Query 012884
Match_columns 454
No_of_seqs 386 out of 3268
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 1.9E-79 4E-84 605.7 27.7 314 74-422 1-335 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 8.3E-70 1.8E-74 551.9 29.2 310 75-419 1-327 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 2.2E-69 4.8E-74 562.4 28.0 311 75-421 1-328 (424)
4 PRK12296 obgE GTPase CgtA; Rev 100.0 8.7E-69 1.9E-73 564.9 26.9 312 74-421 2-341 (500)
5 TIGR02729 Obg_CgtA Obg family 100.0 1.4E-67 2.9E-72 534.9 28.0 306 76-417 1-326 (329)
6 PRK12298 obgE GTPase CgtA; Rev 100.0 1.5E-67 3.3E-72 545.1 28.1 312 75-421 2-334 (390)
7 KOG1489 Predicted GTP-binding 100.0 1E-66 2.2E-71 509.5 23.2 320 59-415 24-362 (366)
8 PF01018 GTP1_OBG: GTP1/OBG; 100.0 5.7E-36 1.2E-40 272.2 6.9 126 76-229 1-127 (156)
9 COG1160 Predicted GTPases [Gen 100.0 9.2E-29 2E-33 254.3 12.0 243 189-445 111-376 (444)
10 cd01898 Obg Obg subfamily. Th 99.9 3.8E-23 8.3E-28 187.4 15.1 164 247-417 1-168 (170)
11 COG1163 DRG Predicted GTPase [ 99.9 5.4E-22 1.2E-26 196.1 14.5 163 246-420 63-289 (365)
12 PRK03003 GTP-binding protein D 99.9 5E-22 1.1E-26 211.1 14.0 242 190-445 146-407 (472)
13 TIGR03594 GTPase_EngA ribosome 99.9 7.2E-22 1.6E-26 206.7 14.4 215 190-419 107-343 (429)
14 COG0012 Predicted GTPase, prob 99.9 1.9E-21 4.2E-26 196.6 12.6 111 247-357 3-133 (372)
15 PRK00093 GTP-binding protein D 99.9 3.1E-21 6.8E-26 202.5 13.8 215 190-419 109-343 (435)
16 cd01899 Ygr210 Ygr210 subfamil 99.9 1.9E-21 4.2E-26 196.6 11.6 174 249-422 1-271 (318)
17 PTZ00258 GTP-binding protein; 99.9 3.1E-21 6.7E-26 199.1 12.3 149 247-395 22-252 (390)
18 PRK09518 bifunctional cytidyla 99.8 5.8E-21 1.3E-25 212.2 15.0 241 190-445 383-646 (712)
19 cd01881 Obg_like The Obg-like 99.8 1.1E-20 2.5E-25 171.6 12.8 160 251-417 1-174 (176)
20 COG1159 Era GTPase [General fu 99.8 1.7E-20 3.8E-25 184.4 13.4 162 248-423 8-175 (298)
21 PRK09601 GTP-binding protein Y 99.8 1.4E-20 3E-25 192.4 12.0 113 248-360 4-135 (364)
22 COG1160 Predicted GTPases [Gen 99.8 2.4E-20 5.2E-25 192.4 13.5 155 247-419 4-164 (444)
23 PF02421 FeoB_N: Ferrous iron 99.8 2.3E-21 5E-26 176.8 4.6 149 248-414 2-155 (156)
24 PRK09602 translation-associate 99.8 2.1E-20 4.6E-25 194.2 12.3 112 248-359 3-143 (396)
25 TIGR00436 era GTP-binding prot 99.8 9.2E-20 2E-24 180.3 14.6 159 248-421 2-165 (270)
26 cd01900 YchF YchF subfamily. 99.8 1.8E-20 3.9E-25 185.7 9.4 113 249-361 1-132 (274)
27 COG1084 Predicted GTPase [Gene 99.8 2.1E-19 4.6E-24 178.3 13.4 137 247-398 169-311 (346)
28 TIGR03156 GTP_HflX GTP-binding 99.8 1.6E-19 3.4E-24 185.2 12.3 159 246-417 189-349 (351)
29 cd01896 DRG The developmentall 99.8 4.2E-19 9E-24 172.3 12.8 160 247-420 1-226 (233)
30 COG0486 ThdF Predicted GTPase 99.8 2.4E-19 5.2E-24 185.5 8.6 156 248-420 219-376 (454)
31 cd01897 NOG NOG1 is a nucleola 99.8 2.2E-18 4.8E-23 156.1 13.7 159 248-418 2-166 (168)
32 PRK11058 GTPase HflX; Provisio 99.8 1.7E-18 3.7E-23 181.6 13.1 162 246-419 197-361 (426)
33 COG2262 HflX GTPases [General 99.8 3.1E-18 6.8E-23 174.6 11.6 162 246-420 192-356 (411)
34 KOG1491 Predicted GTP-binding 99.8 3.4E-18 7.3E-23 170.0 11.3 111 248-358 22-151 (391)
35 cd01878 HflX HflX subfamily. 99.7 1.3E-17 2.9E-22 156.9 13.3 157 246-417 41-202 (204)
36 cd01894 EngA1 EngA1 subfamily. 99.7 1.8E-17 3.8E-22 147.4 12.7 150 250-417 1-155 (157)
37 PRK00089 era GTPase Era; Revie 99.7 2.3E-17 4.9E-22 164.5 14.6 160 248-421 7-172 (292)
38 PRK15494 era GTPase Era; Provi 99.7 2.1E-17 4.5E-22 168.9 13.4 159 247-421 53-217 (339)
39 cd01879 FeoB Ferrous iron tran 99.7 3.6E-17 7.7E-22 146.0 13.1 151 251-418 1-155 (158)
40 cd01861 Rab6 Rab6 subfamily. 99.7 2.2E-17 4.8E-22 148.2 11.6 155 248-417 2-159 (161)
41 cd01895 EngA2 EngA2 subfamily. 99.7 8E-17 1.7E-21 144.8 14.4 157 247-417 3-172 (174)
42 PF01926 MMR_HSR1: 50S ribosom 99.7 1E-17 2.3E-22 144.0 7.6 113 248-375 1-116 (116)
43 cd04171 SelB SelB subfamily. 99.7 1E-16 2.2E-21 143.7 14.2 149 249-416 3-162 (164)
44 cd04142 RRP22 RRP22 subfamily. 99.7 6.8E-17 1.5E-21 152.8 13.5 167 248-420 2-174 (198)
45 cd01868 Rab11_like Rab11-like. 99.7 4.3E-17 9.4E-22 147.3 11.1 157 247-418 4-163 (165)
46 cd04136 Rap_like Rap-like subf 99.7 7.3E-17 1.6E-21 144.9 12.5 156 248-418 3-161 (163)
47 TIGR00092 GTP-binding protein 99.7 2.2E-17 4.8E-22 169.1 9.4 115 248-362 4-138 (368)
48 TIGR03594 GTPase_EngA ribosome 99.7 6.2E-17 1.3E-21 169.5 12.5 155 248-420 1-160 (429)
49 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.3E-16 2.7E-21 142.6 12.5 155 248-417 3-159 (162)
50 cd01866 Rab2 Rab2 subfamily. 99.7 1E-16 2.2E-21 146.2 11.8 158 247-419 5-165 (168)
51 cd04160 Arfrp1 Arfrp1 subfamil 99.7 8.9E-17 1.9E-21 145.4 11.2 153 248-417 1-166 (167)
52 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.6E-16 3.4E-21 149.8 13.3 161 248-421 2-169 (201)
53 PRK05291 trmE tRNA modificatio 99.7 4.2E-17 9E-22 172.5 10.2 153 247-420 216-370 (449)
54 cd01864 Rab19 Rab19 subfamily. 99.7 9.6E-17 2.1E-21 145.5 11.2 156 247-418 4-164 (165)
55 cd01867 Rab8_Rab10_Rab13_like 99.7 1.7E-16 3.7E-21 144.5 12.3 158 247-419 4-164 (167)
56 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2E-16 4.4E-21 142.2 12.3 156 248-418 4-162 (164)
57 cd01865 Rab3 Rab3 subfamily. 99.7 2.2E-16 4.7E-21 143.5 12.5 156 248-418 3-161 (165)
58 cd04114 Rab30 Rab30 subfamily. 99.7 1.9E-16 4.1E-21 143.5 12.0 159 245-418 6-167 (169)
59 PRK03003 GTP-binding protein D 99.7 1.2E-16 2.5E-21 170.2 12.1 156 246-419 38-198 (472)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.6E-16 3.5E-21 143.9 11.3 158 247-419 3-163 (166)
61 cd04109 Rab28 Rab28 subfamily. 99.7 1.9E-16 4.2E-21 151.0 12.4 162 248-421 2-167 (215)
62 cd01890 LepA LepA subfamily. 99.7 4.2E-16 9.2E-21 142.7 14.0 156 247-418 1-175 (179)
63 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.4E-16 3.1E-21 167.9 12.0 154 247-419 204-359 (442)
64 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.4E-16 3E-21 141.3 10.0 150 248-417 3-154 (157)
65 cd04119 RJL RJL (RabJ-Like) su 99.7 2.6E-16 5.6E-21 141.4 11.9 157 248-418 2-165 (168)
66 cd04112 Rab26 Rab26 subfamily. 99.7 1.8E-16 4E-21 148.1 11.3 159 248-421 2-164 (191)
67 cd04120 Rab12 Rab12 subfamily. 99.7 3.2E-16 6.9E-21 149.0 12.9 157 248-420 2-163 (202)
68 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.8E-16 6E-21 141.7 11.6 156 248-418 2-162 (164)
69 cd01863 Rab18 Rab18 subfamily. 99.7 4.3E-16 9.4E-21 140.0 12.8 154 248-417 2-159 (161)
70 cd04175 Rap1 Rap1 subgroup. T 99.7 3.3E-16 7.2E-21 141.6 12.1 155 248-418 3-161 (164)
71 smart00175 RAB Rab subfamily o 99.7 3.2E-16 6.9E-21 140.7 11.7 156 248-419 2-161 (164)
72 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 8.4E-16 1.8E-20 138.7 14.4 153 248-418 2-164 (168)
73 PRK00093 GTP-binding protein D 99.7 2.6E-16 5.7E-21 165.3 12.3 153 247-417 2-159 (435)
74 cd04157 Arl6 Arl6 subfamily. 99.7 3.8E-16 8.2E-21 140.1 11.5 152 248-416 1-160 (162)
75 cd04146 RERG_RasL11_like RERG/ 99.7 3.4E-16 7.4E-21 141.8 11.2 158 248-419 1-163 (165)
76 smart00173 RAS Ras subfamily o 99.7 4.9E-16 1.1E-20 140.1 12.1 157 248-419 2-161 (164)
77 cd04122 Rab14 Rab14 subfamily. 99.7 3.6E-16 7.9E-21 142.0 11.2 157 247-419 3-163 (166)
78 cd04124 RabL2 RabL2 subfamily. 99.7 8.2E-16 1.8E-20 139.5 13.2 152 248-418 2-156 (161)
79 cd04113 Rab4 Rab4 subfamily. 99.7 5.4E-16 1.2E-20 139.6 11.9 155 248-417 2-159 (161)
80 cd00154 Rab Rab family. Rab G 99.7 6.5E-16 1.4E-20 136.3 11.9 154 248-416 2-158 (159)
81 cd04144 Ras2 Ras2 subfamily. 99.7 4E-16 8.7E-21 145.7 11.1 159 248-420 1-163 (190)
82 cd04163 Era Era subfamily. Er 99.7 1.1E-15 2.3E-20 135.9 13.1 156 248-417 5-166 (168)
83 cd04123 Rab21 Rab21 subfamily. 99.7 9E-16 1.9E-20 137.0 12.5 156 248-418 2-160 (162)
84 cd04116 Rab9 Rab9 subfamily. 99.7 1.1E-15 2.4E-20 138.9 12.9 158 247-417 6-168 (170)
85 KOG1486 GTP-binding protein DR 99.7 2.6E-16 5.7E-21 150.9 8.9 105 247-361 63-167 (364)
86 PRK04213 GTP-binding protein; 99.7 1.9E-15 4.1E-20 141.8 14.6 155 247-419 10-191 (201)
87 cd04106 Rab23_lke Rab23-like s 99.6 9.2E-16 2E-20 137.8 11.7 155 248-417 2-160 (162)
88 TIGR03598 GTPase_YsxC ribosome 99.6 7.9E-16 1.7E-20 142.4 11.5 145 246-407 18-177 (179)
89 cd04176 Rap2 Rap2 subgroup. T 99.6 1E-15 2.2E-20 138.0 11.9 155 248-418 3-161 (163)
90 cd00876 Ras Ras family. The R 99.6 1.1E-15 2.3E-20 136.3 11.7 155 248-417 1-158 (160)
91 cd04158 ARD1 ARD1 subfamily. 99.6 9.6E-16 2.1E-20 140.2 11.7 152 248-419 1-160 (169)
92 cd04132 Rho4_like Rho4-like su 99.6 1.4E-15 3E-20 140.8 12.7 158 248-421 2-168 (187)
93 cd04140 ARHI_like ARHI subfami 99.6 1.3E-15 2.7E-20 138.4 11.8 155 248-416 3-161 (165)
94 KOG1191 Mitochondrial GTPase [ 99.6 2.2E-16 4.8E-21 163.4 7.5 126 247-381 269-404 (531)
95 cd01862 Rab7 Rab7 subfamily. 99.6 1.4E-15 3E-20 137.8 11.9 159 248-419 2-166 (172)
96 cd04151 Arl1 Arl1 subfamily. 99.6 1.1E-15 2.5E-20 137.6 10.7 148 248-416 1-156 (158)
97 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1.1E-15 2.5E-20 140.6 10.9 151 247-417 16-173 (174)
98 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.9E-15 4.2E-20 139.6 12.5 154 247-417 2-172 (175)
99 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.8E-15 4E-20 138.2 12.0 158 247-418 3-167 (170)
100 PRK09518 bifunctional cytidyla 99.6 8.8E-16 1.9E-20 170.9 11.9 158 244-419 273-435 (712)
101 smart00178 SAR Sar1p-like memb 99.6 1.1E-15 2.4E-20 142.2 10.6 151 247-417 18-182 (184)
102 cd04118 Rab24 Rab24 subfamily. 99.6 2.5E-15 5.5E-20 139.9 13.0 157 248-420 2-166 (193)
103 cd01889 SelB_euk SelB subfamil 99.6 2.4E-15 5.2E-20 140.7 12.7 157 248-417 2-183 (192)
104 PRK00454 engB GTP-binding prot 99.6 4.6E-15 1E-19 138.0 14.4 158 245-419 23-193 (196)
105 cd04139 RalA_RalB RalA/RalB su 99.6 2.3E-15 5.1E-20 134.8 11.9 157 248-419 2-161 (164)
106 cd04177 RSR1 RSR1 subgroup. R 99.6 2E-15 4.2E-20 137.6 11.6 157 248-419 3-163 (168)
107 cd00881 GTP_translation_factor 99.6 4.7E-15 1E-19 136.0 14.0 150 249-419 2-186 (189)
108 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.6E-15 3.4E-20 138.8 10.8 149 249-417 2-166 (167)
109 KOG0084 GTPase Rab1/YPT1, smal 99.6 2.3E-15 5.1E-20 139.8 11.9 159 246-421 9-173 (205)
110 cd04117 Rab15 Rab15 subfamily. 99.6 3.1E-15 6.8E-20 135.8 12.6 152 248-417 2-159 (161)
111 cd04127 Rab27A Rab27a subfamil 99.6 2.8E-15 6E-20 137.6 12.4 164 247-418 5-175 (180)
112 cd01892 Miro2 Miro2 subfamily. 99.6 2.2E-15 4.7E-20 138.3 11.6 157 246-419 4-165 (169)
113 PLN03110 Rab GTPase; Provision 99.6 2E-15 4.2E-20 144.5 11.7 159 246-419 12-173 (216)
114 cd00879 Sar1 Sar1 subfamily. 99.6 1.8E-15 3.9E-20 140.4 11.1 151 247-417 20-188 (190)
115 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.4E-15 5.1E-20 135.0 11.4 149 248-416 1-156 (158)
116 cd04154 Arl2 Arl2 subfamily. 99.6 1.8E-15 3.9E-20 138.6 10.8 150 247-416 15-171 (173)
117 cd04133 Rop_like Rop subfamily 99.6 4.2E-15 9.1E-20 138.2 13.3 156 247-419 2-172 (176)
118 PTZ00369 Ras-like protein; Pro 99.6 1.7E-15 3.7E-20 141.3 10.7 159 247-420 6-167 (189)
119 cd00877 Ran Ran (Ras-related n 99.6 3.6E-15 7.8E-20 136.3 12.6 155 248-419 2-158 (166)
120 PRK09554 feoB ferrous iron tra 99.6 2.7E-15 5.9E-20 167.5 14.2 155 248-418 5-166 (772)
121 cd04121 Rab40 Rab40 subfamily. 99.6 2.9E-15 6.2E-20 140.9 12.3 157 246-419 6-166 (189)
122 COG0370 FeoB Fe2+ transport sy 99.6 1.2E-15 2.5E-20 164.2 10.7 153 248-417 5-161 (653)
123 cd04110 Rab35 Rab35 subfamily. 99.6 3.2E-15 6.9E-20 140.9 12.5 157 247-420 7-167 (199)
124 cd00880 Era_like Era (E. coli 99.6 6.4E-15 1.4E-19 128.9 13.6 154 251-417 1-161 (163)
125 cd01893 Miro1 Miro1 subfamily. 99.6 5E-15 1.1E-19 134.8 13.3 152 248-417 2-161 (166)
126 cd04111 Rab39 Rab39 subfamily. 99.6 3.9E-15 8.4E-20 142.0 12.8 158 248-419 4-165 (211)
127 cd01860 Rab5_related Rab5-rela 99.6 3.9E-15 8.4E-20 133.9 12.0 154 248-418 3-161 (163)
128 cd04125 RabA_like RabA-like su 99.6 3.9E-15 8.4E-20 138.4 12.3 157 248-419 2-161 (188)
129 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 3.1E-15 6.6E-20 137.8 11.5 156 248-419 4-163 (172)
130 cd04147 Ras_dva Ras-dva subfam 99.6 4.3E-15 9.4E-20 139.7 12.6 158 248-420 1-163 (198)
131 cd04150 Arf1_5_like Arf1-Arf5- 99.6 3.3E-15 7.2E-20 135.6 11.4 149 248-416 2-157 (159)
132 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 6.1E-15 1.3E-19 135.5 13.1 157 248-419 2-164 (170)
