CCCEEEEeCCccccceEHHHHHHHHHHHhccCCCCCEEEEEecCCC
Confidence 45666666677777775 89999999999872 1112222 223 578999999998776 345555 4643
No 97
>PRK04326 methionine synthase; Provisional
Probab=57.52 E-value=19 Score=35.55 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHH
Q 012883 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 348 (454)
+++...+++|+.+|++.|.+|= -|.. .+.. |.-+.+.++.+-+ +++..+ ..|-|.||.. |-|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~~--~~~~~~~l~~~~~-~~~~~v--~lH~C~G~~~-------~~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPED--VEIAVEALNRIVK-GINAKL--GLHVCYGDYS-------RIA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHHH--HHHHHHHHHHHHh-CCCCEE--EEEEeCCCcH-------HHH-
Confidence 6778889999999999999884 2322 2333 3445555555544 445443 4699987753 112
Q ss_pred HhhhcCCCCeEEecCC
Q 012883 349 MEIGKGNQDIFFTDRE 364 (454)
Q Consensus 349 ~e~g~~npDIfyTDrs 364 (454)
-...+.+.|.+.-|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1123455676666554
No 98
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=57.28 E-value=19 Score=37.55 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCcceEEEeeee-eeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCC
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWW-GIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWW-GiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGN 335 (454)
+.....|++.-.+|+|.|.+.=-| |........+|.+.+=+++++-+++.+-+ .+|+ |-|+|.
T Consensus 189 d~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii--~f~~ga 252 (352)
T COG0407 189 DAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVI--HFCKGA 252 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEE--EECCCc
Confidence 344456667778999999885555 45555568899999999999999988776 4454 667754
No 99
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=57.10 E-value=26 Score=36.72 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---c-------------------chHHHHHHHHHHHcCCceEE
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---A-------------------WSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---d-------------------WSgY~~Lf~mir~~GLKlqv 325 (454)
.++.|...|..||.+||++|-+--.+--........| | ...+++|++.+.+.|+||.+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 4788999999999999999977543221111011223 2 23478999999999999998
Q ss_pred EEEeeccCC
Q 012883 326 VMAFHEYGA 334 (454)
Q Consensus 326 VMSFHqCGG 334 (454)
=+-|--|++
T Consensus 100 D~V~NH~~~ 108 (479)
T PRK09441 100 DVVLNHKAG 108 (479)
T ss_pred EECcccccC
Confidence 888877765
No 100
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=56.59 E-value=50 Score=35.33 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCC-Ccccc-------------chHHHHHHHHHHHcCCceEEEEEeec
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~-P~qYd-------------WSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.-|-+.|.+.|..||++||++|-+--. .|..+ ...|+ +..+++|++.+.+.|+||..=+-|.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 467799999999999999999966432 23211 23333 45688999999999999998888877
Q ss_pred cCC
Q 012883 332 YGA 334 (454)
Q Consensus 332 CGG 334 (454)
++.
T Consensus 101 ~s~ 103 (539)
T TIGR02456 101 TSD 103 (539)
T ss_pred CCC
Confidence 753
No 101
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.56 E-value=36 Score=33.80 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=45.3
Q ss_pred ecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCC---ccccchHHHHHHHHHHHcCCceEE
Q 012883 260 INNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNP---QKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 260 V~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P---~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
|.-=|.+.+.+++...-+.||++|+.-|.+-.|= =+.+| +.+...+|+.|.+.+++.||.+-.
T Consensus 31 iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 31 IAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred EEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE
Confidence 3333667899999999999999999977666552 11112 222256899999999999987644
No 102
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=56.47 E-value=28 Score=37.59 Aligned_cols=61 Identities=11% Similarity=0.331 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccch-----------------HHHHHHHHHHHcCCceEEEEEee
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWS-----------------gY~~Lf~mir~~GLKlqvVMSFH 330 (454)
+.++|...|..||++||++|.+-= |.| .+..++|. .+++|++.+.+.|++|..=+-|.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 458899999999999999996521 122 23445564 37999999999999988766675
Q ss_pred ccC
Q 012883 331 EYG 333 (454)
Q Consensus 331 qCG 333 (454)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 465
No 103
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=56.27 E-value=29 Score=35.37 Aligned_cols=60 Identities=10% Similarity=0.245 Sum_probs=42.0
Q ss_pred ccCHHHHHHHHHHHHhc--CcceEEEeeeeeeeecCCCccccch-----HHHHHHHHHHHcCCceEEEEEe
Q 012883 266 LVDPELIRQEISHMKAL--NVDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~--GVdGVmVDVWWGiVE~~~P~qYdWS-----gY~~Lf~mir~~GLKlqvVMSF 329 (454)
..+.+.+.+-++.+++. -+|++.+|.||+- .-+.|.|. .-+++++.+++.|+|+...+.=
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P 105 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHP 105 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEES
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeccccccc----cccccccccccccchHHHHHhHhhCCcEEEEEeec
Confidence 35678888888888875 4799999999985 23355554 5799999999999996655543
No 104
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=55.26 E-value=1.1e+02 Score=27.72 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
+..-|+.++++||+.+.+--.+ +..+..+.+++++. .++.+.+.||
T Consensus 17 ~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 17 RDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 4677888899999998876322 12456677888888 7788888899
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=55.12 E-value=34 Score=37.03 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=46.8
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEE-eeeeeeeecCCCccc-------------cchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 266 LVDPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmV-DVWWGiVE~~~P~qY-------------dWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.-|.+++.+.|..||.+||++|-+ +++..- .....| ....+++|++.+.+.|+||..=+-|--
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~---~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVSP---QVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCCC---CCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 457799999999999999999965 443110 001123 234689999999999999987777665
Q ss_pred cC
Q 012883 332 YG 333 (454)
Q Consensus 332 CG 333 (454)
|+
T Consensus 106 ~s 107 (551)
T PRK10933 106 TS 107 (551)
T ss_pred cc
Confidence 55
No 106
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=54.80 E-value=43 Score=38.20 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHHHH----HHHHHcCCceEEEEEeeccCCCCCCCcccc
Q 012883 269 PELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELF----NIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~Lf----~mir~~GLKlqvVMSFHqCGGNVGD~~~IP 343 (454)
..+++..+++|..+|+.-|-||- -| .|...-...+|..|.+.+ .++. .|++-..-+++|-|-||..+
T Consensus 585 A~alr~Ev~~L~~aG~~~IQIDEPal--~e~~~~~~~~~~~~l~~av~af~~~~-~~v~~~~~I~~H~C~gnf~~----- 656 (766)
T PLN02475 585 ALAIKDEVEDLEKAGITVIQIDEAAL--REGLPLRKSEHAFYLDWAVHSFRITN-CGVQDTTQIHTHMCYSNFND----- 656 (766)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCcch--hhcCCcCccCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEEecCCcHH-----
Confidence 35788889999999999999984 33 233223346777777665 4433 45644555778999989654
Q ss_pred cchHHHh-hhcCCCCeEEecCCCCccCceee-----eecCccc---ccCCCchhHhhHHHHHHHHHHHhhhhc
Q 012883 344 LPQWVME-IGKGNQDIFFTDREGRRNTECLS-----WGVDKER---VLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (454)
Q Consensus 344 LP~WV~e-~g~~npDIfyTDrsG~Rn~EcLS-----lgvD~~p---VL~GRTpiq~Y~DFMrSFr~~F~d~l~ 407 (454)
|.+ +.+-+-|.|+.|-+ +.+.|-|. +..++.- |+.-++|-=.-.|-|..=-.++.++++
T Consensus 657 ----I~~~i~~l~~D~~~~E~~-rs~~~~l~~l~~~~~~~~~IglGViD~~s~~ves~Eei~~rI~~a~~~v~ 724 (766)
T PLN02475 657 ----IIHSIIDMDADVITIENS-RSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 724 (766)
T ss_pred ----HHHHHHhCCCCEEEEEcC-CCChhhhHHHHhhcCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 222 34577887776644 22222221 1112211 234466665556666666666666664
No 107
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=54.54 E-value=25 Score=36.91 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeee-ee----------eecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCC
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWW-GI----------VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWW-Gi----------VE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGN 335 (454)
.+.+.|.+.+.++|.+|++-+.||-=| +. -+. .+.+|= +|-+.|++-|++.|||.=.=+..=.++
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v~-- 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMVS-- 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EEEEEEETTEEE--
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeEEEEecccccc--
Confidence 367889999999999999999998644 32 221 123332 589999999999999987766544332
Q ss_pred CCCCcccccchHHHh
Q 012883 336 DSGDAWISLPQWVME 350 (454)
Q Consensus 336 VGD~~~IPLP~WV~e 350 (454)
.+-...---|.|++.
T Consensus 131 ~~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 131 PDSDLYREHPDWVLR 145 (394)
T ss_dssp SSSCHCCSSBGGBTC
T ss_pred chhHHHHhCccceee
Confidence 222333446999875
No 108
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=54.51 E-value=24 Score=37.94 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
+.+.|....+.++++|+.+||||+.|| |++-+.|.+.+++.+|-|+.=-+||.
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~g 276 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGHA 276 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccce
Confidence 379999999999999999999998776 55677777777788887776666663
No 109
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=53.97 E-value=28 Score=33.83 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEE--eeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmV--DVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
...+||++..--..+ +..-...++.+++|+|+||+ +.|+..-+.+ -..+|+++++.+ ++.+
T Consensus 65 ~~~~~vi~gv~~~s~---------~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~-----i~~~~~~i~~~~---~~pi 127 (285)
T TIGR00674 65 NGRVPVIAGTGSNAT---------EEAISLTKFAEDVGADGFLVVTPYYNKPTQEG-----LYQHFKAIAEEV---DLPI 127 (285)
T ss_pred CCCCeEEEeCCCccH---------HHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHH-----HHHHHHHHHhcC---CCCE
Q ss_pred EEEEEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCC--CccCceeeeecCcccccCC
Q 012883 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREG--RRNTECLSWGVDKERVLNG 384 (454)
Q Consensus 324 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG--~Rn~EcLSlgvD~~pVL~G 384 (454)
++--+-++-|+ .|+.-+++.-.++|. +.++|.+| .+-.+++...-+++.||.|
T Consensus 128 -~lYn~P~~tg~-------~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G 183 (285)
T TIGR00674 128 -ILYNVPSRTGV-------SLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAPDDFVVLSG 183 (285)
T ss_pred -EEEECcHHhcC-------CCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC
No 110
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=53.11 E-value=43 Score=36.07 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecC-CCccc-------------cchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~-~P~qY-------------dWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.-+-+++...|..||.+||++|-+---. +.. ....| ....+++|++.+.+.|+||..=+-|.-
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~---~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH 99 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFY---VSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNH 99 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcc---cCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 4567999999999999999999664322 211 11234 345689999999999999998888877
Q ss_pred cC
Q 012883 332 YG 333 (454)
Q Consensus 332 CG 333 (454)
|+
T Consensus 100 ~~ 101 (543)
T TIGR02403 100 TS 101 (543)
T ss_pred cc
Confidence 76
No 111
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=52.52 E-value=24 Score=33.00 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=56.1
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccch
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~ 346 (454)
.+...+..+++.+..+|+++|.+-+.+|-. +..+.+.-.+++.+++++.|+|+.+ -.|-=|-.+|+. +-.
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~ii--e~~~~g~~~~~~----~~~ 142 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPLIA--WMYPRGPAVKNE----KDP 142 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCEEE--EEeccCCcccCc----cCH
Confidence 345677778899999999999999998833 2355666788888888999999755 334334444442 222
Q ss_pred HHHh-----hhcCCCCeEEec
Q 012883 347 WVME-----IGKGNQDIFFTD 362 (454)
Q Consensus 347 WV~e-----~g~~npDIfyTD 362 (454)
...+ ..+.-.|+..+.
T Consensus 143 ~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 143 DLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEec
Confidence 2222 234456776664
No 112
>PRK15452 putative protease; Provisional
Probab=52.08 E-value=16 Score=38.78 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=33.5
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeee
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIV 296 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiV 296 (454)
..+++|||.+|.-+ .+ .+-+.+...|+.|+.+|||||+|-= +|++
T Consensus 57 ~~g~kvyvt~n~i~--~e---~el~~~~~~l~~l~~~gvDgvIV~d-~G~l 101 (443)
T PRK15452 57 ALGKKFYVVVNIAP--HN---AKLKTFIRDLEPVIAMKPDALIMSD-PGLI 101 (443)
T ss_pred HcCCEEEEEecCcC--CH---HHHHHHHHHHHHHHhCCCCEEEEcC-HHHH
Confidence 35789999998433 22 2347788889999999999999865 5543
No 113
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=51.19 E-value=29 Score=37.58 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
+.+.|....+.++++|..+||||+++. -|++-+.|.+.+++.+|-|+.=-+||.
T Consensus 246 ~~~em~~ra~~a~e~G~~~~mv~~~~~----------G~~al~~l~~~~~~~~l~IhaHrA~~g 299 (475)
T CHL00040 246 TCEEMYKRAVFARELGVPIVMHDYLTG----------GFTANTSLAHYCRDNGLLLHIHRAMHA 299 (475)
T ss_pred CHHHHHHHHHHHHHcCCceEEEecccc----------ccchHHHHHHHhhhcCceEEecccccc
Confidence 579999999999999999999999885 477788888888888877776666663
No 114
>PLN02229 alpha-galactosidase
Probab=51.04 E-value=41 Score=36.16 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHH-----HHhcCcceEEEeeeeeeeecCC-------CccccchHHHHHHHHHHHcCCceEEEEE--eecc
Q 012883 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWN-------PQKYAWSGYRELFNIIREFNLKVQVVMA--FHEY 332 (454)
Q Consensus 267 ~~~~al~a~L~a-----LK~~GVdGVmVDVWWGiVE~~~-------P~qYdWSgY~~Lf~mir~~GLKlqvVMS--FHqC 332 (454)
.+.+.|+....+ ||.+|.+-|.||.=|--.++.. |.+|- +|-+.|++.|.+.|||+=.=.. ...|
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCccc
Confidence 366777777777 5999999999987443222221 33444 6899999999999999765332 4567
Q ss_pred CCCCC
Q 012883 333 GANDS 337 (454)
Q Consensus 333 GGNVG 337 (454)
+|+.|
T Consensus 156 ~~~pG 160 (427)
T PLN02229 156 QVRPG 160 (427)
T ss_pred CCCCC
Confidence 76655
No 115
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=50.88 E-value=46 Score=31.33 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCC----ccccchHHHHHHHHHHHcCCceEEEEEeecc
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNP----QKYAWSGYRELFNIIREFNLKVQVVMAFHEY 332 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P----~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqC 332 (454)
...++.-.+.++..|+. |++-.++.+.- .++ .+-.+..+++.++++++.|-+ ++.+|..
T Consensus 44 ~~~~~~l~~~~~~~gl~-ls~h~p~~~nl-~s~d~~~r~~~~~~l~~~i~~A~~lGa~---~vv~h~g 106 (273)
T smart00518 44 EETAEKFKEALKENNID-VSVHAPYLINL-ASPDKEKVEKSIERLIDEIKRCEELGIK---ALVFHPG 106 (273)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCceecC-CCCCHHHHHHHHHHHHHHHHHHHHcCCC---EEEEccc
Confidence 34455545555677876 44433332211 122 223355788888888888887 4888854
No 116
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=50.66 E-value=54 Score=37.10 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCcceEEEee--eeeeeecCCCccccchHHHHHH-HHHHHc--CCceEEEEEeeccCCCCCCCccccc
Q 012883 270 ELIRQEISHMKALNVDGVIVNC--WWGIVEGWNPQKYAWSGYRELF-NIIREF--NLKVQVVMAFHEYGANDSGDAWISL 344 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDV--WWGiVE~~~P~qYdWSgY~~Lf-~mir~~--GLKlqvVMSFHqCGGNVGD~~~IPL 344 (454)
.+++..++.|.++|++-|-+|- | +|.-.-..-+|..|.+.+ +.++.+ |++--.-+.+|-|-||+++ +
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL---~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~-----i 646 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPAL---REGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNE-----I 646 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchh---hhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHH-----H
Confidence 5678889999999999999983 4 232211223565554433 333331 5532233478999988762 1
Q ss_pred chHHHhhhcCCCCeEEecC
Q 012883 345 PQWVMEIGKGNQDIFFTDR 363 (454)
Q Consensus 345 P~WV~e~g~~npDIfyTDr 363 (454)
=.++ .+.+.|.++.|-
T Consensus 647 ~~~l---~~l~vD~i~lE~ 662 (750)
T TIGR01371 647 IESI---ADLDADVISIEA 662 (750)
T ss_pred HHHH---HhCCCCEEEEEe
Confidence 1233 356678777663
No 117
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=50.59 E-value=47 Score=34.48 Aligned_cols=71 Identities=14% Similarity=0.144 Sum_probs=49.1
Q ss_pred CccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 248 ~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
+-|+++..| |.+.+.+.+...-+.||.+||.-+--=.|==-.-..+-+.+.+.+|+.|++.+++.||.+-.
T Consensus 117 ~~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t 187 (360)
T PRK12595 117 GNQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS 187 (360)
T ss_pred CCeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 345566666 56788899999999999999876663332211111223455678899999999999998654
No 118
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=50.45 E-value=1.2e+02 Score=27.43 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=64.1
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeecc-CCCCCCCcccccc
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEY-GANDSGDAWISLP 345 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqC-GGNVGD~~~IPLP 345 (454)
.+.+.....|+.+.+.|+|||-+-.+-. +....+++.+++.|++ |+.|+.- -.+....+.+..-
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~------------~~~~~~l~~~~~~gIp---vv~~d~~~~~~~~~~~~v~~d 103 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPVDP------------DSLAPFLEKAKAAGIP---VVTVDSDEAPDSPRAAYVGTD 103 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESSST------------TTTHHHHHHHHHTTSE---EEEESSTHHTTSTSSEEEEE-
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCH------------HHHHHHHHHHhhcCce---EEEEeccccccccceeeeecc
Confidence 5678888999999999999998755432 2355888999999994 4445533 1111111111111
Q ss_pred hHHHhhhcCCCCeEEecCCCCccCceee-eec--CcccccCCCchhHhhHHHHHHHHHHHhhh
Q 012883 346 QWVMEIGKGNQDIFFTDREGRRNTECLS-WGV--DKERVLNGRTGIEVYFDFMRSFRTEFDDL 405 (454)
Q Consensus 346 ~WV~e~g~~npDIfyTDrsG~Rn~EcLS-lgv--D~~pVL~GRTpiq~Y~DFMrSFr~~F~d~ 405 (454)
.. +.|..--|+|. ..- .++-++.|........+.++.|++.|+++
T Consensus 104 ~~---------------~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~ 151 (257)
T PF13407_consen 104 NY---------------EAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEY 151 (257)
T ss_dssp HH---------------HHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHC
T ss_pred HH---------------HHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhc
Confidence 00 11222223332 111 23334566666777788999999999983
No 119
>PLN00196 alpha-amylase; Provisional
Probab=50.41 E-value=51 Score=34.87 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccc--------------hHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW--------------SGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdW--------------SgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
..+.|...|..||++||+.|-+.= +.++.+...|+- ..+++|++.+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P---~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPP---PSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 578899999999999999997764 234444444532 258999999999999998766665555
Q ss_pred C
Q 012883 334 A 334 (454)
Q Consensus 334 G 334 (454)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 3
No 120
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=50.40 E-value=65 Score=28.79 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=44.5
Q ss_pred CCccEEEEeecceecCCc-cccC---HHHH-HHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCC
Q 012883 247 PYIPVYVMLANHVINNFC-QLVD---PELI-RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNL 321 (454)
Q Consensus 247 ~~VpVyVMLPLdvV~~~~-~l~~---~~al-~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GL 321 (454)
++++|.+++--..-.... .+.+ .+.| ++-++.++..|.|||.+|..|.-.+.. -++..|.++++.+|+.==
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~l~ 138 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSALG 138 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHHhc
Confidence 567766666432211100 1222 2333 455567788999999999765432211 246778888888877511
Q ss_pred --ceEEEEEee
Q 012883 322 --KVQVVMAFH 330 (454)
Q Consensus 322 --KlqvVMSFH 330 (454)
++...++.+
T Consensus 139 ~~~~~ls~a~~ 149 (210)
T cd00598 139 AANYLLTIAVP 149 (210)
T ss_pred ccCcEEEEEec
Confidence 244444444
No 121
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=50.10 E-value=15 Score=36.36 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCcceEEEeeeeee-eecC--------CCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 273 RQEISHMKALNVDGVIVNCWWGI-VEGW--------NPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGi-VE~~--------~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
...|+.||.+|++-|- |. +|.- .|.+..|..|.+.++.++++|+++-.-|
T Consensus 143 ~e~l~~Lk~aG~~~~~-----~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 143 REVLERLKEAGLDSIP-----GGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHcCCCcCC-----CCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 7889999999998663 31 2321 2667789999999999999999865433
No 122
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=50.05 E-value=28 Score=37.03 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
+.+.|....+.++++|+.+||||++|. -|+.-+.|.+.+++.+|-|+.=-+||.
T Consensus 222 ~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~Hra~~g 275 (412)
T TIGR03326 222 PVREMERRAELVADLGGQYVMVDVVVC----------GWSALQYIRELTEDLGLAIHAHRAMHA 275 (412)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeecc----------chHHHHHHHHhhccCCeEEEEcCCccc
Confidence 358899999999999999999999886 466666666666677777666555663
No 123
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=49.90 E-value=11 Score=35.76 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=17.4
Q ss_pred cccchHHHHHHHHHHHcCCceEEE
Q 012883 303 KYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 303 qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
.|+|+.|+.|++.+|+.|+++.+.
T Consensus 85 ~~~~~~Y~pl~~~Ar~~~ipviA~ 108 (213)
T PF04187_consen 85 PNDWALYRPLVEFARENGIPVIAL 108 (213)
T ss_dssp ---GGGTHHHHHHHHTSS--EEEE
T ss_pred CCchHHHHHHHHHHHHCCCCEEEe
Confidence 368999999999999999988754
No 124
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=49.74 E-value=12 Score=35.37 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
..+.+....+|+|+|.+=++||..... ...+...--.++.+.|++.|||+.+-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 577888899999999999999877653 34444445555666666668887655
No 125
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=49.70 E-value=62 Score=35.85 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=61.6
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCC--ccccch---HHHHHHHHHHHcCCceEEEEEeeccCCCCCCCc
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNP--QKYAWS---GYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P--~qYdWS---gY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~ 340 (454)
+...-..+..++-||.+||++--.-+-|.-+=+.|. +..|.. +|+.|.+...+.|++-.|-| ||-
T Consensus 87 ~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fHw--------- 156 (524)
T KOG0626|consen 87 VDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FHW--------- 156 (524)
T ss_pred chhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ecC---------
Confidence 344567888999999999999999999998888777 457765 49999999999999988887 673
Q ss_pred ccccchHHHh
Q 012883 341 WISLPQWVME 350 (454)
Q Consensus 341 ~IPLP~WV~e 350 (454)
-||+|+.+
T Consensus 157 --DlPq~LeD 164 (524)
T KOG0626|consen 157 --DLPQALED 164 (524)
T ss_pred --CCCHHHHH
Confidence 69999976
No 126
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=49.46 E-value=40 Score=36.69 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCcceEEE-ee---------------eeeeeec--CCC-ccc---------cchHHHHHHHHHHHcC
Q 012883 269 PELIRQEISHMKALNVDGVIV-NC---------------WWGIVEG--WNP-QKY---------AWSGYRELFNIIREFN 320 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmV-DV---------------WWGiVE~--~~P-~qY---------dWSgY~~Lf~mir~~G 320 (454)
...+...|..||++||..|.+ +| -||.-=. -.| ..| ....+++|++.+.+.|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 356778899999999999976 22 2553210 000 000 0356899999999999
Q ss_pred CceEEEEEe-eccC
Q 012883 321 LKVQVVMAF-HEYG 333 (454)
Q Consensus 321 LKlqvVMSF-HqCG 333 (454)
++|..=+-| |-|+
T Consensus 243 i~VilDvV~NH~~~ 256 (605)
T TIGR02104 243 IRVIMDVVYNHTYS 256 (605)
T ss_pred CEEEEEEEcCCccC
Confidence 999888888 5543
No 127
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=49.17 E-value=30 Score=37.38 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeecc
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEY 332 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqC 332 (454)
.+.|....+.++++|..+||||+++. -|+.-..|.+.+++.+|-|+.=-++|..
T Consensus 240 ~~em~~ra~~~~e~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~IhaHrA~~ga 293 (468)
T PRK04208 240 MEEMYKRAEFAKELGSPIVMIDVVTA----------GWTALQSLREWCRDNGLALHAHRAMHAA 293 (468)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccc----------ccHHHHHHHHhhhcCCcEEEecCCcccc
Confidence 68999999999999999999999986 4777777888778888877777777743
No 128
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=48.90 E-value=34 Score=34.50 Aligned_cols=63 Identities=19% Similarity=0.424 Sum_probs=43.4
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---c---hHHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---W---SGYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---W---SgY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|.-....+...++|+ .|+-.|++|||=|- ...|-.|- + =..+++.+.|++.+.+ .-+|||+
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~--~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~s~yPvIlsl 95 (258)
T cd08630 24 SQIGGPSSTEAYVRAFA-QGCRCVELDCWEGP--GGEPVIYHGHTLTSKILFRDVIQAVRQHAFTASPYPVILSL 95 (258)
T ss_pred CcccCcccHHHHHHHHH-cCCcEEEEEeecCC--CCCcEEeeCCccccceEHHHHHHHHHHHhccCCCCCEEEEe
Confidence 56666667777778875 79999999999872 11233221 1 2358999999998776 4566664
No 129
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=48.72 E-value=17 Score=36.34 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCcceEEE---eeee-eeeecCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 273 RQEISHMKALNVDGVIV---NCWW-GIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmV---DVWW-GiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
...|++||++|++.|.. +..- .+-..-.|++..+..+.+.+++++++|+++-..|=|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 67899999999998751 1111 111122455667777899999999999998766654
No 130
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=48.60 E-value=22 Score=36.88 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCcceEEEe---ee-eeeeecCCCccccchHHHHHHHHHHHcCCceEEEEE
Q 012883 269 PELIRQEISHMKALNVDGVIVN---CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVD---VW-WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMS 328 (454)
+-.+...+++|+.+|.+||++. +| |+..+.+. . .-+.+|-+++++.||++..|..
