BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012884
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 155/337 (45%), Gaps = 58/337 (17%)
Query: 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRD---FDGSLILP 132
+ D+V + V+ GDGG+G V +F+R+ G
Sbjct: 2 FVDQVKVYVKGGDGGNGXV-------------------------AFRREKYVPKGGPAGG 36
Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVP 192
GG GGDVV DEG TL +F K+ + A RG + S+ + G A I VP
Sbjct: 37 DGGKGGDVVFEVDEGLRTLXDFRYKKHFKAIRGEHG------XSKNQHGRNADDXVIKVP 90
Query: 193 LGTVVKHKRGK-LFSDLAHPGDEVLVARG-------------GRGGISLLEVPENRRKRM 238
GTVV K + +DL G ++ARG L E E ++R
Sbjct: 91 PGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERY 150
Query: 239 TTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEK 298
L ++ D G P+ GKSTLL+ ++ AKP IADY FTTL+PNLG ++ D
Sbjct: 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDD------ 204
Query: 299 YSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAA---AENPVNDYRTVKE 355
ADLPGLIEGAH G GLG F ID + +P +DY T+ +
Sbjct: 205 -GRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQ 263
Query: 356 ELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 392
EL YN ERP I+V NK D PEA + L++ E++
Sbjct: 264 ELSEYNLRLTERPQIIVANKXDXPEAAENLEAFKEKL 300
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 160/346 (46%), Gaps = 68/346 (19%)
Query: 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDF---DGSLILP 132
+ D ++ITV +G GG GAV SF+R+ G
Sbjct: 2 FQDVLVITVAAGRGGDGAV-------------------------SFRREKFVPKGGPDGG 36
Query: 133 MGGHGGDVVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQL-RGGLAAPTLRIPV 191
GG GG V + A D+L +KR Y A+ G + G S Q RGG L I V
Sbjct: 37 DGGRGGSVYLRARGSVDSLSRL-SKRTYKAEDGEH----GRGSQQHGRGG---EDLVIEV 88
Query: 192 PLGT-VVKHKRGKLFSDLAHPGDEVLVARGG-------------RGGISLLEVPENRRKR 237
P GT V G+L +DL G VLVARGG R E E KR
Sbjct: 89 PRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKR 148
Query: 238 MTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAE 297
L ++ D G PNAGKS+LLAA+T A P IA YPFTTL PNLG ++ E
Sbjct: 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE---E 205
Query: 298 KYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEEL 357
++ TLAD+PG+IEGA GKGLG F +DAA E P+ T+++E+
Sbjct: 206 RF----TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTLETLRKEV 260
Query: 358 RMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE 403
Y+P L RP +V LNK+DL L EE +K D + E
Sbjct: 261 GAYDPALLRRPSLVALNKVDL---------LEEEAVKALADALARE 297
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-DPTLG--AEKYSSEATL---- 305
GLPN GKSTL A+T A + A+YPF T+ PN G + DP L AE E L
Sbjct: 9 GLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTM 68
Query: 306 --ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXID----------AAAENPVNDYRTV 353
D+ GL+ GA G+GLG F + A +P++D T+
Sbjct: 69 EFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTI 128
Query: 354 KEELRMYNPDYLER 367
EL + + D ER
Sbjct: 129 NTELALADLDSCER 142
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA------ 306
GLPN GKSTL A+T A A+YPF T+ N+G + P Y+ + T A
Sbjct: 8 GLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKGERVP 64
Query: 307 ----------DLPGLIEGAHLGKGLGRNF 325
D+ GL++GAH G+GLG F
Sbjct: 65 PVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 22/173 (12%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 312
G PN GKSTLL A+T AKP+IA YPFTT N+G+ + G +Y + D PGL+
Sbjct: 174 GHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED----GYFRYQ----IIDTPGLL 225
Query: 313 EGAHLGKG-LGRNFXXXXXXXXXXXXXIDAAAEN---PVNDYRTVKEELRMYNPDYLERP 368
+ + + + I +E+ P+ + + EE+ + ++ + P
Sbjct: 226 DRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV---HGEFKDLP 282
Query: 369 FIVVLNKIDLPEARD--RLQSLTEEI----LKIGCDKVTSETELSSEDAVKSL 415
F+VV+NKID+ + + RL+ +E +KI K T +L E+ +K+L
Sbjct: 283 FLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG-IDLVKEEIIKTL 334
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA------ 306
GLPN GKSTL A+T A A+YPF T+ N+G + P Y+ + T A
Sbjct: 8 GLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKGERVP 64
Query: 307 ----------DLPGLIEGAHLGKGLGRNF 325
D+ GL++GAH G+GLG F
Sbjct: 65 PVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 27/135 (20%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDPTLGAEKYSS 301
G PN GKST +A T +IA+YPFTT+ N+G L P +Y +
Sbjct: 7 GKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRN 66