133 cd04134 Rho3 Rho3 subfamily. 99.6 5.1E-15 1.1E-19 138.3 12.7 157 248-421 2-175 (189)
134 smart00174 RHO Rho (Ras homolo 99.6 6.7E-15 1.4E-19 134.2 13.0 154 249-419 1-171 (174)
135 PLN03118 Rab family protein; P 99.6 5.3E-15 1.2E-19 140.5 12.7 159 247-421 15-178 (211)
136 cd04149 Arf6 Arf6 subfamily. 99.6 2.4E-15 5.3E-20 138.0 10.0 150 247-416 10-166 (168)
137 cd04156 ARLTS1 ARLTS1 subfamil 99.6 4.8E-15 1.1E-19 133.1 11.7 150 248-416 1-158 (160)
138 COG0218 Predicted GTPase [Gene 99.6 1.4E-14 3.1E-19 135.8 15.2 155 245-417 23-194 (200)
139 cd04135 Tc10 TC10 subfamily. 99.6 7.5E-15 1.6E-19 133.8 12.8 154 248-418 2-172 (174)
140 cd01871 Rac1_like Rac1-like su 99.6 6.5E-15 1.4E-19 136.0 12.5 153 248-417 3-172 (174)
141 cd04143 Rhes_like Rhes_like su 99.6 4.8E-15 1E-19 145.1 12.1 159 248-420 2-171 (247)
142 cd01870 RhoA_like RhoA-like su 99.6 7E-15 1.5E-19 134.1 12.4 154 248-418 3-173 (175)
143 cd04131 Rnd Rnd subfamily. Th 99.6 7.4E-15 1.6E-19 136.5 12.6 153 248-417 3-173 (178)
144 PLN03108 Rab family protein; P 99.6 6.6E-15 1.4E-19 140.2 12.4 159 247-420 7-168 (210)
145 cd04166 CysN_ATPS CysN_ATPS su 99.6 3.5E-15 7.5E-20 142.0 10.1 142 248-409 1-183 (208)
146 KOG1423 Ras-like GTPase ERA [C 99.6 3.2E-15 7E-20 147.1 10.0 131 247-390 73-209 (379)
147 TIGR02528 EutP ethanolamine ut 99.6 3.6E-15 7.7E-20 131.8 9.2 137 248-416 2-141 (142)
148 cd00157 Rho Rho (Ras homology) 99.6 1.6E-14 3.5E-19 130.7 13.6 152 248-416 2-169 (171)
149 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 7.8E-15 1.7E-19 136.3 11.6 157 248-419 5-169 (183)
150 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 9.7E-15 2.1E-19 136.4 12.2 154 247-417 6-177 (182)
151 cd04137 RheB Rheb (Ras Homolog 99.6 5.6E-15 1.2E-19 135.7 10.3 159 247-420 2-163 (180)
152 cd04159 Arl10_like Arl10-like 99.6 6.5E-15 1.4E-19 130.1 10.2 150 248-416 1-157 (159)
153 cd04126 Rab20 Rab20 subfamily. 99.6 1.2E-14 2.5E-19 140.1 12.6 152 248-419 2-189 (220)
154 PLN03071 GTP-binding nuclear p 99.6 1.3E-14 2.8E-19 139.3 12.6 156 247-420 14-172 (219)
155 cd01875 RhoG RhoG subfamily. 99.6 1.2E-14 2.6E-19 136.3 11.9 157 248-421 5-178 (191)
156 cd04148 RGK RGK subfamily. Th 99.6 9.3E-15 2E-19 140.5 11.3 157 248-420 2-163 (221)
157 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.8E-14 3.8E-19 132.1 12.7 152 248-416 2-170 (173)
158 PLN00223 ADP-ribosylation fact 99.6 9.4E-15 2E-19 136.0 10.8 150 248-419 19-177 (181)
159 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 1.9E-14 4.1E-19 139.8 13.3 156 247-419 14-187 (232)
160 KOG0078 GTP-binding protein SE 99.6 1.5E-14 3.2E-19 136.0 12.0 157 246-420 12-174 (207)
161 smart00177 ARF ARF-like small 99.6 1.2E-14 2.6E-19 134.2 10.9 152 247-418 14-172 (175)
162 TIGR00231 small_GTP small GTP- 99.6 2.6E-14 5.7E-19 125.0 12.3 153 247-415 2-159 (161)
163 cd04155 Arl3 Arl3 subfamily. 99.6 1.3E-14 2.9E-19 132.0 10.2 151 247-417 15-172 (173)
164 TIGR00437 feoB ferrous iron tr 99.6 1.4E-14 3.1E-19 157.9 12.1 149 253-418 1-153 (591)
165 cd01891 TypA_BipA TypA (tyrosi 99.5 2.9E-14 6.3E-19 133.6 11.5 126 246-392 2-145 (194)
166 PTZ00133 ADP-ribosylation fact 99.5 2.3E-14 5E-19 133.4 10.3 153 247-419 18-177 (182)
167 PRK15467 ethanolamine utilizat 99.5 2.5E-14 5.4E-19 130.5 10.2 140 248-419 3-146 (158)
168 cd04128 Spg1 Spg1p. Spg1p (se 99.5 6.9E-14 1.5E-18 130.4 13.2 155 248-419 2-165 (182)
169 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 4.1E-14 8.9E-19 136.5 11.7 155 248-419 3-175 (222)
170 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 4.5E-14 9.8E-19 128.9 11.4 113 249-381 2-114 (164)
171 cd04103 Centaurin_gamma Centau 99.5 5.5E-14 1.2E-18 128.0 11.7 149 248-417 2-156 (158)
172 cd01876 YihA_EngB The YihA (En 99.5 1.2E-13 2.7E-18 123.1 12.9 153 248-417 1-168 (170)
173 cd01884 EF_Tu EF-Tu subfamily. 99.5 7.4E-14 1.6E-18 132.1 11.6 129 248-397 4-153 (195)
174 cd01873 RhoBTB RhoBTB subfamil 99.5 1.1E-13 2.4E-18 130.7 12.7 151 248-417 4-193 (195)
175 KOG1490 GTP-binding protein CR 99.5 1.6E-14 3.4E-19 149.8 7.0 160 247-419 169-340 (620)
176 cd04129 Rho2 Rho2 subfamily. 99.5 1.3E-13 2.8E-18 128.4 11.9 155 248-419 3-172 (187)
177 PF00009 GTP_EFTU: Elongation 99.5 8.9E-14 1.9E-18 129.9 10.7 153 246-417 3-184 (188)
178 smart00176 RAN Ran (Ras-relate 99.5 1.5E-13 3.2E-18 130.5 12.0 151 252-420 1-154 (200)
179 PF00071 Ras: Ras family; Int 99.5 8.8E-14 1.9E-18 125.1 9.0 154 248-418 1-159 (162)
180 TIGR00487 IF-2 translation ini 99.5 2.9E-13 6.3E-18 147.3 14.5 148 247-416 88-246 (587)
181 cd00882 Ras_like_GTPase Ras-li 99.5 2.5E-13 5.5E-18 116.9 10.9 152 251-416 1-156 (157)
182 cd01886 EF-G Elongation factor 99.5 2.2E-13 4.8E-18 135.1 11.9 125 248-393 1-145 (270)
183 PRK12317 elongation factor 1-a 99.5 2.1E-13 4.6E-18 143.3 11.7 144 247-410 7-195 (425)
184 KOG1487 GTP-binding protein DR 99.5 7.6E-14 1.7E-18 134.7 6.9 123 246-378 59-181 (358)
185 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 9.1E-13 2E-17 122.5 13.8 160 247-421 23-186 (221)
186 KOG0092 GTPase Rab5/YPT51 and 99.5 2.8E-13 6.1E-18 125.6 10.2 155 248-423 7-170 (200)
187 KOG0087 GTPase Rab11/YPT3, sma 99.5 2.5E-13 5.4E-18 127.6 9.9 154 246-419 14-175 (222)
188 CHL00071 tufA elongation facto 99.5 3.8E-13 8.2E-18 140.9 12.2 131 246-397 12-163 (409)
189 KOG0098 GTPase Rab2, small G p 99.5 2.9E-13 6.3E-18 124.9 9.8 156 247-419 7-167 (216)
190 KOG0394 Ras-related GTPase [Ge 99.5 2.4E-13 5.2E-18 125.2 9.2 156 246-419 9-177 (210)
191 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 2.8E-13 6.1E-18 127.4 9.6 124 248-381 2-131 (196)
192 cd01888 eIF2_gamma eIF2-gamma 99.4 9.6E-13 2.1E-17 124.7 13.3 107 301-419 83-198 (203)
193 KOG0080 GTPase Rab18, small G 99.4 2.9E-13 6.3E-18 122.1 8.9 162 247-424 12-178 (209)
194 KOG0095 GTPase Rab30, small G 99.4 4.8E-13 1E-17 119.3 9.9 159 244-419 5-168 (213)
195 TIGR01393 lepA GTP-binding pro 99.4 6.7E-13 1.5E-17 144.9 13.3 159 246-420 3-180 (595)
196 PF00025 Arf: ADP-ribosylation 99.4 5.8E-13 1.3E-17 123.4 10.7 151 247-417 15-173 (175)
197 cd04168 TetM_like Tet(M)-like 99.4 8.9E-13 1.9E-17 128.4 12.1 126 248-394 1-146 (237)
198 TIGR00491 aIF-2 translation in 99.4 6.1E-13 1.3E-17 144.7 12.0 120 248-380 6-135 (590)
199 TIGR00475 selB selenocysteine- 99.4 1.2E-12 2.6E-17 142.6 14.0 151 248-419 2-165 (581)
200 PRK05306 infB translation init 99.4 1.3E-12 2.8E-17 145.8 14.3 151 246-417 290-449 (787)
201 PF08477 Miro: Miro-like prote 99.4 1.2E-13 2.6E-18 118.4 4.2 115 248-377 1-119 (119)
202 cd01883 EF1_alpha Eukaryotic e 99.4 7.8E-13 1.7E-17 126.9 10.3 113 248-380 1-151 (219)
203 CHL00189 infB translation init 99.4 9.5E-13 2E-17 145.8 11.8 156 246-418 244-408 (742)
204 KOG0079 GTP-binding protein H- 99.4 9.7E-13 2.1E-17 117.3 9.4 159 246-421 8-170 (198)
205 cd04169 RF3 RF3 subfamily. Pe 99.4 1.4E-12 3.1E-17 129.2 10.9 126 246-392 2-151 (267)
206 cd01885 EF2 EF2 (for archaea a 99.4 2.8E-12 6E-17 123.8 12.4 119 248-379 2-138 (222)
207 TIGR00484 EF-G translation elo 99.4 1.8E-12 3.9E-17 144.1 12.5 128 245-393 9-156 (689)
208 PLN03127 Elongation factor Tu; 99.4 1.6E-12 3.5E-17 137.5 11.4 120 246-386 61-197 (447)
209 cd04170 EF-G_bact Elongation f 99.4 2.1E-12 4.6E-17 127.5 11.4 124 248-392 1-144 (268)
210 cd04102 RabL3 RabL3 (Rab-like3 99.4 4.3E-12 9.2E-17 120.8 13.0 125 248-381 2-144 (202)
211 cd04167 Snu114p Snu114p subfam 99.4 3.7E-12 8E-17 121.4 12.3 117 247-379 1-136 (213)
212 PLN00023 GTP-binding protein; 99.4 4.6E-12 9.9E-17 128.0 13.0 127 247-381 22-166 (334)
213 cd04105 SR_beta Signal recogni 99.4 2.2E-12 4.9E-17 122.5 10.2 120 248-381 2-124 (203)
214 PRK00007 elongation factor G; 99.4 2.7E-12 5.7E-17 142.8 11.6 128 245-393 9-156 (693)
215 PRK12739 elongation factor G; 99.4 2.5E-12 5.4E-17 143.0 10.9 127 245-392 7-153 (691)
216 PRK10512 selenocysteinyl-tRNA- 99.4 8.2E-12 1.8E-16 136.8 14.5 151 249-419 3-165 (614)
217 PTZ00132 GTP-binding nuclear p 99.3 6.3E-12 1.4E-16 119.6 11.9 158 247-421 10-169 (215)
218 KOG0073 GTP-binding ADP-ribosy 99.3 4.5E-12 9.8E-17 114.8 9.9 152 248-419 18-177 (185)
219 TIGR01394 TypA_BipA GTP-bindin 99.3 8.1E-12 1.8E-16 136.3 13.5 128 246-394 1-146 (594)
220 PRK05433 GTP-binding protein L 99.3 7.2E-12 1.6E-16 137.0 13.1 160 245-420 6-184 (600)
221 PRK12735 elongation factor Tu; 99.3 5.4E-12 1.2E-16 131.7 11.5 130 246-396 12-162 (396)
222 PRK12736 elongation factor Tu; 99.3 5.4E-12 1.2E-16 131.6 11.3 131 246-397 12-163 (394)
223 PRK10218 GTP-binding protein; 99.3 1.5E-11 3.3E-16 134.3 15.0 128 246-394 5-150 (607)
224 PRK04004 translation initiatio 99.3 6.4E-12 1.4E-16 137.0 11.9 119 247-379 7-136 (586)
225 KOG0091 GTPase Rab39, small G 99.3 4.4E-12 9.5E-17 114.8 8.8 151 250-419 12-172 (213)
226 PRK00049 elongation factor Tu; 99.3 6.6E-12 1.4E-16 131.0 11.3 131 246-397 12-163 (396)
227 KOG0410 Predicted GTP binding 99.3 1.6E-12 3.4E-17 129.2 5.6 156 246-417 178-338 (410)
228 PLN03126 Elongation factor Tu; 99.3 7.9E-12 1.7E-16 133.2 11.4 131 246-397 81-232 (478)
229 TIGR00483 EF-1_alpha translati 99.3 7.6E-12 1.6E-16 131.7 11.0 145 246-410 7-197 (426)
230 TIGR00485 EF-Tu translation el 99.3 9.9E-12 2.1E-16 129.6 11.5 130 246-396 12-162 (394)
231 cd04165 GTPBP1_like GTPBP1-lik 99.3 3.6E-11 7.8E-16 116.2 14.5 68 301-381 84-153 (224)
232 KOG0093 GTPase Rab3, small G p 99.3 1E-11 2.2E-16 110.7 9.8 155 247-416 22-179 (193)
233 PRK05506 bifunctional sulfate 99.3 6.7E-12 1.4E-16 138.3 9.1 143 247-409 25-210 (632)
234 PRK09866 hypothetical protein; 99.3 4.1E-11 9E-16 129.1 14.5 113 301-419 230-352 (741)
235 KOG0395 Ras-related GTPase [Ge 99.3 1.5E-11 3.2E-16 116.6 9.9 158 248-421 5-166 (196)
236 PF09439 SRPRB: Signal recogni 99.3 1.1E-11 2.4E-16 115.8 8.3 118 248-381 5-127 (181)
237 TIGR03680 eif2g_arch translati 99.3 2.8E-11 6.2E-16 126.7 11.9 160 248-419 6-195 (406)
238 PRK05124 cysN sulfate adenylyl 99.3 1.7E-11 3.8E-16 130.6 10.3 145 246-410 27-215 (474)
239 PF10662 PduV-EutP: Ethanolami 99.2 5E-11 1.1E-15 107.2 10.8 137 247-415 2-141 (143)
240 cd01853 Toc34_like Toc34-like 99.2 2.1E-11 4.5E-16 119.7 8.3 125 247-380 32-163 (249)
241 PRK00741 prfC peptide chain re 99.2 4.1E-11 8.9E-16 129.2 11.3 128 245-393 9-160 (526)
242 cd04104 p47_IIGP_like p47 (47- 99.2 5.9E-11 1.3E-15 112.0 10.9 112 248-380 3-121 (197)
243 COG1100 GTPase SAR1 and relate 99.2 5E-11 1.1E-15 112.9 10.0 156 247-419 6-184 (219)
244 TIGR02034 CysN sulfate adenyly 99.2 4.3E-11 9.4E-16 125.3 10.4 142 248-409 2-186 (406)
245 TIGR00503 prfC peptide chain r 99.2 7.1E-11 1.5E-15 127.4 12.1 128 245-393 10-161 (527)
246 COG3596 Predicted GTPase [Gene 99.2 6.7E-11 1.5E-15 115.8 10.7 121 248-380 41-162 (296)
247 PF00350 Dynamin_N: Dynamin fa 99.2 3.4E-11 7.3E-16 109.5 8.1 68 301-376 101-168 (168)
248 TIGR02836 spore_IV_A stage IV 99.2 2.2E-10 4.7E-15 118.3 14.3 159 248-416 19-229 (492)
249 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.1E-10 2.3E-15 112.9 11.0 107 248-383 41-150 (225)
250 PRK04000 translation initiatio 99.2 1.3E-10 2.7E-15 122.0 11.5 161 247-419 10-200 (411)
251 PRK13351 elongation factor G; 99.2 1E-10 2.2E-15 130.1 11.4 127 246-393 8-154 (687)
252 KOG0086 GTPase Rab4, small G p 99.2 1.4E-10 3.1E-15 104.0 9.5 152 246-417 9-168 (214)
253 KOG0070 GTP-binding ADP-ribosy 99.2 7E-11 1.5E-15 109.2 7.7 150 248-419 19-177 (181)
254 TIGR00991 3a0901s02IAP34 GTP-b 99.2 9.9E-11 2.1E-15 117.7 9.2 125 247-380 39-167 (313)
255 cd01850 CDC_Septin CDC/Septin. 99.1 5.2E-10 1.1E-14 111.4 13.7 138 248-398 6-178 (276)
256 KOG0075 GTP-binding ADP-ribosy 99.1 4.1E-11 8.9E-16 106.9 4.3 148 248-416 22-178 (186)
257 KOG3883 Ras family small GTPas 99.1 8.6E-10 1.9E-14 99.1 12.1 164 248-424 11-179 (198)
258 PTZ00416 elongation factor 2; 99.1 3.9E-10 8.5E-15 127.8 12.5 123 244-379 17-157 (836)
259 PLN00116 translation elongatio 99.1 4E-10 8.7E-15 127.9 10.2 123 244-379 17-163 (843)
260 PTZ00141 elongation factor 1- 99.1 6.8E-10 1.5E-14 117.7 11.2 141 247-408 8-201 (446)
261 smart00053 DYNc Dynamin, GTPas 99.1 1.2E-09 2.6E-14 106.6 12.0 76 301-381 125-207 (240)
262 KOG0088 GTPase Rab21, small G 99.1 5.4E-10 1.2E-14 100.9 8.5 155 248-419 15-174 (218)
263 KOG1532 GTPase XAB1, interacts 99.1 1.7E-10 3.7E-15 112.6 5.6 125 302-454 117-247 (366)