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~--~---~~~~~lk~~L~~~GL~v~~v~~ 89 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER--D---QIVRRFKKALDETGLKVPMVTT 89 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH--H---HHHHHHHHHHHHhCCeEEEeec
Confidence 3456788899999999999863 11 33221110 0 1267899999999999877654
No 131
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=48.47 E-value=32 Score=34.10 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEE--eeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmV--DVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
...+||.+..-..+ +..-...+..+++|+|+||+ +.||..-+.. --.+|++|++-..
T Consensus 74 ~~~~pvi~gv~~~t----------~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~-----i~~~f~~va~~~~------ 132 (303)
T PRK03620 74 AGRVPVIAGAGGGT----------AQAIEYAQAAERAGADGILLLPPYLTEAPQEG-----LAAHVEAVCKSTD------ 132 (303)
T ss_pred CCCCcEEEecCCCH----------HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhCC------
Q ss_pred EEEEEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCCCccC--ceeeeecCcccccCC
Q 012883 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT--ECLSWGVDKERVLNG 384 (454)
Q Consensus 324 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG~Rn~--EcLSlgvD~~pVL~G 384 (454)
.+||-+|..| ..++ |.=+.+..++.|. +.++|.+|+... +++...-|+..||.|
T Consensus 133 lpi~lYn~~g------~~l~-~~~l~~L~~~~pni~giK~s~~d~~~~~~~~~~~~~~f~vl~G 189 (303)
T PRK03620 133 LGVIVYNRDN------AVLT-ADTLARLAERCPNLVGFKDGVGDIELMQRIVRALGDRLLYLGG 189 (303)
T ss_pred CCEEEEcCCC------CCCC-HHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcCCCeEEEeC
No 132
>PLN02417 dihydrodipicolinate synthase
Probab=48.37 E-value=85 Score=30.80 Aligned_cols=93 Identities=8% Similarity=0.001 Sum_probs=52.5
Q ss_pred CCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEe--eeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVN--CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 247 ~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVD--VWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
..+||.+..-- ++.+..-...++.+++|+|+||+= .|+-.- ++---.+|+++++ +.
T Consensus 69 ~~~pvi~gv~~---------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~-----~~~i~~~f~~va~----~~---- 126 (280)
T PLN02417 69 GKIKVIGNTGS---------NSTREAIHATEQGFAVGMHAALHINPYYGKTS-----QEGLIKHFETVLD----MG---- 126 (280)
T ss_pred CCCcEEEECCC---------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC-----HHHHHHHHHHHHh----hC----
Confidence 35777655321 233555666777899999999972 243211 1112223444444 33
Q ss_pred EEEEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCCC
Q 012883 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (454)
Q Consensus 325 vVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG~ 366 (454)
+||-+|. .+ ...+.|+..+++.-.++|. +-++|.+|+
T Consensus 127 pi~lYn~----P~-~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 127 PTIIYNV----PG-RTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred CEEEEEC----hh-HhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 6776652 11 2234566666665556787 567888875
No 133
>PRK08508 biotin synthase; Provisional
Probab=48.30 E-value=23 Score=34.75 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCC---Cc---cccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCc--cccc
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWN---PQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDA--WISL 344 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~---P~---qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~--~IPL 344 (454)
...|++||.+|+|.+-++ +|... |+ ..+|.-..+.++.++++|+++-.-|=+- .|++. -+-+
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~G-----lGEt~ed~~~~ 171 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFG-----LGESWEDRISF 171 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEe-----cCCCHHHHHHH
Confidence 678999999999999886 34311 11 3578888889999999998776544432 34432 2444
Q ss_pred chHHHhh
Q 012883 345 PQWVMEI 351 (454)
Q Consensus 345 P~WV~e~ 351 (454)
=.|+.+.
T Consensus 172 l~~lr~L 178 (279)
T PRK08508 172 LKSLASL 178 (279)
T ss_pred HHHHHcC
Confidence 4666554
No 134
>PRK07094 biotin synthase; Provisional
Probab=48.15 E-value=39 Score=33.08 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCC-------ccccchHHHHHHHHHHHcCCceEEEE
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P-------~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
...|+.||.+|++.|.+.+ |...+ ....|..+.+.++.++++|+++..-|
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl-----Es~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH-----ETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred HHHHHHHHHcCCCEEEecc-----ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceE
Confidence 4578899999999998644 43221 25788899999999999998754433
No 135
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=47.78 E-value=62 Score=31.29 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=45.3
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeec-CCC--ccccchHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WNP--QKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~-~~P--~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
+.+++.+++.++.++..|++.|-+=.=++..-. ..+ ..++-...+++++++++.|+++. .|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~----~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVA----AHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEE----EEeCC
Confidence 467899999999999999999965432221111 111 25667788999999999998754 58654
No 136
>PRK09875 putative hydrolase; Provisional
Probab=47.54 E-value=64 Score=32.54 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=47.5
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCccc
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~I 342 (454)
+..+.+.+.....|+.+|++|+.-| ||+= |..+ =..=..|.++.++.|+.|.+.=-||.-.
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T--------~~g~-GRd~~~l~~is~~tgv~Iv~~TG~y~~~--------- 87 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMT--------NRYM-GRNAQFMLDVMRETGINVVACTGYYQDA--------- 87 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecC--------CCcc-CcCHHHHHHHHHHhCCcEEEcCcCCCCc---------
Confidence 4467889999999999999999877 5542 2111 1124578888899996665554466321
Q ss_pred ccchHHHh
Q 012883 343 SLPQWVME 350 (454)
Q Consensus 343 PLP~WV~e 350 (454)
-+|.|+.+
T Consensus 88 ~~p~~~~~ 95 (292)
T PRK09875 88 FFPEHVAT 95 (292)
T ss_pred cCCHHHhc
Confidence 47899875
No 137
>PLN02692 alpha-galactosidase
Probab=47.50 E-value=34 Score=36.59 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=40.4
Q ss_pred CHHHHHHHHHH-----HHhcCcceEEEee-eeeeeecCC-------CccccchHHHHHHHHHHHcCCceEE
Q 012883 268 DPELIRQEISH-----MKALNVDGVIVNC-WWGIVEGWN-------PQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 268 ~~~al~a~L~a-----LK~~GVdGVmVDV-WWGiVE~~~-------P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
+.+.|.....+ ||.+|.+-|.||. |++.. +.. |.+|= +|-+.|++.|.+.|||+=.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-rd~~G~~~~d~~kFP-~G~k~ladyiH~~GLKfGI 139 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-RDEKGNLVPKKSTFP-SGIKALADYVHSKGLKLGI 139 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-CCCCCCeeeChhhcC-CcHHHHHHHHHHCCCceEE
Confidence 55666666554 5889999999987 55532 222 33333 7899999999999999765
No 138
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=47.48 E-value=41 Score=34.03 Aligned_cols=66 Identities=21% Similarity=0.419 Sum_probs=44.8
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc-ch-----HHHHHHHHHHHcCCc---eEEEEE--eecc
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-WS-----GYRELFNIIREFNLK---VQVVMA--FHEY 332 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd-WS-----gY~~Lf~mir~~GLK---lqvVMS--FHqC 332 (454)
++|.-....+...++|+ .|+-.|++|||=| +...|-.|- |+ ..+++++.|++...+ .-+||| -|.|
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~S~yPvIlsLE~Hcs 100 (258)
T cd08629 24 DQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCS 100 (258)
T ss_pred CccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeeccCC
Confidence 45666666777777877 7999999999988 222233322 12 478999999998776 345555 4643
No 139
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=47.21 E-value=85 Score=31.89 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=59.5
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
...+|+-+|.=...|- ...+++-++.+|++|||||.|. +--++=+ .++.+.++++||+...
T Consensus 92 ~~~~Pivlm~Y~Npi~-------~~Gie~F~~~~~~~GvdGlivp----------DLP~ee~--~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 92 GVKVPIVLMTYYNPIF-------NYGIEKFLRRAKEAGVDGLLVP----------DLPPEES--DELLKAAEKHGIDPIF 152 (265)
T ss_pred CCCCCEEEEEeccHHH-------HhhHHHHHHHHHHcCCCEEEeC----------CCChHHH--HHHHHHHHHcCCcEEE
Confidence 4678888887665543 3678888999999999999873 2223332 3678888899999988
Q ss_pred EEEeeccCCCCCCCcccccch-HHHhhhcCC-CCeEEecCCCC
Q 012883 326 VMAFHEYGANDSGDAWISLPQ-WVMEIGKGN-QDIFFTDREGR 366 (454)
Q Consensus 326 VMSFHqCGGNVGD~~~IPLP~-WV~e~g~~n-pDIfyTDrsG~ 366 (454)
+.+=- =|. |+-.+.+.- .-|+|-.+.|.
T Consensus 153 lvaPt-------------t~~~rl~~i~~~a~GFiY~vs~~Gv 182 (265)
T COG0159 153 LVAPT-------------TPDERLKKIAEAASGFIYYVSRMGV 182 (265)
T ss_pred EeCCC-------------CCHHHHHHHHHhCCCcEEEEecccc
Confidence 76522 243 444443332 34888888643
No 140
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=45.94 E-value=96 Score=30.11 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHHHHHHHHH-cCCceEEEEEeeccCC
Q 012883 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIRE-FNLKVQVVMAFHEYGA 334 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~Lf~mir~-~GLKlqvVMSFHqCGG 334 (454)
+.+...+++|+.+|++.|.+|= -|...-. + ..+.....+++++.+.+ .|-+ + ..|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~--~--~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD--V--EVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc--e--EEEECCC
Confidence 5677889999999999998862 3332211 1 35778888889888876 3222 2 4699996
No 141
>PRK12313 glycogen branching enzyme; Provisional
Probab=45.90 E-value=55 Score=35.84 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=43.8
Q ss_pred ccCHHHHHHHH-HHHHhcCcceEEE-eeeeeeeecCCCccccch-----------------HHHHHHHHHHHcCCceEEE
Q 012883 266 LVDPELIRQEI-SHMKALNVDGVIV-NCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 266 l~~~~al~a~L-~aLK~~GVdGVmV-DVWWGiVE~~~P~qYdWS-----------------gY~~Lf~mir~~GLKlqvV 326 (454)
.-+-+.+...| ..||++||+.|.+ +|+ | .|...+|. .+++|++.+.+.||||..=
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34557788775 9999999999985 332 2 23333343 4899999999999998776
Q ss_pred EEeeccC
Q 012883 327 MAFHEYG 333 (454)
Q Consensus 327 MSFHqCG 333 (454)
+-|--|+
T Consensus 240 ~V~nH~~ 246 (633)
T PRK12313 240 WVPGHFP 246 (633)
T ss_pred ECCCCCC
Confidence 6664444
No 142
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=45.65 E-value=30 Score=36.75 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.+.|....+.++++|...||||+++. -|+.-..|.+..++.+|-|+.=-+||.
T Consensus 210 ~~em~~ra~~a~e~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ihaHra~~g 262 (412)
T cd08213 210 VREMERRAELVADLGGKYVMIDVVVA----------GWSALQYLRDLAEDYGLAIHAHRAMHA 262 (412)
T ss_pred HHHHHHHHHHHHHhCCCeEEeecccc----------ChHHHHHHHHhccccCeEEEECCCcce
Confidence 58899999999999999999999886 477777777777677777776556663
No 143
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.57 E-value=57 Score=32.57 Aligned_cols=57 Identities=9% Similarity=0.271 Sum_probs=42.4
Q ss_pred cCHHHHHHHHHHHHhc--CcceEEEee-eeeeeecCCCc--cccch-----HHHHHHHHHHHcCCceEEEEE
Q 012883 267 VDPELIRQEISHMKAL--NVDGVIVNC-WWGIVEGWNPQ--KYAWS-----GYRELFNIIREFNLKVQVVMA 328 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~--GVdGVmVDV-WWGiVE~~~P~--qYdWS-----gY~~Lf~mir~~GLKlqvVMS 328 (454)
.+.+.+...++.+++. -+|.|.+|. ||+ ..+ .|+|. .-+++++-+++.|+|+.+++-
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-----~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP-----KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc-----CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4667788888888775 789999996 664 233 56565 467888888999998877653
No 144
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=44.83 E-value=5.5 Score=36.58 Aligned_cols=9 Identities=44% Similarity=0.745 Sum_probs=3.4
Q ss_pred HHHHhHHHH
Q 012883 73 EKERTKLRE 81 (454)
Q Consensus 73 erE~~k~RE 81 (454)
|||+.+.|+
T Consensus 36 erer~r~r~ 44 (137)
T PF12868_consen 36 ERERERRRH 44 (137)
T ss_pred hhccccccc
Confidence 333333333
No 145
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=44.82 E-value=36 Score=33.79 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=43.9
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcc---ccch---HHHHHHHHHHHcCCc---eEEEEEe
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWS---GYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~q---YdWS---gY~~Lf~mir~~GLK---lqvVMSF 329 (454)
+++|......+...++|+. |+-.|++|||=|- ...|-. +.+. ..+++++.|++...+ .-+|||+
T Consensus 23 g~Ql~~~ss~~~y~~aL~~-GcRcvElD~wdg~--~~ep~V~HG~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILsl 95 (231)
T cd08598 23 GRQLAGDSSVEGYIRALQR-GCRCVEIDVWDGD--DGEPVVTHGYTLTSSVPFRDVCRAIKKYAFVTSPYPLILSL 95 (231)
T ss_pred CCccCCccCHHHHHHHHHh-CCcEEEEEeecCC--CCCcEEeeCCCCcCceEHHHHHHHHHHHhccCCCCCEEEEE
Confidence 4566666677777777754 9999999999884 112332 2343 368899999999876 3455554
No 146
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=44.81 E-value=37 Score=36.16 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.+.|....+.++++|..+||||+++. -|+.-..|.+..++.+|-|+.=-++|.
T Consensus 212 ~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~HrA~~g 264 (414)
T cd08206 212 PEEMIKRAEFAKELGSVIVMVDGVTA----------GWTAIQSARRWCPDNGLALHAHRAGHA 264 (414)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeeecc----------cHHHHHHHHHhccccCeEEEEccccce
Confidence 68999999999999999999999876 456666666655566776666556663
No 147
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=44.78 E-value=1.3e+02 Score=29.52 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
...+||++..-.++ +......++.+++|+|+||+ -.---.+.+-.+..+.|.-|.++ .+ .+
T Consensus 67 ~~~~pvi~gv~~~t----------~~~i~~a~~a~~~Gad~v~~-------~pP~y~~~~~~~i~~~f~~v~~~-~~-~p 127 (289)
T cd00951 67 AGRVPVLAGAGYGT----------ATAIAYAQAAEKAGADGILL-------LPPYLTEAPQEGLYAHVEAVCKS-TD-LG 127 (289)
T ss_pred CCCCCEEEecCCCH----------HHHHHHHHHHHHhCCCEEEE-------CCCCCCCCCHHHHHHHHHHHHhc-CC-CC
Q ss_pred EEEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCCCccC--ceeeeecCcccccCC
Q 012883 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT--ECLSWGVDKERVLNG 384 (454)
Q Consensus 326 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG~Rn~--EcLSlgvD~~pVL~G 384 (454)
||-++..| ..|+ |.=+.+..+++|. +.++|.+|.-.. +++...-|++.||.|
T Consensus 128 i~lYn~~g------~~l~-~~~l~~L~~~~pnivgiKds~~d~~~~~~~~~~~~~~~~v~~G 182 (289)
T cd00951 128 VIVYNRAN------AVLT-ADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLGDRLLYLGG 182 (289)
T ss_pred EEEEeCCC------CCCC-HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEeC
No 148
>PRK07360 FO synthase subunit 2; Reviewed
Probab=44.73 E-value=38 Score=34.61 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeee-e--------cCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIV-E--------GWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiV-E--------~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
.+.+|+.||++|++.+- |.. | .-.|++-.+..|.+..+++++.||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 36789999999999993 211 1 11477778888999999999999998766655
No 149
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=44.19 E-value=55 Score=33.06 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=57.3
Q ss_pred CCccEEEEeec---ceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 247 PYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 247 ~~VpVyVMLPL---dvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
..+|||+|.== |.|-++ ...+.|...++..|.+|++||.+=+- ..+++.|=.--++|.+.+. ||-+
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~---~E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSD---DELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccCh---HHHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 67999999732 333333 24488999999999999999987553 3588999999999988876 6666
Q ss_pred EEEEEeeccC
Q 012883 324 QVVMAFHEYG 333 (454)
Q Consensus 324 qvVMSFHqCG 333 (454)
--=|+|-.|-
T Consensus 119 TFHrAFD~~~ 128 (241)
T COG3142 119 TFHRAFDECP 128 (241)
T ss_pred eeehhhhhcC
Confidence 5557777776
No 150
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=44.14 E-value=43 Score=34.75 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCcceEEEee---eeeeeecC-----CCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCC
Q 012883 270 ELIRQEISHMKALNVDGVIVNC---WWGIVEGW-----NPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAND 336 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDV---WWGiVE~~-----~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNV 336 (454)
+.+.+.|++|+..|+|||-+|+ ||=+.+.. ++.+-.=.-|.+|.+.+|.+.=-+.+| -|-|+++
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi---~qng~~l 197 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVI---PQNGAEL 197 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEE---ecccHhh
Confidence 5788999999999999998875 54433321 122222222999999999876545555 3555554
No 151
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=43.91 E-value=39 Score=35.93 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=35.7
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccch--HHHHHHHHHHHcCCceEEEEEee
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS--GYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWS--gY~~Lf~mir~~GLKlqvVMSFH 330 (454)
.|..+|++||+||.....- + |.-=.|+ .-+++-++|.++||+|-||=|+.
T Consensus 15 ~l~~irQ~G~~giV~al~~-~-----p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~p 66 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I-----PNGEVWEKEEIRKRKEYIESAGLHWSVVESVP 66 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C-----CCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4778899999999976521 1 1122454 35677789999999999987643
No 152
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=43.85 E-value=41 Score=32.90 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=53.4
Q ss_pred HHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCC------CCccCceeeeecCcccccCCCch
Q 012883 314 NIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDRE------GRRNTECLSWGVDKERVLNGRTG 387 (454)
Q Consensus 314 ~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrs------G~Rn~EcLSlgvD~~pVL~GRTp 387 (454)
.-|.+.+++ +||-.|..=-. .+....-||.||+++ -|||+|+.=+. .+|-.+ -+-.-|- .+---
T Consensus 73 ~rI~~~~~~--iivDtH~~IkT-P~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~D-~~r~Rd~----es~e~ 142 (189)
T COG2019 73 KRIAEMALE--IIVDTHATIKT-PAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLRD-SRRDRDV----ESVEE 142 (189)
T ss_pred HHHHHhhhc--eEEeccceecC-CCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhcc-ccccccc----ccHHH
Confidence 334445555 89999965322 335667799999985 68997774322 222221 1111111 11223
Q ss_pred hHhhHHHHHHHHHHHhhhhcccceeEE
Q 012883 388 IEVYFDFMRSFRTEFDDLFVAGLICAV 414 (454)
Q Consensus 388 iq~Y~DFMrSFr~~F~d~l~~g~I~eI 414 (454)
|+.-.++-|.|.-+.+-++++ ++.=|
T Consensus 143 i~eHqe~nR~aA~a~A~~~ga-tVkIV 168 (189)
T COG2019 143 IREHQEMNRAAAMAYAILLGA-TVKIV 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-eEEEE
Confidence 677788888888888888875 54433
No 153
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=43.80 E-value=26 Score=34.61 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeec--------CCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEG--------WNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~--------~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
.+..|+.||.+|++.+- -+-.|. -.|++..|..|.+.++.+++.|+++-.-|
T Consensus 106 ~~e~l~~LkeAGl~~i~----~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMP----GTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCC----CCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 46789999999998663 112332 23778899999999999999998876544
No 154
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=43.59 E-value=48 Score=29.83 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=62.4
Q ss_pred HHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHhhhcCC
Q 012883 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGN 355 (454)
Q Consensus 276 L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~n 355 (454)
..+||+.||+.|++=+.-|.- |.=..|..=.+.++++||++-+-.-++.| |..+. .--=+|+++...
T Consensus 12 w~~~k~~gi~fviikateG~~-------~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a--~~qA~~f~~~~~-- 78 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTS-------YVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA--EAQADYFLNQVK-- 78 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTT-------EE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH--HHHHHHHHHCTH--
T ss_pred HHHHHHCCCCEEEEEeeeCCC-------eecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH--HHHHHHHHHHhc--
Confidence 566799999999999976642 22234677778899999998766655554 32221 111234443221
Q ss_pred CCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhc
Q 012883 356 QDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (454)
Q Consensus 356 pDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~ 407 (454)
+. ..-.|-+++|-+--...........++++.|.++++...|
T Consensus 79 ---------~~-~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 79 ---------GG-DPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp ---------TS-STSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred ---------cc-CCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 11 1222234455442123345567888888889888866554
No 155
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=43.17 E-value=85 Score=31.01 Aligned_cols=97 Identities=6% Similarity=-0.092 Sum_probs=0.0
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEE--eeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmV--DVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
...+||++..--... +......++.+++|+||||+ +-|+...+.+ -..+|++|++...+.
T Consensus 68 ~~~~pvi~gv~~~~t---------~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~-----i~~yf~~v~~~~~~l---- 129 (290)
T TIGR00683 68 KDQIALIAQVGSVNL---------KEAVELGKYATELGYDCLSAVTPFYYKFSFPE-----IKHYYDTIIAETGGL---- 129 (290)
T ss_pred CCCCcEEEecCCCCH---------HHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHH-----HHHHHHHHHhhCCCC----
Q ss_pred EEEEEeeccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCCC
Q 012883 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (454)
Q Consensus 324 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG~ 366 (454)
+||=+|-=+ ...+.|+.-++..-.+.|. +.++|.+|.
T Consensus 130 -pv~lYn~P~-----~tg~~l~~~~i~~L~~~pnv~giK~s~~d 167 (290)
T TIGR00683 130 -NMIVYSIPF-----LTGVNMGIEQFGELYKNPKVLGVKFTAGD 167 (290)
T ss_pred -CEEEEeCcc-----ccccCcCHHHHHHHhcCCCEEEEEeCCCC
No 156
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=42.97 E-value=38 Score=34.19 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=46.7
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEEe--ec
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMAF--HE 331 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMSF--Hq 331 (454)
+++|......+...++|+ .|+-.|++|||=|--....|-.| .+. ..+++++.|++...+ .-+|||+ |.
T Consensus 23 g~Ql~g~ss~e~y~~aL~-~GcRcvElD~wdG~~~~~ePiV~HG~tlts~i~f~dv~~~I~~~AF~~S~yPvIlSlE~Hc 101 (258)
T cd08623 23 AGQLAGNSSVEMYRQVLL-SGCRCVELDCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAECAFKTSPFPILLSFENHV 101 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEeeCCCCCCCCCEEeeCCCcccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 356666677788888885 79999999999884211123322 222 268999999998876 4566665 75
No 157
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=42.88 E-value=48 Score=33.76 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCcceEEEe-eeeeeeecCCCc-cccchHHHHHHHHHHHcCCceEEEEEeeccCCCCC----C-----
Q 012883 270 ELIRQEISHMKALNVDGVIVN-CWWGIVEGWNPQ-KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS----G----- 338 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVD-VWWGiVE~~~P~-qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVG----D----- 338 (454)
++++..+++|..+|++-|-+| ..|.. .+. .-+| |.+.++.+-+ |++..+ ..|-|-||-+ |
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~----~~~~~~~~--~v~~~n~~~~-g~~~~v--~~HvC~G~~~~~~~~~~~~~ 226 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNV----FFDEVNDW--GVAALERAIE-GLKCET--AVHICYGYGIKANTDWKKTL 226 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhh----hhHHHHHH--HHHHHHHHHc-CCCCce--EEEEeCCCCCCCcccccccc
Confidence 577889999999999999998 34442 111 1233 6666666653 677654 4599987863 1
Q ss_pred ------CcccccchHHHhhhcCCCCeEEecCCCCc-cCceeeeecCcccc---cCCCchhHhhHHHHHHHHHHHhhhhc
Q 012883 339 ------DAWISLPQWVMEIGKGNQDIFFTDREGRR-NTECLSWGVDKERV---LNGRTGIEVYFDFMRSFRTEFDDLFV 407 (454)
Q Consensus 339 ------~~~IPLP~WV~e~g~~npDIfyTDrsG~R-n~EcLSlgvD~~pV---L~GRTpiq~Y~DFMrSFr~~F~d~l~ 407 (454)
-..| +|.. .+-+.|.|+.+=...| ..|-|.+..|+.-+ +.-++|.=.--|.++.=-.++.+|++
T Consensus 227 ~~~~g~y~~i-~~~l----~~~~vd~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~ 300 (339)
T PRK09121 227 GSEWRQYEEA-FPKL----QKSNIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVD 300 (339)
T ss_pred ccccccHHHH-HHHH----HhCCCCEEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 0011 2332 3567787776533333 22444433344222 34567665555555555556666653
No 158
>PRK03906 mannonate dehydratase; Provisional
Probab=42.87 E-value=38 Score=35.60 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=35.0
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
.|..+|++||+||.... ..-.......-..-+++-++|.++||+|-||=|+.
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~p 66 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVESVP 66 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47788999999999653 11101112233346677789999999999987643
No 159
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=42.80 E-value=29 Score=35.23 Aligned_cols=126 Identities=20% Similarity=0.198 Sum_probs=77.4
Q ss_pred CCCCCCccEEEEeecceecCCccccCHHHHHHHHHHHHh-cCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCC
Q 012883 243 FTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKA-LNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNL 321 (454)
Q Consensus 243 ~~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~-~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GL 321 (454)
++...+-..-||.||.--+.-++..+++.+...|++||- +--.||. |+||+-|=..-.-..--+-.+.|+.+|=
T Consensus 91 yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~g 165 (272)
T COG4130 91 YAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAGG 165 (272)
T ss_pred HHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhCC
Confidence 445678888999999875556778899999999999995 2333332 6788655444333444456777888775
Q ss_pred c--eEEEE-EeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCc------e-eeeecCccccc-CCCchhHh
Q 012883 322 K--VQVVM-AFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTE------C-LSWGVDKERVL-NGRTGIEV 390 (454)
Q Consensus 322 K--lqvVM-SFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~E------c-LSlgvD~~pVL-~GRTpiq~ 390 (454)
. ...|. .||-. | +| -++||-|..|-..-. - ..=+.|.-+|| .+.--++-
T Consensus 166 ~~~fklvhDTFHHh-----------L------ag---E~~ffpdlTGLVHiSgV~d~~~~~~dm~d~hRVlv~~~Drl~N 225 (272)
T COG4130 166 ERVFKLVHDTFHHH-----------L------AG---ETEFFPDLTGLVHISGVEDPRLDVEDMRDPHRVLVGEKDRLDN 225 (272)
T ss_pred Cceeeeehhhhhhh-----------h------cc---cceecccccceeEecccCCCcccHhhhcCcceEEecCcccccc
Confidence 5 44443 25532 2 12 256888888755422 1 13456777775 33344444
Q ss_pred hHH
Q 012883 391 YFD 393 (454)
Q Consensus 391 Y~D 393 (454)
|..