Query: 302 EATL-----ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE-----------N 345
L D+ GL+ GAH G+GLG F +DA + +
Sbjct: 67 GLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPEGQPTDYHD 126
Query: 346 PVNDYRTVKEELRMY 360
PV D ++ E+ +
Sbjct: 127 PVEDIEFLEREIDYW 141
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 20/143 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD-GDPTLG--------AEKYSSEA 303
GLPN GKST +T+++ ++PF T+ PN R+ D A K +
Sbjct: 29 GLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFL 88
Query: 304 TLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE----------NPVNDYRTV 353
+ D+ GL++GAH G+GLG F A + +P+ D +
Sbjct: 89 NVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEII 148
Query: 354 KEELRMYNPDYLERPFIVVLNKI 376
EEL++ + + + P I L K+
Sbjct: 149 HEELQLKDEEMI-GPIIDKLEKV 170
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPG 310
G P+ GKSTLL+ +T + + A+Y FTTL +P + R G ++ + DLPG
Sbjct: 79 GFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG----------AKIQMLDLPG 128
Query: 311 LIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEEL 357
+I+GA G+G G+ +D P++ + +++EL
Sbjct: 129 IIDGAKDGRGRGKQVIAVARTCNLLFIILD--VNKPLHHKQIIEKEL 173
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 253 GLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRL---DGDPTLGAEKYSSEA----- 303
G PN GKST AIT + + A+YP+ T+ P ++ D E Y ++
Sbjct: 27 GXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF 86
Query: 304 -TLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE----------NPVNDYRT 352
T+ D+ GL +GA G GLG F + A + +P+ D
Sbjct: 87 LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSI 146
Query: 353 VKEELRMYNPDYLER 367
+ +EL + + +++E+
Sbjct: 147 IVDELLIKDAEFVEK 161
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 29/157 (18%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 312
G PN GK+TL A+T+A + ++P T + + G+ LG + DLPG+
Sbjct: 8 GNPNCGKTTLFNALTNANQRVGNWPGVT----VEKKTGEFLLGEHLIE----ITDLPGVY 59
Query: 313 EGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYLE---RPF 369
+G+ ++ ID + +N E +Y L +P
Sbjct: 60 SLVANAEGISQD------EQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPV 113
Query: 370 IVVLNKIDLPEAR------DRLQSLTEEILKIGCDKV 400
+V LN +D+ E R ++L+SL +GC +
Sbjct: 114 VVALNMMDIAEHRGISIDTEKLESL------LGCSVI 144
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 312
G PN GKS+ + ++ A D+ Y FTT +G D KY + D PGL+
Sbjct: 36 GAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK----LNKYQ----IIDTPGLL 87
Query: 313 EGA 315
+ A
Sbjct: 88 DRA 90
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 68/177 (38%), Gaps = 23/177 (12%)
Query: 216 LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDI-A 274
LV RG +LE P RR M R G N GKS+ + A+ I +
Sbjct: 10 LVPRGSH----MLEDP--RRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS 63
Query: 275 DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXX 334
DY TT P ++ P TL D PGL + LG+
Sbjct: 64 DYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADC 116
Query: 335 XXXXIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID-LPEARDRLQSLTE 390
D+A +D + +E+ E PF+VV+NKID L E + L+ L E
Sbjct: 117 GILVTDSAPTPYEDDVVNLFKEM--------EIPFVVVVNKIDVLGEKAEELKGLYE 165
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 158 RRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKL 204
R A GG +D + L S RG L P+L + LG V+ KRGKL
Sbjct: 48 RHLKATHGGRIDYIAGLDS--RGFLFGPSLAQELGLGCVLIRKRGKL 92
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 312
G PN GK+T+ A+T + + ++P T+ G + E E + DLPG+
Sbjct: 10 GNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIM--------EYREKEFLVVDLPGIY 61
Query: 313 E-GAH-LGKGLGRNF 325
AH + + + RNF
Sbjct: 62 SLTAHSIDELIARNF 76
>pdb|4ATZ|A Chain A, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|B Chain B, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|C Chain C, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 201
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 74 HKYFDRVLITVRSGDGGHG-AVLRMPTQSAVAKSHGKLAKEN 114
+ + D R+GD G AV MP SA KSHGK AK N
Sbjct: 94 NSFLDPEYWNFRNGDLTEGNAVGFMPNLSAYPKSHGKTAKSN 135
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 310
G PN GK++L A+T K +A++P T+ G + Y+ L DLPG
Sbjct: 12 GCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYT--INLIDLPG 61
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTL 281