264 COG2229 Predicted GTPase [Gene 99.1 2.2E-09 4.7E-14 99.4 12.4 150 247-416 11-174 (187)
265 PRK12740 elongation factor G; 99.0 1E-09 2.2E-14 121.8 11.2 109 252-381 1-127 (668)
266 KOG0083 GTPase Rab26/Rab37, sm 99.0 1E-10 2.3E-15 102.7 2.4 155 251-421 2-161 (192)
267 TIGR00490 aEF-2 translation el 99.0 7.9E-10 1.7E-14 123.6 9.7 119 245-380 18-152 (720)
268 KOG0074 GTP-binding ADP-ribosy 99.0 3.6E-10 7.8E-15 100.3 5.2 149 247-416 18-175 (185)
269 KOG1954 Endocytosis/signaling 99.0 1.9E-09 4.2E-14 108.9 10.7 141 249-394 61-239 (532)
270 PRK13768 GTPase; Provisional 99.0 1.3E-09 2.8E-14 107.3 9.3 79 301-383 97-179 (253)
271 KOG0090 Signal recognition par 99.0 3.1E-09 6.8E-14 100.5 10.0 117 247-381 39-160 (238)
272 KOG0097 GTPase Rab14, small G 99.0 1.6E-09 3.4E-14 96.2 7.4 155 248-418 13-171 (215)
273 PRK07560 elongation factor EF- 99.0 2.2E-09 4.8E-14 120.3 10.1 119 245-380 19-153 (731)
274 cd01849 YlqF_related_GTPase Yl 98.9 8.3E-10 1.8E-14 100.1 5.0 111 190-311 29-155 (155)
275 KOG0071 GTP-binding ADP-ribosy 98.9 5.2E-09 1.1E-13 92.9 9.2 148 248-417 19-175 (180)
276 KOG0462 Elongation factor-type 98.9 1.4E-08 3E-13 107.2 13.9 159 244-420 58-235 (650)
277 PTZ00327 eukaryotic translatio 98.9 8.5E-09 1.8E-13 109.6 12.5 161 247-419 35-232 (460)
278 KOG0076 GTP-binding ADP-ribosy 98.9 1.1E-09 2.5E-14 100.3 5.0 154 249-419 20-186 (197)
279 PTZ00099 rab6; Provisional 98.9 5.9E-09 1.3E-13 97.0 9.1 112 301-421 29-143 (176)
280 PLN00043 elongation factor 1-a 98.9 5E-09 1.1E-13 111.1 9.7 142 247-408 8-201 (447)
281 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 8.8E-09 1.9E-13 100.1 10.2 123 248-382 1-127 (232)
282 PF04548 AIG1: AIG1 family; I 98.9 7.7E-09 1.7E-13 98.9 9.6 124 248-381 2-131 (212)
283 PF03029 ATP_bind_1: Conserved 98.9 1.5E-09 3.3E-14 105.9 4.8 76 302-381 92-171 (238)
284 cd04178 Nucleostemin_like Nucl 98.9 2.1E-09 4.5E-14 99.9 4.9 54 247-311 118-172 (172)
285 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.3E-09 7.1E-14 94.7 5.9 54 248-312 85-139 (141)
286 COG0532 InfB Translation initi 98.8 3.3E-08 7.2E-13 104.5 13.9 151 248-418 7-168 (509)
287 COG0481 LepA Membrane GTPase L 98.8 2.3E-08 4.9E-13 104.1 12.2 160 244-421 7-187 (603)
288 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.9E-09 6.3E-14 96.6 5.0 108 190-311 39-157 (157)
289 TIGR03596 GTPase_YlqF ribosome 98.8 2.4E-09 5.1E-14 106.6 4.5 113 190-314 48-176 (276)
290 COG1161 Predicted GTPases [Gen 98.8 2.4E-09 5.1E-14 109.0 4.4 115 190-315 61-191 (322)
291 KOG0081 GTPase Rab27, small G 98.8 4.2E-09 9E-14 95.3 5.2 158 248-417 11-178 (219)
292 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.1E-09 6.7E-14 106.4 4.9 114 190-315 51-180 (287)
293 COG1217 TypA Predicted membran 98.8 1.5E-08 3.3E-13 105.1 9.4 128 246-394 5-150 (603)
294 TIGR00993 3a0901s04IAP86 chlor 98.8 1.1E-08 2.3E-13 111.1 8.6 124 247-380 119-250 (763)
295 COG0480 FusA Translation elong 98.8 1.9E-08 4.1E-13 111.3 10.7 118 244-381 8-143 (697)
296 KOG1145 Mitochondrial translat 98.8 7.3E-08 1.6E-12 101.8 13.1 148 247-416 154-312 (683)
297 KOG0393 Ras-related small GTPa 98.8 1.8E-08 4E-13 95.1 7.7 156 247-419 5-178 (198)
298 cd01855 YqeH YqeH. YqeH is an 98.7 8.3E-09 1.8E-13 96.5 4.6 103 190-311 61-190 (190)
299 KOG4252 GTP-binding protein [S 98.7 1.1E-08 2.3E-13 94.3 3.9 157 246-420 20-181 (246)
300 KOG0077 Vesicle coat complex C 98.7 7.6E-09 1.7E-13 94.3 2.5 116 247-381 21-136 (193)
301 COG5256 TEF1 Translation elong 98.7 1E-07 2.2E-12 98.2 11.0 126 248-392 9-172 (428)
302 TIGR03597 GTPase_YqeH ribosome 98.7 2.9E-08 6.4E-13 102.5 6.1 166 190-381 90-281 (360)
303 PRK09435 membrane ATPase/prote 98.7 1.5E-07 3.3E-12 96.1 11.1 99 301-419 149-259 (332)
304 PRK12289 GTPase RsgA; Reviewed 98.6 2E-08 4.3E-13 103.4 4.3 101 190-314 120-237 (352)
305 PF05049 IIGP: Interferon-indu 98.6 5.4E-08 1.2E-12 100.4 7.3 111 247-378 36-153 (376)
306 TIGR00750 lao LAO/AO transport 98.6 9.7E-08 2.1E-12 96.2 6.7 99 301-419 127-237 (300)
307 PRK14845 translation initiatio 98.5 6.1E-07 1.3E-11 103.1 13.5 111 257-380 472-592 (1049)
308 PRK12288 GTPase RsgA; Reviewed 98.5 5E-08 1.1E-12 100.3 4.2 101 190-314 150-270 (347)
309 PRK13796 GTPase YqeH; Provisio 98.5 5E-08 1.1E-12 101.0 3.8 105 190-314 96-223 (365)
310 COG4917 EutP Ethanolamine util 98.5 2.8E-07 6.1E-12 80.6 7.2 139 247-417 2-143 (148)
311 cd01859 MJ1464 MJ1464. This f 98.5 1E-07 2.2E-12 86.2 4.6 106 190-311 41-156 (156)
312 COG4108 PrfC Peptide chain rel 98.5 5.2E-07 1.1E-11 93.4 9.9 126 247-393 13-162 (528)
313 TIGR00157 ribosome small subun 98.5 6.8E-08 1.5E-12 94.7 3.1 100 190-314 67-184 (245)
314 KOG1707 Predicted Ras related/ 98.4 7.4E-07 1.6E-11 95.0 9.2 150 248-415 11-170 (625)
315 KOG0468 U5 snRNP-specific prot 98.4 5.1E-07 1.1E-11 97.0 7.8 119 245-379 127-262 (971)
316 cd01856 YlqF YlqF. Proteins o 98.4 2.8E-07 6.1E-12 84.9 5.1 110 190-311 46-170 (171)
317 KOG0458 Elongation factor 1 al 98.4 1.5E-06 3.2E-11 92.7 10.9 81 301-392 255-342 (603)
318 KOG1424 Predicted GTP-binding 98.4 1.6E-07 3.5E-12 98.6 3.3 58 247-315 315-373 (562)
319 COG2895 CysN GTPases - Sulfate 98.4 1.2E-06 2.5E-11 88.8 8.9 80 300-392 85-166 (431)
320 KOG2486 Predicted GTPase [Gene 98.4 8.1E-07 1.8E-11 87.4 7.4 116 247-380 137-262 (320)
321 PRK00098 GTPase RsgA; Reviewed 98.4 2.5E-07 5.4E-12 93.2 3.9 100 190-313 111-228 (298)
322 COG5257 GCD11 Translation init 98.3 3.9E-06 8.5E-11 84.1 10.1 166 247-423 11-205 (415)
323 KOG0461 Selenocysteine-specifi 98.3 1E-05 2.2E-10 81.8 12.7 120 248-381 9-137 (522)
324 cd01851 GBP Guanylate-binding 98.3 4.3E-06 9.3E-11 80.9 9.7 92 246-343 7-103 (224)
325 TIGR00073 hypB hydrogenase acc 98.3 4.2E-06 9.2E-11 79.6 9.4 153 245-417 21-204 (207)
326 PF03308 ArgK: ArgK protein; 98.3 9.3E-07 2E-11 86.7 4.8 98 302-419 123-229 (266)
327 cd03112 CobW_like The function 98.2 1.7E-06 3.6E-11 79.2 6.2 70 301-378 87-158 (158)
328 COG3276 SelB Selenocysteine-sp 98.2 9.8E-06 2.1E-10 84.3 12.1 150 249-419 3-161 (447)
329 PF00735 Septin: Septin; Inte 98.2 2.1E-06 4.5E-11 86.0 6.8 138 248-398 6-177 (281)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1E-06 2.2E-11 88.3 3.4 100 190-313 109-225 (287)
331 KOG0448 Mitofusin 1 GTPase, in 98.2 7.4E-06 1.6E-10 88.8 9.7 134 247-391 110-287 (749)
332 KOG2484 GTPase [General functi 98.2 2E-06 4.3E-11 88.3 5.1 63 243-316 249-312 (435)
333 KOG2423 Nucleolar GTPase [Gene 98.1 9.5E-07 2.1E-11 90.3 2.3 58 247-315 308-366 (572)
334 COG0050 TufB GTPases - transla 98.1 7.2E-06 1.6E-10 81.4 8.1 132 246-398 12-164 (394)
335 KOG4423 GTP-binding protein-li 98.1 7.2E-07 1.6E-11 82.9 0.4 160 247-419 26-193 (229)
336 KOG0072 GTP-binding ADP-ribosy 98.1 5.6E-06 1.2E-10 74.2 5.6 146 250-418 22-177 (182)
337 KOG1144 Translation initiation 98.1 3.2E-05 6.9E-10 84.5 12.1 119 248-379 477-605 (1064)
338 COG1703 ArgK Putative periplas 98.1 9.3E-06 2E-10 81.0 7.4 95 302-416 145-250 (323)
339 COG5192 BMS1 GTP-binding prote 98.1 6E-06 1.3E-10 87.6 6.3 120 248-394 71-191 (1077)
340 TIGR00101 ureG urease accessor 98.0 5.3E-05 1.1E-09 72.0 10.9 96 302-417 93-193 (199)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.6E-05 5.6E-10 69.6 7.6 69 324-397 4-72 (141)
342 KOG0465 Mitochondrial elongati 97.9 1.6E-05 3.6E-10 85.2 6.6 150 245-416 38-205 (721)
343 PRK10463 hydrogenase nickel in 97.9 2.9E-06 6.3E-11 85.0 0.7 53 365-417 229-286 (290)
344 COG5019 CDC3 Septin family pro 97.9 0.00012 2.6E-09 74.9 11.4 139 249-398 26-197 (373)
345 cd01859 MJ1464 MJ1464. This f 97.8 8.2E-05 1.8E-09 67.1 8.8 88 325-419 5-95 (156)
346 PF03193 DUF258: Protein of un 97.8 8.7E-06 1.9E-10 74.9 2.3 55 249-314 38-100 (161)
347 KOG0464 Elongation factor G [T 97.8 1.4E-05 3E-10 82.3 3.5 126 246-392 37-182 (753)
348 cd01858 NGP_1 NGP-1. Autoanti 97.8 0.0001 2.2E-09 66.8 8.5 87 325-416 2-91 (157)
349 KOG1673 Ras GTPases [General f 97.7 7.9E-05 1.7E-09 67.7 7.0 156 247-419 21-185 (205)
350 TIGR00157 ribosome small subun 97.7 0.0002 4.3E-09 70.3 10.3 86 327-417 32-120 (245)
351 KOG3886 GTP-binding protein [S 97.7 3.3E-05 7.1E-10 74.5 4.5 126 247-381 5-131 (295)
352 KOG0096 GTPase Ran/TC4/GSP1 (n 97.7 2.9E-05 6.2E-10 72.6 4.0 158 247-420 11-169 (216)
353 KOG0467 Translation elongation 97.6 0.00016 3.5E-09 79.4 8.8 119 246-377 9-135 (887)
354 KOG2485 Conserved ATP/GTP bind 97.6 5.7E-05 1.2E-09 75.7 4.8 63 248-318 145-213 (335)
355 cd01855 YqeH YqeH. YqeH is an 97.6 0.00012 2.7E-09 68.2 6.8 89 323-419 26-124 (190)
356 cd01856 YlqF YlqF. Proteins o 97.6 0.00017 3.6E-09 66.5 7.2 86 324-418 12-99 (171)
357 TIGR01425 SRP54_euk signal rec 97.6 0.00026 5.6E-09 74.8 9.3 69 301-380 183-253 (429)
358 cd03114 ArgK-like The function 97.6 0.00053 1.1E-08 62.1 9.7 57 301-377 92-148 (148)
359 TIGR03596 GTPase_YlqF ribosome 97.5 0.00026 5.7E-09 70.5 7.6 86 324-418 14-101 (276)
360 PRK01889 GTPase RsgA; Reviewed 97.5 4.8E-05 1E-09 78.6 2.5 70 190-271 142-220 (356)
361 cd03110 Fer4_NifH_child This p 97.5 0.0013 2.9E-08 60.5 11.7 81 301-398 93-173 (179)
362 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00016 3.4E-09 67.3 5.5 85 301-395 85-170 (178)
363 KOG0460 Mitochondrial translat 97.5 0.00046 1E-08 70.0 9.0 132 246-398 54-206 (449)
364 PRK00098 GTPase RsgA; Reviewed 97.5 0.00075 1.6E-08 68.1 10.5 83 329-416 78-163 (298)
365 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00043 9.4E-09 52.7 6.4 48 325-377 9-58 (58)
366 COG1162 Predicted GTPases [Gen 97.4 8.8E-05 1.9E-09 74.5 3.4 54 249-313 167-228 (301)
367 KOG2655 Septin family protein 97.4 0.00095 2.1E-08 68.7 10.8 137 250-397 25-192 (366)
368 COG0523 Putative GTPases (G3E 97.4 0.00098 2.1E-08 68.1 10.6 87 302-397 86-175 (323)
369 PRK09563 rbgA GTPase YlqF; Rev 97.4 0.00033 7.1E-09 70.2 6.8 95 307-416 6-102 (287)
370 PRK10416 signal recognition pa 97.4 0.00085 1.8E-08 68.4 9.9 96 301-408 197-298 (318)
371 KOG1547 Septin CDC10 and relat 97.4 0.0013 2.8E-08 64.0 10.3 142 248-401 48-222 (336)
372 cd01849 YlqF_related_GTPase Yl 97.4 0.0011 2.5E-08 59.8 9.5 79 333-417 1-82 (155)
373 TIGR03348 VI_IcmF type VI secr 97.3 0.00034 7.5E-09 82.6 7.3 133 251-389 116-267 (1169)
374 TIGR02475 CobW cobalamin biosy 97.3 0.0012 2.6E-08 68.0 9.9 84 302-394 94-200 (341)
375 PRK12289 GTPase RsgA; Reviewed 97.2 0.0015 3.3E-08 67.5 9.5 84 327-416 85-171 (352)
376 TIGR00064 ftsY signal recognit 97.1 0.0024 5.1E-08 63.8 9.7 94 301-408 155-256 (272)
377 KOG1707 Predicted Ras related/ 97.1 0.0027 5.8E-08 68.4 10.4 153 250-422 429-585 (625)
378 PRK12727 flagellar biosynthesi 97.1 0.0011 2.5E-08 71.5 7.7 94 301-408 429-523 (559)
379 PRK14722 flhF flagellar biosyn 97.1 0.00092 2E-08 69.5 6.8 22 248-269 139-160 (374)
380 KOG0469 Elongation factor 2 [T 97.1 0.0011 2.3E-08 70.2 6.8 121 245-378 18-162 (842)
381 cd03115 SRP The signal recogni 97.0 0.0027 5.8E-08 58.3 8.5 71 301-381 83-154 (173)
382 COG0378 HypB Ni2+-binding GTPa 97.0 0.0018 3.9E-08 61.3 7.3 74 334-417 120-198 (202)
383 KOG1143 Predicted translation 97.0 0.002 4.4E-08 66.1 8.0 139 248-399 169-339 (591)
384 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.0029 6.3E-08 63.5 8.8 82 329-416 76-160 (287)
385 PRK11537 putative GTP-binding 97.0 0.002 4.3E-08 65.8 7.5 83 302-395 92-176 (318)
386 PRK05703 flhF flagellar biosyn 96.9 0.0021 4.6E-08 68.0 7.6 101 301-412 300-400 (424)
387 COG5258 GTPBP1 GTPase [General 96.9 0.0029 6.2E-08 65.3 7.8 141 248-401 119-293 (527)
388 cd00066 G-alpha G protein alph 96.9 0.0016 3.4E-08 66.3 5.9 72 301-380 161-242 (317)
389 cd02038 FleN-like FleN is a me 96.8 0.0052 1.1E-07 54.7 7.8 65 302-379 46-110 (139)
390 KOG0447 Dynamin-like GTP bindi 96.8 0.0063 1.4E-07 65.1 9.4 130 246-381 308-494 (980)
391 PF00448 SRP54: SRP54-type pro 96.8 0.0019 4E-08 61.4 5.0 95 302-408 85-179 (196)
392 KOG1533 Predicted GTPase [Gene 96.7 0.0011 2.3E-08 64.4 2.9 78 301-381 97-178 (290)
393 smart00275 G_alpha G protein a 96.7 0.0039 8.4E-08 64.2 7.0 71 302-380 185-265 (342)
394 cd04178 Nucleostemin_like Nucl 96.7 0.0041 8.9E-08 57.8 6.5 58 333-395 1-58 (172)
395 COG3523 IcmF Type VI protein s 96.7 0.0048 1E-07 72.1 8.4 133 251-389 130-280 (1188)
396 PRK14721 flhF flagellar biosyn 96.7 0.0077 1.7E-07 63.6 9.3 94 301-408 270-365 (420)
397 smart00010 small_GTPase Small 96.7 0.0061 1.3E-07 51.6 7.1 48 329-380 44-91 (124)
398 KOG2484 GTPase [General functi 96.6 0.0042 9.1E-08 64.3 6.4 71 321-396 136-206 (435)