T Consensus 226 ~~Q 228 (272)
T COG4130 226 IAQ 228 (272)
T ss_pred HHH
Confidence 443
No 160
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=42.47 E-value=55 Score=32.56 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=43.6
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---ch---HHHHHHHHHHHcCCc---eEEEEE--eecc
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK---VQVVMA--FHEY 332 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WS---gY~~Lf~mir~~GLK---lqvVMS--FHqC 332 (454)
++|......+...++| ..|+-.|++|||=| +...|-.|- .. ..+++.+.|++.+.+ .-+||| -|.|
T Consensus 24 ~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg--~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~Hcs 100 (227)
T cd08594 24 DQLLSQSRVDMYARVL-QAGCRCVEVDCWDG--PDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENHCS 100 (227)
T ss_pred CcccCcccHHHHHHHH-HhCCcEEEEEeecC--CCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEecccCC
Confidence 4565556667777777 67999999999988 221233222 11 268999999998776 445555 4643
No 161
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.93 E-value=74 Score=30.60 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=42.5
Q ss_pred CccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 248 ~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
.+|+.+|.=+..+ +. .....++.++++|++||.+... .+|. ...-.++++.+++.||+.-+.+
T Consensus 74 ~~Pl~lM~y~n~~-----~~---~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 74 SVPIILMTYLEDY-----VD---SLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred CCCEEEEEecchh-----hh---CHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4577666544321 12 3445578889999999999421 0121 2346789999999999987776
Q ss_pred Ee
Q 012883 328 AF 329 (454)
Q Consensus 328 SF 329 (454)
+-
T Consensus 137 ~p 138 (244)
T PRK13125 137 SP 138 (244)
T ss_pred CC
Confidence 54
No 162
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=41.91 E-value=56 Score=31.63 Aligned_cols=52 Identities=27% Similarity=0.245 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
.-.+..|+..|+.||.+|+==-+|+=..|.--.| -++.++-++++|+||-+|
T Consensus 17 ~i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe--~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 17 DITPDILKAHGIKGVILDLDNTLVPWDNPDATPE--LRAWLAELKEAGIKVVVV 68 (175)
T ss_pred hCCHHHHHHcCCcEEEEeccCceecccCCCCCHH--HHHHHHHHHhcCCEEEEE
Confidence 3456789999999999998777776555555555 778899999999999766
No 163
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=41.12 E-value=40 Score=33.80 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=32.8
Q ss_pred HHHHHhcCcceEEEeeeeeeeecCCCcc---ccchHHHHHHHHHHHcCCce
Q 012883 276 ISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 276 L~aLK~~GVdGVmVDVWWGiVE~~~P~q---YdWSgY~~Lf~mir~~GLKl 323 (454)
+..++.+|++|||+|-+ .+.+..- +++..-.+..+.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 56778999999999976 3444444 45566677788889999874
No 164
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.66 E-value=23 Score=37.68 Aligned_cols=33 Identities=42% Similarity=0.835 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccc-hHHHhhhcC
Q 012883 305 AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP-QWVMEIGKG 354 (454)
Q Consensus 305 dWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP-~WV~e~g~~ 354 (454)
.|.-|.+||..+- |-.+.+.+.|| .|+|++.++
T Consensus 6 Sw~nYc~LF~~iL-----------------~s~~p~~l~LPn~WlwDiiDE 39 (404)
T PF10255_consen 6 SWDNYCELFNYIL-----------------NSDGPVNLELPNQWLWDIIDE 39 (404)
T ss_pred HHHHHHHHHHHHh-----------------CCCCCcccCCCcHHHHHHHHH
Confidence 5999999999987 21235788999 699998544
No 165
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=40.40 E-value=69 Score=31.93 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=43.7
Q ss_pred hcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCC------CCcccccchHHHhhhc
Q 012883 281 ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS------GDAWISLPQWVMEIGK 353 (454)
Q Consensus 281 ~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVG------D~~~IPLP~WV~e~g~ 353 (454)
.+|++-+.+-. -||-..|.++.+.+++.|+++.++..+=-+. |.. .-|.|.+|.|+.+.-+
T Consensus 159 ~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~-s~~~~~~~~~~~Gi~vP~~l~~~l~ 225 (281)
T TIGR00677 159 DAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN-NYASFLRRAKWSKTKIPQEIMSRLE 225 (281)
T ss_pred HcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccC-CHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 49999876533 5788899999999999999987765543332 111 1355889999998643
No 166
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=40.30 E-value=28 Score=32.32 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeee--eecCCC----------ccccc------h-------------HHHHHHHHHHH
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGI--VEGWNP----------QKYAW------S-------------GYRELFNIIRE 318 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGi--VE~~~P----------~qYdW------S-------------gY~~Lf~mir~ 318 (454)
++++..|+.|+++|||||+|.-+.-+ +...+| +.||- . ...+|.+|++.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~ 81 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSNPGLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAEN 81 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHh
Confidence 57899999999999999998755442 111111 11111 1 24678899999
Q ss_pred c-CCceEEEEE
Q 012883 319 F-NLKVQVVMA 328 (454)
Q Consensus 319 ~-GLKlqvVMS 328 (454)
. ++++-++.-
T Consensus 82 ~~~~~~Ev~v~ 92 (233)
T PF01136_consen 82 SPGVPLEVIVH 92 (233)
T ss_pred CCCCeEEEEEe
Confidence 9 888877554
No 167
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=40.26 E-value=73 Score=30.77 Aligned_cols=70 Identities=14% Similarity=0.294 Sum_probs=49.7
Q ss_pred cCHHHHHHHHHHHHh--cCcceEEEeeeeeeeecCCCccc--cc-----hHHHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 012883 267 VDPELIRQEISHMKA--LNVDGVIVNCWWGIVEGWNPQKY--AW-----SGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (454)
Q Consensus 267 ~~~~al~a~L~aLK~--~GVdGVmVDVWWGiVE~~~P~qY--dW-----SgY~~Lf~mir~~GLKlqvVMSFHqCGGNVG 337 (454)
.+.+.+..-...+++ +-+|.|.+|.+|..- -+.+ +| .--+++++-+++.|+|+.+++.-+-
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v------ 90 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI------ 90 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH------
Confidence 566777777777777 667999999999832 2333 44 4467888899999998877764332
Q ss_pred CCcccccchHHHhhhc
Q 012883 338 GDAWISLPQWVMEIGK 353 (454)
Q Consensus 338 D~~~IPLP~WV~e~g~ 353 (454)
-.|..+.-+
T Consensus 91 -------~~w~~~~~~ 99 (265)
T cd06589 91 -------REWWAEVVK 99 (265)
T ss_pred -------HHHHHHHHH
Confidence 778887543
No 168
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=39.84 E-value=61 Score=30.05 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
..+..-|+..+.+|.+||++.. ++. ...++....+|-+..++.||++-.+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~-~~~------~~~~~~~~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP-GDL------FPADYKELAELKELLADYGLEITSL 64 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC-ccc------CCchhhhHHHHHHHHHHcCcEEEee
Confidence 4566778888888888888766 221 1112222677777888888776543
No 169
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=39.78 E-value=25 Score=35.42 Aligned_cols=63 Identities=21% Similarity=0.458 Sum_probs=44.5
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---c---hHHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---W---SGYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---W---SgY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|.....++...++|+ .|+-.|++|||=|- ...|-.|- + =..+++.+.|++.+.+ .-+|||+
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~--~~ep~v~HG~tlt~~i~f~~v~~~I~~~AF~~s~yPvIlsl 95 (257)
T cd08595 24 DQLVGPSDLDGYVSALR-KGCRCLEIDCWDGA--DNEPVVYHGYTLTSKILFKEVITTVEKYAFEKSDYPVVLSL 95 (257)
T ss_pred CcccCcccHHHHHHHHH-hCCcEEEEEeecCC--CCCcEEecCCCcccccCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 56777777888888888 79999999999872 11233322 1 1358999999998775 4566664
No 170
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=39.57 E-value=75 Score=32.11 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=44.7
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEE--eecc
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMA--FHEY 332 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMS--FHqC 332 (454)
++|.-....+...++|+ .|+-.|++|||=|- ...|-.| .+. ..+++++.|++...+ .-+||| -|.|
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdG~--~~eP~V~HG~tlts~i~f~dv~~~I~~~AF~~S~yPvIlslE~Hcs 100 (254)
T cd08596 24 HQLKGESSVELYSQVLL-TGCRCVELDCWDGD--DGMPIIYHGHTLTTKIPFKDVVEAINRSAFITSDYPVILSIENHCS 100 (254)
T ss_pred CccCCccCHHHHHHHHH-cCCcEEEEEeecCC--CCCcEEeeCCCcccCcCHHHHHHHHHHHhccCCCCCEEEEecccCC
Confidence 56666667777788875 79999999999872 1123222 222 368899999988876 345555 5755
No 171
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=39.02 E-value=53 Score=33.23 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCcceEEEeeeee-eeec--------CCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 272 IRQEISHMKALNVDGVIVNCWWG-IVEG--------WNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWG-iVE~--------~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
.+..|++||++|++.+- | -+|. -.|++..|.-+.+..+.++++|+++-.-|=|
T Consensus 149 ~~e~l~~LkeAGld~~~-----~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMP-----GGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCC-----CCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 45679999999998664 2 2333 2256777889999999999999998655443
No 172
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=38.57 E-value=94 Score=30.15 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEE--eeeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 247 ~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmV--DVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
..+||++..--. +-+..-...+.++++|+||||+ +.|+..-+. .-+ .+|+++++. .++-
T Consensus 69 ~~~~vi~gv~~~---------st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~---~l~--~y~~~ia~~-----~~~p 129 (289)
T PF00701_consen 69 GRVPVIAGVGAN---------STEEAIELARHAQDAGADAVLVIPPYYFKPSQE---ELI--DYFRAIADA-----TDLP 129 (289)
T ss_dssp TSSEEEEEEESS---------SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHH---HHH--HHHHHHHHH-----SSSE
T ss_pred CceEEEecCcch---------hHHHHHHHHHHHhhcCceEEEEeccccccchhh---HHH--HHHHHHHhh-----cCCC
Confidence 568888875432 2355556677789999999975 455542221 122 235555532 3344
Q ss_pred EEEEee--ccCCCCCCCcccccchHHHhhhcCCCC-eEEecCCCCc
Q 012883 325 VVMAFH--EYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRR 367 (454)
Q Consensus 325 vVMSFH--qCGGNVGD~~~IPLP~WV~e~g~~npD-IfyTDrsG~R 367 (454)
+++--+ .+| ..|+...+..-.+.|. +-++|.+|+.
T Consensus 130 i~iYn~P~~tg--------~~ls~~~l~~L~~~~nv~giK~s~~~~ 167 (289)
T PF00701_consen 130 IIIYNNPARTG--------NDLSPETLARLAKIPNVVGIKDSSGDL 167 (289)
T ss_dssp EEEEEBHHHHS--------STSHHHHHHHHHTSTTEEEEEESSSBH
T ss_pred EEEEECCCccc--------cCCCHHHHHHHhcCCcEEEEEcCchhH
Confidence 444333 122 3465555554444666 5677777744
No 173
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=38.40 E-value=25 Score=33.26 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=21.3
Q ss_pred ecCCCCccCceee-eecCcccccCCCchh
Q 012883 361 TDREGRRNTECLS-WGVDKERVLNGRTGI 388 (454)
Q Consensus 361 TDrsG~Rn~EcLS-lgvD~~pVL~GRTpi 388 (454)
.....+-+.|-|+ |++|+.+-++|||.+
T Consensus 107 v~vd~k~~~~~l~WL~~~d~~sidg~tvl 135 (153)
T PRK09993 107 STIDEKTSQEKLTWLNVNDALSIDGKTVL 135 (153)
T ss_pred EEcCCCcChhheeeecCCCCcccccceee
Confidence 3444555678888 788888899999987
No 174
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=38.29 E-value=64 Score=31.79 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHH
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE 318 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~ 318 (454)
-+++-++-++..|.|||.+|+| -.....+. .=+...|.+|++.+++
T Consensus 96 fi~s~~~~~~~~~~DGidiD~w-e~p~~~~~-~~d~~~~~~~l~el~~ 141 (318)
T cd02876 96 LIKLLVTTAKKNHFDGIVLEVW-SQLAAYGV-PDKRKELIQLVIHLGE 141 (318)
T ss_pred HHHHHHHHHHHcCCCcEEEech-hhhcccCC-HHHHHHHHHHHHHHHH
Confidence 3444566778999999999974 22211110 1255667777666654
No 175
>PRK02227 hypothetical protein; Provisional
Probab=37.76 E-value=45 Score=33.42 Aligned_cols=46 Identities=11% Similarity=0.001 Sum_probs=34.5
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCc---cccchHHHHHHHHHHHcCCce
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~---qYdWSgY~~Lf~mir~~GLKl 323 (454)
.-+..++.+|++|+|+|-+ .+.+-. -+++..-.++.+++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4467788999999999975 344433 456677778888899999874
No 176
>PRK06256 biotin synthase; Validated
Probab=37.24 E-value=44 Score=33.04 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCccc-------cchHHHHHHHHHHHcCCceEEEEEe
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------AWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY-------dWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
...|+.||++|++.|.+. +|. ++..| +|..+.+.++.++++|+++..-+=|
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~ 209 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII 209 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE
No 177
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=37.10 E-value=1e+02 Score=29.26 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCcceEEEee
Q 012883 270 ELIRQEISHMKALNVDGVIVNC 291 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDV 291 (454)
..+...|+.+|++|.++|.+++
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~ 31 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFL 31 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEc
Confidence 5678889999999999998876
No 178
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=37.07 E-value=1.7e+02 Score=24.96 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
..+.+...++.|+++|.-.|.+.+.-|+. ..++....++++.+++.|.+-..++.|.
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLP------GETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCC------CCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 34788888999999984346666666644 2367888999999999999865555555
No 179
>PRK06233 hypothetical protein; Provisional
Probab=37.03 E-value=85 Score=32.35 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCcceEEEee-eee-eeecCCC---ccccchHHHHHHHH-------HHHcCCceEEEEEeeccCCCC
Q 012883 269 PELIRQEISHMKALNVDGVIVNC-WWG-IVEGWNP---QKYAWSGYRELFNI-------IREFNLKVQVVMAFHEYGAND 336 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDV-WWG-iVE~~~P---~qYdWSgY~~Lf~m-------ir~~GLKlqvVMSFHqCGGNV 336 (454)
.++++..+++|..+|++-|-+|- .|+ +.+.... .--.|..|.++++. +-+ |+.--..+++|-|-||.
T Consensus 170 A~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~ 248 (372)
T PRK06233 170 AQAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNF 248 (372)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCC
Confidence 36788899999999999999984 565 2221111 00123444333333 332 56445567999998887
Q ss_pred CCCccc--ccchHHHhhhcCCCCeEEecCCCCc--cCceee-eec---Cccc---ccCCCchhHhhHHHHHHHHHHHhhh
Q 012883 337 SGDAWI--SLPQWVMEIGKGNQDIFFTDREGRR--NTECLS-WGV---DKER---VLNGRTGIEVYFDFMRSFRTEFDDL 405 (454)
Q Consensus 337 GD~~~I--PLP~WV~e~g~~npDIfyTDrsG~R--n~EcLS-lgv---D~~p---VL~GRTpiq~Y~DFMrSFr~~F~d~ 405 (454)
...-.. +.-.=+-...+.+.|.||.+=...| +.|.|. ++. ++.- |+.-++|.=.-.|.++.=-.++.+|
T Consensus 249 ~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~ 328 (372)
T PRK06233 249 KSTYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEY 328 (372)
T ss_pred CCcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHh
Confidence 421111 1101111223457787776543333 224444 222 2322 2355777766677777766677777
Q ss_pred hc
Q 012883 406 FV 407 (454)
Q Consensus 406 l~ 407 (454)
++
T Consensus 329 v~ 330 (372)
T PRK06233 329 VP 330 (372)
T ss_pred CC
Confidence 64
No 180
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=36.88 E-value=31 Score=40.17 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=43.9
Q ss_pred eeeeeeeecCCCccc---cchHHHH---HHHHHHHcCCceEEEEEeeccCCCCCCCcccccch-HHHh-hhcCCCCeEEe
Q 012883 290 NCWWGIVEGWNPQKY---AWSGYRE---LFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ-WVME-IGKGNQDIFFT 361 (454)
Q Consensus 290 DVWWGiVE~~~P~qY---dWSgY~~---Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~-WV~e-~g~~npDIfyT 361 (454)
.|--|.--+..++-| +|+-|+. |.+++++.|+|+.. ||.+||.||-.-- |.=. .+.+ .|..+-.|-+|
T Consensus 563 eVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~---FhGrGGsv~RGGg-p~~~ai~~qp~g~~~g~iR~T 638 (911)
T PRK00009 563 EVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL---FHGRGGTVGRGGG-PAYAAILSQPPGSVKGRIRVT 638 (911)
T ss_pred EEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCCCC-hHHHHHHhCCCccccCceEEE
Confidence 444465555444443 7988875 66778999988775 8999999987533 2111 2222 14445567788
Q ss_pred cCC
Q 012883 362 DRE 364 (454)
Q Consensus 362 Drs 364 (454)
-+.
T Consensus 639 eQG 641 (911)
T PRK00009 639 EQG 641 (911)
T ss_pred eec
Confidence 655
No 181
>PRK12677 xylose isomerase; Provisional
Probab=36.70 E-value=86 Score=32.67 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCcceEEEee---e-eeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 271 LIRQEISHMKALNVDGVIVNC---W-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDV---W-WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
.+...+..++.+|++||++.. | |+.... ..+ ...+++-+++++.||++-.|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~~v~ 87 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVPMVT 87 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeEEEe
Confidence 367888999999999998821 1 221111 111 147889999999999987664
No 182
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=36.62 E-value=68 Score=33.21 Aligned_cols=65 Identities=9% Similarity=-0.029 Sum_probs=45.6
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCC
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~ 339 (454)
..+.+|.+|+|+|.+=||||--+...-+......-.+|.+.|++.||-+-.-+=...-|+++-++
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~ 175 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA 175 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc
Confidence 45668999999999999999332211134556668899999999999987743345556554443
No 183
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=36.53 E-value=30 Score=40.51 Aligned_cols=16 Identities=56% Similarity=0.856 Sum_probs=7.6
Q ss_pred CccchhHHHHhHHHHH
Q 012883 67 KKEREKEKERTKLRER 82 (454)
Q Consensus 67 ~~~r~~erE~~k~RER 82 (454)
-+.|++||||.+.|||
T Consensus 322 d~srererer~r~RER 337 (1194)
T KOG4246|consen 322 DKSRERERERERDRER 337 (1194)
T ss_pred ccccchhhhhhhhhhc
Confidence 3444445555544444
No 184
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=36.49 E-value=1e+02 Score=28.05 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
+..-++.++.+|++.|.+--+. +..++.+++++++.+ ++.+.+.+|-
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~GihP 63 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVHP 63 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeCc
Confidence 5566778889999998733211 255677889999999 9999999994
No 185
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=36.37 E-value=32 Score=40.07 Aligned_cols=67 Identities=16% Similarity=0.381 Sum_probs=49.5
Q ss_pred ccCHHHHHHHHHHHH-----hcC---cceEEEeeeeeeeecCCCccc---cchHHH---HHHHHHHHcCCceEEEEEeec
Q 012883 266 LVDPELIRQEISHMK-----ALN---VDGVIVNCWWGIVEGWNPQKY---AWSGYR---ELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 266 l~~~~al~a~L~aLK-----~~G---VdGVmVDVWWGiVE~~~P~qY---dWSgY~---~Lf~mir~~GLKlqvVMSFHq 331 (454)
|+|...+..+|-.|- .+| +.-||+ |.--+..++.| +|.-|+ +|.++++++|.+|+- ||.
T Consensus 532 L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMl----GYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl---FHG 604 (910)
T COG2352 532 LDNAPDVMTQLLNLPLYRALLAGRGNVQEVML----GYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRL---FHG 604 (910)
T ss_pred HhccHHHHHHHHcChHHHHHHcCCCCceEEEe----cccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE---Ecc
Confidence 566666666654331 233 777887 66666666666 899896 689999999999885 999
Q ss_pred cCCCCCCC
Q 012883 332 YGANDSGD 339 (454)
Q Consensus 332 CGGNVGD~ 339 (454)
=||.||-.
T Consensus 605 RGGtVGRG 612 (910)
T COG2352 605 RGGSVGRG 612 (910)
T ss_pred CCCCCCCC
Confidence 99999863
No 186
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.28 E-value=96 Score=30.98 Aligned_cols=65 Identities=12% Similarity=0.239 Sum_probs=43.9
Q ss_pred ccCHHHHHHHHHHHHhcC--cceEEEee-eeeeee-cCCCccccch-----HHHHHHHHHHHcCCceEEEEEee
Q 012883 266 LVDPELIRQEISHMKALN--VDGVIVNC-WWGIVE-GWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~G--VdGVmVDV-WWGiVE-~~~P~qYdWS-----gY~~Lf~mir~~GLKlqvVMSFH 330 (454)
..+.+.+..-++.+++.| +|.|.+|. |++..- ...-+.|+|. --+++++-+++.|+|+.+++-=|
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 346677777777777755 79999998 554221 1112345553 46788888999999998887544
No 187
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=36.20 E-value=1e+02 Score=29.62 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=47.2
Q ss_pred EeecceecCCccccCHHHHHHHHHHHH-----hcCcc----eEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 254 MLANHVINNFCQLVDPELIRQEISHMK-----ALNVD----GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 254 MLPLdvV~~~~~l~~~~al~a~L~aLK-----~~GVd----GVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
++|-+.|. +|.+.|.++...-|++|| .+|.. -|.|++|+.-+|+ +.+.+.++.+||++.
T Consensus 25 ~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 25 MQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEVL 92 (239)
T ss_pred eccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCceE
Confidence 44444443 578999999999999998 34542 4678888876665 578889999999998
Q ss_pred EEEE
Q 012883 325 VVMA 328 (454)
Q Consensus 325 vVMS 328 (454)
.++.
T Consensus 93 ~li~ 96 (239)
T TIGR02529 93 HVLD 96 (239)
T ss_pred EEee
Confidence 7765
No 188
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=36.13 E-value=27 Score=33.30 Aligned_cols=48 Identities=6% Similarity=0.159 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
++.|++.|.+||+.||..|.+ ++|...-..|.+. .|.+.++++|++|+
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEEE
Confidence 478999999999999999876 6776655566665 56688999998764
No 189
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=35.96 E-value=49 Score=35.00 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHH--HcCCceEEEEEee
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR--EFNLKVQVVMAFH 330 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir--~~GLKlqvVMSFH 330 (454)
+.+.|....+.++++|..+||||++|. -|+. |-.+.+ +.+|-|+.=-+||
T Consensus 202 ~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~---l~~l~~~~~~~lpIhaHra~~ 253 (391)
T cd08209 202 PVFTLKEKARRLVEAGANALLFNVFAY----------GLDV---LEALASDPEINVPIFAHPAFA 253 (391)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccc----------chHH---HHHHHhcCcCCcEEEecCCcc
Confidence 358899999999999999999999875 3444 444555 5566565555566
No 190
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=35.84 E-value=41 Score=30.05 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=15.3
Q ss_pred HHHHHHhcCcceEEEeeeee
Q 012883 275 EISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWG 294 (454)
.+++...+|+++|++||+.-
T Consensus 15 af~~A~~~G~~~iE~Dv~lT 34 (256)
T PF03009_consen 15 AFRAAIELGADGIELDVQLT 34 (256)
T ss_dssp HHHHHHHTTSSEEEEEEEE-
T ss_pred HHHHHHHhCCCeEccccccc
Confidence 34445678999999999985
No 191
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=35.83 E-value=84 Score=31.43 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHH
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV 348 (454)
...|...|+..|.+|.+.|+|- .+--...=.-..+|.+++++.|||+.+=+.-.- -.....++...|+
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~----~~~~~~~~~~~~i 137 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSEVGKKS----PEKDSELTPDDRI 137 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEeccccccC----CcccccCCHHHHH
Confidence 3789999999999999999883 233344555678899999999999987554321 1112245667787
Q ss_pred Hhh
Q 012883 349 MEI 351 (454)
Q Consensus 349 ~e~ 351 (454)
..+
T Consensus 138 ~~~ 140 (237)
T TIGR03849 138 KLI 140 (237)
T ss_pred HHH
Confidence 654
No 192
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=35.72 E-value=90 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeee
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWG 294 (454)
.+......+.++.+|+|+|++..=++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 57777888899999999999975554
No 193
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=35.71 E-value=1.1e+02 Score=28.50 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecC------CCccccchHHHHHHHHHHHcCCceEEEE-EeeccCCCCCCCcccccc
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGW------NPQKYAWSGYRELFNIIREFNLKVQVVM-AFHEYGANDSGDAWISLP 345 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~------~P~qYdWSgY~~Lf~mir~~GLKlqvVM-SFHqCGGNVGD~~~IPLP 345 (454)
...++.++.+|++.|.+-+=-. +.. .....++.-..+..+.+++.|+++.+.+ ....|.-|.. -|.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~-----~l~ 149 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPE-----YVL 149 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHH-----HHH
Confidence 5678888999999887766322 110 1112256678888999999999999888 5776621211 123
Q ss_pred hHHHhhhcCCCC-eEEecCCCCccC
Q 012883 346 QWVMEIGKGNQD-IFFTDREGRRNT 369 (454)
Q Consensus 346 ~WV~e~g~~npD-IfyTDrsG~Rn~ 369 (454)
..+....+.-.| |.+.|-.|.-.+
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G~~~P 174 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVGLATP 174 (265)
T ss_pred HHHHHHHHcCCCEEEechhcCCcCH
Confidence 333333333355 556666555333
No 194
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=35.67 E-value=1.2e+02 Score=30.03 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=39.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
.+.+.+...++.++..|+..|.+ +-...| .+++..|.++++.|++.+.++..