G PN GK++L A+T K +A++P T+
Sbjct: 12 GCPNVGKTSLFNALTGTKQYVANWPGVTV 40
>pdb|1OJQ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus
pdb|1OJZ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus In With
Nad
Length = 212
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 172 GVLSSQLRGGLAAP----TLRIPVPLGTVVKHKRGKLFSDLAHPGD-EVLVARGGRGGIS 226
G S+QL G A L++ +P GT + K + A+PG EVL+ RG +
Sbjct: 135 GYSSTQLVSGAALAGRPIELKLELPKGTKAAYIDSKELT--AYPGQQEVLLPRGTEYAVG 192
Query: 227 LLEVPENRRKRMTT 240
+++ +N+RK + T
Sbjct: 193 SVKLSDNKRKIIIT 206
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTL 281
G PN GK++L A+T K +A++P T+
Sbjct: 12 GCPNVGKTSLFNALTGTKQYVANWPGVTV 40
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311
G PN GKST+ A+T I ++P T + + +G+ EK+ + DLPG+
Sbjct: 14 GNPNVGKSTIFNALTGENVYIGNWPGVT----VEKKEGEFEYNGEKFK----VVDLPGV 64
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311
G PN GKST+ A+T I ++P T+ + +G+ EK+ + DLPG+
Sbjct: 11 GNPNVGKSTIFNALTGENVYIGNWPGVTVE----KKEGEFEYNGEKFK----VVDLPGV 61
>pdb|3IZO|F Chain F, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|G Chain G, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
pdb|3IZO|H Chain H, Model Of The Fiber Tail And Its Interactions With The
Penton Base Of Human Adenovirus By Cryo-Electron
Microscopy
Length = 581
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 74 HKYFDRVLITVRSGDGGHG-----AVLRMPTQSAVAKSHGKLAKEN 114
+ + D R+GD G AV MP SA KSHGK AK N
Sbjct: 470 NSFLDPEYWNFRNGDLTEGTAYTNAVGFMPNLSAYPKSHGKTAKSN 515
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311
G PN GKST+ A+T I ++P T + + +G+ EK+ + DLPG+
Sbjct: 10 GNPNVGKSTIFNALTGENVYIGNWPGVT----VEKKEGEFEYNGEKFK----VVDLPGV 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311
G PN GKST+ A+T I ++P T + + +G+ EK+ + DLPG+
Sbjct: 10 GNPNVGKSTIFNALTGENVYIGNWPGVT----VEKKEGEFEYNGEKFK----VVDLPGV 60
>pdb|1KNB|A Chain A, Crystal Structure Of The Receptor-Binding Domain Of
Adenovirus Type 5 Fiber Protein At 1.7 Angstroms
Resolution
Length = 196
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 74 HKYFDRVLITVRSGDGGHG-----AVLRMPTQSAVAKSHGKLAKEN 114
+ + D R+GD G AV MP SA KSHGK AK N
Sbjct: 85 NSFLDPEYWNFRNGDLTEGTAYTNAVGFMPNLSAYPKSHGKTAKSN 130
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 166 GNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVV 197
G ++G++ +L+G L ++R+PVP G++V
Sbjct: 233 GAAKAVGLVLPELKGKLNGTSMRVPVPTGSIV 264
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA--DLPG 310
G PN GKSTLL + K + + P G LG + +EA + D PG
Sbjct: 16 GKPNVGKSTLLNNLLGTK-------VSIISPKAGTTRMR-VLGVKNIPNEAQIIFLDTPG 67
Query: 311 LIEGAH---LGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYLER 367
+ E LG + IDA +R EE+ L +
Sbjct: 68 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDAT-----EGWRPRDEEIYQNFIKPLNK 122
Query: 368 PFIVVLNKID 377
P IVV+NKID
Sbjct: 123 PVIVVINKID 132
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA--DLPG 310
G PN GKSTLL + K + + P G LG + +EA + D PG
Sbjct: 17 GKPNVGKSTLLNNLLGTK-------VSIISPKAGTTRMR-VLGVKNIPNEAQIIFLDTPG 68
Query: 311 LIEGAH---LGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYLER 367
+ E LG + IDA +R EE+ L +
Sbjct: 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDAT-----EGWRPRDEEIYQNFIKPLNK 123
Query: 368 PFIVVLNKID 377
P IVV+NKID
Sbjct: 124 PVIVVINKID 133
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 27/98 (27%)
Query: 339 IDAA----AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEIL 393
IDA+ A+ N ++ V+++L + I V+NKIDLP A DR++ EE+L
Sbjct: 104 IDASQGIEAQTVANFWKAVEQDLVI----------IPVINKIDLPSADVDRVKKQIEEVL 153
Query: 394 KIGCDKVTSETELSSEDAVKSLSTEG-GEADLLSSVTS 430
L E+A+ + + EG G ++L ++ +
Sbjct: 154 G-----------LDPEEAILASAKEGIGIEEILEAIVN 180
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 27/98 (27%)
Query: 339 IDAA----AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEIL 393
IDA+ A+ N ++ V+++L + I V+NKIDLP A DR++ EE+L
Sbjct: 104 IDASQGIEAQTVANFWKAVEQDLVI----------IPVINKIDLPSADVDRVKKQIEEVL 153
Query: 394 KIGCDKVTSETELSSEDAVKSLSTEG-GEADLLSSVTS 430
L E+A+ + + EG G ++L ++ +
Sbjct: 154 G-----------LDPEEAILASAKEGIGIEEILEAIVN 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,264,282
Number of Sequences: 62578
Number of extensions: 564510
Number of successful extensions: 1108
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 39
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)