399 cd02036 MinD Bacterial cell di 96.6 0.017 3.7E-07 52.5 10.0 65 302-380 64-128 (179)
400 KOG1534 Putative transcription 96.6 0.0014 3.1E-08 62.6 2.7 78 300-381 97-179 (273)
401 PRK11889 flhF flagellar biosyn 96.5 0.0065 1.4E-07 63.7 7.5 94 302-410 322-418 (436)
402 PRK01889 GTPase RsgA; Reviewed 96.5 0.014 2.9E-07 60.6 9.6 81 329-416 110-193 (356)
403 PRK14974 cell division protein 96.5 0.016 3.4E-07 59.6 9.9 93 301-408 223-318 (336)
404 PRK12726 flagellar biosynthesi 96.4 0.0031 6.8E-08 65.7 4.3 69 301-381 286-357 (407)
405 PRK12288 GTPase RsgA; Reviewed 96.3 0.027 5.8E-07 58.2 10.6 83 330-417 119-205 (347)
406 PRK13796 GTPase YqeH; Provisio 96.3 0.011 2.3E-07 61.6 7.6 86 325-418 62-157 (365)
407 PRK12724 flagellar biosynthesi 96.3 0.0035 7.5E-08 66.1 3.7 95 301-406 300-396 (432)
408 cd03111 CpaE_like This protein 96.2 0.029 6.2E-07 47.7 8.3 100 253-375 7-106 (106)
409 PRK14723 flhF flagellar biosyn 96.2 0.0043 9.4E-08 69.8 4.0 73 301-381 264-338 (767)
410 PRK12723 flagellar biosynthesi 96.1 0.023 4.9E-07 59.6 8.9 95 301-408 255-351 (388)
411 KOG0463 GTP-binding protein GP 96.1 0.01 2.2E-07 61.1 5.9 85 302-397 220-307 (641)
412 KOG3859 Septins (P-loop GTPase 96.1 0.021 4.5E-07 56.9 7.7 123 248-383 44-193 (406)
413 cd00071 GMPK Guanosine monopho 96.1 0.0043 9.2E-08 55.4 2.7 54 249-312 2-57 (137)
414 TIGR03597 GTPase_YqeH ribosome 96.1 0.013 2.9E-07 60.6 6.8 81 329-417 61-150 (360)
415 PF05783 DLIC: Dynein light in 96.0 0.062 1.4E-06 57.7 11.8 54 366-419 196-263 (472)
416 COG1419 FlhF Flagellar GTP-bin 96.0 0.028 6.1E-07 58.8 8.8 148 248-410 205-379 (407)
417 KOG1424 Predicted GTP-binding 96.0 0.013 2.8E-07 62.6 6.3 71 323-400 166-238 (562)
418 KOG0466 Translation initiation 96.0 0.0074 1.6E-07 60.6 4.2 105 301-420 125-241 (466)
419 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.029 6.2E-07 44.9 7.1 71 249-345 2-72 (99)
420 PRK06995 flhF flagellar biosyn 95.9 0.025 5.4E-07 60.9 8.2 95 302-408 336-430 (484)
421 PRK14737 gmk guanylate kinase; 95.9 0.0073 1.6E-07 56.8 3.7 42 249-290 7-49 (186)
422 KOG3905 Dynein light intermedi 95.9 0.083 1.8E-06 53.8 11.0 53 365-417 221-287 (473)
423 TIGR03263 guanyl_kin guanylate 95.8 0.012 2.6E-07 54.1 4.4 40 249-288 4-44 (180)
424 PRK00771 signal recognition pa 95.7 0.027 5.9E-07 59.9 7.6 68 302-380 177-246 (437)
425 PRK13695 putative NTPase; Prov 95.7 0.033 7.2E-07 51.2 7.2 22 248-269 2-23 (174)
426 PRK06731 flhF flagellar biosyn 95.6 0.02 4.4E-07 57.1 5.8 97 301-412 155-254 (270)
427 PRK10867 signal recognition pa 95.5 0.03 6.5E-07 59.5 6.9 68 301-380 184-254 (433)
428 PF07015 VirC1: VirC1 protein; 95.5 0.052 1.1E-06 52.9 7.9 103 302-413 85-187 (231)
429 PF00004 AAA: ATPase family as 95.3 0.017 3.7E-07 49.5 3.6 20 250-269 2-21 (132)
430 cd02042 ParA ParA and ParB of 95.2 0.053 1.1E-06 45.2 6.3 70 250-343 3-73 (104)
431 COG0194 Gmk Guanylate kinase [ 95.1 0.012 2.7E-07 55.3 2.3 40 250-290 8-48 (191)
432 KOG3887 Predicted small GTPase 95.0 0.064 1.4E-06 52.5 6.7 138 248-399 29-175 (347)
433 PF09547 Spore_IV_A: Stage IV 94.9 0.37 8E-06 51.0 12.5 157 249-417 20-230 (492)
434 PRK14738 gmk guanylate kinase; 94.7 0.029 6.3E-07 53.4 3.5 41 249-289 16-57 (206)
435 PRK00300 gmk guanylate kinase; 94.6 0.033 7.1E-07 52.3 3.6 40 249-288 8-48 (205)
436 TIGR00959 ffh signal recogniti 94.4 0.15 3.2E-06 54.2 8.5 68 302-380 184-253 (428)
437 COG1161 Predicted GTPases [Gen 94.0 0.082 1.8E-06 54.0 5.4 78 303-395 12-89 (322)
438 cd00009 AAA The AAA+ (ATPases 94.0 0.14 3.1E-06 43.5 6.1 21 249-269 22-42 (151)
439 PF00005 ABC_tran: ABC transpo 93.8 0.032 6.9E-07 48.7 1.7 23 248-270 13-35 (137)
440 PF13207 AAA_17: AAA domain; P 93.8 0.033 7.2E-07 47.5 1.7 21 249-269 2-22 (121)
441 COG1116 TauB ABC-type nitrate/ 93.8 0.036 7.8E-07 54.4 2.1 22 249-270 32-53 (248)
442 KOG2743 Cobalamin synthesis pr 93.7 0.19 4E-06 50.8 7.0 84 302-395 147-239 (391)
443 PF00625 Guanylate_kin: Guanyl 93.6 0.038 8.2E-07 51.3 1.9 42 249-290 5-48 (183)
444 COG3640 CooC CO dehydrogenase 93.6 0.18 3.8E-06 49.3 6.5 63 301-379 134-198 (255)
445 KOG0780 Signal recognition par 93.3 0.041 9E-07 57.1 1.7 44 302-348 185-230 (483)
446 PRK13849 putative crown gall t 92.9 0.35 7.6E-06 47.0 7.5 64 302-377 85-151 (231)
447 KOG4181 Uncharacterized conser 92.8 0.37 8E-06 49.6 7.6 23 248-270 190-212 (491)
448 cd02019 NK Nucleoside/nucleoti 92.8 0.07 1.5E-06 41.7 2.0 21 249-269 2-22 (69)
449 COG3840 ThiQ ABC-type thiamine 92.7 0.063 1.4E-06 50.8 1.9 23 248-270 27-49 (231)
450 COG1136 SalX ABC-type antimicr 92.7 0.067 1.5E-06 52.0 2.1 22 249-270 34-55 (226)
451 cd03225 ABC_cobalt_CbiO_domain 92.6 0.071 1.5E-06 50.4 2.1 23 248-270 29-51 (211)
452 PF00503 G-alpha: G-protein al 92.6 0.084 1.8E-06 55.1 2.8 70 302-380 237-317 (389)
453 KOG0446 Vacuolar sorting prote 92.5 0.059 1.3E-06 60.1 1.7 24 246-269 29-52 (657)
454 KOG0082 G-protein alpha subuni 92.5 0.088 1.9E-06 54.4 2.8 74 301-381 195-277 (354)
455 cd03261 ABC_Org_Solvent_Resist 92.4 0.075 1.6E-06 51.2 2.1 23 248-270 28-50 (235)
456 TIGR01166 cbiO cobalt transpor 92.4 0.076 1.6E-06 49.4 2.1 23 248-270 20-42 (190)
457 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.4 0.076 1.6E-06 50.4 2.1 23 248-270 32-54 (218)
458 PF13521 AAA_28: AAA domain; P 92.4 0.059 1.3E-06 48.9 1.3 22 248-269 1-22 (163)
459 cd03264 ABC_drug_resistance_li 92.4 0.077 1.7E-06 50.2 2.1 23 248-270 27-49 (211)
460 COG1134 TagH ABC-type polysacc 92.4 0.073 1.6E-06 52.2 2.0 24 247-270 54-77 (249)
461 smart00072 GuKc Guanylate kina 92.3 0.12 2.6E-06 48.1 3.4 41 249-289 5-47 (184)
462 TIGR00960 3a0501s02 Type II (G 92.3 0.08 1.7E-06 50.2 2.1 23 248-270 31-53 (216)
463 PF13555 AAA_29: P-loop contai 92.3 0.096 2.1E-06 40.7 2.1 19 249-267 26-44 (62)
464 cd02023 UMPK Uridine monophosp 92.3 0.078 1.7E-06 49.7 2.0 21 249-269 2-22 (198)
465 TIGR02673 FtsE cell division A 92.1 0.086 1.9E-06 49.9 2.1 23 248-270 30-52 (214)
466 PRK07261 topology modulation p 92.1 0.082 1.8E-06 48.8 1.9 22 248-269 2-23 (171)
467 cd03263 ABC_subfamily_A The AB 92.1 0.088 1.9E-06 50.0 2.1 23 248-270 30-52 (220)
468 TIGR03608 L_ocin_972_ABC putat 92.1 0.09 1.9E-06 49.4 2.2 23 248-270 26-48 (206)
469 cd03265 ABC_DrrA DrrA is the A 92.1 0.09 1.9E-06 50.1 2.2 23 248-270 28-50 (220)
470 TIGR00235 udk uridine kinase. 92.0 0.085 1.8E-06 50.0 2.0 21 249-269 9-29 (207)
471 cd03226 ABC_cobalt_CbiO_domain 92.0 0.09 2E-06 49.5 2.1 23 248-270 28-50 (205)
472 cd03269 ABC_putative_ATPase Th 92.0 0.093 2E-06 49.6 2.2 22 249-270 29-50 (210)
473 cd03222 ABC_RNaseL_inhibitor T 92.0 0.088 1.9E-06 49.2 1.9 23 248-270 27-49 (177)
474 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.9 0.093 2E-06 47.0 2.0 23 248-270 28-50 (144)
475 PRK13541 cytochrome c biogenes 91.9 0.095 2.1E-06 49.1 2.1 23 248-270 28-50 (195)
476 COG4559 ABC-type hemin transpo 91.9 0.093 2E-06 50.7 2.0 22 249-270 30-51 (259)
477 cd03260 ABC_PstB_phosphate_tra 91.9 0.094 2E-06 50.1 2.1 23 248-270 28-50 (227)
478 cd03257 ABC_NikE_OppD_transpor 91.8 0.096 2.1E-06 49.9 2.1 23 248-270 33-55 (228)
479 cd03259 ABC_Carb_Solutes_like 91.8 0.098 2.1E-06 49.5 2.1 23 248-270 28-50 (213)
480 cd03292 ABC_FtsE_transporter F 91.8 0.098 2.1E-06 49.4 2.1 23 248-270 29-51 (214)
481 cd03218 ABC_YhbG The ABC trans 91.8 0.098 2.1E-06 50.1 2.2 23 248-270 28-50 (232)
482 cd03293 ABC_NrtD_SsuB_transpor 91.8 0.098 2.1E-06 49.8 2.1 23 248-270 32-54 (220)
483 cd03224 ABC_TM1139_LivF_branch 91.8 0.096 2.1E-06 49.8 2.1 23 248-270 28-50 (222)
484 PF13238 AAA_18: AAA domain; P 91.8 0.099 2.1E-06 44.5 1.9 21 249-269 1-21 (129)
485 cd03229 ABC_Class3 This class 91.8 0.1 2.2E-06 48.1 2.2 23 248-270 28-50 (178)
486 cd03258 ABC_MetN_methionine_tr 91.7 0.1 2.2E-06 50.1 2.1 24 248-271 33-56 (233)
487 cd03301 ABC_MalK_N The N-termi 91.7 0.1 2.2E-06 49.3 2.2 23 248-270 28-50 (213)
488 TIGR02211 LolD_lipo_ex lipopro 91.7 0.1 2.2E-06 49.6 2.2 23 248-270 33-55 (221)
489 TIGR02315 ABC_phnC phosphonate 91.7 0.1 2.2E-06 50.4 2.1 23 248-270 30-52 (243)
490 TIGR02322 phosphon_PhnN phosph 91.7 0.1 2.2E-06 48.0 2.0 21 249-269 4-24 (179)
491 cd03262 ABC_HisP_GlnQ_permease 91.7 0.1 2.3E-06 49.2 2.1 23 248-270 28-50 (213)
492 PF03205 MobB: Molybdopterin g 91.7 0.096 2.1E-06 47.0 1.7 21 249-269 3-23 (140)
493 cd03266 ABC_NatA_sodium_export 91.6 0.11 2.3E-06 49.4 2.1 23 248-270 33-55 (218)
494 PRK14242 phosphate transporter 91.6 0.1 2.3E-06 50.8 2.1 22 248-269 34-55 (253)
495 PF13671 AAA_33: AAA domain; P 91.6 0.1 2.3E-06 45.6 1.9 21 250-270 3-23 (143)
496 PRK10751 molybdopterin-guanine 91.6 0.1 2.2E-06 48.7 1.9 22 248-269 8-29 (173)
497 COG3638 ABC-type phosphate/pho 91.6 0.11 2.3E-06 50.9 2.0 20 249-268 33-52 (258)
498 cd03216 ABC_Carb_Monos_I This 91.6 0.11 2.5E-06 47.3 2.2 23 248-270 28-50 (163)
499 PRK11629 lolD lipoprotein tran 91.5 0.11 2.5E-06 49.9 2.1 23 248-270 37-59 (233)
500 cd03231 ABC_CcmA_heme_exporter 91.4 0.12 2.5E-06 48.8 2.1 23 248-270 28-50 (201)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.9e-79 Score=605.69 Aligned_cols=314 Identities=44% Similarity=0.718 Sum_probs=284.7
Q ss_pred CCceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhh
Q 012884 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (454)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~ 153 (454)
.+|+|+++|+|+||+||||||| |||||| +|+|||||| |||+||||||+||++++||.+
T Consensus 1 m~FvD~~~I~v~aG~GGnG~VS--------------FrREK~----vp~GGPdGG----dGG~GGsV~~~ad~~l~TL~d 58 (369)
T COG0536 1 MKFVDEVKIEVKAGDGGNGCVS--------------FRREKF----VPKGGPDGG----DGGRGGSVIFEADENLNTLID 58 (369)
T ss_pred CCcceEEEEEEEecCCCCeeEE--------------EEhhhc----CccCCCCCC----CCCCCceEEEEEcCCcccHhh
Confidence 4799999999999999999997 899998 899999998 999999999999999999999
Q ss_pred ccccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEecC-CceeccccCcCcceeeecCCCCCCCccc---
Q 012884 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLE--- 229 (454)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~~~-~~~~~dl~~~g~~~i~A~gG~Gg~~~~~--- 229 (454)
|+++++|+|++|+||. +++++|++|+|++|+||+||+|++.+ +++++||.++||++++|+||+||.||..
T Consensus 59 ~r~~~~f~A~~G~~G~------~~~~~G~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks 132 (369)
T COG0536 59 FRYKKHFKAENGENGM------GRNRTGAKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKS 132 (369)
T ss_pred hccceEEEccCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcC
Confidence 9999999999999986 48899999999999999999999976 6899999999999999999999999854
Q ss_pred ----cchhh------hccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccc
Q 012884 230 ----VPENR------RKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKY 299 (454)
Q Consensus 230 ----~~~~~------~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~ 299 (454)
+|+.. +++.+.||||++||||+||+|||||||||+++++++|+|++|||||+.|++|++....
T Consensus 133 ~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~------- 205 (369)
T COG0536 133 SVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG------- 205 (369)
T ss_pred cccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-------
Confidence 44432 3567889999999999999999999999999999999999999999999999998732
Q ss_pred cccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCC---CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 012884 300 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 300 ~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~---~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~ 376 (454)
...|+++|+||+|++||++.+|+.+||+||+||.+++||||++.. ++.++++.++.||+.|++.+.++|.+||+||+
T Consensus 206 ~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKi 285 (369)
T COG0536 206 GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKI 285 (369)
T ss_pred CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEecc
Confidence 357999999999999999999999999999999999999999874 46999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhc-CCc---eecccccccHHHHHHHHHhhcCcc
Q 012884 377 DLPEARDRLQSLTEEILKI-GCD---KVTSETELSSEDAVKSLSTEGGEA 422 (454)
Q Consensus 377 Dl~~~~e~~~~l~~~l~~~-g~~---~~sa~~~~~~~e~~~~l~~~~~~~ 422 (454)
|++.+++.++++.+.+.+. ++. .+|+.+..++.+.+..+...+.+.
T Consensus 286 D~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 286 DLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 9887778888888888764 322 177888888888888777655443