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l------~gg~~~-~~~~~~~~~i~~~Ik~~~~~i~~ 87 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCI------QGGLNP-QLDIEYYEELFRAIKQEFPDVHI 87 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE------ecCCCC-CCCHHHHHHHHHHHHHHCCCceE
Confidence 35678888888899999998876 322234 36778899999999999766654
No 195
>PRK04302 triosephosphate isomerase; Provisional
Probab=35.63 E-value=96 Score=29.29 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=32.3
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
..++.||.+||+||.++-. | +...+..-.++++.+++.||.+. ++.|
T Consensus 76 ~~~~~l~~~G~~~vii~~s----e----r~~~~~e~~~~v~~a~~~Gl~~I--~~v~ 122 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINHS----E----RRLTLADIEAVVERAKKLGLESV--VCVN 122 (223)
T ss_pred hHHHHHHHcCCCEEEEecc----c----cccCHHHHHHHHHHHHHCCCeEE--EEcC
Confidence 4588999999999988642 2 22333446678888888887755 5444
No 196
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=35.63 E-value=1.4e+02 Score=35.09 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc-------------cchHHHHHHHHHHHcCCceEEEEEeeccCC
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY-------------dWSgY~~Lf~mir~~GLKlqvVMSFHqCGG 334 (454)
+.+.+.+.|..||.+||+.|-+---+--.. .+...| ....+++|.+.+++.||||..=+-+.-|+.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~-gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARP-GSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCC-CCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 347899999999999999997654321110 122233 357899999999999999988888877764
Q ss_pred C
Q 012883 335 N 335 (454)
Q Consensus 335 N 335 (454)
+
T Consensus 97 ~ 97 (879)
T PRK14511 97 G 97 (879)
T ss_pred c
Confidence 3
No 197
>PLN02222 phosphoinositide phospholipase C 2
Probab=35.55 E-value=71 Score=35.64 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=44.0
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc---ch---HHHHHHHHHHHcCCc---eEEEEEe
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd---WS---gY~~Lf~mir~~GLK---lqvVMSF 329 (454)
+++|.-....+...++|+ .|+-.|++|||=|--+ +.|..|- +. ..+++++.|++...+ .-+|||+
T Consensus 124 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~~-~~~~v~HG~tlt~~i~f~~v~~~I~~~aF~~s~yPvIlsl 197 (581)
T PLN02222 124 GNQLSSDCSEVPIIDALK-KGVRVIELDIWPNSDK-DDIDVLHGMTLTTPVGLIKCLKAIRAHAFDVSDYPVVVTL 197 (581)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeccCCCC-CCCeEeeCCcccCceeHHHHHHHHHHhcccCCCCCEEEEe
Confidence 356666666777778875 7999999999987321 1222221 11 268899999999985 5667774
No 198
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=35.47 E-value=46 Score=34.77 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=29.7
Q ss_pred CccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeee
Q 012883 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVE 297 (454)
Q Consensus 248 ~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE 297 (454)
..||||..=+-.-+....+-..+.|...|...+++|++|| |.||--+
T Consensus 260 ~~pV~~Y~r~~~~~~~~~fLs~~DL~~TigesaalGa~Gv---ViWG~s~ 306 (337)
T PF01630_consen 260 PLPVFPYTRYVYYDSTDEFLSQEDLVNTIGESAALGAAGV---VIWGSSN 306 (337)
T ss_dssp --EEEEEEESEETTEEEEE--HHHHHHHHHHHHHTT-SEE---EEE--GG
T ss_pred CcceeeeeecccccCccccchhhHHHHHHHHHHHcCCCeE---EEeeccc
Confidence 3788877654332233456678999999999999999999 5699544
No 199
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=35.40 E-value=34 Score=40.13 Aligned_cols=51 Identities=24% Similarity=0.503 Sum_probs=34.9
Q ss_pred cCcceEEEeeeeeeeecCCCcc---ccchHHHH---HHHHHHHcCCceEEEEEeeccCCCCCCC
Q 012883 282 LNVDGVIVNCWWGIVEGWNPQK---YAWSGYRE---LFNIIREFNLKVQVVMAFHEYGANDSGD 339 (454)
Q Consensus 282 ~GVdGVmVDVWWGiVE~~~P~q---YdWSgY~~---Lf~mir~~GLKlqvVMSFHqCGGNVGD~ 339 (454)
.|.--||+ |.--+..++- -+|+-|+. |.++++++|+|+.. ||.+||.||-.
T Consensus 616 ~~~qeVMl----GYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~---FhGrGGsvgRG 672 (974)
T PTZ00398 616 NGIQEIMI----GYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRF---FHGRGGSVSRG 672 (974)
T ss_pred CCeEEEEE----ecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCC
Confidence 56656665 5444333333 37888875 66678999998776 89999999864
No 200
>PRK09505 malS alpha-amylase; Reviewed
Probab=35.30 E-value=1e+02 Score=34.80 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEe-eeeeeeec-----------CCCccc-------------cchHHHHHHHHHHHcCCc
Q 012883 268 DPELIRQEISHMKALNVDGVIVN-CWWGIVEG-----------WNPQKY-------------AWSGYRELFNIIREFNLK 322 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVD-VWWGiVE~-----------~~P~qY-------------dWSgY~~Lf~mir~~GLK 322 (454)
|.+.|...|..||++||++|-+- ++=.+... .+...| ....+++|++.+.+.|+|
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 67899999999999999999753 32111000 011111 345789999999999999
Q ss_pred eEEEEEeeccC
Q 012883 323 VQVVMAFHEYG 333 (454)
Q Consensus 323 lqvVMSFHqCG 333 (454)
|..=+-|--++
T Consensus 308 VilD~V~NH~~ 318 (683)
T PRK09505 308 ILFDVVMNHTG 318 (683)
T ss_pred EEEEECcCCCc
Confidence 87766553343
No 201
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=35.30 E-value=3.4e+02 Score=26.92 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE------------------EEe
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV------------------MAF 329 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV------------------MSF 329 (454)
+++.+...++.++..|+++|.+.+-.- +++. ...|.- |-++.+..++++.+- +..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~~---~~~~~~---i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLGR---RLTWDD---LAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCCC---CCCHHH---HHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEE
Confidence 567888888999999999998866432 2221 144532 222333334443321 234
Q ss_pred eccCCCCCCCcccccchHHHhhhcCCC-CeEEecCCCCcc----CceeeeecCcccccCCCchhH--------hhHHHHH
Q 012883 330 HEYGANDSGDAWISLPQWVMEIGKGNQ-DIFFTDREGRRN----TECLSWGVDKERVLNGRTGIE--------VYFDFMR 396 (454)
Q Consensus 330 HqCGGNVGD~~~IPLP~WV~e~g~~np-DIfyTDrsG~Rn----~EcLSlgvD~~pVL~GRTpiq--------~Y~DFMr 396 (454)
|.+||-..| ..++-..++.++.+.-+ +|-..=--|-++ .++|.+|+|-+-| ||--+. --.++++
T Consensus 200 ~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i--g~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI--GRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE--cHHHHHHHHhcCHHHHHHHHH
Confidence 556665433 22333444555433221 333332333333 4688899998544 443332 2246888
Q ss_pred HHHHHHhhhhc
Q 012883 397 SFRTEFDDLFV 407 (454)
Q Consensus 397 SFr~~F~d~l~ 407 (454)
.++.++...+.
T Consensus 277 ~l~~el~~~m~ 287 (299)
T cd02809 277 ILRDELERAMA 287 (299)
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 202
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=35.24 E-value=1.9e+02 Score=31.08 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=38.2
Q ss_pred EEEEeecceecCCcc-ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHH-HHHHHHHH
Q 012883 251 VYVMLANHVINNFCQ-LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGY-RELFNIIR 317 (454)
Q Consensus 251 VyVMLPLdvV~~~~~-l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY-~~Lf~mir 317 (454)
+-|.+|.+....... -.-.+++++.++.|+++|.+-|.+++.+- ...|-|..| ..++..++
T Consensus 261 lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~Ga~v~~v~lp~~------~~~~~~~~~~~~~~~~~~ 323 (475)
T COG0154 261 LRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLL------SDDYALAAYYLARFDGER 323 (475)
T ss_pred cEEEEECcccccCCCcHHHHHHHHHHHHHHHHCCCEEEeccCCch------hhhhhhhHHHHHHhhhhh
Confidence 456666655432110 12357799999999999999997777654 334566666 45555444
No 203
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=35.22 E-value=33 Score=34.59 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=44.4
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEEe
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMSF 329 (454)
+++|......+...++|+ .|+-.|++|||=|---...|-.| -+. ..+++.+.|++.+.+ .-+|||+
T Consensus 23 g~Ql~g~ss~e~y~~aL~-~GcRcvElD~Wdg~~~~~eP~V~HG~tlts~i~f~~v~~aIk~~AF~~s~yPvIlsl 97 (257)
T cd08591 23 GRQFGGKSSVEMYRQVLL-SGCRCIELDCWDGKGEDEEPIITHGKTMCTEILFKDVIEAIAETAFKTSEYPVILSF 97 (257)
T ss_pred CCcccCcccHHHHHHHHH-hCCcEEEEEeecCCCCCCCCEEeeCCCCccCeEHHHHHHHHHHHhccCCCCCEEEEE
Confidence 356666677788888888 79999999999984200123222 222 368999999998776 4455553
No 204
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=34.89 E-value=1.3e+02 Score=36.04 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=51.9
Q ss_pred cceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 257 NHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 257 LdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
+|++-.+..|||-+.|+...+++|..|..---.=|+=|-+....-.+|+..+|.++++.+.++|...
T Consensus 639 idifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~ 705 (1143)
T TIGR01235 639 IDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHI 705 (1143)
T ss_pred CCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 5555566778999999999999999998655555666544433334899999999999999988654
No 205
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=34.89 E-value=3.6e+02 Score=26.12 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
.++.+..-|+.|.++|+..|.+|+-- .|+ ..++=.+...|++.+++.|=++.
T Consensus 62 ~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~---~~~~~~~D~~la~al~~~~~~vv 113 (310)
T PF05226_consen 62 PRSVYARLLDRLAAAGAKAIGFDILF--DEP---DPSNPEGDQALAEALRRAGNRVV 113 (310)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeee--cCC---CCCCchHHHHHHHHHHhCCCeEE
Confidence 67889999999999999999999965 343 22211278999999998876544
No 206
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=34.74 E-value=40 Score=34.88 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
..|+.+++.|+++|-.+.|.-+.. .. .+.. -..++++.++++||||++=
T Consensus 249 ~~l~~i~a~~a~~i~P~~~~l~~~-~~--~~~~-~~~~~v~~Ah~~GL~V~~W 297 (356)
T cd08560 249 PSMDELKARGVNIIAPPIWMLVDP-DE--NGKI-VPSEYAKAAKAAGLDIITW 297 (356)
T ss_pred HHHHHHHhCCccEecCchhhcccc-cc--cccc-CCHHHHHHHHHcCCEEEEE
Confidence 668999999999887755443333 11 2222 5678999999999998763
No 207
>PRK15108 biotin synthase; Provisional
Probab=34.71 E-value=1.2e+02 Score=31.01 Aligned_cols=123 Identities=14% Similarity=0.216 Sum_probs=69.5
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccch
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~ 346 (454)
.+++.+....+.++..|+.-|.+=.=| ..|...++.+|.++++.||+.|+++ ++| .| .++ +.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g-----~~p~~~~~e~i~~~i~~ik~~~i~v--~~s---~G-------~ls-~e 137 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAW-----KNPHERDMPYLEQMVQGVKAMGLET--CMT---LG-------TLS-ES 137 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecC-----CCCCcchHHHHHHHHHHHHhCCCEE--EEe---CC-------cCC-HH
Confidence 356888888888999999988442222 1455567788999999999988753 333 22 112 33
Q ss_pred HHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecccCc
Q 012883 347 WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPS 421 (454)
Q Consensus 347 WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGLGPa 421 (454)
.+.+-.+.--|-+--+-+. +++ ++. + -++-..|.+.++..+...+-=+ .+-+.+-||||..
T Consensus 138 ~l~~LkeAGld~~n~~leT--~p~---~f~-~------I~~~~~~~~rl~~i~~a~~~G~--~v~sg~i~GlgEt 198 (345)
T PRK15108 138 QAQRLANAGLDYYNHNLDT--SPE---FYG-N------IITTRTYQERLDTLEKVRDAGI--KVCSGGIVGLGET 198 (345)
T ss_pred HHHHHHHcCCCEEeecccc--ChH---hcC-C------CCCCCCHHHHHHHHHHHHHcCC--ceeeEEEEeCCCC
Confidence 4433222223322221111 011 111 1 1123378888888877765422 3556788888754
No 208
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=34.69 E-value=97 Score=26.32 Aligned_cols=50 Identities=24% Similarity=0.503 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
+.++..++.|+++.-++ .|=+||| ..-||.-++..++...++...+|.+|
T Consensus 71 ~~~~~~~~~l~~l~~~~-~I~iW~~------~~~~dq~gl~~~l~~L~~~~~~I~~v 120 (124)
T PF08874_consen 71 QRFEQELKRLEELPEDD-PIVIWYG------DNAYDQLGLRYLLSLLKDKPNRIYVV 120 (124)
T ss_pred HHHHHHHHHHHhCCCCC-EEEEEeC------CCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 66788888888887777 8889987 67899999999999999999888776
No 209
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=34.33 E-value=35 Score=38.39 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
...+.+|+++|+-|+-|.=-. ++-.|.|+.|.+||+++--+-+.+-+.|.-||.-
T Consensus 112 ~~t~e~l~elG~fgl~v~~e~------~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i 166 (634)
T KOG0137|consen 112 ETTLEALRELGLFGLQVPSEF------DGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSI 166 (634)
T ss_pred hhHHHHHHHhCceeeccCccc------CccccchHHHHHHhhccccccccceeeeccchhh
Confidence 456788999999999876433 4788999999999999999999999999999943
No 210
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=34.10 E-value=77 Score=34.04 Aligned_cols=50 Identities=6% Similarity=0.057 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
+.+.|....+.++.+|+..||||++|+ ||-.+-.+.++.+|-|+.=-++|
T Consensus 238 ~~~em~~ra~~a~~~G~~~vmv~~~~~-------------G~~al~~L~~~~~l~ihaHra~~ 287 (424)
T cd08208 238 EVDRLMELHDVAVRNGANALLINAMPV-------------GLSAVRMLRKHAQVPLIAHFPFI 287 (424)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeeecc-------------cHHHHHHHHhcCCCeEEeccCcc
Confidence 468899999999999999999999886 23445555556665444433444
No 211
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=34.08 E-value=86 Score=32.45 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeee--eeecCCCccccchHHHHHHHHHHHcCC
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWG--IVEGWNPQKYAWSGYRELFNIIREFNL 321 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWG--iVE~~~P~qYdWSgY~~Lf~mir~~GL 321 (454)
.+++-+.---++.+++|+||+|+.|-== ..=++++||.+...+.+|.+-++..+.
T Consensus 226 Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 226 GRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred cchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 3445555555677899999999998621 222367999999999999998887654
No 212
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=34.06 E-value=41 Score=35.31 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=31.6
Q ss_pred HHHHHHhc-CcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 275 EISHMKAL-NVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 275 ~L~aLK~~-GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
.|..+++. ||+||..-..+--+ ....+-..-+++-++|.++||+|-||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 46777886 99999998876322 12223334567778899999999998764
No 213
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=33.72 E-value=65 Score=34.32 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
...|....+.++++|+.+||+|++|. -|++-+.|.+- .+.+|-|+.=-+||
T Consensus 218 ~~em~~ra~~a~~~G~~~~mv~~~~~----------G~~~~~~l~~~-~~~~lpihaHra~~ 268 (407)
T TIGR03332 218 TFDLKDKAKRAAELGADVLLFNVFAY----------GLDVLQSLAED-DEIPVPIMAHPAVS 268 (407)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccc----------ChHHHHHHHhc-CCCCcEEEEecCcc
Confidence 35699999999999999999999875 34444444332 24566665555566
No 214
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=33.49 E-value=37 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=19.6
Q ss_pred CCCchhHhhHHHHHHHHHHHhhhh
Q 012883 383 NGRTGIEVYFDFMRSFRTEFDDLF 406 (454)
Q Consensus 383 ~GRTpiq~Y~DFMrSFr~~F~d~l 406 (454)
++++....+++|.++||++|..-.
T Consensus 37 ~~~~~~~~~~~f~~~fk~nf~~~~ 60 (77)
T PF04854_consen 37 RDEEDSYLFRDFWRAFKQNFKQSL 60 (77)
T ss_pred cCCccChHHHHHHHHHHHHHHHHH
Confidence 445567799999999999998754
No 215
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=33.34 E-value=85 Score=30.82 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=42.4
Q ss_pred hcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCC-----CCCCCcccccchHHHhhhc
Q 012883 281 ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGA-----NDSGDAWISLPQWVMEIGK 353 (454)
Q Consensus 281 ~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGG-----NVGD~~~IPLP~WV~e~g~ 353 (454)
.+|++.+.+-. -||=..|.++.+.+++.|+.+.++..+---.+ ....-|.|.+|.|+.+.-+
T Consensus 170 ~aGA~f~iTQ~-----------~fd~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~Gv~iP~~~~~~l~ 236 (287)
T PF02219_consen 170 DAGADFIITQP-----------FFDAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLCGVDIPDELIERLE 236 (287)
T ss_dssp HTTESEEEEEE------------SSHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHHT-EEEHHHHHHHH
T ss_pred HCCCCEEeccc-----------cCCHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhccCccCCHHHHHHHH
Confidence 58999877643 58888999999999999997777766332110 0001345789999998644
No 216
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=33.33 E-value=98 Score=29.25 Aligned_cols=57 Identities=30% Similarity=0.479 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
+.+++++.+++||+ ++|-|.|=+=||.-....| ...-++++..+-+.| +-+|+.=|.
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G--~DvIiG~H~ 214 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAG--ADVVIGHHP 214 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcC--CCEEEcCCC
Confidence 46889999999998 7999999999996432223 223367777777778 567777774
No 217
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=33.28 E-value=36 Score=33.58 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.0
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEee
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNC 291 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDV 291 (454)
+|+++. +++|.++|||||..|.
T Consensus 238 VN~~~~----~~~l~~~GVDgIiTD~ 259 (263)
T cd08580 238 INTADD----YRLAKCLGADAVMVDS 259 (263)
T ss_pred eCCHHH----HHHHHHcCCCEEEeCC
Confidence 456654 4578999999999983
No 218
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=33.17 E-value=72 Score=33.96 Aligned_cols=50 Identities=16% Similarity=0.036 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
+.+.|....+.++++|..+||||+++. ||-.|-.+.++.+|-|+.=-++|
T Consensus 221 ~~~em~~ra~~~~~~G~~~~mv~~~~~-------------G~~~l~~l~~~~~l~IhaHra~~ 270 (406)
T cd08207 221 DIDEMRRNHDLVVEAGGTCVMVSLNSV-------------GLSGLAALRRHSQLPIHGHRNGW 270 (406)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecccc-------------chHHHHHHHhcCCceEEECCCcc
Confidence 468999999999999999999999875 34445555566666555555555
No 219
>TIGR03586 PseI pseudaminic acid synthase.
Probab=33.08 E-value=1.2e+02 Score=31.42 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=43.5
Q ss_pred cEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeee--eeecCCCc---------------------cccc
Q 012883 250 PVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWG--IVEGWNPQ---------------------KYAW 306 (454)
Q Consensus 250 pVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWG--iVE~~~P~---------------------qYdW 306 (454)
|+||.+-+++ |-+| +.+....-+++.|++|+|.|-.--|=- ++....+. .+.+
T Consensus 1 ~~~iIAEiG~-NH~G---~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 76 (327)
T TIGR03586 1 PPFIIAELSA-NHNG---SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPW 76 (327)
T ss_pred CCEEEEEECC-CCCC---hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCH
Confidence 4566666654 3333 346666677888999999887664311 11111111 1123
Q ss_pred hHHHHHHHHHHHcCCceEE
Q 012883 307 SGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 307 SgY~~Lf~mir~~GLKlqv 325 (454)
.-|++|++.+++.||.+-.
T Consensus 77 e~~~~L~~~~~~~Gi~~~s 95 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFS 95 (327)
T ss_pred HHHHHHHHHHHHhCCcEEE
Confidence 4478999999999998654
No 220
>PRK15108 biotin synthase; Provisional
Probab=32.75 E-value=64 Score=32.91 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCcceEEEeee--eeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVW--WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
...|++||++|||+|-+++= -+.-..--+ .-+|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~-~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIIT-TRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCC-CCCHHHHHHHHHHHHHcCCce
Confidence 67899999999998877541 111111101 125666777778888889855
No 221
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=32.36 E-value=2.2e+02 Score=28.64 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=54.6
Q ss_pred ccCHHHHHHHHHHHHhcC--cceEEEeeeeeeeecCCCccccch-----HHHHHHHHHHHcCCceEEEEEeeccCCCCCC
Q 012883 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~G--VdGVmVDVWWGiVE~~~P~qYdWS-----gY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD 338 (454)
..+.+.+..-++.+++.| +|+|.+|+=|.- +-+.|+|. .-+++++-.++.|+|+.+++.=|-+-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~----- 90 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV----- 90 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC-----
Confidence 346677777777777755 689999966541 23335554 35789999999999997665433321
Q ss_pred CcccccchHHHhhhcCCCCeEEecCCCC
Q 012883 339 DAWISLPQWVMEIGKGNQDIFFTDREGR 366 (454)
Q Consensus 339 ~~~IPLP~WV~e~g~~npDIfyTDrsG~ 366 (454)
+. .-| +.+++.+ .+.|.++.+|.
T Consensus 91 ~~--~~~--~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 91 DP--GYD--VYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred CC--CCh--HHHHHHH-CCeEEECCCCC
Confidence 00 112 2334433 47888888774
No 222
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=32.05 E-value=44 Score=34.33 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
+++.|....+.++++|+.+||||+-+. -|++-..|.+.+++.+|-|+.
T Consensus 93 ~~~em~~ra~~a~~~G~~~vmv~~~~~----------G~~~~~~l~~~~~~~~~~ih~ 140 (309)
T PF00016_consen 93 TPDEMIERAEYAKEAGANAVMVNVLTA----------GFSALQSLAEDARDNGLPIHA 140 (309)
T ss_dssp SHHHHHHHHHHHHHHTGSEEEEEHHHH----------CHHHHHHHHHHHHHHTSEEEE
T ss_pred cHHHHHHhhhhhhhhccchhhcccccc----------cccccchhhhhhcccceeeee
Confidence 368999999999999999999997654 578888899999988854444
No 223
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=31.87 E-value=1.2e+02 Score=31.34 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHHHHH-----HHHHcCCceEEEEEeeccCCCCCCC
Q 012883 269 PELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFN-----IIREFNLKVQVVMAFHEYGANDSGD 339 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~Lf~-----mir~~GLKlqvVMSFHqCGGNVGD~ 339 (454)
..+++..++.|+.+||.-|-+|= =|+.-. |.+- |..|.+.+- .++..|.++++ +.|-|.|+..+.
T Consensus 157 A~al~~ev~~l~~agi~~iQiDEpal~~~~---~~~~-~~~~l~~~~~~~~~~~~~~~~d~~i--~~HiCy~e~~~~ 227 (330)
T COG0620 157 ALALRDEVKDLEDAGIKIIQIDEPALREGL---PLRR-DDDYLEWAVEAINLAAAGVGADTQI--HLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEeechhhhhcCC---cccc-chHHHHHHHHHHHHHHhcCCCCcEE--EEEEECCcccch
Confidence 47888999999999999999985 666433 2222 344544433 23334555554 459999866543
No 224
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=31.60 E-value=96 Score=37.10 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=53.4
Q ss_pred cccCCCCCCCCCCCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeee--eee-ecC----------C
Q 012883 234 VRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWW--GIV-EGW----------N 300 (454)
Q Consensus 234 ~~~~~~~~~~~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWW--GiV-E~~----------~ 300 (454)
+.-.+|.++|+..+.++. +.-...| +..+|...|..||.+||..|.+-=-. +-| |.. +
T Consensus 453 vIYElHVrdFt~d~~~~~------~~~~~~G---tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~ 523 (1111)
T TIGR02102 453 IIYEAHVRDFTSDPAIAG------DLTAQFG---TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASS 523 (1111)
T ss_pred EEEEEechhhCcCCCCCc------ccccCCc---CHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccc
Confidence 445677788885443331 0001113 45889999999999999999653221 111 110 1
Q ss_pred Cccccch-------------------------HHHHHHHHHHHcCCceEEEEEeecc
Q 012883 301 PQKYAWS-------------------------GYRELFNIIREFNLKVQVVMAFHEY 332 (454)
Q Consensus 301 P~qYdWS-------------------------gY~~Lf~mir~~GLKlqvVMSFHqC 332 (454)
...|+|- .+++|++.+.+.||+|..=+-|--|
T Consensus 524 ~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt 580 (1111)
T TIGR02102 524 NTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHT 580 (1111)
T ss_pred ccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 2345554 3777888888899987665556334
No 225
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=31.53 E-value=41 Score=33.94 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=44.3
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEE--eecc
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMA--FHEY 332 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMS--FHqC 332 (454)
++|......+...++|+ .|+-.|++|||=|-- ..|-.| .+. ..+++++.|++...+ .-+||| -|.|
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~Wdg~~--~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~s~yPvIlslE~Hcs 100 (254)
T cd08633 24 DQLMSQSRVDMYAWVLQ-AGCRCVEVDCWDGPD--GEPIVHHGYTLTSKILFKDVIETINKYAFIKNEYPVILSIENHCS 100 (254)
T ss_pred CccCCccCHHHHHHHHH-cCCcEEEEEeecCCC--CCcEEeeCCCcccCcCHHHHHHHHHHHhccCCCCCEEEEecccCC
Confidence 56666667788888886 799999999998721 113222 222 368999999997654 344555 5755
No 226
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.53 E-value=45 Score=28.90 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeee---eeeec-CCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWW---GIVEG-WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWW---GiVE~-~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVG 337 (454)
.+.++..+...+.+|+..|.+-..+ ..... +.....-...+++|.+++++.| +.+++|-+.+...
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g----v~i~lE~~~~~~~ 138 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYG----VRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHT----SEEEEE-SSSSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhc----ceEEEecccCccc
Confidence 5788899999999999999988553 11110 0111122236778888888888 4466676665443
No 227
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=31.50 E-value=75 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHc
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~ 319 (454)
.+-++.++..|.|||.+|..|.-.+ ...|.++++.+|+.