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=8.3e-70 Score=551.95 Aligned_cols=310 Identities=40% Similarity=0.670 Sum_probs=274.6
Q ss_pred CceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 012884 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (454)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (454)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||+++++++||.++
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (335)
T PRK12299 1 KFIDEAKIYVKAGDGGNGCVS--------------FRREKF----IPFGGPDGG----DGGRGGSVILEADENLNTLIDF 58 (335)
T ss_pred CceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence 599999999999999999997 889998 899999998 9999999999999999999999
Q ss_pred cccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEec-CCceeccccCcCcceeeecCCCCCCCccc----
Q 012884 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLE---- 229 (454)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~~-~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~---- 229 (454)
+++++|+|++|+||. +++++|++|+|++|+||+||+|++. ++++++||.+++|++++|+||+||.||..
T Consensus 59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~ 132 (335)
T PRK12299 59 RYKRHFKAENGENGM------GRNRTGKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSS 132 (335)
T ss_pred cCccEEECCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccc
Confidence 999999999999986 4788999999999999999999984 56899999999999999999999999854
Q ss_pred ---cchh------hhccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCccccc
Q 012884 230 ---VPEN------RRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 300 (454)
Q Consensus 230 ---~~~~------~~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~ 300 (454)
.|+. .+++.+.||||++|||||||+||||||||||+|+++++.|++|||||+.|+.+.+.+.. .
T Consensus 133 ~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-------~ 205 (335)
T PRK12299 133 TNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-------Y 205 (335)
T ss_pred cCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-------C
Confidence 3433 23567889999999999999999999999999999999999999999999999997632 2
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.+|++|||||++++++.++++++.|++|+++|+++|||||+++.++.++++.|.++|..|++.+.++|+++|+||+|+.+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 37999999999999999999999999999999999999999987789999999999999987777899999999999986
Q ss_pred hHHHHHH-HHHHHHhc--CCceecccccccHHHHHHHHHhhc
Q 012884 381 ARDRLQS-LTEEILKI--GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~~e~~~~-l~~~l~~~--g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+..++ +....... .+.++++.+..++.+.++.+...+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5443322 22223333 456789999999999999887544
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=2.2e-69 Score=562.41 Aligned_cols=311 Identities=43% Similarity=0.710 Sum_probs=277.2
Q ss_pred CceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 012884 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (454)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (454)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||++|++++||++|
T Consensus 1 ~f~D~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggp~gG----~GG~GG~v~~~~~~~~~tl~~~ 58 (424)
T PRK12297 1 MFIDQAKIYVKAGDGGDGMVS--------------FRREKY----VPKGGPDGG----DGGKGGSVIFVADEGLRTLLDF 58 (424)
T ss_pred CceEEEEEEEEecCCCCceee--------------EEhhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence 599999999999999999997 889998 899999998 9999999999999999999999
Q ss_pred cccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEe-cCCceeccccCcCcceeeecCCCCCCCccc----
Q 012884 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLE---- 229 (454)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~-~~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~---- 229 (454)
+++++|+|++|+||. +++++|++|+|++|+||+||+|++ .++++++||.++|+++++|+||+||+|+..
T Consensus 59 ~~~~~~~a~~G~~g~------~~~~~G~~g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s 132 (424)
T PRK12297 59 RYKRHFKAENGENGM------GKNMHGRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATS 132 (424)
T ss_pred cCccEEEcCCCCCCC------CCCCCCCCCCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCC
Confidence 999999999999986 378899999999999999999998 467899999999999999999999999754
Q ss_pred ---cchh------hhccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCccccc
Q 012884 230 ---VPEN------RRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 300 (454)
Q Consensus 230 ---~~~~------~~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~ 300 (454)
+|+. .+.+.+.||||++|||+|||+||||||||||+|+++++.|++|||||+.|+.+.+.+.. .
T Consensus 133 ~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-------~ 205 (424)
T PRK12297 133 TNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-------G 205 (424)
T ss_pred CCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-------C
Confidence 3332 23467889999999999999999999999999999999999999999999999987642 2
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCC---CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~---~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
.+|+||||||++++++.+.++++.|++|+++|+++|||||+++. ++.+++..|.++|..|++.+.++|++||+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 47999999999999999999999999999999999999999864 778899999999999988778999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCceecccccccHHHHHHHHHhhcCc
Q 012884 378 LPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 378 l~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
+....+.++.+.+.+. ..+..+|+.+..++.+.++.+...+..
T Consensus 286 L~~~~e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 286 LPEAEENLEEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CcCCHHHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8665454555555444 446678999999999999998876643
No 4
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=8.7e-69 Score=564.86 Aligned_cols=312 Identities=40% Similarity=0.648 Sum_probs=277.9
Q ss_pred CCceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhh
Q 012884 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (454)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~ 153 (454)
.+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||++|++++||++
T Consensus 2 ~~fvD~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggpdGG----~GG~GG~v~~~~~~~~~tl~~ 59 (500)
T PRK12296 2 PRFVDRVVLHVKAGDGGNGCAS--------------VHREKF----KPLGGPDGG----NGGRGGSVVLVVDPQVTTLLD 59 (500)
T ss_pred CCcEEEEEEEEEecCCCCccee--------------eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcCchHH
Confidence 4699999999999999999997 889998 799999998 999999999999999999999
Q ss_pred ccccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEecCCceeccccCcCcceeeecCCCCCCCcccc---
Q 012884 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEV--- 230 (454)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~~~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~~--- 230 (454)
|+++++|+|++|+||. +++++|++|+|++|+||+||+|++.++++++||..+|+++++|+||+||.||..+
T Consensus 60 ~~~~~~~~a~~G~~G~------~~~~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~ 133 (500)
T PRK12296 60 FHFRPHRKATNGKPGM------GDNRDGAAGEDLVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASK 133 (500)
T ss_pred hccCceEECCCCCCCC------CCCCCCCCCCceEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCc
Confidence 9999999999999986 3789999999999999999999999999999999999999999999999998643
Q ss_pred ----chh------hhccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCccccc
Q 012884 231 ----PEN------RRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 300 (454)
Q Consensus 231 ----~~~------~~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~ 300 (454)
|.. .+++.+.||||+++||+|||+||||||||||+|+++++.|++|||||++|+.+++.+..
T Consensus 134 ~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~-------- 205 (500)
T PRK12296 134 ARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD-------- 205 (500)
T ss_pred cCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--------
Confidence 332 23567889999999999999999999999999999999999999999999999998642
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCC----CCCHhhHHHHHHHHHhcCC---------CCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNP---------DYLER 367 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~----~~~~~d~~~l~~eL~~~~~---------~~~~k 367 (454)
.+|+||||||++++++.+++++..|++|+++||+||||||++. .++.+++..+.++|..|.+ .+.++
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 3799999999999999989999999999999999999999985 3577889999999998875 45689
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHHHHhcC--CceecccccccHHHHHHHHHhhcCc
Q 012884 368 PFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 368 p~IvV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
|+|||+||+|+++..+..+.+.+.+...+ +..+++.+..++.+.+..+...+..
T Consensus 286 P~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 286 PRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999876555555555665544 4678888999999999888776644
No 5
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=1.4e-67 Score=534.93 Aligned_cols=306 Identities=42% Similarity=0.716 Sum_probs=271.7
Q ss_pred ceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhhcc
Q 012884 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH 155 (454)
Q Consensus 76 f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~~ 155 (454)
|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||+++++++||++++
T Consensus 1 f~D~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~~ 58 (329)
T TIGR02729 1 FVDEAKIFVKAGDGGNGCVS--------------FRREKY----VPKGGPDGG----DGGRGGSVILEADENLNTLLDFR 58 (329)
T ss_pred CeEEEEEEEEecCCCCceee--------------EEeecc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhcc
Confidence 89999999999999999997 889998 899999998 99999999999999999999999
Q ss_pred ccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEec-CCceeccccCcCcceeeecCCCCCCCccc-----
Q 012884 156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLE----- 229 (454)
Q Consensus 156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~~-~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~----- 229 (454)
++++|+|++|+||. +++++|++|+|++|+||+||+|++. ++++++||.++++++++|+||+||.+|..
T Consensus 59 ~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~ 132 (329)
T TIGR02729 59 YQRHFKAENGENGM------GKNRTGKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSST 132 (329)
T ss_pred CCcEEEcCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCcc
Confidence 99999999999986 4788999999999999999999985 56899999999999999999999999754
Q ss_pred --cchh------hhccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccc
Q 012884 230 --VPEN------RRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSS 301 (454)
Q Consensus 230 --~~~~------~~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~ 301 (454)
.|.. .+.+.+.||||++|||++||+||||||||||+|+++++.+++|||||+.|+.+.+.++. ..
T Consensus 133 ~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-------~~ 205 (329)
T TIGR02729 133 NRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-------GR 205 (329)
T ss_pred CCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-------ce
Confidence 3432 23567889999999999999999999999999999999999999999999999997642 14
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCC---CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~---~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
+++||||||++++++.++++++.|++|+++||++|+|+|++.. ++.++++.|.++|..|.+.+.++|++||+||+|+
T Consensus 206 ~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL 285 (329)
T TIGR02729 206 SFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDL 285 (329)
T ss_pred EEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccC
Confidence 7999999999999999889999999999999999999999976 6788999999999998877778999999999999
Q ss_pred CChHHHHHHHHHHHH-hc--CCceecccccccHHHHHHHHHh
Q 012884 379 PEARDRLQSLTEEIL-KI--GCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 379 ~~~~e~~~~l~~~l~-~~--g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
.+..+ .+++.+.+. .. .+.++++....++.+.+..+..
T Consensus 286 ~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 286 LDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred CChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHH
Confidence 87543 344444443 22 3567788889999999988864
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.5e-67 Score=545.08 Aligned_cols=312 Identities=38% Similarity=0.615 Sum_probs=272.7
Q ss_pred CceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 012884 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (454)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (454)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||+++++++||+++
T Consensus 2 ~f~D~~~i~~~~G~GG~g~~~--------------f~r~~~----~~~ggp~gg----~GG~Gg~v~~~~~~~~~~l~~~ 59 (390)
T PRK12298 2 KFVDEAKIRVVAGDGGNGCVS--------------FRREKY----IPKGGPDGG----DGGDGGDVYLEADENLNTLIDY 59 (390)
T ss_pred CceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence 699999999999999999997 889998 899999998 9999999999999999999999
Q ss_pred cccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEe-cCCceeccccCcCcceeeecCCCCCCCccc----
Q 012884 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLE---- 229 (454)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~-~~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~---- 229 (454)
+++++|+|++|+||. +++++|++|+|++|+||+||+|++ .++++++||.++|+++++|+||+||.||..
T Consensus 60 ~~~~~~~a~~G~~g~------~~~~~g~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~ 133 (390)
T PRK12298 60 RFERHFRAERGQNGQ------GRDCTGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSS 133 (390)
T ss_pred cCCceEEcCCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhccC
Confidence 999999999999986 478999999999999999999997 456899999999999999999999999754
Q ss_pred ---cchh------hhccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCccccc
Q 012884 230 ---VPEN------RRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 300 (454)
Q Consensus 230 ---~~~~------~~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~ 300 (454)
.|+. .+.+.+.||||++|||||||+||||||||||+|+++++.+++|||||+.|+.+.+.+.. .
T Consensus 134 ~~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-------~ 206 (390)
T PRK12298 134 VNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-------E 206 (390)
T ss_pred ccCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-------C
Confidence 3332 23456789999999999999999999999999999999899999999999999997642 1
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCC---CCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas---~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
.+|+|+||||++++++.+.+++..|++|+++||++|+|+|++ ..++.+++..|.+++..|.+.+.++|.|+|+||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 369999999999999988889999999999999999999998 45677888899999998887777899999999999
Q ss_pred CCChHHHHHHHHHHHHhc----CCceecccccccHHHHHHHHHhhcCc
Q 012884 378 LPEARDRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 378 l~~~~e~~~~l~~~l~~~----g~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
+....+..+.+.+..... .+..+++.+..++.+.+..+...+..
T Consensus 287 l~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 287 LLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred cCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 986544333333333332 34678999999999999888776643
No 7
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=1e-66 Score=509.50 Aligned_cols=320 Identities=37% Similarity=0.574 Sum_probs=279.1
Q ss_pred CCCCCCCCCCcCCCCCCceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCc
Q 012884 59 RESNSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGG 138 (454)
Q Consensus 59 ~~~~~~~~~~~~~~~~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG 138 (454)
++-.+....++.+....|+|..+|.+++|+||+||+||++. .. .+.|+|||| +||+||
T Consensus 24 ~~L~~k~~~s~~~~sq~fiD~~rv~~kgG~GG~G~ssf~~~--------------~~----~~~g~PdGG----dGG~GG 81 (366)
T KOG1489|consen 24 QELFPKKLKSEHKASQNFIDKRRVRIKGGSGGSGASSFFRG--------------YR----RPRGGPDGG----DGGNGG 81 (366)
T ss_pred cccccccchhhhhhhhhhheeeeEEeeccCCCCccchhhhh--------------cc----cccCCCCCC----CCCCCc
Confidence 44456667888888889999999999999999999986543 32 356899998 999999
Q ss_pred eEEEEec-CCcchhhhccccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEe-cCCceeccccCcCccee
Q 012884 139 DVVIYAD-EGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVL 216 (454)
Q Consensus 139 ~v~~~~~-~~~~~l~~~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~-~~~~~~~dl~~~g~~~i 216 (454)
+||++|. ...++|. +..+.++|++|++++ +.+++|.+|++.+|.||+||+|.+ ..+.+++|+.+.++++|
T Consensus 82 ~V~~~a~~~~~~~l~--~~~s~~~a~~Ge~~~------s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i 153 (366)
T KOG1489|consen 82 HVYFVAKPGAFKQLS--HVGSLIQAPNGENGK------SKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVI 153 (366)
T ss_pred eEEEEeCcccccccc--cCCceEEccCCCcCc------cccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEE
Confidence 9999999 5566776 345789999999986 578999999999999999999998 66789999999999999
Q ss_pred eecCCCCCCCcccc-------chh------hhccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeec
Q 012884 217 VARGGRGGISLLEV-------PEN------RRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 283 (454)
Q Consensus 217 ~A~gG~Gg~~~~~~-------~~~------~~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p 283 (454)
+|+||.||+++..+ |.. .+++.+++|+|.+||||+||+||||||||||+|++++++|++|+|||+.|
T Consensus 154 ~arGG~GG~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P 233 (366)
T KOG1489|consen 154 AARGGEGGKGNKFFLSNENRSPKFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRP 233 (366)
T ss_pred EeecCCCCccceeeccccccCcccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeecc
Confidence 99999999987542 221 23567889999999999999999999999999999999999999999999
Q ss_pred cceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCC---CCHhhHHHHHHHHHhc
Q 012884 284 NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMY 360 (454)
Q Consensus 284 ~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~---~~~~d~~~l~~eL~~~ 360 (454)
++|++.++.. .+++++|+||||++||+++++++.||+|||||+.++||+|.+.. .++++++.|+.||+.|
T Consensus 234 ~iG~v~yddf-------~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y 306 (366)
T KOG1489|consen 234 HIGTVNYDDF-------SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELY 306 (366)
T ss_pred ccceeecccc-------ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 9999988742 36999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcCCceecccccccHHHHHHHH
Q 012884 361 NPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIGCDKVTSETELSSEDAVKSL 415 (454)
Q Consensus 361 ~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g~~~~sa~~~~~~~e~~~~l 415 (454)
...+..+|.+||+||+|++++++. ++++++.++.--+.+.++....++++.+..|
T Consensus 307 ek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~l 362 (366)
T KOG1489|consen 307 EKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGL 362 (366)
T ss_pred hhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHH
Confidence 999999999999999999765444 3677766665557788888888888877654
No 8
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=100.00 E-value=5.7e-36 Score=272.23 Aligned_cols=126 Identities=45% Similarity=0.740 Sum_probs=70.1
Q ss_pred ceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhhcc
Q 012884 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH 155 (454)
Q Consensus 76 f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~~ 155 (454)
|||+++|+|+||+|||||+| |+||+| .++|+|||| +||+||||||++|++++||++++
T Consensus 1 FvD~~~i~v~~G~GG~G~~s--------------f~r~~~----~~~ggp~GG----~GG~GG~V~l~~~~~~~sL~~~~ 58 (156)
T PF01018_consen 1 FVDRVRIKVRGGNGGNGCVS--------------FRREKY----VPKGGPDGG----NGGNGGDVYLVADENVNSLLDLK 58 (156)
T ss_dssp EECEEEEEEE------------------------EEEETT----CCEEEE--------------EEEEE-TT--SSCCCG
T ss_pred CeEEEEEEEEecCCcCCEEe--------------EEeecc----ccCCCCCCC----CCCCCceeEEEecccccchhhcc
Confidence 89999999999999999997 788887 789999998 99999999999999999999999
Q ss_pred ccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEe-cCCceeccccCcCcceeeecCCCCCCCccc
Q 012884 156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLE 229 (454)
Q Consensus 156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~-~~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~ 229 (454)
..++|+|++|++|. +++++|++|+|++|+||+||+|++ .++++++||.++++++++|+||+||.++..
T Consensus 59 ~~~~~~A~~G~~G~------~~~~~G~~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~ 127 (156)
T PF01018_consen 59 NKKHYKAENGENGK------SRNCHGKNGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAH 127 (156)
T ss_dssp TSSEEE-------B------TTTB-------EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGG
T ss_pred eeeeEEcCCCCCCC------CCcccccCCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCcccccc
Confidence 99999999999985 478899999999999999999998 567899999999999999999999999864
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=9.2e-29 Score=254.34 Aligned_cols=243 Identities=20% Similarity=0.197 Sum_probs=181.7
Q ss_pred eeCCceeEEEecCCc----eeccccCcC--cce-eeecCCCCCCCccccchh---hhccccccccccccccccccCCCCC
Q 012884 189 IPVPLGTVVKHKRGK----LFSDLAHPG--DEV-LVARGGRGGISLLEVPEN---RRKRMTTLTTNIMRDDTDKGLPNAG 258 (454)
Q Consensus 189 i~vPvgtvv~~~~~~----~~~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~---~~~~~~~l~~k~~adVglVG~pNaG 258 (454)
.++|+.+||||.|+. ..+|||++| +++ |||.||+|...+.+.... ..++....+.....+||+||+||||
T Consensus 111 ~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvG 190 (444)
T COG1160 111 SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVG 190 (444)
T ss_pred cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCC
Confidence 358999999999884 667899987 666 999999999887652211 1111111111123589999999999
Q ss_pred HHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc----hhhccccccc
Q 012884 259 KSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR----NFLRHLRRTR 333 (454)
Q Consensus 259 KSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~----~fl~~i~~ad 333 (454)
||||+|+|+++++.| ++.|+||+|++...++++ +.+|.++||+|+++..+..+++.. +.+++|++||
T Consensus 191 KSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~--------~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~ 262 (444)
T COG1160 191 KSSLINAILGEERVIVSDIAGTTRDSIDIEFERD--------GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERAD 262 (444)
T ss_pred chHHHHHhccCceEEecCCCCccccceeeeEEEC--------CeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcC
Confidence 999999999999987 999999999999998865 358999999999998887766554 5688999999
Q ss_pred EEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHH----HHHHHhcCC---ceeccccc
Q 012884 334 LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSL----TEEILKIGC---DKVTSETE 405 (454)
Q Consensus 334 vll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-e~~~~l----~~~l~~~g~---~~~sa~~~ 405 (454)
++++|+|++.+.+.+|.+++....+ .+++++||+||||+.+.. ...+++ ...+..+++ ...++.+.
T Consensus 263 vvllviDa~~~~~~qD~~ia~~i~~------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~ 336 (444)
T COG1160 263 VVLLVIDATEGISEQDLRIAGLIEE------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTG 336 (444)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHH------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCC
Confidence 9999999999999999999877666 589999999999997742 233334 344444444 45788899
Q ss_pred ccHHHHHHHHHhhcCcccccccccccccccccccccCCCc
Q 012884 406 LSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 445 (454)
Q Consensus 406 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~led~~~p 445 (454)
.++...++.+.....+.....+++.+..-....+...|+|
T Consensus 337 ~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~ 376 (444)
T COG1160 337 QGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPP 376 (444)
T ss_pred CChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCC
Confidence 9999988887766655555555544443333333444333
No 10
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.90 E-value=3.8e-23 Score=187.38 Aligned_cols=164 Identities=51% Similarity=0.818 Sum_probs=130.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
|+|++||.+|||||||+|+|++.+..+++++++|.+++.+.+.+... ..+.++||||+.+.....+.+...++
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-------~~~~l~DtpG~~~~~~~~~~~~~~~~ 73 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-------RSFVVADIPGLIEGASEGKGLGHRFL 73 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-------CeEEEEecCcccCcccccCCchHHHH
Confidence 58999999999999999999998877788999999999998865421 37999999999765444445667788
Q ss_pred cccccccEEEEEEeCCCC-CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~-~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~---~g~~~~sa 402 (454)
++++.||++++|+|+++. .+.+++..|.+++..+.+....+|+++|+||+|+.+..+..+.+...+.. ..+..+++
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence 888999999999999988 67888888888887765545579999999999997654443444444443 23567888
Q ss_pred cccccHHHHHHHHHh
Q 012884 403 ETELSSEDAVKSLST 417 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~ 417 (454)
....++.+.++.+..
T Consensus 154 ~~~~gi~~l~~~i~~ 168 (170)
T cd01898 154 LTGEGLDELLRKLAE 168 (170)
T ss_pred CCCCCHHHHHHHHHh
Confidence 889999999888763
No 11
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.88 E-value=5.4e-22 Score=196.12 Aligned_cols=163 Identities=34% Similarity=0.529 Sum_probs=130.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
-+.|+|||+||+|||||||+|++++..+++|+|||+.|..|+++|+. -+|+++|+||++++|+.+++.|.++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--------a~IQild~Pgii~gas~g~grG~~v 134 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--------AQIQLLDLPGIIEGASSGRGRGRQV 134 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--------ceEEEEcCcccccCcccCCCCccee
Confidence 47899999999999999999999999999999999999999999874 4899999999999999999999999
Q ss_pred hcccccccEEEEEEeCCCCCCH------------------------------------------hhHHHHHHHHHhcC--
Q 012884 326 LRHLRRTRLLVHVIDAAAENPV------------------------------------------NDYRTVKEELRMYN-- 361 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~------------------------------------------~d~~~l~~eL~~~~-- 361 (454)
+..++.||++++|+|+...... -+...++..|..|.
T Consensus 135 lsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 135 LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred eeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 9999999999999999753210 12222223333222
Q ss_pred --------------------CCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceecccccccHHHHHHHHHhhcC
Q 012884 362 --------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 362 --------------------~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
....-+|.++|+||+|+.. .+.++.+.+.. .....++....++.+..+.|-..++
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 1233689999999999998 34455554443 6677788888888888888887765
No 12
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=5e-22 Score=211.14 Aligned_cols=242 Identities=19% Similarity=0.179 Sum_probs=160.2
Q ss_pred eCCceeEEEecCCc----eeccccCcC--cce-eeecCCCCCCCccccchhh-hc-cccccccccccccccccCCCCCHH
Q 012884 190 PVPLGTVVKHKRGK----LFSDLAHPG--DEV-LVARGGRGGISLLEVPENR-RK-RMTTLTTNIMRDDTDKGLPNAGKS 260 (454)
Q Consensus 190 ~vPvgtvv~~~~~~----~~~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~~-~~-~~~~l~~k~~adVglVG~pNaGKS 260 (454)
++|+.+|+||.|.. ...+++..| +++ +||++|.|...+.+..... .+ .....+.....+|++||.||||||
T Consensus 146 ~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKS 225 (472)
T PRK03003 146 GKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKS 225 (472)
T ss_pred CCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHH
Confidence 57999999998852 223444444 444 9999999977654321100 00 000000112468999999999999
Q ss_pred HHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc----hhhcccccccEE
Q 012884 261 TLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR----NFLRHLRRTRLL 335 (454)
Q Consensus 261 TLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~----~fl~~i~~advl 335 (454)
||+|+|++.+.. ++++++||+++....+.++ +..+.||||||+.+..+...+... ....+++++|++
T Consensus 226 SLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~--------~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~v 297 (472)
T PRK03003 226 SLLNKLAGEERSVVDDVAGTTVDPVDSLIELG--------GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVA 297 (472)
T ss_pred HHHHHHhCCCcccccCCCCccCCcceEEEEEC--------CEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEE
Confidence 999999998764 4889999999988777654 247899999999765432211111 123467899999
Q ss_pred EEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhc---CCceecccccccHH
Q 012884 336 VHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI---GCDKVTSETELSSE 409 (454)
Q Consensus 336 l~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~---g~~~~sa~~~~~~~ 409 (454)
|+|+|++++.+.++.+.+..... .++|+|||+||||+..... ..+++.+.+... .+..+++....++.