T Consensus 89 ~~lv~~~~~~~~DGIdiDwE~~~~~--------~~~~~~fv~~Lr~~ 127 (253)
T cd06545 89 DKIINYVVSYNLDGIDVDLEGPDVT--------FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHHHhCCCceeEEeeccCcc--------HhHHHHHHHHHHHH
Confidence 4455667889999999999886432 35677777776654
No 228
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=31.49 E-value=77 Score=33.34 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHH--cCCceEEEEEeec
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE--FNLKVQVVMAFHE 331 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~--~GLKlqvVMSFHq 331 (454)
+.+.|....+.++++|..+||||+++. -|+. |-.+.++ .+|-|+.=-+||.
T Consensus 205 ~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~---l~~l~~~~~~~l~IhaHrA~~g 257 (366)
T cd08148 205 GTFEIIERAERALELGANMLMVDVLTA----------GFSA---LQALAEDFEIDLPIHVHRAMHG 257 (366)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccc----------chHH---HHHHHHhCcCCcEEEecccccc
Confidence 348899999999999999999999875 2444 4444443 4777777667774
No 229
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=31.43 E-value=1.1e+02 Score=28.53 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcC
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~G 320 (454)
|.++++..++.||..||+.|.|=.=|+.+-. ..=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np--------~hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNP--------EHEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCH--------HHHHHHHHHHHhcC
Confidence 6799999999999999999999877775543 23567788888776
No 230
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=31.06 E-value=42 Score=32.56 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=27.9
Q ss_pred HHHHhcCcceEEEeeeee----eeec----CCCccccch-HHHHHHHHHHHcC
Q 012883 277 SHMKALNVDGVIVNCWWG----IVEG----WNPQKYAWS-GYRELFNIIREFN 320 (454)
Q Consensus 277 ~aLK~~GVdGVmVDVWWG----iVE~----~~P~qYdWS-gY~~Lf~mir~~G 320 (454)
...-++|+++|++|||+- +|=- ..+.+-=|+ +|..|.++++..+
T Consensus 16 ~~Al~~g~~svEaDV~l~dg~l~V~Hd~~~l~~~~tl~~Lyl~pL~~~l~~~n 68 (228)
T cd08577 16 YDALSAGFGSIEADVWLVNGDLLVAHDEVDLSPARTLESLYLDPLLEILDQNN 68 (228)
T ss_pred HHHHHcCCCEEEEeEEEECCEEEEEcChhHcCccCCHHHHhHHHHHHHHHHcC
Confidence 344567999999999985 1110 112333344 5677889888765
No 231
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=31.04 E-value=65 Score=32.27 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=52.6
Q ss_pred CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
..+|+||-+-.|--+- .-...+...|+.+|.+|.+.|+|.- +--...=.-..++.+++++.|||+.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3578888776665442 2267899999999999999999842 33334445567889999999999776
Q ss_pred EEEeeccCCCCCCCcccccchHHHhh
Q 012883 326 VMAFHEYGANDSGDAWISLPQWVMEI 351 (454)
Q Consensus 326 VMSFHqCGGNVGD~~~IPLP~WV~e~ 351 (454)
=+.-.. .+......+..|+..+
T Consensus 132 EvG~K~----~~~~~~~~~~~~i~~~ 153 (244)
T PF02679_consen 132 EVGKKD----PESDFSLDPEELIEQA 153 (244)
T ss_dssp EES-SS----HHHHTT--CCHHHHHH
T ss_pred cccCCC----chhcccCCHHHHHHHH
Confidence 543221 1112222356787664
No 232
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=30.73 E-value=1.8e+02 Score=33.98 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc-------------cchHHHHHHHHHHHcCCceEEEEEeeccCC
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY-------------dWSgY~~Lf~mir~~GLKlqvVMSFHqCGG 334 (454)
+.+.+.+.|..||.+||+.|.+---+--.. .+...| ....+++|.+.+++.||+|..=+-+.-++.
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~-gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~ 92 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVP-GSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAV 92 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCC-CCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 347899999999999999996654332111 122333 367899999999999999988777766663
Q ss_pred C
Q 012883 335 N 335 (454)
Q Consensus 335 N 335 (454)
+
T Consensus 93 ~ 93 (825)
T TIGR02401 93 H 93 (825)
T ss_pred c
Confidence 3
No 233
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=30.23 E-value=1.6e+02 Score=22.42 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
++..++++|+.|.+.|- |.+-. +-.++.++.+.+++.|+|+.+
T Consensus 17 ~~~~~~~a~~~g~~~v~------iTDh~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIA------ITDHG-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEE------EeeCC-----cccCHHHHHHHHHHcCCeEEE
Confidence 56778889999999984 45543 456688999999999988754
No 234
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.16 E-value=77 Score=32.71 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCcceEEEeee--------------------e-e--eeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 270 ELIRQEISHMKALNVDGVIVNCW--------------------W-G--IVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVW--------------------W-G--iVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
+.-+.-+.+.|.+|+|.|-.--| | | +.|--.--.+.|..|++|++.+++.||.+-.
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~s 94 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLS 94 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEE
Confidence 55556677889999999965432 2 2 0010111235578899999999999997643
No 235
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=30.15 E-value=1.1e+02 Score=29.85 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHH
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE 318 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~ 318 (454)
-+++-++-|+..|.|||.+|.-|. ..-+...|..|++.+++
T Consensus 91 fi~~iv~~l~~~~~DGidiDwE~~-------~~~d~~~~~~fl~~lr~ 131 (313)
T cd02874 91 LINNILALAKKYGYDGVNIDFENV-------PPEDREAYTQFLRELSD 131 (313)
T ss_pred HHHHHHHHHHHhCCCcEEEecccC-------CHHHHHHHHHHHHHHHH
Confidence 345555667789999999996442 22367778888877776
No 236
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=30.03 E-value=1e+02 Score=31.98 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=43.6
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccch-----HHHHHHHHHHHcCCceEE
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQV 325 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWS-----gY~~Lf~mir~~GLKlqv 325 (454)
-|.+.+.+.+...-+.||.+|.+-+...+| +..-.-|.|. ||+-|++.+++.||.+-.
T Consensus 100 PCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 100 PCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred cCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 467889999999999999999985544444 3222235554 499999999999998654
No 237
>PTZ00445 p36-lilke protein; Provisional
Probab=29.88 E-value=1.2e+02 Score=30.20 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=47.3
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccch------------HHHHHHHHHHHcCCceEEEE
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS------------GYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWS------------gY~~Lf~mir~~GLKlqvVM 327 (454)
++..+....--+.||..|+..|.+|.==-+|...+.+-.++. ..+.++..+++.|++|-+|=
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVT 98 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVT 98 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEE
Confidence 455566666677899999999999986666665555555553 47889999999999997763
No 238
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=29.76 E-value=1.3e+02 Score=28.83 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcC
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~G 320 (454)
.|++++++.++.|.+.||+||.+---=| .-....++.+++|++.+.+..
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstG-----E~~~ls~~Er~~l~~~~~~~~ 63 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTG-----EAPTLTDEERKEVIEAVVEAV 63 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCc-----ccccCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999997643222 134567888899988887764
No 239
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=29.75 E-value=1.5e+02 Score=30.12 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchH
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~W 347 (454)
+.++....|+.+|++|+.- |||. .|..+-=. =..|.++.++.|+.|.+.=-||.- --.|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GRd-~~~l~~is~~tGv~II~~TG~y~~---------~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGRD-VEALREISRRTGVNIIASTGFYKE---------PFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-SG---------GCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCcC-HHHHHHHHHHhCCeEEEeCCCCcc---------ccCChh
Confidence 7799999999999999876 4554 23322211 267778888999888877778852 146899
Q ss_pred HHhh
Q 012883 348 VMEI 351 (454)
Q Consensus 348 V~e~ 351 (454)
+.+.
T Consensus 97 ~~~~ 100 (308)
T PF02126_consen 97 VREA 100 (308)
T ss_dssp HHTS
T ss_pred hhcC
Confidence 8753
No 240
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=29.64 E-value=39 Score=35.63 Aligned_cols=31 Identities=16% Similarity=0.488 Sum_probs=28.5
Q ss_pred eeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 293 WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 293 WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
|...|. .++.|+|..=.++++.+|++||+++
T Consensus 69 we~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lh 99 (345)
T COG3693 69 WEAIEP-ERGRFNFEAADAIANFARKHNMPLH 99 (345)
T ss_pred cccccC-CCCccCccchHHHHHHHHHcCCeec
Confidence 888888 6899999999999999999999865
No 241
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=29.54 E-value=1.4e+02 Score=29.09 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=35.4
Q ss_pred HHHH-HHHHHHHhcCcceEEEeeeeeeeecCCCcc--ccchHHHHHHHHHHHc-------CCceEEEEEeec
Q 012883 270 ELIR-QEISHMKALNVDGVIVNCWWGIVEGWNPQK--YAWSGYRELFNIIREF-------NLKVQVVMAFHE 331 (454)
Q Consensus 270 ~al~-a~L~aLK~~GVdGVmVDVWWGiVE~~~P~q--YdWSgY~~Lf~mir~~-------GLKlqvVMSFHq 331 (454)
+.|. +-++.|+..|.|||.+| |-- |.. -+...|..|++.+|+. +-++++.|+.+.
T Consensus 93 ~~fi~~i~~~~~~~~~DGidiD--wE~-----~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v~~ 157 (334)
T smart00636 93 KKFIDSIVSFLKKYGFDGIDID--WEY-----PGARGDDRENYTALLKELREALDKEGAEGKGYLLTIAVPA 157 (334)
T ss_pred HHHHHHHHHHHHHcCCCeEEEC--CcC-----CCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEEEecC
Confidence 4444 44477889999999999 432 222 3566788877776643 235666666663
No 242
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=29.54 E-value=1.2e+02 Score=30.00 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHc
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~ 319 (454)
+-+++-++.++..|.|||.+|.-+. ..-+...|..+++.+++.
T Consensus 91 ~fi~~iv~~~~~~~~dGidiD~E~~-------~~~d~~~~~~fl~eL~~~ 133 (298)
T cd06549 91 KFIANIAAYLERNQADGIVLDFEEL-------PADDLPKYVAFLSELRRR 133 (298)
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCC-------ChhHHHHHHHHHHHHHHH
Confidence 4556777888999999999998753 223677788777766543
No 243
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.20 E-value=93 Score=30.50 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=35.7
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeee-eeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWW-GIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWW-GiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
..+.++..++ +.++.-++|.|.+|+=| | --+..+++++|++++|+++.+
T Consensus 235 E~~~~~~~~~---~~~~~~~~d~v~~~~~~~G----------Gi~~~~~~~~~a~~~gi~~~~ 284 (316)
T cd03319 235 ESCFSAADAA---RLAGGGAYDGINIKLMKTG----------GLTEALRIADLARAAGLKVMV 284 (316)
T ss_pred CCCCCHHHHH---HHHhcCCCCEEEEeccccC----------CHHHHHHHHHHHHHcCCCEEE
Confidence 3456666665 44677899999999765 3 123479999999999987654
No 244
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=29.02 E-value=1.6e+02 Score=25.55 Aligned_cols=72 Identities=7% Similarity=0.072 Sum_probs=41.4
Q ss_pred CCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCC---------C-ccccchHHHHHHHHH
Q 012883 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN---------P-QKYAWSGYRELFNII 316 (454)
Q Consensus 247 ~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~---------P-~qYdWSgY~~Lf~mi 316 (454)
+.+++++|-|.-.-.....-...+.+.+.++++.+..-.-.-||+|+.+.+..+ + -..+-.||+.+++.+
T Consensus 88 ~~~~iil~~~~p~~~~~~~~~~~~~~n~~~~~~a~~~~~v~~vD~~~~~~~~~~~~~~~~~~~DGlH~n~~Gy~~~a~~l 167 (171)
T cd04502 88 PDTPIAIISIKPSPARWALRPKIRRFNALLKELAETRPNLTYIDVASPMLDADGKPRAELFQEDGLHLNDAGYALWRKVI 167 (171)
T ss_pred CCCcEEEEEecCCCcchhhHHHHHHHHHHHHHHHhcCCCeEEEECcHHHhCCCCCcChhhcCCCCCCCCHHHHHHHHHHH
Confidence 467788876432211100011245667777777553223457898887654322 2 256678999999988
Q ss_pred HH
Q 012883 317 RE 318 (454)
Q Consensus 317 r~ 318 (454)
.+
T Consensus 168 ~~ 169 (171)
T cd04502 168 KP 169 (171)
T ss_pred Hh
Confidence 65
No 245
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=29.01 E-value=74 Score=33.69 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=45.4
Q ss_pred ccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEee---------------------eeee-----eecCCCc
Q 012883 249 IPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNC---------------------WWGI-----VEGWNPQ 302 (454)
Q Consensus 249 VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDV---------------------WWGi-----VE~~~P~ 302 (454)
-++|+..-+.. |-+|.|+.. ..-+++.|.+|+|.|-.-- ||+. +|. -
T Consensus 13 ~~~~iIAEig~-NHnG~le~A---~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~---~ 85 (347)
T COG2089 13 KKPFIIAEIGA-NHNGDLERA---KELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEE---A 85 (347)
T ss_pred CCcEEEeeecc-cccCcHHHH---HHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHH---h
Confidence 35566666553 445556433 4457888999999997765 8883 443 2
Q ss_pred cccchHHHHHHHHHHHcCC
Q 012883 303 KYAWSGYRELFNIIREFNL 321 (454)
Q Consensus 303 qYdWSgY~~Lf~mir~~GL 321 (454)
..+|.-+.+|++.|++.|+
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi 104 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGI 104 (347)
T ss_pred cCCHHHHHHHHHHHHHcCe
Confidence 3445559999999999997
No 246
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.99 E-value=5.5e+02 Score=25.69 Aligned_cols=131 Identities=12% Similarity=0.205 Sum_probs=79.9
Q ss_pred cccCHHHHHHHHHHHHhcCcceEEE---e--eeeeeeecCC-CccccchHHHHHHHHHHHcCCceEEEEEe---------
Q 012883 265 QLVDPELIRQEISHMKALNVDGVIV---N--CWWGIVEGWN-PQKYAWSGYRELFNIIREFNLKVQVVMAF--------- 329 (454)
Q Consensus 265 ~l~~~~al~a~L~aLK~~GVdGVmV---D--VWWGiVE~~~-P~qYdWSgY~~Lf~mir~~GLKlqvVMSF--------- 329 (454)
.+-..+.|+..+..|...|..++++ | -+-|.-|-.. .+.|.=.-+++|.+.+++.|+.|.|-+-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 4666799999999999999988876 3 1233333322 56777788999999999999999987642
Q ss_pred ----eccCCCCC---CCcccccch---HHHhhhcCCCCeEEecCCCCccCceeeeecCcccccC---------CCchhHh
Q 012883 330 ----HEYGANDS---GDAWISLPQ---WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLN---------GRTGIEV 390 (454)
Q Consensus 330 ----HqCGGNVG---D~~~IPLP~---WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~---------GRTpiq~ 390 (454)
+... .+. +..++.-|. +|.+.-++--++ |. .+++-+|+|+..-+. .++..+.
T Consensus 92 ~~~~~~l~-~~~~~~~~l~~~~~~t~~fi~~li~ev~~~-f~-------s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 92 HPEFRHLR-EVDDPPQTLCPGEPKTYDFIEEMIRQVLEL-HP-------SKYIHIGMDEAYDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred Cccccccc-ccCCCCCccCCCChhHHHHHHHHHHHHHHh-CC-------CCeEEECCCcccccCCCHHHHHhcCCCHHHH
Confidence 2111 111 112222222 111111110111 22 588999999987652 3456677
Q ss_pred hHHHHHHHHHHHhh
Q 012883 391 YFDFMRSFRTEFDD 404 (454)
Q Consensus 391 Y~DFMrSFr~~F~d 404 (454)
|.+|++.-.+....
T Consensus 163 ~~~~~~~v~~~v~~ 176 (301)
T cd06565 163 YLEHLKKVLKIIKK 176 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887766555543
No 247
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=28.27 E-value=95 Score=29.97 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
.+...++.+-.+|+++|.+=+.+|- .....+- .--+++.+++++.|+.+.++
T Consensus 91 ~~~~~v~~al~~Ga~~v~~~~~~g~---~~~~~~~-~~~~~i~~~~~~~g~~liv~ 142 (258)
T TIGR01949 91 RIVTTVEDAIRMGADAVSIHVNVGS---DTEWEQI-RDLGMIAEICDDWGVPLLAM 142 (258)
T ss_pred eeeeeHHHHHHCCCCEEEEEEecCC---chHHHHH-HHHHHHHHHHHHcCCCEEEE
Confidence 4556677888999999999998883 1111111 33455666677789887764
No 248
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=28.11 E-value=1.5e+02 Score=35.16 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=76.7
Q ss_pred CCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE---------------
Q 012883 262 NFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV--------------- 326 (454)
Q Consensus 262 ~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV--------------- 326 (454)
.+-.||+-+.|+-.+.+.+..|-=.=..=|+=|..-..+-.+|+-.||.+|++-+.++|..+-.|
T Consensus 649 iFDsLNwv~~M~vaidAV~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~L 728 (1149)
T COG1038 649 IFDSLNWVEQMRVAIDAVREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRL 728 (1149)
T ss_pred eehhhcchhhhhhHHHHHHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHH
Confidence 33457888999999999999994333445788877666788999999999999999999888776
Q ss_pred -----------EEeeccCCCCCCCcccccchHH--HhhhcCCCCeEEecCCCCccCceee
Q 012883 327 -----------MAFHEYGANDSGDAWISLPQWV--MEIGKGNQDIFFTDREGRRNTECLS 373 (454)
Q Consensus 327 -----------MSFHqCGGNVGD~~~IPLP~WV--~e~g~~npDIfyTDrsG~Rn~EcLS 373 (454)
+.||-. |+.-+.+-..+ +++|.+--|.....=+|..+.=||+
T Consensus 729 i~aLr~~~dlPIHlHTH-----DTsG~~~at~~aA~~AGvDivD~A~~smsG~TSQPsl~ 783 (1149)
T COG1038 729 ISALRETVDLPIHLHTH-----DTSGNGVATYLAAVEAGVDIVDVAMASMSGLTSQPSLN 783 (1149)
T ss_pred HHHHHHhcCCceEEecc-----CCCccHHHHHHHHHHcCCchhhhhhhhccCCCCCccHH
Confidence 224432 22222333332 3446666677777788999988885
No 249
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=27.95 E-value=1.5e+02 Score=30.08 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeec----CCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCC
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~----~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGN 335 (454)
.+-+..+.-+.-..+.|.+.|.||..|---+. .--..+.+.--.+|.+.+|+.|.+|...+..+ .+||
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~-~~~~ 100 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSE-TGGN 100 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECC-HTTB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCC-cchh
Confidence 35678888888899999999999999964221 11245667779999999999999998887644 3444
No 250
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=27.84 E-value=4e+02 Score=29.47 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=43.3
Q ss_pred HHHHHHHHH---hcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCC---CCCc-cccc
Q 012883 272 IRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAND---SGDA-WISL 344 (454)
Q Consensus 272 l~a~L~aLK---~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNV---GD~~-~IPL 344 (454)
++..+..|| .+|++.+.+-+- ||=..|.++.+.++..+++|.+=+.--..-.+. -..+ .|.+
T Consensus 477 ~~~d~~~L~~Ki~aGAdf~iTQ~~-----------fd~~~~~~~~~~~~~~~vpIi~GImPi~s~k~~~~~~~~~~Gv~v 545 (612)
T PRK08645 477 LDKEVKRLEKKIEAGADYFITQPV-----------YDEELIEELLEATKHLGVPIFIGIMPLVSYRNAEFLHNEVPGITL 545 (612)
T ss_pred hHHHHHHHHHHHHcCCCEEEeccc-----------CCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHHHHHHhCCCCCCC
Confidence 445554444 589999987654 556779999999996666654432210000000 0122 4789
Q ss_pred chHHHhhhcC
Q 012883 345 PQWVMEIGKG 354 (454)
Q Consensus 345 P~WV~e~g~~ 354 (454)
|.|+.+.-+.
T Consensus 546 P~~l~~~l~~ 555 (612)
T PRK08645 546 PEEIRERMRA 555 (612)
T ss_pred CHHHHHHHHh
Confidence 9999986433
No 251
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=27.75 E-value=1.5e+02 Score=28.51 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHHHH-HHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHH
Q 012883 270 ELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR 317 (454)
Q Consensus 270 ~al~a~L-~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir 317 (454)
+.|.+.| .-|++.|.|||.+|.-+..-... .-++..|..|+..++
T Consensus 101 ~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~---~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 101 QNFINNIVSFLKKYGFDGIDIDWEYPSSSGD---PQDKDNYTAFLKELR 146 (343)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEESSTTSTSS---TTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcccCcceeeeeeeecccccc---chhhhhhhhhhhhhh
Confidence 4444444 55778999999999744322110 238888988888776
No 252
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=27.48 E-value=1.4e+02 Score=29.72 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=40.7
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc-c-----hHHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-W-----SGYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd-W-----SgY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|.-....+.-.++| ..|+-.|++|||=| +...|..|- | -..+++++.||+.+.+ .-+|||+
T Consensus 24 ~Ql~~~ss~~~y~~aL-~~GcRcvElD~Wdg--~~~ep~V~HG~t~ts~i~f~dvl~~I~~~aF~~s~yPvILsl 95 (228)
T cd08599 24 NQLSSRSSTAPIIEAL-LRGCRVIELDLWPG--GRGDICVLHGGTLTKPVKFEDCIKAIKENAFTASEYPVIITL 95 (228)
T ss_pred CccCCccCHHHHHHHH-HhCCCEEEEEeecC--CCCCeEEEeCCCCcCCcCHHHHHHHHHHHhccCCCCCEEEEE
Confidence 3454445555655666 66999999999987 222344432 1 2368899999998874 4566665
No 253
>PLN02489 homocysteine S-methyltransferase
Probab=27.44 E-value=1.4e+02 Score=30.51 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
+.++.+++.|.+.|||.|.+.----+-| -+.+++.+++.+..+.+++||.
T Consensus 167 ~~~~~qi~~l~~~gvD~i~~ET~~~l~E-----------~~a~~~~~~~~~~~~p~~iS~t 216 (335)
T PLN02489 167 DFHRRRLQVLAEAGPDLIAFETIPNKLE-----------AQAYVELLEEENIKIPAWISFN 216 (335)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCChHH-----------HHHHHHHHHHcCCCCeEEEEEE
Confidence 4456678888899999887654443333 5678888888876677777775
No 254
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=27.42 E-value=1.6e+02 Score=29.64 Aligned_cols=68 Identities=10% Similarity=0.203 Sum_probs=43.7
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee------ccCCCCCCCcccccchHH
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH------EYGANDSGDAWISLPQWV 348 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH------qCGGNVGD~~~IPLP~WV 348 (454)
.|++=-.+|++.+.+- --||-..|.++.+.+++.|..+.++..+- +-- ....-|.|.+|.|+
T Consensus 168 ~Lk~K~~aGA~~~iTQ-----------~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~-~~~~~~Gv~vP~~l 235 (296)
T PRK09432 168 NLKRKVDAGANRAITQ-----------FFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLK-KFADMTNVRIPAWM 235 (296)
T ss_pred HHHHHHHcCCCeeecc-----------cccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHH-HHHHccCCCCCHHH
Confidence 3444335999876542 36788899999999999997766654321 000 00013447899999
Q ss_pred HhhhcC
Q 012883 349 MEIGKG 354 (454)
Q Consensus 349 ~e~g~~ 354 (454)
.+.-++
T Consensus 236 ~~~l~~ 241 (296)
T PRK09432 236 AKMFDG 241 (296)
T ss_pred HHHHHh
Confidence 986544
No 255
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=27.25 E-value=95 Score=33.05 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccch--HHHHHHHHHHHcCCceEEEEE--eecc
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS--GYRELFNIIREFNLKVQVVMA--FHEY 332 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWS--gY~~Lf~mir~~GLKlqvVMS--FHqC 332 (454)
.|..++++||+||.... -.- |.-=.|. --+++-++|.++||.|-||=| .|++
T Consensus 15 ~l~~irQ~Gv~gIV~aL----h~i--P~g~~W~~~~I~~~k~~ie~~Gl~~~vvESvPvhed 70 (362)
T COG1312 15 TLEDIRQAGVKGVVTAL----HHI--PAGEVWPVEEILKRKEEIESAGLTWSVVESVPVHED 70 (362)
T ss_pred cHHHHHHhCccceeccC----CCC--CCCCcCcHHHHHHHHHHHHHcCceEEeecCCCHHHH
Confidence 46777888999997532 221 3322344 457888999999999999988 4554
No 256
>PLN02962 hydroxyacylglutathione hydrolase
Probab=27.23 E-value=1.8e+02 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCceEEEEEeeccCCCCCC
Q 012883 311 ELFNIIREFNLKVQVVMAFHEYGANDSG 338 (454)
Q Consensus 311 ~Lf~mir~~GLKlqvVMSFHqCGGNVGD 338 (454)
++.+.+++.|+++..|+.+|...--+|.
T Consensus 50 ~~l~~l~~~g~~i~~Il~TH~H~DHigg 77 (251)
T PLN02962 50 RDLSLVKELGLKLIYAMNTHVHADHVTG 77 (251)
T ss_pred HHHHHHHHCCCeeEEEEcCCCCchhHHH
Confidence 4456667777777777777766544444
No 257
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=27.05 E-value=58 Score=31.29 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=15.2
Q ss_pred HHHHHHhcCcceEEEeeeee
Q 012883 275 EISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWG 294 (454)
.+++...+|+|||++||+=-
T Consensus 21 Af~~A~~~Gad~iE~DV~lT 40 (252)
T cd08574 21 SFEKALEHGVYGLETDVTIS 40 (252)
T ss_pred HHHHHHHcCCCEEEEEEeEc
Confidence 33444568999999999975
No 258
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=26.96 E-value=3.2e+02 Score=26.52 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
+.+..-++++...|+|+|||==- ...+-.--.++++.+|+. -++-+|| |
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS---------~gvt~~~~~~~v~~ik~~-~~lPvil-f 59 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGS---------LGIVESNLDQTVKKIKKI-TNLPVIL-F 59 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc---------CCCCHHHHHHHHHHHHhh-cCCCEEE-E
Confidence 44555556889999999988322 223445567788889885 2555555 6
No 259
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.93 E-value=36 Score=30.75 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=14.8
Q ss_pred HHHHHHcCCceEEEEEeeccCCCCCC
Q 012883 313 FNIIREFNLKVQVVMAFHEYGANDSG 338 (454)
Q Consensus 313 f~mir~~GLKlqvVMSFHqCGGNVGD 338 (454)
+++|++.--..-+|| |||.||--..