T Consensus 298 ilV~Da~~~~s~~~~~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~ 371 (472)
T PRK03003 298 VVLIDASEPISEQDQRVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVD 371 (472)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHH
Confidence 99999999888888876544333 4799999999999976322 122333333332 34578999999999
Q ss_pred HHHHHHHhhcCcccccccccccccccccccccCCCc
Q 012884 410 DAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 445 (454)
Q Consensus 410 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~led~~~p 445 (454)
+.++.+++.........+...+..-....++..|+|
T Consensus 372 ~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p 407 (472)
T PRK03003 372 KLVPALETALESWDTRIPTGRLNAWLGELVAATPPP 407 (472)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Confidence 999999877655444444444333333444455555
No 13
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=7.2e-22 Score=206.72 Aligned_cols=215 Identities=20% Similarity=0.216 Sum_probs=151.5
Q ss_pred eCCceeEEEecCCc----eeccccCcC--cce-eeecCCCCCCCccccchhhh---ccccccccccccccccccCCCCCH
Q 012884 190 PVPLGTVVKHKRGK----LFSDLAHPG--DEV-LVARGGRGGISLLEVPENRR---KRMTTLTTNIMRDDTDKGLPNAGK 259 (454)
Q Consensus 190 ~vPvgtvv~~~~~~----~~~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~~~---~~~~~l~~k~~adVglVG~pNaGK 259 (454)
++|+.+++||.|.. ...+++++| +.+ +||++|.|...+.+...... ......+ ....+|+++|.||+||
T Consensus 107 ~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~-~~~~~v~ivG~~~~GK 185 (429)
T TIGR03594 107 GKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEE-DGPIKIAIIGRPNVGK 185 (429)
T ss_pred CCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCccccccccc-CCceEEEEECCCCCCH
Confidence 47999999998752 445677766 334 89999998765543211100 0000001 1134789999999999
Q ss_pred HHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc----hhhcccccccE
Q 012884 260 STLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR----NFLRHLRRTRL 334 (454)
Q Consensus 260 STLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~----~fl~~i~~adv 334 (454)
|||+|+|++.+..+ .++++||+++....+..+ +..+++|||||+.+..+....+.. ..+++++.||+
T Consensus 186 SsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 186 STLVNALLGEERVIVSDIAGTTRDSIDIPFERN--------GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred HHHHHHHHCCCeeecCCCCCceECcEeEEEEEC--------CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 99999999987654 889999999887777653 247999999999876554333322 24567899999
Q ss_pred EEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH----h---cCCceeccccccc
Q 012884 335 LVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K---IGCDKVTSETELS 407 (454)
Q Consensus 335 ll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~----~---~g~~~~sa~~~~~ 407 (454)
+|+|+|++.+.+.++.+.+..... .++|+++|+||||+.+..+..+++.+.+. . ..+.++++.+..+
T Consensus 258 ~ilV~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~ 331 (429)
T TIGR03594 258 VLLVLDATEGITEQDLRIAGLILE------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQG 331 (429)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCC
Confidence 999999999888888776544333 37999999999999833333444444433 2 2456789999999
Q ss_pred HHHHHHHHHhhc
Q 012884 408 SEDAVKSLSTEG 419 (454)
Q Consensus 408 ~~e~~~~l~~~~ 419 (454)
+.+.+..+....
T Consensus 332 v~~l~~~i~~~~ 343 (429)
T TIGR03594 332 VDKLLDAIDEVY 343 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999988877544
No 14
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.9e-21 Score=196.56 Aligned_cols=111 Identities=36% Similarity=0.602 Sum_probs=90.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC----------cccccccEEEecCCCCccccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----------AEKYSSEATLADLPGLIEGAH 316 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~----------~~~~~~~i~liDTPGii~~a~ 316 (454)
.++||||.||||||||+|+||.+...+++|||||++|+.|.+......- +......+.|+|++|++++||
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 3689999999999999999999998889999999999999987642100 000113588999999999999
Q ss_pred cCCcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHH
Q 012884 317 LGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 357 (454)
Q Consensus 317 ~~~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL 357 (454)
.++|||.+||.+|+.+|+|++|||++. -+|..|++.+..||
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL 133 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTEL 133 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHH
Confidence 999999999999999999999999974 24556666555444
No 15
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=3.1e-21 Score=202.49 Aligned_cols=215 Identities=21% Similarity=0.240 Sum_probs=150.0
Q ss_pred eCCceeEEEecCCc----eeccccCcC--cce-eeecCCCCCCCccccchhhhc-cccccccccccccccccCCCCCHHH
Q 012884 190 PVPLGTVVKHKRGK----LFSDLAHPG--DEV-LVARGGRGGISLLEVPENRRK-RMTTLTTNIMRDDTDKGLPNAGKST 261 (454)
Q Consensus 190 ~vPvgtvv~~~~~~----~~~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~~~~-~~~~l~~k~~adVglVG~pNaGKST 261 (454)
.+|+.+++||.|.. ...++++.| +.+ +||++|.|...+.+....... .....+.+...+|+++|.|||||||
T Consensus 109 ~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKSt 188 (435)
T PRK00093 109 NKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSS 188 (435)
T ss_pred CCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHH
Confidence 57999999998852 345666665 344 899999886654432211000 0000001123589999999999999
Q ss_pred HHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc----hhhcccccccEEE
Q 012884 262 LLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR----NFLRHLRRTRLLV 336 (454)
Q Consensus 262 LlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~----~fl~~i~~advll 336 (454)
|+|+|++....+ +++++||++.....+... +..+.++||||+.+..+....+.. ..++++++||++|
T Consensus 189 lin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~i 260 (435)
T PRK00093 189 LINALLGEERVIVSDIAGTTRDSIDTPFERD--------GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVL 260 (435)
T ss_pred HHHHHhCCCceeecCCCCceEEEEEEEEEEC--------CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEE
Confidence 999999887654 889999998876666543 247999999999876655443332 3467889999999
Q ss_pred EEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH----h---cCCceecccccccHH
Q 012884 337 HVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K---IGCDKVTSETELSSE 409 (454)
Q Consensus 337 ~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~----~---~g~~~~sa~~~~~~~ 409 (454)
+|+|++.+.+.++.+.+....+ .++|+++|+||||+.+.+ ..+++.+.+. . ..+..+++....++.
T Consensus 261 lViD~~~~~~~~~~~i~~~~~~------~~~~~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~ 333 (435)
T PRK00093 261 LVIDATEGITEQDLRIAGLALE------AGRALVIVVNKWDLVDEK-TMEEFKKELRRRLPFLDYAPIVFISALTGQGVD 333 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCCCHH-HHHHHHHHHHHhcccccCCCEEEEeCCCCCCHH
Confidence 9999999888888776544333 379999999999998542 2334433333 2 345678888999999
Q ss_pred HHHHHHHhhc
Q 012884 410 DAVKSLSTEG 419 (454)
Q Consensus 410 e~~~~l~~~~ 419 (454)
+.+..+....
T Consensus 334 ~l~~~i~~~~ 343 (435)
T PRK00093 334 KLLEAIDEAY 343 (435)
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 16
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.85 E-value=1.9e-21 Score=196.60 Aligned_cols=174 Identities=35% Similarity=0.510 Sum_probs=129.7
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC----------------cccccccEEEecCCCCc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----------------AEKYSSEATLADLPGLI 312 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~----------------~~~~~~~i~liDTPGii 312 (454)
||+||.||||||||+|+|++.+..+++|||||++|+.|...+..... .......++++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999999998889999999999999876421000 00011369999999999
Q ss_pred cccccCCcccchhhcccccccEEEEEEeCCC-------------CCCHhhHHHHHHHHHhcC------------------
Q 012884 313 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMYN------------------ 361 (454)
Q Consensus 313 ~~a~~~~~lg~~fl~~i~~advll~ViDas~-------------~~~~~d~~~l~~eL~~~~------------------ 361 (454)
++++.+++++..|+.+++.||++++|+|++. .++.+|++.+..||..++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999974 245667777666655420
Q ss_pred -------------------------------C------------------CCCCCCEEEEEeCCCCCChHHHHHHHHHHH
Q 012884 362 -------------------------------P------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEI 392 (454)
Q Consensus 362 -------------------------------~------------------~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l 392 (454)
+ -+..+|+|+|+||+|+....+..+.++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~ 240 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLKY 240 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhhC
Confidence 0 023589999999999876554444343322
Q ss_pred HhcCCceecccccccHHHHHH-HHHhhcCcc
Q 012884 393 LKIGCDKVTSETELSSEDAVK-SLSTEGGEA 422 (454)
Q Consensus 393 ~~~g~~~~sa~~~~~~~e~~~-~l~~~~~~~ 422 (454)
....+...++..+.++.+..+ .+...+...
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 222356778888888988886 577666443
No 17
>PTZ00258 GTP-binding protein; Provisional
Probab=99.85 E-value=3.1e-21 Score=199.14 Aligned_cols=149 Identities=28% Similarity=0.458 Sum_probs=116.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC--------c-ccccccEEEecCCCCcccccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG--------A-EKYSSEATLADLPGLIEGAHL 317 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~--------~-~~~~~~i~liDTPGii~~a~~ 317 (454)
.+||+||+||||||||+|+|++.+..+++|||||++|+.|.+......- . .....++.++||||++++++.
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~ 101 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASE 101 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcc
Confidence 4789999999999999999999998889999999999999987642110 0 000136999999999999999
Q ss_pred CCcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHHhcCCC------------------------
Q 012884 318 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPD------------------------ 363 (454)
Q Consensus 318 ~~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~~~~~~------------------------ 363 (454)
+++++.+|+.+|++||+++||||+.. .++.+|++.+..||..++..
T Consensus 102 g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~~~~ 181 (390)
T PTZ00258 102 GEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKEEKV 181 (390)
T ss_pred hhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhHHH
Confidence 89999999999999999999999852 35677777766665533210
Q ss_pred ------------------------------------CCCCCEEEEEeCC--CC-CChHHHHHHHHHHHHhc
Q 012884 364 ------------------------------------YLERPFIVVLNKI--DL-PEARDRLQSLTEEILKI 395 (454)
Q Consensus 364 ------------------------------------~~~kp~IvV~NK~--Dl-~~~~e~~~~l~~~l~~~ 395 (454)
+..||+++|+||. |+ ....+.++.+.+.....
T Consensus 182 ~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~ 252 (390)
T PTZ00258 182 ELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEK 252 (390)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhc
Confidence 3469999999999 87 34555667777766654
No 18
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=5.8e-21 Score=212.19 Aligned_cols=241 Identities=21% Similarity=0.216 Sum_probs=159.8
Q ss_pred eCCceeEEEecCCc----eeccccCcC--cce-eeecCCCCCCCccccchh----hhccccccccccccccccccCCCCC
Q 012884 190 PVPLGTVVKHKRGK----LFSDLAHPG--DEV-LVARGGRGGISLLEVPEN----RRKRMTTLTTNIMRDDTDKGLPNAG 258 (454)
Q Consensus 190 ~vPvgtvv~~~~~~----~~~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~----~~~~~~~l~~k~~adVglVG~pNaG 258 (454)
++|+.+|+||.|.. ...+++.+| +.+ +||++|.|...+.+.... .......++.....+|+++|.||||
T Consensus 383 ~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvG 462 (712)
T PRK09518 383 GKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVG 462 (712)
T ss_pred CCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCC
Confidence 68999999998852 335555554 444 899999998765432111 0000000111224689999999999
Q ss_pred HHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc----chhhccccccc
Q 012884 259 KSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG----RNFLRHLRRTR 333 (454)
Q Consensus 259 KSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg----~~fl~~i~~ad 333 (454)
||||+|+|++.+.. ++++++||+++....+.++ +..+.||||||+.+......+.. ...+.++++||
T Consensus 463 KSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~--------~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~ad 534 (712)
T PRK09518 463 KSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID--------GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSE 534 (712)
T ss_pred HHHHHHHHhCccccccCCCCCCCcCcceeEEEEC--------CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCC
Confidence 99999999998875 4889999999988777654 24789999999976543322111 11245678999
Q ss_pred EEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH----hcC---Cceecccccc
Q 012884 334 LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----KIG---CDKVTSETEL 406 (454)
Q Consensus 334 vll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~----~~g---~~~~sa~~~~ 406 (454)
++++|+|++.+.+.++.+.+..... .++|+|+|+||||+.+... .+.+.+.+. ... +..+++.+..
T Consensus 535 vvilViDat~~~s~~~~~i~~~~~~------~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~~~~~ii~iSAktg~ 607 (712)
T PRK09518 535 LALFLFDASQPISEQDLKVMSMAVD------AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRVTWARRVNLSAKTGW 607 (712)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCCCCCCEEEEECCCCC
Confidence 9999999999888888776544333 4799999999999986422 233333332 222 2467999999
Q ss_pred cHHHHHHHHHhhcCcccccccccccccccccccccCCCc
Q 012884 407 SSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 445 (454)
Q Consensus 407 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~led~~~p 445 (454)
++.+.+..++..........++..+..-..+.++.+|+|
T Consensus 608 gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~p 646 (712)
T PRK09518 608 HTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHP 646 (712)
T ss_pred CHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCCC
Confidence 999999988876654333333333333233334445554
No 19
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.84 E-value=1.1e-20 Score=171.61 Aligned_cols=160 Identities=43% Similarity=0.741 Sum_probs=121.1
Q ss_pred cccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcccc
Q 012884 251 DKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 330 (454)
Q Consensus 251 lVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~ 330 (454)
++|.+|||||||+|+|++.+..++++++||.+++.+.+.+.. ..++.+|||||+.+.....+.+...++..++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-------GARIQVADIPGLIEGASEGRGLGNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-------CCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence 579999999999999999877678999999999988876541 2479999999997665555556667788889
Q ss_pred cccEEEEEEeCCCC------CCHhhHHHHHHHHHhcCCC-----CCCCCEEEEEeCCCCCChHHHHHHHH-HHH--HhcC
Q 012884 331 RTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPD-----YLERPFIVVLNKIDLPEARDRLQSLT-EEI--LKIG 396 (454)
Q Consensus 331 ~advll~ViDas~~------~~~~d~~~l~~eL~~~~~~-----~~~kp~IvV~NK~Dl~~~~e~~~~l~-~~l--~~~g 396 (454)
.+|++++|+|+++. .+.++...+..++..+... ...+|+++|+||+|+....+..+... ... ....
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE 153 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence 99999999999987 4566777777777654322 24799999999999986544322211 111 1234
Q ss_pred CceecccccccHHHHHHHHHh
Q 012884 397 CDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 397 ~~~~sa~~~~~~~e~~~~l~~ 417 (454)
+..+++....++.+.++.++.
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHh
Confidence 567788889999998888763
No 20
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=184.43 Aligned_cols=162 Identities=26% Similarity=0.280 Sum_probs=126.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~f 325 (454)
-||+||+||||||||+|+|.+++..| ++.|.||+....|.+..+. .+++++||||+.+..+ +++.+.+..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--------~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--------AQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--------ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 47899999999999999999999988 9999999999999998652 4899999999987643 334455567
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh----cCCceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----IGCDKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~----~g~~~~s 401 (454)
...+..+|+++||+|+..+....|.. +.+.|+. ...|.++++||+|+......+..+.+.+.. ..+.+.+
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~-il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEF-ILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHH-HHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence 77899999999999999865444433 3344552 368999999999998876644445444433 2456788
Q ss_pred ccccccHHHHHHHHHhhcCccc
Q 012884 402 SETELSSEDAVKSLSTEGGEAD 423 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~~~ 423 (454)
+....++......+...+....
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCC
Confidence 9999999999999988876433
No 21
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.83 E-value=1.4e-20 Score=192.42 Aligned_cols=113 Identities=35% Similarity=0.593 Sum_probs=92.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC--------cc-cccccEEEecCCCCccccccC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG--------AE-KYSSEATLADLPGLIEGAHLG 318 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~--------~~-~~~~~i~liDTPGii~~a~~~ 318 (454)
+||+||+||||||||+|+|++++..+++|||||++|+.|.+....... +. ....++.++||||++++++.+
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g 83 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 83 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChH
Confidence 689999999999999999999998889999999999999988653110 00 001259999999999999999
Q ss_pred CcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHHhc
Q 012884 319 KGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY 360 (454)
Q Consensus 319 ~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~~~ 360 (454)
++++.+|+.++++||++++|||+.. .+|..|++.+..||..+
T Consensus 84 ~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~ 135 (364)
T PRK09601 84 EGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILA 135 (364)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999853 25667777766666544
No 22
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=2.4e-20 Score=192.40 Aligned_cols=155 Identities=26% Similarity=0.288 Sum_probs=125.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccc--ccCCcccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HLGKGLGR 323 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a--~~~~~lg~ 323 (454)
..|++||+||||||||+|+|++.+..| +++|++|+|++.+...+. +..|.++||+|+.... ...+.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~--------~~~f~lIDTgGl~~~~~~~l~~~i~~ 75 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL--------GREFILIDTGGLDDGDEDELQELIRE 75 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc--------CceEEEEECCCCCcCCchHHHHHHHH
Confidence 358999999999999999999999887 999999999999988754 4579999999998654 23344556
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCc---ee
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD---KV 400 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~---~~ 400 (454)
+.+.+++.||++|||+|+..+.+.+|..... .|.. .++|+|+|+||+|-... ++...++..+|+. ..