T Consensus 14 l~Li~~l~~~hgpvm-FHQSGGCCDG 38 (116)
T COG3564 14 LDLIAELQAEHGPVM-FHQSGGCCDG 38 (116)
T ss_pred HHHHHHHHHhcCCEE-EeccCCccCC
Confidence 344444444444666 9999987433
No 260
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=26.84 E-value=1.8e+02 Score=24.84 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCcceEEEeeeeee---eecCCCccccchHHHHHHHHHHHcC-CceEEEEE
Q 012883 273 RQEISHMKALNVDGVIVNCWWGI---VEGWNPQKYAWSGYRELFNIIREFN-LKVQVVMA 328 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGi---VE~~~P~qYdWSgY~~Lf~mir~~G-LKlqvVMS 328 (454)
...++.|+.+|++.|.+.+==+- -+. -.....|.-+.+.++.++++| +++...+-
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~ 158 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKA-INRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHH-hcCCCCHHHHHHHHHHHHHhCCcceEEeEE
Confidence 35578899999987766542110 000 113346788999999999999 66655443
No 261
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.60 E-value=1.5e+02 Score=29.13 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=49.3
Q ss_pred HHHHHHHhcCcceEEEeeeee---eeec-CCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHH
Q 012883 274 QEISHMKALNVDGVIVNCWWG---IVEG-WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWG---iVE~-~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~ 349 (454)
..++.++..|++.|.+-+-=. +-+. ......++.-.+++++++++.|+++.+. +.|-+. .... =|.++.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~~~~~d-----~~~~-~~~~~~ 154 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD-AEHFFD-----GYKA-NPEYAL 154 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe-EEeccc-----cCCC-CHHHHH
Confidence 356677889999987633200 0010 0123446778899999999999998773 333222 1112 256665
Q ss_pred hhh----cCCCC-eEEecCCCCcc
Q 012883 350 EIG----KGNQD-IFFTDREGRRN 368 (454)
Q Consensus 350 e~g----~~npD-IfyTDrsG~Rn 368 (454)
+.. +.-.| |.+.|-.|.-.
T Consensus 155 ~~~~~~~~~g~~~i~l~DT~G~~~ 178 (273)
T cd07941 155 ATLKAAAEAGADWLVLCDTNGGTL 178 (273)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCC
Confidence 532 22233 56666666443
No 262
>PRK09936 hypothetical protein; Provisional
Probab=26.60 E-value=1.3e+02 Score=31.31 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
.+..-+.-|+++|.+|++-++|- |=+.-|..=+..=-| -..+++.+++.||||++=|-|
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQ-Wt~yG~~~fg~~~g~--La~~l~~A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQ-WTRYGDADFGGQRGW--LAKRLAAAQQAGLKLVVGLYA 94 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-eeeccCCCcccchHH--HHHHHHHHHHcCCEEEEcccC
Confidence 45777888999999999999885 322212111111112 467899999999999987764
No 263
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=26.35 E-value=91 Score=30.04 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHc
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~ 319 (454)
+++.+....+.++.+|+|+|++++.-=-+.....--.+..-..++++.+|+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~ 160 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA 160 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc
Confidence 5677888888888899999999985322111111123555666777777764
No 264
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=26.32 E-value=59 Score=32.92 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=41.9
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cc---hHHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AW---SGYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dW---SgY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|.-....+...++| ..|+-.|++|||=|- ...|-.| .+ =..+++.+.|++...+ .-+|||+
T Consensus 24 ~Ql~~~ss~e~y~~aL-~~GcRcvElD~Wdg~--~~eP~V~HG~Tlts~i~f~dv~~aI~~~AF~~S~yPvIlSl 95 (253)
T cd08632 24 DQLLSQSKVDMYARVL-QAGCRCVEVDCWDGP--DGEPVVHHGYTLTSKITFRDVIETINKYAFVKNEFPVILSI 95 (253)
T ss_pred CcccCcccHHHHHHHH-HcCCcEEEEEeecCC--CCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 5666666677777777 569999999999872 1112222 12 1368899999998876 4566664
No 265
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=26.18 E-value=62 Score=31.24 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=14.6
Q ss_pred HHHHHhcCcceEEEeeeee
Q 012883 276 ISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 276 L~aLK~~GVdGVmVDVWWG 294 (454)
+++..++|+|+|++||+=-
T Consensus 31 f~~A~~~Gad~vE~DV~lT 49 (282)
T cd08605 31 FIAASKFGADFVEFDVQVT 49 (282)
T ss_pred HHHHHHcCCCEEEEEEEEC
Confidence 3334457999999999975
No 266
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=26.13 E-value=2.7e+02 Score=30.48 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=40.3
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
-.+|+.+.++..++++|.+|..-.-..|.=+ +| .|+-.+|.++++.+.+.|.+.
T Consensus 126 d~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~-----sp-~~t~~y~~~~a~~l~~~Gad~ 179 (468)
T PRK12581 126 DALNDPRNIQQALRAVKKTGKEAQLCIAYTT-----SP-VHTLNYYLSLVKELVEMGADS 179 (468)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe-----CC-cCcHHHHHHHHHHHHHcCCCE
Confidence 3578899999999999999986543333322 34 788888999998888887654
No 267
>PRK08445 hypothetical protein; Provisional
Probab=26.12 E-value=1.1e+02 Score=31.46 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCcceE---EEeeeee-eeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 273 RQEISHMKALNVDGV---IVNCWWG-IVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 273 ~a~L~aLK~~GVdGV---mVDVWWG-iVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
+..|++||++|++-+ .+..-=- +-+.-.|++.....|.+..+.++++|+++-.-|=|-
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G 205 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFG 205 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEec
Confidence 679999999999954 3331000 001223667777778999999999999998877553
No 268
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.03 E-value=2.3e+02 Score=28.04 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHh--cCcceEEEee-eeeeeec----CCCccccc-----hHHHHHHHHHHHcCCceEEEE
Q 012883 268 DPELIRQEISHMKA--LNVDGVIVNC-WWGIVEG----WNPQKYAW-----SGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 268 ~~~al~a~L~aLK~--~GVdGVmVDV-WWGiVE~----~~P~qYdW-----SgY~~Lf~mir~~GLKlqvVM 327 (454)
+.+.+.+-++.+++ +-+|+|.+|+ |.+--+. .+=+.|.| -..+++++-+++.|+|+.+++
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 45666667777766 5579999998 5432110 11123444 456788888888899877665
No 269
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.98 E-value=75 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCcceEEEee
Q 012883 268 DPELIRQEISHMKALNVDGVIVNC 291 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDV 291 (454)
|.+.++..++.|.+.||+||.+.-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 889999999999999999998873
No 270
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=25.95 E-value=88 Score=33.40 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHH--HcCCceEEEEEeec
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR--EFNLKVQVVMAFHE 331 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir--~~GLKlqvVMSFHq 331 (454)
.+.|....+.++++|+.+||+|++|. -|+. |-.+.+ +.+|-|+.=-+||.
T Consensus 213 ~~em~~ra~~a~~~G~~~~m~~~~~~----------G~~a---l~~l~~~~~~~lpIhaHra~~g 264 (407)
T PRK09549 213 TFELKEKAKRAAEAGADALLFNVFAY----------GLDV---LQSLAEDPEIPVPIMAHPAVSG 264 (407)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecccc----------chHH---HHHHHhcCCCCcEEEecCCccc
Confidence 46799999999999999999999775 3444 444455 44565555455664
No 271
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.86 E-value=4.5e+02 Score=26.51 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=67.6
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcc--cccchHHHhh
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW--ISLPQWVMEI 351 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~--IPLP~WV~e~ 351 (454)
.-|+.|+.+|+. +|- .++...+... .....+-++.++++|+++..-.-+.. .++|+.. ..|=.|+.+.
T Consensus 188 ell~~L~~~g~~-----v~i-~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~---gvNd~~~~l~~l~~~l~~~ 257 (321)
T TIGR03822 188 ALIAALKTSGKT-----VYV-ALHANHAREL-TAEARAACARLIDAGIPMVSQSVLLR---GVNDDPETLAALMRAFVEC 257 (321)
T ss_pred HHHHHHHHcCCc-----EEE-EecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeC---CCCCCHHHHHHHHHHHHhc
Confidence 345677887742 222 2333345544 46788888899999988766554542 2556643 4566777765
Q ss_pred hcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhc
Q 012883 352 GKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (454)
Q Consensus 352 g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~ 407 (454)
|-...-++..|..+.. -+-+++++.+.++|+..+...+.|.-
T Consensus 258 gv~pyyl~~~~p~~g~--------------~~f~~~~~~~~~i~~~l~~~~~g~~~ 299 (321)
T TIGR03822 258 RIKPYYLHHLDLAPGT--------------AHFRVTIEEGQALVRALRGRISGLAQ 299 (321)
T ss_pred CCeeEEEEecCCCCCc--------------ccccCcHHHHHHHHHHHHHhCCCCcc
Confidence 4333234445555331 12247899999999999988887764
No 272
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=25.59 E-value=69 Score=30.91 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=33.9
Q ss_pred EEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeee
Q 012883 252 YVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 252 yVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWG 294 (454)
.+|+|+|--...+.....+.++.-++.....|+++|+++-+|.
T Consensus 18 ~~~~aiDh~~l~gp~~~~~~~~~~~~~a~~~~~~~v~~~p~~~ 60 (258)
T TIGR01949 18 TVIVPMDHGVSNGPIKGLVDIRKTVNEVAEGGADAVLLHKGIV 60 (258)
T ss_pred EEEEECCCccccCCCCCcCCHHHHHHHHHhcCCCEEEeCcchh
Confidence 8999999655444455667888889999999999999985554
No 273
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=25.43 E-value=86 Score=27.15 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEE
Q 012883 267 VDPELIRQEISHMKALNVDGVIV 289 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmV 289 (454)
.+.+.+..-+.+||.+|+.+|+|
T Consensus 71 v~~~~v~~~~~~Lk~~GA~~Ilv 93 (100)
T TIGR03455 71 VDEKVVNELIDKLKAAGARDILV 93 (100)
T ss_pred EcHHHHHHHHHHHHHcCCCeEEE
Confidence 34577788899999999999986
No 274
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=25.20 E-value=2e+02 Score=27.53 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=35.7
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeee-eeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVW-WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
..+.++..++. .++.-.+|.|++|+= +| --+..++++++++.+|+++.+
T Consensus 187 E~~~~~~~~~~---~i~~~~~d~v~~k~~~~G----------Gi~~~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 187 ESAFTPHDAFR---ELALGAADAVNIKTAKTG----------GLTKAQRVLAVAEALGLPVMV 236 (265)
T ss_pred CCCCCHHHHHH---HHHhCCCCEEEEeccccc----------CHHHHHHHHHHHHHcCCcEEe
Confidence 34566666554 456778999999964 45 234579999999999998765
No 275
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=25.08 E-value=1.9e+02 Score=26.86 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=31.9
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
+++.++++|+|||.++..= +.....+++++.++..|+.+.+.+
T Consensus 86 ~v~~~~~~Gad~v~l~~~~----------~~~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 86 QIYEARAAGADAVLLIVAA----------LDDEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred HHHHHHHcCCCEEEEeecc----------CCHHHHHHHHHHHHHcCCeEEEEE
Confidence 6889999999999987651 112557888888888888874333
No 276
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.04 E-value=1.5e+02 Score=27.64 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccc----hHHHHHHHHHHHcCCceE
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW----SGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdW----SgY~~Lf~mir~~GLKlq 324 (454)
+.++..+...+.+|+..|. ||.|-.....+..=.| ...++|.+++++.|+++.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~ 140 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLL 140 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 5677788889999999775 6777442211111123 457888888998886643
No 277
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=25.04 E-value=6.9e+02 Score=25.42 Aligned_cols=62 Identities=8% Similarity=0.119 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHHHh--cCcceEEEeeeeeeeecCCCccccc-----hHH--HHHHHHHHHcCCceEEEEEeec
Q 012883 266 LVDPELIRQEISHMKA--LNVDGVIVNCWWGIVEGWNPQKYAW-----SGY--RELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 266 l~~~~al~a~L~aLK~--~GVdGVmVDVWWGiVE~~~P~qYdW-----SgY--~~Lf~mir~~GLKlqvVMSFHq 331 (454)
..+.+.+..-++.+++ +-+|+|.+|+=|-- .-+.|.| ..- +++++.+++.|+|+.+++-=|-
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v 90 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAI 90 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCcc
Confidence 3566777777777776 45799999965531 1234443 344 8889999999999888775443
No 278
>PLN02784 alpha-amylase
Probab=24.86 E-value=1.5e+02 Score=34.89 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccc-------------hHHHHHHHHHHHcCCceEEEEEe-eccCC
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-------------SGYRELFNIIREFNLKVQVVMAF-HEYGA 334 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdW-------------SgY~~Lf~mir~~GLKlqvVMSF-HqCGG 334 (454)
++.|...|..|+.+||++|-+.- +.+..++..|+- ..+++|++.+++.|+|+.+=+-| |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP---~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPP---PTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCC---CCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 78999999999999999998765 234334444543 34788899999999998765554 76654
No 279
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=24.82 E-value=1.3e+02 Score=27.55 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc------cchHHHHHHHHHHHc
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY------AWSGYRELFNIIREF 319 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY------dWSgY~~Lf~mir~~ 319 (454)
.+++.+.+.-+.++++|+|||.+.+-.-..... -..| ++.-..++++.+++.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~-~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVT-KGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHh-CCCeeehhcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999998754221111 1122 555567777777653
No 280
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.77 E-value=2.7e+02 Score=31.39 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHh--cCcceEEEeeeeeeeecCCCccccch-----HHHHHHHHHHHcCCceEEEEEeeccCCCCCCCc
Q 012883 268 DPELIRQEISHMKA--LNVDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (454)
Q Consensus 268 ~~~al~a~L~aLK~--~GVdGVmVDVWWGiVE~~~P~qYdWS-----gY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~ 340 (454)
+.+.+..-++.+++ +-+|.|.+|+-|.--- .-..|.|. .-+++++-.++.|+|+.+++ +-+
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~--~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i--~P~-------- 348 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMKEF--QWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWI--NPY-------- 348 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhcCC--ceeeeEEChhhCCCHHHHHHHHHHCCCEEEEec--cCC--------
Confidence 35566666666665 4568999999885211 11245553 45788888899999876664 321
Q ss_pred ccccchHHHhhhcCCCCeEEecCCCCc
Q 012883 341 WISLPQWVMEIGKGNQDIFFTDREGRR 367 (454)
Q Consensus 341 ~IPLP~WV~e~g~~npDIfyTDrsG~R 367 (454)
|..-.-+.+++.+ .+.|.++.+|..
T Consensus 349 -i~~~s~~f~e~~~-~gy~vk~~~G~~ 373 (665)
T PRK10658 349 -IAQKSPLFKEGKE-KGYLLKRPDGSV 373 (665)
T ss_pred -cCCCchHHHHHHH-CCeEEECCCCCE
Confidence 1111233444444 367777777653
No 281
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=24.74 E-value=2.1e+02 Score=26.85 Aligned_cols=58 Identities=29% Similarity=0.460 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
.+.+.+++.+++||+. +|-|.|-+=||.-....|. ..-+++++.+-+.| +-+|+.=|.
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G--~D~IiG~H~ 216 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAG--ADLVIGHHP 216 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCC--CCEEEcCCC
Confidence 4568899999999988 9999999999964322222 23466777777777 456666664
No 282
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=24.74 E-value=65 Score=31.75 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHHhcCcceEEEeeeee
Q 012883 276 ISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 276 L~aLK~~GVdGVmVDVWWG 294 (454)
++...++|||+|++||+=-
T Consensus 47 f~~A~~~Gad~iE~DV~lT 65 (300)
T cd08612 47 FEHAVKVGTDMLELDVHLT 65 (300)
T ss_pred HHHHHHcCCCEEEEEeeEC
Confidence 3334567999999999965
No 283
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=24.57 E-value=83 Score=24.31 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHHcCCceEEEE
Q 012883 305 AWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 305 dWSgY~~Lf~mir~~GLKlqvVM 327 (454)
.|.||+.++++.++.|.+++.+-
T Consensus 3 ~p~G~~a~~~~L~~~g~~v~~~~ 25 (70)
T PF14258_consen 3 APNGTYALYQLLEEQGVKVERWR 25 (70)
T ss_pred CchHHHHHHHHHHHCCCeeEEec
Confidence 58999999999999999998764
No 284
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=24.55 E-value=64 Score=32.01 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=42.6
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEEe
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++++.-....+...++|+ .|+-.|++|||=|-- ..|-.| .+. ..+++++.|++.+.+ .-+|||+
T Consensus 23 g~Ql~~~Ss~~~y~~aL~-~GcRcvElD~wdg~~--~eP~v~HG~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILsl 95 (226)
T cd08558 23 GDQLTGESSVEAYIRALL-RGCRCVELDCWDGPD--GEPVVYHGHTLTSKILFKDVIEAIKEYAFVTSPYPVILSL 95 (226)
T ss_pred CCccCCccCHHHHHHHHH-hCCcEEEEEeecCCC--CCeEEeeCCCCccceEHHHHHHHHHHHhcccCCCCeEEEE
Confidence 355665566667777766 799999999998822 123332 222 368999999998765 3456664
No 285
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=24.50 E-value=1.2e+02 Score=30.17 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=36.5
Q ss_pred CCCCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcC-------------cceEEE
Q 012883 244 TGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALN-------------VDGVIV 289 (454)
Q Consensus 244 ~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~G-------------VdGVmV 289 (454)
..-+..+|++++|...-...+....++.|...|..|+..+ .-|||+
T Consensus 234 ~~~p~~Kv~iG~pa~~~aa~~gyv~~~~l~~~i~~l~~~~~~~~~~~~~~y~~~gGvm~ 292 (312)
T cd02871 234 PPLPADKVVIGLPASPSAAGGGYVSPSEVIKALDCLMKGTNCGSYYPAGGYPSLRGLMT 292 (312)
T ss_pred ccCChhhEEEeccCCCCccCCCccCHHHHHHHHHHHhcCCCCCcccCCCCCCCcceEEE
Confidence 3456788999999975444355778999999999999864 889997
No 286
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=24.46 E-value=1.7e+02 Score=30.04 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=33.9
Q ss_pred eeeeecCCCccccchHHHHHHHHHHHcCCceEEEEE
Q 012883 293 WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (454)
Q Consensus 293 WGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMS 328 (454)
|||+-+.-.+|..+.-.+.|-++++++|.|...++.
T Consensus 235 vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~ 270 (332)
T TIGR00322 235 FGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILL 270 (332)
T ss_pred EEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEe
Confidence 999999999999999999999999999999988875
No 287
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=24.44 E-value=2.6e+02 Score=25.78 Aligned_cols=50 Identities=14% Similarity=-0.001 Sum_probs=38.0
Q ss_pred HHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeecc
Q 012883 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEY 332 (454)
Q Consensus 276 L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqC 332 (454)
+.+||+.||+.|+|=+.-|. . |.=..|.+-.+-++++||++-+-.=+|.|
T Consensus 17 ~~~vk~~gi~fviiKateG~------~-~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~ 66 (191)
T cd06413 17 WARVRAQGVSFAYIKATEGG------D-HVDKRFAENWRGARAAGLPRGAYHFFTFC 66 (191)
T ss_pred HHHHHhCCCcEEEEEEcCCC------C-ccCHHHHHHHHHHHHcCCceEEEEEEecC
Confidence 67778999999999986542 2 33356777788899999998777666654
No 288
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=24.43 E-value=2.7e+02 Score=28.36 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCC--Ccccccc
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG--DAWISLP 345 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD--~~~IPLP 345 (454)
.++.+...|+.|++.|+.-+ +- .-+|-+ +|-..-.++++++++.|.+..-|+.||.+|.+-+. ..+.|=+
T Consensus 206 ~~~~vl~~L~~l~~~~~~~~-ir--~tlv~g-----~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~ 277 (322)
T PRK13762 206 AWERILETLELLPSKKTRTV-IR--ITLVKG-----YNMHDPEGFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSH 277 (322)
T ss_pred cHHHHHHHHHHHHhCCCCEE-EE--EEEECC-----cCccHHHHHHHHHHHcCCCEEEEECCeECCCccccccccCCcCH
Confidence 57788888999998875322 11 222332 23333338889999999999999999999976431 1223444
Q ss_pred hHHHh
Q 012883 346 QWVME 350 (454)
Q Consensus 346 ~WV~e 350 (454)
..+.+
T Consensus 278 eev~~ 282 (322)
T PRK13762 278 EEVRE 282 (322)
T ss_pred HHHHH
Confidence 45554
No 289
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=24.33 E-value=2.5e+02 Score=27.14 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=38.1
Q ss_pred CccccCHHHHHHHHHHHHhcCcceEEEeeeeeee-ecCCCccccchHHHHHHHHHHHcC
Q 012883 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIV-EGWNPQKYAWSGYRELFNIIREFN 320 (454)
Q Consensus 263 ~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiV-E~~~P~qYdWSgY~~Lf~mir~~G 320 (454)
+++ .|.+++++.++.|.+.||+||.+- |-+ | -....+..+++|++.+.++-
T Consensus 15 dg~-iD~~~~~~~i~~l~~~Gv~gl~v~---GstGE---~~~lt~~Er~~l~~~~~~~~ 66 (284)
T cd00950 15 DGS-VDFDALERLIEFQIENGTDGLVVC---GTTGE---SPTLSDEEHEAVIEAVVEAV 66 (284)
T ss_pred CCC-cCHHHHHHHHHHHHHcCCCEEEEC---CCCcc---hhhCCHHHHHHHHHHHHHHh
Confidence 444 589999999999999999999764 432 2 23556777888887777663
No 290
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=24.29 E-value=1.6e+02 Score=30.12 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHH
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR 317 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir 317 (454)
+-+++-++.||..|.|||.+|..+-.-. ++. +-..|.+|++-++
T Consensus 99 ~fi~siv~~~~~~gfDGIdIDwE~p~~~--~~~--d~~~~t~llkelr 142 (358)
T cd02875 99 QWIQQKVELAKSQFMDGINIDIEQPITK--GSP--EYYALTELVKETT 142 (358)
T ss_pred HHHHHHHHHHHHhCCCeEEEcccCCCCC--Ccc--hHHHHHHHHHHHH
Confidence 3557777888999999999998775322 111 2335555555444
No 291
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=24.27 E-value=2e+02 Score=30.79 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeecC----CCccccchHHHHHHHHHHHcCCceEEEEEeec
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGIVEGW----NPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGiVE~~----~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHq 331 (454)
-+..|..||+.||.-|-+-||=-=-... +.+.-|-..-.+++.-+++.||| |.+-||-
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmK--Vl~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMK--VLLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcE--EEeeccc
Confidence 3556889999999999999995322111 11222322223344444455655 7889994
No 292
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.23 E-value=3.5e+02 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
..+.+.+.|++|+++|+..|.+.+ ++-+ ..|-....++++.+++.|++++.+ -|.-.|
T Consensus 137 ~~~~vl~~i~~l~~~G~~~v~in~---vv~~----g~n~~ei~~l~~~~~~~gv~~~~i-e~mp~~ 194 (334)
T TIGR02666 137 RLEQVLAGIDAALAAGLEPVKLNT---VVMR----GVNDDEIVDLAEFAKERGVTLRFI-ELMPLG 194 (334)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEE---EEeC----CCCHHHHHHHHHHHHhcCCeEEEE-eccCCC
Confidence 457777888888888887555554 2221 124456778888888888876543 344333
No 293
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=24.15 E-value=3.8e+02 Score=30.90 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=68.0
Q ss_pred EEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE-EEee
Q 012883 252 YVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV-MAFH 330 (454)
Q Consensus 252 yVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV-MSFH 330 (454)
.|.|||- |--.|.-.|..|-.+||+-|+|=|-|= =.++.+-+++.......- +--|
T Consensus 47 ~~LLPla---------NVpmIdYtL~~L~~agV~eVfvfc~~~--------------~~qi~e~i~~sew~~~~~~~v~t 103 (673)
T KOG1461|consen 47 RVLLPLA---------NVPMIDYTLEWLERAGVEEVFVFCSAH--------------AAQIIEYIEKSEWYLPMSFIVVT 103 (673)
T ss_pred ceEeeec---------CchHHHHHHHHHHhcCceEEEEEeccc--------------HHHHHHHHhhccccccccceEEE
Confidence 5588983 347899999999999999999988764 234555555533333332 3344
Q ss_pred ccCC---CCCC----------------------CcccccchHHHhh---hcCCCC----eEEecCCCCccCceeeeecCc
Q 012883 331 EYGA---NDSG----------------------DAWISLPQWVMEI---GKGNQD----IFFTDREGRRNTECLSWGVDK 378 (454)
Q Consensus 331 qCGG---NVGD----------------------~~~IPLP~WV~e~---g~~npD----IfyTDrsG~Rn~EcLSlgvD~ 378 (454)
-|+| .+|| -.|+||-.=+.+. -+.|++ ++|+-.+-+.+.|=+.+++|.
T Consensus 104 i~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd~ 183 (673)
T KOG1461|consen 104 ICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDS 183 (673)
T ss_pred EcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEcC
Confidence 4554 3555 2568887777664 244555 677777655556777777774
No 294
>cd08041 OBF_kDNA_ligase_like The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. The mitochondrial DNA of parasitic protozoan is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-de
Probab=24.13 E-value=53 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.1
Q ss_pred cceeEEEe-cccCcccccCCCCC
Q 012883 409 GLICAVEI-GLGPSGELKYPSLS 430 (454)
Q Consensus 409 g~I~eI~V-GLGPaGELRYPSYp 430 (454)
+.|.+|+- ++.+.|.||.|||-
T Consensus 52 g~v~~V~y~e~t~~g~lR~P~f~ 74 (77)
T cd08041 52 GSIITYKYQGLTKNGLPRFPVFL 74 (77)
T ss_pred CCEEEEEEEecCCCCcccCCEEE
Confidence 35788864 78999999999984
No 295
>PLN02564 6-phosphofructokinase
Probab=24.03 E-value=3.3e+02 Score=29.95 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHh
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e 350 (454)
....-+..|+..|++++.+= .|++- ..+=..|.+.+++.|+++.+|- +|+=+
T Consensus 164 ~~~~iv~~L~~~~Id~LivI--------GGDGS--~~gA~~L~e~~~~~g~~i~VIG----------------IPKTI-- 215 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYII--------GGDGT--QKGASVIYEEIRRRGLKVAVAG----------------IPKTI-- 215 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEE--------CCchH--HHHHHHHHHHHHHcCCCceEEE----------------ecccc--
Confidence 34566888999999998652 24443 3467788999999999987762 55543
Q ss_pred hhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecccCcc
Q 012883 351 IGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSG 422 (454)
Q Consensus 351 ~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGLGPaG 422 (454)
|.||.+||. |||.| |+++...+-....+++-...-. -|-=|+|=..=||
T Consensus 216 ----DNDI~~tD~---------T~GFd--------TAv~~~~~aI~~i~~tA~S~~~--rv~iVEvMGR~aG 264 (484)
T PLN02564 216 ----DNDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESVEN--GIGLVKLMGRYSG 264 (484)
T ss_pred ----cCCCcCccc---------CCCHH--------HHHHHHHHHHHHHHHHHHhcCC--CEEEEEECCCCHH
Confidence 458999884 67766 4788888888888888766542 2434444333344
No 296
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.97 E-value=2.4e+02 Score=24.38 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=40.2
Q ss_pred cccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 265 ~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
.+.|++.+.+.|+ |+|.|-.=+ ++..-+-..++.+++.++++|.|-.++||...+.
T Consensus 47 d~~d~~~~~~al~-----~~d~vi~~~--------~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 47 DLFDPDSVKAALK-----GADAVIHAA--------GPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVY 102 (183)
T ss_dssp CTTCHHHHHHHHT-----TSSEEEECC--------HSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGT
T ss_pred eehhhhhhhhhhh-----hcchhhhhh--------hhhcccccccccccccccccccccceeeeccccC
Confidence 3567777766555 888775544 2222258889999999999999988888877544
No 297
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=23.88 E-value=4.5e+02 Score=26.28 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=54.1
Q ss_pred CccEEEEeecceecCC-----ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCc
Q 012883 248 YIPVYVMLANHVINNF-----CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLK 322 (454)
Q Consensus 248 ~VpVyVMLPLdvV~~~-----~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLK 322 (454)
++.+.|-+.+.+.++. +.-.+.+.+...++.+|.+|+. |.+++=-|+ |++ ......+.++++.+.+..
T Consensus 136 G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~-v~~~lI~Gl-----Pge-t~e~~~~t~~~l~~l~~d 208 (302)
T TIGR01212 136 GYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIK-VCSHVILGL-----PGE-DREEMMETAKIVSLLDVD 208 (302)
T ss_pred CceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCE-EEEeEEECC-----CCC-CHHHHHHHHHHHHhcCCC
Confidence 3334566666666532 3334678889999999999986 777877774 333 446778888888888888
Q ss_pred eEEEEEeec
Q 012883 323 VQVVMAFHE 331 (454)
Q Consensus 323 lqvVMSFHq 331 (454)
...+..+|-
T Consensus 209 ~i~i~~l~~ 217 (302)
T TIGR01212 209 GIKIHPLHV 217 (302)
T ss_pred EEEEEEEEe
Confidence 777777763
No 298
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=23.88 E-value=63 Score=32.61 Aligned_cols=66 Identities=17% Similarity=0.349 Sum_probs=43.0
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEEe--ecc
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMAF--HEY 332 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMSF--HqC 332 (454)
++|.-....+...++|+ .|+-.|++|||=|-- ..|-.| .+. ..+++++.|++...+ .-+|||+ |.|
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~Wdg~~--~eP~V~HG~t~ts~i~f~dv~~~I~~~AF~~s~yPvIlslE~Hcs 100 (254)
T cd08628 24 DQLRSESSTEAYIRCLR-MGCRCIELDCWDGPD--GKPIIYHGWTRTTKIKFDDVVQAIKDHAFVTSEYPVILSIEEHCS 100 (254)
T ss_pred CeeecCCCHHHHHHHHH-cCCcEEEEEeecCCC--CCeEEeeCCCccCCcCHHHHHHHHHHHhccCCCCCEEEEEeccCC
Confidence 44544455666677775 799999999998721 123322 222 368899999998775 5666664 644
No 299
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=23.73 E-value=75 Score=29.36 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=15.5
Q ss_pred HHHHHHhcCcceEEEeeeee
Q 012883 275 EISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWG 294 (454)
.+++...+|+|+|++||+--
T Consensus 18 af~~A~~~Gad~vE~DV~~T 37 (220)
T cd08579 18 ALEAAIKAKPDYVEIDVQET 37 (220)
T ss_pred HHHHHHHcCCCEEEEEeeEc
Confidence 44444557999999999984
No 300
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.66 E-value=2.1e+02 Score=28.13 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=78.7
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHhh--
Q 012883 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEI-- 351 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~-- 351 (454)
..|+..+..||+.|.+-+ ...++...+++++.+|+.|+++.+-+..- .+ .+ |..+.+.
T Consensus 86 ~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a-~~--------~~-~~~~~~~~~ 145 (266)
T cd07944 86 DLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMAI-SG--------YS-DEELLELLE 145 (266)
T ss_pred HHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEee-cC--------CC-HHHHHHHHH
Confidence 356677889999988754 12378889999999999999887765531 11 12 4555543
Q ss_pred --hcCCCC-eEEecCCCCccCceeeee-------cCc-ccccCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecccC
Q 012883 352 --GKGNQD-IFFTDREGRRNTECLSWG-------VDK-ERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGP 420 (454)
Q Consensus 352 --g~~npD-IfyTDrsG~Rn~EcLSlg-------vD~-~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGLGP 420 (454)
.+.-+| |.+.|-.|.-++|-+.-- +++ +|+ -+.+-.|+--++.....-+-. | +.-|..++++
T Consensus 146 ~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i-----~~H~Hn~~Gla~AN~laA~~a-G-a~~vd~s~~G 218 (266)
T cd07944 146 LVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKL-----GFHAHNNLQLALANTLEAIEL-G-VEIIDATVYG 218 (266)
T ss_pred HHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceE-----EEEeCCCccHHHHHHHHHHHc-C-CCEEEEeccc
Confidence 233455 788899987776655311 111 222 234555666666666666543 3 5678888888
Q ss_pred ccc
Q 012883 421 SGE 423 (454)
Q Consensus 421 aGE 423 (454)
-||
T Consensus 219 ~G~ 221 (266)
T cd07944 219 MGR 221 (266)
T ss_pred CCC
Confidence 887
No 301
>PLN02228 Phosphoinositide phospholipase C
Probab=23.65 E-value=1.5e+02 Score=33.12 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=43.8
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcc---ccch---HHHHHHHHHHHcCCc---eEEEEE--eecc
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWS---GYRELFNIIREFNLK---VQVVMA--FHEY 332 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~q---YdWS---gY~~Lf~mir~~GLK---lqvVMS--FHqC 332 (454)
++|.....++...++|+. |+-.|++|||=|-- ++.|-. |.+. ..+++.+.|++...+ .-+||| -|.|
T Consensus 128 ~Ql~~~ss~e~y~~aL~~-GcRcvElD~wdg~~-~~~p~v~Hg~t~ts~i~f~~v~~~I~~~AF~~s~yPvIlslE~hc~ 205 (567)
T PLN02228 128 NQVNSRSSVEPIVQALRK-GVKVIELDLWPNPS-GNAAEVRHGRTLTSHEDLQKCLNAIKDNAFQVSDYPVVITLEDHLP 205 (567)
T ss_pred CcccCccCHHHHHHHHHc-CCcEEEEEeccCCC-CCCCEEEeCCcccCceEHHHHHHHHHHhhccCCCCCEEEEeecCCC
Confidence 566666777888888884 99999999997621 111211 2222 267888999998875 345555 5644
No 302
>PF05908 DUF867: Protein of unknown function (DUF867); InterPro: IPR008585 This family consists of a number of bacterial and phage proteins with no known function and which are found in Bacillus species and the Lambda-like viruses.; PDB: 3A9L_A.
Probab=23.43 E-value=67 Score=31.19 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCceEEEEEeeccCCC
Q 012883 309 YRELFNIIREFNLKVQVVMAFHEYGAN 335 (454)
Q Consensus 309 Y~~Lf~mir~~GLKlqvVMSFHqCGGN 335 (454)
+-.+.+|+++ ...++|||.|+|+
T Consensus 81 eP~a~~l~~~----~~~~vsiHG~~~~ 103 (194)
T PF05908_consen 81 EPRALELVKK----SDYVVSIHGYKGD 103 (194)
T ss_dssp -HHHHHHHHT-----SEEEEEEEE--S
T ss_pred cHHHHHHHhc----CCEEEEEECCCCC
Confidence 6788999994 5899999999976
No 303
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=23.35 E-value=1.9e+02 Score=27.55 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=40.5
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
+.+.+.....|+.++.+||..| |-+|.. +. .-+| ..+.+++++.|+.+.+.+.+|.+-
T Consensus 28 ~~~~~~~~~~~~~~~~~Gvtti---v~~~~~---~~-~~~~---~~~~~~~~~~g~~v~~~~G~hp~~ 85 (293)
T cd00530 28 LADVEAAKEELKRFRAHGGRTI---VDATPP---GI-GRDV---EKLAEVARATGVNIVAATGFYKDA 85 (293)
T ss_pred hhhHHHHHHHHHHHHHcCCCeE---EEcCCc---cc-CcCH---HHHHHHHHHhCCcEEEecccCCCc
Confidence 4566788889999999999888 233311 00 1134 566777888999988888888654
No 304
>PRK10426 alpha-glucosidase; Provisional
Probab=23.34 E-value=3.6e+02 Score=30.20 Aligned_cols=86 Identities=15% Similarity=0.295 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcC--cceEEEeeeeeeeec-CCCc---cccc-----hHHHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 012883 269 PELIRQEISHMKALN--VDGVIVNCWWGIVEG-WNPQ---KYAW-----SGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (454)
Q Consensus 269 ~~al~a~L~aLK~~G--VdGVmVDVWWGiVE~-~~P~---qYdW-----SgY~~Lf~mir~~GLKlqvVMSFHqCGGNVG 337 (454)
.+.+..-++.+++.| +|+|.+|-|-|.-.. .+.+ .|.| -.-+++++-.++.|+|+.+++-=|-+-
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~---- 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS---- 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC----
Confidence 467888888888876 799989987664332 1111 1233 344688888888898877776444322
Q ss_pred CCcccccchHHHhhhcCCCCeEEecCCCC
Q 012883 338 GDAWISLPQWVMEIGKGNQDIFFTDREGR 366 (454)
Q Consensus 338 D~~~IPLP~WV~e~g~~npDIfyTDrsG~ 366 (454)
+ .-+.+++.+ -+.|.+|.+|.
T Consensus 296 -~------~~~y~e~~~-~gy~vk~~~g~ 316 (635)
T PRK10426 296 -D------GDLCEEAAE-KGYLAKDADGG 316 (635)
T ss_pred -C------CHHHHHHHH-CCcEEECCCCC
Confidence 1 122344433 36788877765
No 305
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.30 E-value=1.1e+02 Score=30.74 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=37.4
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEee-eeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCC
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDV-WWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVG 337 (454)
+.++..+..- ++.-.+|.|.+|+ |.| -.+..++++++++++|+++. .|.+++.+|
T Consensus 236 ~~~~~~~~~~---~~~~~~d~v~~d~~~~G----------Git~~~~~~~lA~~~gi~~~----~h~~~s~i~ 291 (352)
T cd03325 236 LFSRWDFKEL---LEDGAVDIIQPDISHAG----------GITELKKIAAMAEAYDVALA----PHCPLGPIA 291 (352)
T ss_pred ccCHHHHHHH---HHhCCCCEEecCccccC----------CHHHHHHHHHHHHHcCCcEe----ccCCCChHH
Confidence 4455555444 4556799999997 444 24558999999999999964 475444443
No 306
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=23.29 E-value=65 Score=28.03 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCcceEEEe
Q 012883 273 RQEISHMKALNVDGVIVN 290 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVD 290 (454)
...++.+..+|||||+.|
T Consensus 171 ~~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 171 PEDARRLLALGVDGIITD 188 (189)
T ss_pred HHHHHHHHHCCCCEEecC
Confidence 446677788999999987
No 307
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.29 E-value=75 Score=30.11 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=15.0
Q ss_pred HHHHHHhcCcceEEEeeeee
Q 012883 275 EISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWG 294 (454)
.+++...+|+|+|++|||=-
T Consensus 20 af~~A~~~G~d~vE~DV~lT 39 (256)
T cd08601 20 AYDLAREMGADYIELDLQMT 39 (256)
T ss_pred HHHHHHHcCCCEEEEEeeEC
Confidence 34444557999999999974
No 308
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=23.26 E-value=1.6e+02 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeee
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWG 294 (454)
...+....+.++++|+++|||++++.
T Consensus 204 ~~em~~ra~~a~~~Ga~~vMv~~~~~ 229 (364)
T cd08210 204 PTQLLERARFAKEAGAGGVLIAPGLT 229 (364)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecccc
Confidence 45788888889999999999998764
No 309
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.10 E-value=1.8e+02 Score=28.59 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=47.9
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCC-----CCCCcccccchHHH
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN-----DSGDAWISLPQWVM 349 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGN-----VGD~~~IPLP~WV~ 349 (454)
.|++=-.+|++-+.+-. -||-..|.++.+.+++.|+++.++..+--|..- .-.-|-|.+|.|+.
T Consensus 149 ~L~~K~~aGA~f~iTQ~-----------~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~ 217 (272)
T TIGR00676 149 NLKRKVDAGADYAITQL-----------FFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLV 217 (272)
T ss_pred HHHHHHHcCCCeEeecc-----------ccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHH
Confidence 34442358998766433 678899999999999999998887776655411 01135689999999
Q ss_pred hhhc
Q 012883 350 EIGK 353 (454)
Q Consensus 350 e~g~ 353 (454)
+..+
T Consensus 218 ~~l~ 221 (272)
T TIGR00676 218 KRLE 221 (272)
T ss_pred HHHH
Confidence 8644
No 310
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.05 E-value=77 Score=30.43 Aligned_cols=15 Identities=27% Similarity=0.497 Sum_probs=12.5
Q ss_pred HhcCcceEEEeeeee
Q 012883 280 KALNVDGVIVNCWWG 294 (454)
Q Consensus 280 K~~GVdGVmVDVWWG 294 (454)
.++|+|+|++||+=-
T Consensus 30 ~~~Gad~iE~DV~lT 44 (265)
T cd08564 30 LEIGVDGVELDVFLT 44 (265)
T ss_pred HHcCCCEEEEeeEEC
Confidence 457999999999953
No 311
>PF03799 FtsQ: Cell division protein FtsQ; InterPro: IPR005548 FtsQ is one of several cell division proteins. FtsQ interacts with other Fts proteins, reviewed in []. The precise function of FtsQ is unknown.; PDB: 2VH1_B 2VH2_B 2ALJ_A 1YR1_A.
Probab=23.03 E-value=1.8e+02 Score=23.50 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=37.9
Q ss_pred CeEEecCCCCccCceeeeecCcccccCCCchhHh-hHHHHHHHHHHHhhhhcccceeEEEec
Q 012883 357 DIFFTDREGRRNTECLSWGVDKERVLNGRTGIEV-YFDFMRSFRTEFDDLFVAGLICAVEIG 417 (454)
Q Consensus 357 DIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~-Y~DFMrSFr~~F~d~l~~g~I~eI~VG 417 (454)
..++.|++|..-..-.. ..+.+|++.|-+.-+. -.++++.|..-...+.. .|++|.+.
T Consensus 9 ~~~lvd~~G~v~~~~~~-~~~~lP~i~g~~~~~~~~~~~~~~l~~~~~~~~~--~i~~i~~~ 67 (117)
T PF03799_consen 9 GYYLVDENGVVFEPEPE-PPPDLPLITGPEDSEKDLLELLRELAALPPPLRS--QISEISYD 67 (117)
T ss_dssp EEEEEETTS-EECCCCT-TTTTS-EEESSTTHHHHHHHHHHHHHHHHHHTTH--S-SEEEEE
T ss_pred ceEEECCCCeEEecCCC-CCCCCeEEECCCCchHHHHHHHHHHHHHHHHHhc--eeeEEEEC
Confidence 47889999988666222 4568999999875433 56777777766666654 58888753
No 312
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=22.99 E-value=76 Score=34.85 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=36.0
Q ss_pred cchHHHH---HHHHHHHcCCceEEEEEeeccCCCCCCCcccccch-HHHhhhcCCCC-eEEecCC
Q 012883 305 AWSGYRE---LFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ-WVMEIGKGNQD-IFFTDRE 364 (454)
Q Consensus 305 dWSgY~~---Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~-WV~e~g~~npD-IfyTDrs 364 (454)
+|+-|+. |.++++++|+++.+ ||.+||.||-- -+|. .+..+-..-|. +-+|-|+
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i~~---fhGrGg~~~RG---Ggpp~~~~ail~q~~g~~r~TeQg 274 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEIYP---ILGVGSLPFRG---HLSPENLENVLEEYPGVYTFTVQS 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---eccCCCCCCCC---CCChHHHHHHHhCCCCCeEEEecc
Confidence 6887765 66778899999876 79999999876 3542 22222233344 6777666
No 313
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.97 E-value=2.6e+02 Score=27.14 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeee
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWW 293 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWW 293 (454)
.+.+.+....+.++.+|+|+|++.+..
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~c 125 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISC 125 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356788888888899999999998764
No 314
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=22.90 E-value=82 Score=28.47 Aligned_cols=58 Identities=9% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHHhcCcceEEEeeeee----eeecCCCc------cccchHHHHHHHHHHHc----CCceEEEEEeeccC
Q 012883 276 ISHMKALNVDGVIVNCWWG----IVEGWNPQ------KYAWSGYRELFNIIREF----NLKVQVVMAFHEYG 333 (454)
Q Consensus 276 L~aLK~~GVdGVmVDVWWG----iVE~~~P~------qYdWSgY~~Lf~mir~~----GLKlqvVMSFHqCG 333 (454)
++..-..|+++|++|||=. +|=-+.+. ..-.-.+.++++.+++. |-++...+-.+.++
T Consensus 19 f~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~ 90 (179)
T cd08555 19 FYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTAGILPPTLEEVLELIADYLKNPDYTIILSLEIKQDS 90 (179)
T ss_pred HHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccCCCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCC
Confidence 3333468999999999976 22111111 11344566777777663 23455555566443
No 315
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=22.85 E-value=2.5e+02 Score=28.14 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=50.6
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccc------hHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccc---
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAW------SGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP--- 345 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdW------SgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP--- 345 (454)
.++....+||+.|.+-+ .+-|...-.++++ .-++++.+++++.||++++.+ .|...-++.
T Consensus 79 die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~~v 147 (279)
T cd07947 79 DLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYGFV 147 (279)
T ss_pred HHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCcccch
Confidence 34445567999887743 4444433334443 457888888999999987766 233333333
Q ss_pred -hHHHhhhc----CCCC--eEEecCCCCccC
Q 012883 346 -QWVMEIGK----GNQD--IFFTDREGRRNT 369 (454)
Q Consensus 346 -~WV~e~g~----~npD--IfyTDrsG~Rn~ 369 (454)
.|+.+..+ .-.| |-+.|--|.-++
T Consensus 148 ~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P 178 (279)
T cd07947 148 LPFVNKLMKLSKESGIPVKIRLCDTLGYGVP 178 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcCCc
Confidence 57777543 3344 446676665544
No 316
>PLN02952 phosphoinositide phospholipase C
Probab=22.84 E-value=1.6e+02 Score=33.15 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=40.2
Q ss_pred ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccc---cch---HHHHHHHHHHHcCCc---eEEEEEe
Q 012883 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK---VQVVMAF 329 (454)
Q Consensus 264 ~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY---dWS---gY~~Lf~mir~~GLK---lqvVMSF 329 (454)
++|.-....+...++|+ .|+-.|++|||=|--. ..|-.| .+. ..+++++.|++...+ .-+|||+
T Consensus 145 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~~-~~p~v~Hg~t~ts~i~f~~v~~~I~~~aF~~s~yPvIlsl 217 (599)
T PLN02952 145 NQLSSDCSEVPIVKALQ-RGVRVIELDLWPGSTK-DEILVLHGRTLTTPVPLIKCLKSIRDYAFSSSPYPVIITL 217 (599)
T ss_pred CccCCcCCHHHHHHHHH-cCCcEEEEEeecCCCC-CCCEEEeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 45655555565555554 5999999999977311 112222 222 367899999998865 4566663
No 317
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=22.71 E-value=2e+02 Score=28.92 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=39.2
Q ss_pred ccCHHHHHHHHHHHHh--cCcceEEEeeeeeeeecCCCccccch-----HHHHHHHHHHHcCCceEEEEE
Q 012883 266 LVDPELIRQEISHMKA--LNVDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMA 328 (454)
Q Consensus 266 l~~~~al~a~L~aLK~--~GVdGVmVDVWWGiVE~~~P~qYdWS-----gY~~Lf~mir~~GLKlqvVMS 328 (454)
-.+.+.+..-++.+++ +-+|.|.+|+=|- .+.+.|+|. --+++++-+++.|+|+.+++-
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEec
Confidence 3456667777777776 4578999998332 134456554 356788888889998766653
No 318
>PRK05926 hypothetical protein; Provisional
Probab=22.70 E-value=97 Score=32.21 Aligned_cols=55 Identities=15% Similarity=0.320 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCcceEEEeeeeee-------eecCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 272 IRQEISHMKALNVDGVIVNCWWGI-------VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 272 l~a~L~aLK~~GVdGVmVDVWWGi-------VE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
.+..|++||++|++-+-.- |. -+.-.|++..+..+.+..++++++|+++-.-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~---GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGG---GAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCC---CchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 4677999999999875422 22 1223467777888899999999999999877766
No 319
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=22.67 E-value=1.1e+02 Score=31.07 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=27.1
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeee
Q 012883 266 LVDPELIRQEISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 266 l~~~~al~a~L~aLK~~GVdGVmVDVWWG 294 (454)
+.+++.++.|..-.|++||||...+-.|-
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf 82 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHYWF 82 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeeec
Confidence 68999999999999999999999998776
No 320
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.67 E-value=82 Score=29.52 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHhcCcceEEEeeeee
Q 012883 274 QEISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 274 a~L~aLK~~GVdGVmVDVWWG 294 (454)
..+++...+|+|+|++||+--
T Consensus 19 ~Af~~A~~~Gad~vE~DV~~T 39 (263)
T cd08567 19 PAFAKALDLGVDTLELDLVLT 39 (263)
T ss_pred HHHHHHHHcCCCEEEEEEEEc
Confidence 444555678999999999976
No 321
>PRK08445 hypothetical protein; Provisional
Probab=22.52 E-value=2.6e+02 Score=28.67 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 268 ~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
.++.+...++.++..|+..|.+ + ...+-.++..+|.++++.|++..-.++.
T Consensus 74 ~~eeI~~~~~~a~~~g~~~i~~------~-gg~~~~~~~e~~~~l~~~Ik~~~p~i~~ 124 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGTQILF------Q-GGVHPKLKIEWYENLVSHIAQKYPTITI 124 (348)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE------e-cCCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 5688899999999999987633 2 1234467888999999999998755554
No 322
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=22.49 E-value=3.3e+02 Score=28.63 Aligned_cols=59 Identities=12% Similarity=0.387 Sum_probs=46.8
Q ss_pred cccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 265 ~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
...+.+.+...++.+|++|++.|.+|+=.|+ |++ +-....+.++.+.+.|.+-..+.++
T Consensus 183 R~~~~~~~~~ai~~lr~~G~~~v~~dli~Gl-----Pgq-t~e~~~~tl~~~~~l~p~~i~~y~l 241 (453)
T PRK13347 183 RIQPEEMVARAVELLRAAGFESINFDLIYGL-----PHQ-TVESFRETLDKVIALSPDRIAVFGY 241 (453)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeC-----CCC-CHHHHHHHHHHHHhcCCCEEEEecc
Confidence 3456788889999999999999999998885 333 5666788888888888876666654
No 323
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.44 E-value=1.8e+02 Score=29.86 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCccc----------cchHHHHHHHHHHHcCCc
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKY----------AWSGYRELFNIIREFNLK 322 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qY----------dWSgY~~Lf~mir~~GLK 322 (454)
..+++.||++||+++.+-+ |.-.+..| +|..-.+-+++++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3566999999999998843 43222222 344456788999999997
No 324
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.35 E-value=3e+02 Score=26.75 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=41.1
Q ss_pred cCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHH-cCCceEEEE
Q 012883 261 NNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE-FNLKVQVVM 327 (454)
Q Consensus 261 ~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~-~GLKlqvVM 327 (454)
+.++.+ |.++++..++.|-..||+||++---=| | -.....+-+++|++.+.+ .+=|+.++.
T Consensus 14 ~~dg~i-d~~~~~~~i~~l~~~Gv~gl~~~GstG--E---~~~Lt~~Er~~l~~~~~~~~~~~~~vi~ 75 (289)
T PF00701_consen 14 NADGSI-DEDALKRLIDFLIEAGVDGLVVLGSTG--E---FYSLTDEERKELLEIVVEAAAGRVPVIA 75 (289)
T ss_dssp ETTSSB--HHHHHHHHHHHHHTTSSEEEESSTTT--T---GGGS-HHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCcCc-CHHHHHHHHHHHHHcCCCEEEECCCCc--c---cccCCHHHHHHHHHHHHHHccCceEEEe
Confidence 345554 899999999999999999998754222 1 234567778899988766 334555444
No 325
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=22.35 E-value=68 Score=30.97 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.2
Q ss_pred HHHHHHhcCcceEEEeee
Q 012883 275 EISHMKALNVDGVIVNCW 292 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVW 292 (454)
.+++|..+|||||++|-+
T Consensus 273 ~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 273 NRKKLKELGVDGLIYDRI 290 (290)
T ss_pred HHHHHHHcCCCEEEecCC
Confidence 345678889999999954
No 326
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=22.22 E-value=98 Score=36.69 Aligned_cols=58 Identities=29% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCCCccchhH-HHHhHH-HHHhhhhHHHHHHhhh--------------------hhcCCCCCC----------cccChhH
Q 012883 64 GKGKKEREKE-KERTKL-RERHRRAITSRMLAGL--------------------RQYGNFPLP----------ARADMND 111 (454)
Q Consensus 64 ~~~~~~r~~e-rE~~k~-RER~Rraia~ki~aGl--------------------r~~g~~~lp----------~~~d~n~ 111 (454)
+.....|||| |||++| ||-|-|.+--||-.|+ ++||...|| -|--.|-
T Consensus 713 ~~~~~~rErelrERE~Rere~reReLrdRlK~gfe~kp~~~~~lh~~~~~~e~~~r~~~~~lp~~~gph~f~~~~pgl~~ 792 (982)
T PF03154_consen 713 SADPAARERELREREIRERELRERELRDRLKPGFEVKPPELEPLHPVPNPLEHFRRHGALGLPPPPGPHPFAPFHPGLNP 792 (982)
T ss_pred ccCHHhhhhhhhhhhhhhHHHHHHHHHHhhccccccCCCCCCCCCCCCccchhhhcccccCCCCCCCCCccccCCCCCCh
Q ss_pred HHHHHHHHhC
Q 012883 112 VLAALAREAG 121 (454)
Q Consensus 112 vl~al~~eag 121 (454)
+-|....-||
T Consensus 793 lererla~ag 802 (982)
T PF03154_consen 793 LERERLALAG 802 (982)
T ss_pred HHHHHHhhcC
No 327
>PLN03231 putative alpha-galactosidase; Provisional
Probab=22.20 E-value=85 Score=32.97 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHhcCcceEEEeeeeeeeec----------------CCCccc-----cch------HHHHHHHHHHHcCCceEE
Q 012883 277 SHMKALNVDGVIVNCWWGIVEG----------------WNPQKY-----AWS------GYRELFNIIREFNLKVQV 325 (454)
Q Consensus 277 ~aLK~~GVdGVmVDVWWGiVE~----------------~~P~qY-----dWS------gY~~Lf~mir~~GLKlqv 325 (454)
+.||.+|-+-|.||.=|-.-++ ..-++. -|- |.+.|++.|.+.|||+=.
T Consensus 29 ~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKfGI 104 (357)
T PLN03231 29 ETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKLGI 104 (357)
T ss_pred cchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcceEE
Confidence 4789999999999855532111 111111 222 899999999999999754
No 328
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=22.09 E-value=2.7e+02 Score=20.66 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=29.4
Q ss_pred HHHhHHHHHhhhhHHHHHHhhhhhcCCCC---CCcccChhHHHHHHH
Q 012883 74 KERTKLRERHRRAITSRMLAGLRQYGNFP---LPARADMNDVLAALA 117 (454)
Q Consensus 74 rE~~k~RER~Rraia~ki~aGlr~~g~~~---lp~~~d~n~vl~al~ 117 (454)
|+....+||+||.=-..-|.-|+..=... -..+.+.-+||..-+
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai 48 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAI 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHH
Confidence 56677888888877777777787764443 234567777776544
No 329
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=21.79 E-value=1.2e+02 Score=24.70 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=25.1
Q ss_pred eeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 295 IVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 295 iVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
++|+ |--.+....++|.+++++.|+++++
T Consensus 90 ~~EK--P~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 90 LVEK--PLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp EEES--SSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEc--CCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 3564 8888999999999999999999775
No 330
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.68 E-value=2.4e+02 Score=28.98 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecCCCc----------cccchHHHHHHHHHHHcCCc-eEEEEEe
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQ----------KYAWSGYRELFNIIREFNLK-VQVVMAF 329 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~----------qYdWSgY~~Lf~mir~~GLK-lqvVMSF 329 (454)
..+++.||.+||++|++-+ |...+. ..+|..-.+-.+.++++|++ +-..+=+
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~ 225 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALL 225 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEe
No 331
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.68 E-value=2e+02 Score=29.24 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=25.5
Q ss_pred HHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCce
Q 012883 279 MKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (454)
Q Consensus 279 LK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKl 323 (454)
...+|+|.||+| ++.-...++.++++++..-++
T Consensus 212 A~~~GaD~I~LD------------n~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 212 ALEYGADIIMLD------------NMPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred HHHcCCCEEEEC------------CCCHHHHHHHHHHHHhcCCCe
Confidence 347999999999 556678889998888654444
No 332
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=21.63 E-value=72 Score=32.05 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeee
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWG 294 (454)
+.-...+++|.+.|||||||.=.|.
T Consensus 28 e~A~~ea~~l~~~GvD~viveN~~d 52 (257)
T TIGR00259 28 DKAWKDAMALEEGGVDAVMFENFFD 52 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4556778899999999999865554
No 333
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.61 E-value=2.1e+02 Score=26.14 Aligned_cols=42 Identities=19% Similarity=0.045 Sum_probs=32.7
Q ss_pred HHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
+++.++.+|+|-|.+.+-++. ..=.++.+++++.|+++.+-|
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-----------~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-----------ATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-----------HHHHHHHHHHHHcCCEEEEEe
Confidence 678899999999999976531 113678999999999888754
No 334
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.51 E-value=94 Score=33.75 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=8.0
Q ss_pred EEEEeeccee
Q 012883 251 VYVMLANHVI 260 (454)
Q Consensus 251 VyVMLPLdvV 260 (454)
.++|+|||++
T Consensus 283 pn~v~PlD~L 292 (431)
T TIGR01917 283 ADRVIPVDVL 292 (431)
T ss_pred CCeeeeHHHH
Confidence 3789999874
No 335
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.50 E-value=2.2e+02 Score=28.40 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=38.5
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceE
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlq 324 (454)
.+++.+.+.++.++..|+..|.+ + |- ..| ..+...|.++++.|++.+++++
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l-~--gG---~~p-~~~~~~~~~li~~Ik~~~~~i~ 122 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILL-Q--GG---VNP-DLGLDYYEDLFRAIKARFPHIH 122 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE-e--cC---CCC-CCCHHHHHHHHHHHHHHCCCcC
Confidence 46788889999999999998877 2 21 123 4567789999999999876554
No 336
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=21.47 E-value=1.6e+02 Score=28.67 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEE
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVM 327 (454)
+.+..+.+.+...|+|.|.+=+.||-.. ..+...-.+++.+.+++.|+.+.++.
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~----~~~~~~~~~~v~~~~~~~g~pl~vi~ 146 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNVGSET----EAEMLEDLGEVAEECEEWGMPLLAMM 146 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEecCChh----HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 5566677888999999999999998332 12234446667777888899888754
No 337
>PRK14706 glycogen branching enzyme; Provisional
Probab=21.45 E-value=2.5e+02 Score=31.45 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=43.3
Q ss_pred ccccCHHHHHHHH-HHHHhcCcceEEEeeeeeeeecCCCccccchH-----------------HHHHHHHHHHcCCceEE
Q 012883 264 CQLVDPELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQV 325 (454)
Q Consensus 264 ~~l~~~~al~a~L-~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSg-----------------Y~~Lf~mir~~GLKlqv 325 (454)
+.+-.-+.+...| ..||.+||..|++=- |.|- |...+|-| .++|++.+.+.|++|..
T Consensus 161 g~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 161 GWFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3345567788887 789999999997632 3442 34445533 68899999999999876
Q ss_pred EEEee
Q 012883 326 VMAFH 330 (454)
Q Consensus 326 VMSFH 330 (454)
=+-+.
T Consensus 236 D~v~n 240 (639)
T PRK14706 236 DWVPG 240 (639)
T ss_pred Eeccc
Confidence 55553
No 338
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=21.17 E-value=1.5e+02 Score=31.21 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeec----CCCccccchHHHHHHHHHHHcCCceEEEEEe
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~----~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSF 329 (454)
..+..|+.||.+|.|.++.=-===++|. ..|.+-++..+.++.+.+-+.|++--..|-|
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 3455699999999999875221113333 4588999999999999999999999888864
No 339
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=21.16 E-value=1.4e+02 Score=29.69 Aligned_cols=47 Identities=17% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHc
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~ 319 (454)
-+++-++.|+..|.|||.|| |=-....+...-|...|..|++.+|+.
T Consensus 100 fi~~iv~~l~~~~~DGidiD--wE~p~~~~~~~~d~~~~~~ll~~lr~~ 146 (362)
T cd02872 100 FIKSAIAFLRKYGFDGLDLD--WEYPGQRGGPPEDKENFVTLLKELREA 146 (362)
T ss_pred HHHHHHHHHHHcCCCCeeee--eeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999 321111011124677888777766554
No 340
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=21.15 E-value=93 Score=36.03 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=72.2
Q ss_pred ccCHHH---HH-HHHHHHHhcCcceEEEeeeee---eeecCCCcc-ccchHHHHHHHHHHHc--CCceEEEEE------e
Q 012883 266 LVDPEL---IR-QEISHMKALNVDGVIVNCWWG---IVEGWNPQK-YAWSGYRELFNIIREF--NLKVQVVMA------F 329 (454)
Q Consensus 266 l~~~~a---l~-a~L~aLK~~GVdGVmVDVWWG---iVE~~~P~q-YdWSgY~~Lf~mir~~--GLKlqvVMS------F 329 (454)
+.+|+. |. .--..|+++|||||-|||=|- +.+..+.+. .-..+|+.|=.-+.+. +..+...|| |
T Consensus 358 lV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~CMsh~~d~i~ 437 (775)
T PLN02219 358 LVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNTDGLY 437 (775)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccCchhhh
Confidence 455554 33 345679999999999999985 223333333 3445556555544443 566888888 4
Q ss_pred eccCCC---CCCC----------ccc-------------ccchHHHhhhcCCC--------------CeEEecCCCCccC
Q 012883 330 HEYGAN---DSGD----------AWI-------------SLPQWVMEIGKGNQ--------------DIFFTDREGRRNT 369 (454)
Q Consensus 330 HqCGGN---VGD~----------~~I-------------PLP~WV~e~g~~np--------------DIfyTDrsG~Rn~ 369 (454)
|..--+ ++|| +.| =+|.|=+=. ..+| =|+.+|+-|+.|.
T Consensus 438 ~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~~v~PDWDMFq-S~Hp~A~~HAaaRAiSGGPIYvSD~PG~Hdf 516 (775)
T PLN02219 438 SAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFH-SLHPAAEYHGAARAVGGCAIYVSDKPGNHNF 516 (775)
T ss_pred cccccceeecccccccCCCccCcchhhhhhhhhHHhccccccCchhce-ecCccHHHHHHHHhhcCCcEEEecCCCCccH
Confidence 543332 2333 222 267773311 1111 2788999999999
Q ss_pred ceee--eecCccccc----CCCchhHhh
Q 012883 370 ECLS--WGVDKERVL----NGRTGIEVY 391 (454)
Q Consensus 370 EcLS--lgvD~~pVL----~GRTpiq~Y 391 (454)
|.|. ..-|-. || -||+-.+||
T Consensus 517 ~LLk~LvlpDGs-IlR~~~pg~PTrDcl 543 (775)
T PLN02219 517 DLLRKLVLPDGS-VLRAQLPGRPTRDCL 543 (775)
T ss_pred HHHHHhhCCCCc-eeccccCCCcchhhh
Confidence 9985 222321 33 466667777
No 341
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.12 E-value=3.3e+02 Score=24.54 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEe
Q 012883 267 VDPELIRQEISHMKALNVDGVIVN 290 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVD 290 (454)
.|+..+...|++|.++|+|-|.+|
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~ 31 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVD 31 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc
Confidence 467899999999999999999998
No 342
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=21.06 E-value=2.1e+02 Score=28.39 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccC
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCG 333 (454)
.++++..++.||+ ++|-|.||.=||.. ..+ ..|+....=++.+|+..|..-
T Consensus 127 ~~~~~~~v~~lk~-~~D~IIV~~H~g~t-----------sEk--~ala~~ldg~VdvIvGtHTHv 177 (255)
T cd07382 127 FRAADELLEELKE-EADIIFVDFHAEAT-----------SEK--IALGWYLDGRVSAVVGTHTHV 177 (255)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEECCCCC-----------HHH--HHHHHhCCCCceEEEeCCCCc
Confidence 4678899999998 99999999999852 112 233344444689999999653
No 343
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=21.04 E-value=88 Score=30.26 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.3
Q ss_pred HHHHHHhcCcceEEEeeeee
Q 012883 275 EISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWG 294 (454)
.+++....|+|+|++||+--
T Consensus 18 af~~A~~~Gad~iE~DV~lT 37 (258)
T cd08573 18 AFRQAKKNGADGVEFDLEFT 37 (258)
T ss_pred HHHHHHHcCCCEEEEEeeEC
Confidence 34444568999999999974
No 344
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.02 E-value=1.6e+02 Score=27.81 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeee-ecCCCccccchHH----HHHHHHHHHcCCc
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIV-EGWNPQKYAWSGY----RELFNIIREFNLK 322 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiV-E~~~P~qYdWSgY----~~Lf~mir~~GLK 322 (454)
+.++..++..|.+|+.-|.+ -||-. ....+.+ .|... +++.+++++.|++
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQ-IHATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCE
Confidence 55788888889999998765 33421 1111112 13333 6667777777754
No 345
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.00 E-value=90 Score=29.71 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHhcCcceEEEeeeee
Q 012883 275 EISHMKALNVDGVIVNCWWG 294 (454)
Q Consensus 275 ~L~aLK~~GVdGVmVDVWWG 294 (454)
.+++...+|+|+|++||+=-
T Consensus 18 af~~A~~~G~d~iE~DV~~T 37 (235)
T cd08565 18 GFRKALELGVDAVEFDVHLT 37 (235)
T ss_pred HHHHHHHcCCCEEEEeEEEc
Confidence 44444578999999999954
No 346
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=20.83 E-value=7.2e+02 Score=25.62 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=54.5
Q ss_pred cCHHHHHHHHHHHHhc--CcceEEEeeeeeeeecC-CCccccchH----HHHHHHHHHHcCCceEEEEEeeccCCCCCCC
Q 012883 267 VDPELIRQEISHMKAL--NVDGVIVNCWWGIVEGW-NPQKYAWSG----YRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~--GVdGVmVDVWWGiVE~~-~P~qYdWSg----Y~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~ 339 (454)
.+.+.|.+.++.+|.. |++-|+|| ...++... +...+ .. .+.|-.|+++. ++.+|+--|--.+.-+..
T Consensus 287 ~t~~~i~~~~r~~~~~~~~~~lvvID-yLql~~~~~~~~~~--~~~~~i~~~Lk~lAke~--~i~Vi~lsQlnr~~~~r~ 361 (421)
T TIGR03600 287 LTVAQIRSIARRIKRKKGGLDLIVVD-YIQLMAPTRGRDRN--EELGGISRGLKALAKEL--DVPVVLLAQLNRGSEKRT 361 (421)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEe-cccccCCCCCCCHH--HHHHHHHHHHHHHHHHh--CCcEEEecccCcchhhcC
Confidence 3578888999988763 79999999 56666542 12221 11 12344455544 444555555444332222
Q ss_pred cccccchHHHhhh--cCCCC-eEEecCCCCc
Q 012883 340 AWISLPQWVMEIG--KGNQD-IFFTDREGRR 367 (454)
Q Consensus 340 ~~IPLP~WV~e~g--~~npD-IfyTDrsG~R 367 (454)
-.-|.-..+.+-| +.+.| |+|..|....
T Consensus 362 ~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~ 392 (421)
T TIGR03600 362 DKRPIMSDLRDSGAIEQDADVIGLIHREGYY 392 (421)
T ss_pred CCCCChHHHhhcCCccccCcEEEEecccccc
Confidence 3356677787744 44556 6666666443
No 347
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=20.68 E-value=1.5e+02 Score=29.34 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=43.8
Q ss_pred ecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeec-CCCccccchHHHHHHHHHHHcCCceEE
Q 012883 260 INNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 260 V~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~-~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
|..-|.+.+.+.+...-+.||.+|+. ++....|=---+ .+-+.+...+|+.|++.+++.||.+-.
T Consensus 29 IAGpc~ie~~~~~~~~A~~lk~~~~k-~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t 94 (260)
T TIGR01361 29 IAGPCSVESEEQIMETARFVKEAGAK-ILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVT 94 (260)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHHHH-hccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEE
Confidence 33356788999999999999999987 555422220000 111223367899999999999998654
No 348
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.67 E-value=3.4e+02 Score=27.36 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=39.5
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv 325 (454)
.+++.+...++.++..|+..|.+- | +..| .+++..|.+++++|++.+.++++
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~---g---G~~p-~~~~~~~~~i~~~Ik~~~~~i~~ 121 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQ---G---GIHP-DLDGDFYLDILRAVKEEVPGMHI 121 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---e---CCCC-CCCHHHHHHHHHHHHHHCCCceE
Confidence 356888899999999999988765 2 1123 35788899999999998765553
No 349
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.67 E-value=1.8e+02 Score=27.72 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeee-e--ecCCCcccc--chHHHHHHHHHHHcCCce
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGI-V--EGWNPQKYA--WSGYRELFNIIREFNLKV 323 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGi-V--E~~~P~qYd--WSgY~~Lf~mir~~GLKl 323 (454)
+.++..++..+.+|+..|.+ +|- + +......++ ...+++|++++++.|+++
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l 149 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQL---AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTL 149 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEe---cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 45788899999999998854 331 1 111111112 245678889999888654
No 350
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=20.55 E-value=1.1e+02 Score=30.29 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=29.3
Q ss_pred eeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHh
Q 012883 291 CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (454)
Q Consensus 291 VWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e 350 (454)
|||-+---.-...-.=..|+++++.|++..=-- .+|+|-||+ -+.|.|..+
T Consensus 148 viW~l~gd~~~~~~~~~~w~~~~~~i~~~dp~~--L~T~H~~~~-------~~~~~~~~~ 198 (289)
T PF13204_consen 148 VIWILGGDYFDTEKTRADWDAMARGIKENDPYQ--LITIHPCGR-------TSSPDWFHD 198 (289)
T ss_dssp EEEEEESSS--TTSSHHHHHHHHHHHHHH--SS---EEEEE-BT-------EBTHHHHTT
T ss_pred CEEEecCccCCCCcCHHHHHHHHHHHHhhCCCC--cEEEeCCCC-------CCcchhhcC
Confidence 455543221122334456889999999876433 999999996 257777753
No 351
>PRK09989 hypothetical protein; Provisional
Probab=20.53 E-value=2e+02 Score=27.11 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcc--c--cchHHHHHHHHHHHcCCceE
Q 012883 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK--Y--AWSGYRELFNIIREFNLKVQ 324 (454)
Q Consensus 270 ~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~q--Y--dWSgY~~Lf~mir~~GLKlq 324 (454)
+.++..+...+.+|+..|. |++|.+....... + .-.+.++|.+++++.|+++.
T Consensus 85 ~~l~~~i~~A~~lg~~~v~--v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 141 (258)
T PRK09989 85 ADIDLALEYALALNCEQVH--VMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRIL 141 (258)
T ss_pred HHHHHHHHHHHHhCcCEEE--ECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 4566677777899999775 4455432111111 1 22667888888888887764
No 352
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.52 E-value=2.3e+02 Score=30.07 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=43.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEee
Q 012883 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (454)
Q Consensus 267 ~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFH 330 (454)
++..-++.-++.+|+.+||||..=+||| =..|++..| .+-+.+++.|+ |+|.|.
T Consensus 345 ~~~~R~~~l~~li~e~~vDGVI~~~~~~------C~~~s~e~~-~ik~~l~~~GI---P~L~ie 398 (430)
T TIGR03191 345 DPRIKSEMMLNIARDWNVDGCMLHLNRG------CEGLSIGIM-ENRLAIAKAGI---PIMTFE 398 (430)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEEcCCCC------CccchHhHH-HHHHHHHHcCC---CEEEEE
Confidence 3355777777889999999999999998 567888888 57788888885 677776
No 353
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=20.47 E-value=2.2e+02 Score=29.34 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeecC-C--CccccchHHHHHHHHHHHcCCceEEEEE
Q 012883 273 RQEISHMKALNVDGVIVNCWWGIVEGW-N--PQKYAWSGYRELFNIIREFNLKVQVVMA 328 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVWWGiVE~~-~--P~qYdWSgY~~Lf~mir~~GLKlqvVMS 328 (454)
+..|++||..+||-|.+|.- |.-|-- . -..+.=.-|...+.++++.|+++.+=+-
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHit 157 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHIT 157 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEE
Confidence 56789999999999999974 211110 0 0111223599999999999999965443
No 354
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.46 E-value=2.7e+02 Score=27.85 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcC--cceEEEee-eeeeeecCCCccccchH-----HHHHHHHHHHcCCceEEEE
Q 012883 269 PELIRQEISHMKALN--VDGVIVNC-WWGIVEGWNPQKYAWSG-----YRELFNIIREFNLKVQVVM 327 (454)
Q Consensus 269 ~~al~a~L~aLK~~G--VdGVmVDV-WWGiVE~~~P~qYdWSg-----Y~~Lf~mir~~GLKlqvVM 327 (454)
.+.+..-++.+++.| +|.|.+|. |+.. +...-..|+|.. -+++++-+++.|+|+.+++
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~-~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i 93 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSI-EGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNI 93 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccc-CCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 567777777777765 58888884 3322 111123466643 5788888889998886544
No 355
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.45 E-value=1.5e+02 Score=27.86 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCcccc--chHHHHHHHHHHHcCCce
Q 012883 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA--WSGYRELFNIIREFNLKV 323 (454)
Q Consensus 269 ~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYd--WSgY~~Lf~mir~~GLKl 323 (454)
.+.++..+...+.+|+..|.+-.++.-........+. -..+++|.+++++.|+++
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 4677888899999999998663322100000111122 235788899999988654
No 356
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=20.40 E-value=62 Score=32.50 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCcceEEEeee-eeeeecCCCcccc--chHHHHHHHHHHHcCCceEE
Q 012883 273 RQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYA--WSGYRELFNIIREFNLKVQV 325 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVDVW-WGiVE~~~P~qYd--WSgY~~Lf~mir~~GLKlqv 325 (454)
..++++.|.+|+|.|++.-= |.-.......... +.-|.+.+..+++.||++.+
T Consensus 135 ~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnA 190 (239)
T PF03740_consen 135 PEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVNA 190 (239)
T ss_dssp HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEec
Confidence 46788889999999999752 2211111111222 68899999999999999865
No 357
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=20.32 E-value=5.6e+02 Score=27.91 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCCCcccccchHHHh
Q 012883 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (454)
Q Consensus 271 al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e 350 (454)
.++.-+..|+..|++.+.+= .|++- -.+=.+|.+.+++.|+++.+|- +|+=+
T Consensus 164 ~~~~iv~~L~~~~I~~L~vI--------GGdgT--~~~A~~L~ee~~~~g~~I~VIG----------------IPKTI-- 215 (459)
T PTZ00286 164 DPKVMVDTLIRHGINILFTL--------GGDGT--HRGALAIYKELRRRKLNISVVG----------------IPKTI-- 215 (459)
T ss_pred hHHHHHHHHHHcCCCEEEEe--------CCchH--HHHHHHHHHHHHHhCCCceEEE----------------ecccc--
Confidence 46777888999999998752 23333 3456789999999999987763 56544
Q ss_pred hhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecccCcccc
Q 012883 351 IGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGEL 424 (454)
Q Consensus 351 ~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGLGPaGEL 424 (454)
|.||.++|. |||.| |+++...+..++.+.+-...-. -|-=|++=..=||-|
T Consensus 216 ----DNDI~~td~---------S~GFd--------TAv~~~~~aI~~~~~eA~S~~~--~v~iVEvMGR~sG~L 266 (459)
T PTZ00286 216 ----DNDIPIIDE---------SFGFQ--------TAVEEAQNAIRAAYVEAKSAKN--GVGIVKLMGRDSGFI 266 (459)
T ss_pred ----CCCCCCccc---------CcCch--------HHHHHHHHHHHHHHHHHHHhcC--cEEEEEecCcchhHH
Confidence 458999984 77777 4789999999999888776531 244444444444443
No 358
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=20.31 E-value=79 Score=30.54 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcceEEEe
Q 012883 273 RQEISHMKALNVDGVIVN 290 (454)
Q Consensus 273 ~a~L~aLK~~GVdGVmVD 290 (454)
...++.|.++|||||++|
T Consensus 242 ~~~~~~l~~~GVdgIiTD 259 (264)
T cd08575 242 EEDFEEAFDLGADGVMTD 259 (264)
T ss_pred HHHHHHHHhcCCCEEEeC
No 359
>COG4702 Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=71 Score=30.78 Aligned_cols=23 Identities=43% Similarity=0.531 Sum_probs=19.9
Q ss_pred CCCcccChhHHHHHHHHHhCceE
Q 012883 102 PLPARADMNDVLAALAREAGWTV 124 (454)
Q Consensus 102 ~lp~~~d~n~vl~al~~eagw~v 124 (454)
-||+|-|.|-|+++||+.+|--.
T Consensus 139 GlpqreDHnlvv~aL~~~lg~~~ 161 (168)
T COG4702 139 GLPQREDHNLVVRALADHLGIDL 161 (168)
T ss_pred CCCcccchhHHHHHHHHHhCCCh
Confidence 37899999999999999988543
No 360
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.20 E-value=4.7e+02 Score=26.39 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=48.2
Q ss_pred EEEeecceecCC-----ccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEE
Q 012883 252 YVMLANHVINNF-----CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (454)
Q Consensus 252 yVMLPLdvV~~~-----~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvV 326 (454)
.|-+.++.+++. |...+.+.+...++.|+.+|++-|.+|+=.|+ |++ +-...++.++.+.+.|.+...+
T Consensus 112 rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~Gl-----Pgq-t~e~~~~~l~~~~~l~~~~is~ 185 (374)
T PRK05799 112 RLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGL-----PNQ-TLEDWKETLEKVVELNPEHISC 185 (374)
T ss_pred EEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----CCC-CHHHHHHHHHHHHhcCCCEEEE
Confidence 455555655532 34456788889999999999999999998885 332 4456677888888887654333
No 361
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=20.09 E-value=38 Score=27.91 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=9.7
Q ss_pred cceecccCchh
Q 012883 440 IGEFQIFTAKS 450 (454)
Q Consensus 440 iGEFQCYDkym 450 (454)
+|-|.|||++|
T Consensus 24 ~G~l~~~D~~~ 34 (75)
T cd06168 24 VGVFLCTDRDC 34 (75)
T ss_pred EEEEEEEcCCC
Confidence 68899999987
Done!