T Consensus 76 Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~-~Lr~-----~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~I 145 (444)
T COG1160 76 QALIAIEEADVILFVVDGREGITPADEEIAK-ILRR-----SKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPI 145 (444)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh-----cCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEe
Confidence 7888999999999999999988888877654 4552 36999999999997643 3344556667654 56
Q ss_pred cccccccHHHHHHHHHhhc
Q 012884 401 TSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~ 419 (454)
|+....++.+....+...+
T Consensus 146 SA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ehhhccCHHHHHHHHHhhc
Confidence 8888999999999988655
No 23
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=2.3e-21 Score=176.79 Aligned_cols=149 Identities=28% Similarity=0.383 Sum_probs=105.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc--CCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~--~~~lg~~f 325 (454)
+|++||.||||||||+|+|++.+..+++||+||.+...|.+.+.. ..+.++||||+..-... .+.+...+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--------~~~~lvDlPG~ysl~~~s~ee~v~~~~ 73 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--------QQVELVDLPGIYSLSSKSEEERVARDY 73 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--------EEEEEEE----SSSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--------ceEEEEECCCcccCCCCCcHHHHHHHH
Confidence 689999999999999999999998899999999999999998652 48999999998653322 12233333
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~sa 402 (454)
+. -+..|++++|+|++.. ..++..+.+.++ .++|+++|+||+|+..... ..+.+.+.+ .......++
T Consensus 74 l~-~~~~D~ii~VvDa~~l--~r~l~l~~ql~e------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~sa 143 (156)
T PF02421_consen 74 LL-SEKPDLIIVVVDATNL--ERNLYLTLQLLE------LGIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVSA 143 (156)
T ss_dssp HH-HTSSSEEEEEEEGGGH--HHHHHHHHHHHH------TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEBT
T ss_pred Hh-hcCCCEEEEECCCCCH--HHHHHHHHHHHH------cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEEe
Confidence 32 3679999999999863 455655555444 4799999999999875432 134444443 234556778
Q ss_pred cccccHHHHHHH
Q 012884 403 ETELSSEDAVKS 414 (454)
Q Consensus 403 ~~~~~~~e~~~~ 414 (454)
....++++..+.
T Consensus 144 ~~~~g~~~L~~~ 155 (156)
T PF02421_consen 144 RTGEGIDELKDA 155 (156)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHhh
Confidence 888888887654
No 24
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.83 E-value=2.1e-20 Score=194.19 Aligned_cols=112 Identities=42% Similarity=0.621 Sum_probs=90.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCC----------------CcccccccEEEecCCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------------GAEKYSSEATLADLPGL 311 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~----------------~~~~~~~~i~liDTPGi 311 (454)
+||+||+||||||||+|+|++.+..+++|||||++|+.|.+...... ........++++||||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 68999999999999999999999888999999999999987642100 00001136889999999
Q ss_pred ccccccCCcccchhhcccccccEEEEEEeCCC-------------CCCHhhHHHHHHHHHh
Q 012884 312 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRM 359 (454)
Q Consensus 312 i~~a~~~~~lg~~fl~~i~~advll~ViDas~-------------~~~~~d~~~l~~eL~~ 359 (454)
+++++.+++++.+|++++++||++++|+|+.. .++.+|++.+..||..
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~ 143 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDM 143 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999972 2456666666555543
No 25
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=9.2e-20 Score=180.25 Aligned_cols=159 Identities=22% Similarity=0.177 Sum_probs=117.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc-CCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~-~~~lg~~f 325 (454)
.|+++|.||||||||+|+|++.+..+ +++|+||++...+..... ..++.|+||||+.+..+. .+.+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~--------~~qii~vDTPG~~~~~~~l~~~~~~~~ 73 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG--------ASQIIFIDTPGFHEKKHSLNRLMMKEA 73 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC--------CcEEEEEECcCCCCCcchHHHHHHHHH
Confidence 47899999999999999999988654 899999998877766533 237999999999764221 12223345
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc---CCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~sa 402 (454)
..+++.+|++++|+|++.....+ +.+.+.+.. .++|+++|+||+|+....+..+.+....... .+.++++
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 146 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISA 146 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEec
Confidence 67789999999999999865443 444555553 3689999999999986544333333333322 3577899
Q ss_pred cccccHHHHHHHHHhhcCc
Q 012884 403 ETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~~ 421 (454)
....++.+.++.+...+..
T Consensus 147 ~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 147 LTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCCCHHHHHHHHHHhCCC
Confidence 9999999999999877644
No 26
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.82 E-value=1.8e-20 Score=185.69 Aligned_cols=113 Identities=37% Similarity=0.606 Sum_probs=91.8
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC---cccc------cccEEEecCCCCccccccCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---AEKY------SSEATLADLPGLIEGAHLGK 319 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~---~~~~------~~~i~liDTPGii~~a~~~~ 319 (454)
||+||+||||||||+|+|++++..+++|||||++|+.|.+.+....- ...+ ..++.++||||++++++.++
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 68999999999999999999999889999999999999987643210 0001 12599999999999999999
Q ss_pred cccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHHhcC
Q 012884 320 GLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYN 361 (454)
Q Consensus 320 ~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~~~~ 361 (454)
+++.+|+.++++||++++|||+.. -++..|++.+..||..++
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d 132 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILAD 132 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999853 156677777666665443
No 27
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=2.1e-19 Score=178.35 Aligned_cols=137 Identities=29% Similarity=0.555 Sum_probs=104.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC-cccch-
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRN- 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~-~lg~~- 324 (454)
.-|-+.|+||||||||+++|+++++.|++|||||...++|.+.... .+++++||||+.+..-.+. .+..+
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--------~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--------LRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--------ceEEEecCCcccCCChHHhcHHHHHH
Confidence 3466789999999999999999999999999999999999998652 3899999999987543321 23333
Q ss_pred --hhcccccccEEEEEEeCCC--CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCc
Q 012884 325 --FLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 398 (454)
Q Consensus 325 --fl~~i~~advll~ViDas~--~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~ 398 (454)
.++|+ .++|||++|.|. +-+.++...|.+++... ...|+++|+||+|+.+. +.++++...+...+..
T Consensus 241 i~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~----f~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~~~~ 311 (346)
T COG1084 241 ILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKEL----FKAPIVVVINKIDIADE-EKLEEIEASVLEEGGE 311 (346)
T ss_pred HHHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh----cCCCeEEEEecccccch-hHHHHHHHHHHhhccc
Confidence 45565 689999999986 55666666666777643 35899999999999864 4456666555554443
No 28
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.80 E-value=1.6e-19 Score=185.23 Aligned_cols=159 Identities=30% Similarity=0.322 Sum_probs=116.9
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccc-cccCCcccch
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG-AHLGKGLGRN 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~-a~~~~~lg~~ 324 (454)
..+|++||+||||||||+|+|++.+..+.+++|||+++....+.... +..+.||||||+++. .+.-..--..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-------~~~i~l~DT~G~~~~l~~~lie~f~~ 261 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-------GGEVLLTDTVGFIRDLPHELVAAFRA 261 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-------CceEEEEecCcccccCCHHHHHHHHH
Confidence 46799999999999999999999886668999999999988887632 237999999999653 1110011123
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-cCCceeccc
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKVTSE 403 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-~g~~~~sa~ 403 (454)
.+.++..||++|+|+|++++...++...+.+.+.... ..++|+++|+||+|+.+..+ ...+ ... ..+..+++.
T Consensus 262 tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~--~~~~piIlV~NK~Dl~~~~~-v~~~---~~~~~~~i~iSAk 335 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELG--AEDIPQLLVYNKIDLLDEPR-IERL---EEGYPEAVFVSAK 335 (351)
T ss_pred HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc--cCCCCEEEEEEeecCCChHh-HHHH---HhCCCCEEEEEcc
Confidence 4567889999999999998877777766666666543 23689999999999976432 2211 111 234678989
Q ss_pred ccccHHHHHHHHHh
Q 012884 404 TELSSEDAVKSLST 417 (454)
Q Consensus 404 ~~~~~~e~~~~l~~ 417 (454)
+..++.+.+..+..
T Consensus 336 tg~GI~eL~~~I~~ 349 (351)
T TIGR03156 336 TGEGLDLLLEAIAE 349 (351)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999998887753
No 29
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=4.2e-19 Score=172.27 Aligned_cols=160 Identities=33% Similarity=0.473 Sum_probs=121.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
++|+++|.||+|||||+|+|++....+++|+|||.++..+.+.+. +..+++|||||+.+.+....++...++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--------~~~i~l~DtpG~~~~~~~~~~~~~~~l 72 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--------GAKIQLLDLPGIIEGAADGKGRGRQVI 72 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--------CeEEEEEECCCcccccccchhHHHHHH
Confidence 468999999999999999999998888999999999999988764 247999999999887655556666788
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHH--------------------------------------------hcC-
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELR--------------------------------------------MYN- 361 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~--------------------------------------------~~~- 361 (454)
..++.+|++++|+|+++.. ++.+.+.++|+ .|.
T Consensus 73 ~~~~~ad~il~V~D~t~~~--~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i 150 (233)
T cd01896 73 AVARTADLILMVLDATKPE--GHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKI 150 (233)
T ss_pred HhhccCCEEEEEecCCcch--hHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCe
Confidence 8899999999999997642 23333333332 221
Q ss_pred ---------------------CCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceecccccccHHHHHHHHHhhcC
Q 012884 362 ---------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 362 ---------------------~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
.....+|+++|+||+|+...++ .+.+ .....+...++....++.+.++.+...++
T Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-~~~~---~~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 151 HNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-LDLL---ARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-HHHH---hcCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 1123479999999999986543 2322 22345677899999999999999886553
No 30
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=2.4e-19 Score=185.47 Aligned_cols=156 Identities=24% Similarity=0.235 Sum_probs=117.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc-chh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-RNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg-~~f 325 (454)
+|+++|.||||||||||+|++.++.| +++|+||+|.....+..+. ..+.++||+|+++....=+..| .+.
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--------~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--------IPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--------EEEEEEecCCcccCccHHHHHHHHHH
Confidence 68999999999999999999999988 9999999999999998763 4899999999987543222222 245
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceeccccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 405 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~ 405 (454)
...+++||+++||+|++.+.+.++...+. .+ ..++|+++|+||+||..... ...+ +......+...++.+.
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~------~~~~~~i~v~NK~DL~~~~~-~~~~-~~~~~~~~i~iSa~t~ 361 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLALIE-LL------PKKKPIIVVLNKADLVSKIE-LESE-KLANGDAIISISAKTG 361 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHHHHH-hc------ccCCCEEEEEechhcccccc-cchh-hccCCCceEEEEecCc
Confidence 67889999999999999976677766654 12 24799999999999987543 1222 1222233566777777
Q ss_pred ccHHHHHHHHHhhcC
Q 012884 406 LSSEDAVKSLSTEGG 420 (454)
Q Consensus 406 ~~~~e~~~~l~~~~~ 420 (454)
.++.+..+.+.....
T Consensus 362 ~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 362 EGLDALREAIKQLFG 376 (454)
T ss_pred cCHHHHHHHHHHHHh
Confidence 777777666655443
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=2.2e-18 Score=156.05 Aligned_cols=159 Identities=27% Similarity=0.367 Sum_probs=109.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC-cccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~-~lg~~fl 326 (454)
.|.++|.+|||||||+|+|++.+..+.+++++|.++..+.+... ..+++||||||+.+.....+ .+....+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 73 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--------YLRWQVIDTPGLLDRPLEERNTIEMQAI 73 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--------ceEEEEEECCCcCCccccCCchHHHHHH
Confidence 57899999999999999999988777889999998888776543 23899999999864322111 1111111
Q ss_pred ccc-ccccEEEEEEeCCCCCC--HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCceec
Q 012884 327 RHL-RRTRLLVHVIDAAAENP--VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVT 401 (454)
Q Consensus 327 ~~i-~~advll~ViDas~~~~--~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~~s 401 (454)
..+ ..+|++|+|+|+++... .++...+.+++... ..+.|+++|+||+|+.+..+.. +..+... ...+.+++
T Consensus 74 ~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S 149 (168)
T cd01897 74 TALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL---FKNKPVIVVLNKIDLLTFEDLS-EIEEEEELEGEEVLKIS 149 (168)
T ss_pred HHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh---cCcCCeEEEEEccccCchhhHH-HHHHhhhhccCceEEEE
Confidence 111 23689999999987543 23444455555532 2379999999999998654322 2222222 23467889
Q ss_pred ccccccHHHHHHHHHhh
Q 012884 402 SETELSSEDAVKSLSTE 418 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~ 418 (454)
+.+..++++.++.+++.
T Consensus 150 a~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 150 TLTEEGVDEVKNKACEL 166 (168)
T ss_pred ecccCCHHHHHHHHHHH
Confidence 99999999999998854
No 32
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=1.7e-18 Score=181.64 Aligned_cols=162 Identities=30% Similarity=0.348 Sum_probs=118.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccc-cc-cCCcccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG-AH-LGKGLGR 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~-a~-~~~~lg~ 323 (454)
+..|++||.||||||||+|+|++++..+.+++|||+++....+.... ...+.++||||+++. .+ .-+.+ .
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-------~~~~~l~DTaG~~r~lp~~lve~f-~ 268 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-------VGETVLADTVGFIRHLPHDLVAAF-K 268 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-------CCeEEEEecCcccccCCHHHHHHH-H
Confidence 35789999999999999999999888788999999999988776532 137899999999653 11 10111 2
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC-Cceecc
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG-CDKVTS 402 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g-~~~~sa 402 (454)
..+.+++.+|++|+|+|++++...+++..+.+.+.... ..++|+++|+||+|+...... .+........ +..+++
T Consensus 269 ~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~~v~ISA 344 (426)
T PRK11058 269 ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDDFEP--RIDRDEENKPIRVWLSA 344 (426)
T ss_pred HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCchhH--HHHHHhcCCCceEEEeC
Confidence 34567789999999999999877777766666666543 236899999999999753221 1111111112 245899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.++.+...+
T Consensus 345 ktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 345 QTGAGIPLLFQALTERL 361 (426)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999988766
No 33
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=3.1e-18 Score=174.56 Aligned_cols=162 Identities=29% Similarity=0.316 Sum_probs=127.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch-
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN- 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~- 324 (454)
+..|++||++|||||||+|+|+++.....+..|+|++|....+.... +.++.+.||-|+|+. +...|...
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-------g~~vlLtDTVGFI~~--LP~~LV~AF 262 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-------GRKVLLTDTVGFIRD--LPHPLVEAF 262 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-------CceEEEecCccCccc--CChHHHHHH
Confidence 56799999999999999999999988889999999999999988653 247999999999875 33344444
Q ss_pred --hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceecc
Q 012884 325 --FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTS 402 (454)
Q Consensus 325 --fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa 402 (454)
+|.....+|++|||||++++...+.++...+.|.... ...+|+|+|+||+|+....+.+..+.... . .....|+
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~--~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-~-~~v~iSA 338 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG--ADEIPIILVLNKIDLLEDEEILAELERGS-P-NPVFISA 338 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC--CCCCCEEEEEecccccCchhhhhhhhhcC-C-CeEEEEe
Confidence 4556678999999999999988888888888888754 34699999999999887644333332222 1 3566788
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
.+..+++.....+...+.
T Consensus 339 ~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 339 KTGEGLDLLRERIIELLS 356 (411)
T ss_pred ccCcCHHHHHHHHHHHhh
Confidence 889999888888776654
No 34
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=3.4e-18 Score=169.99 Aligned_cols=111 Identities=39% Similarity=0.626 Sum_probs=92.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcc---cc------cccEEEecCCCCccccccC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAE---KY------SSEATLADLPGLIEGAHLG 318 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~---~~------~~~i~liDTPGii~~a~~~ 318 (454)
++|+||.||+|||||+|+|++.....++|||+|++|+.+.+......-+. .| .-.+++.|++|+.++||.+
T Consensus 22 kiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G 101 (391)
T KOG1491|consen 22 KIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAG 101 (391)
T ss_pred eeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccC
Confidence 78999999999999999999999889999999999999988754221100 01 1258999999999999999
Q ss_pred CcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHH
Q 012884 319 KGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELR 358 (454)
Q Consensus 319 ~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~ 358 (454)
+|||..||.||+.+|.|++|+++.. -+|..|++++.+||.
T Consensus 102 ~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~ 151 (391)
T KOG1491|consen 102 EGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELR 151 (391)
T ss_pred cCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHH
Confidence 9999999999999999999999865 256667776666654
No 35
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.75 E-value=1.3e-17 Score=156.92 Aligned_cols=157 Identities=29% Similarity=0.341 Sum_probs=115.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc--
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-- 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~-- 323 (454)
..+|+++|.+|||||||+|+|++....+.+++++|+++....+.+.. ...+++|||||+.+.... .+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~--~~~~~~ 111 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-------GREVLLTDTVGFIRDLPH--QLVEAF 111 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-------CceEEEeCCCccccCCCH--HHHHHH
Confidence 46899999999999999999999876667888999988877776532 127999999999653211 1111
Q ss_pred -hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCcee
Q 012884 324 -NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKV 400 (454)
Q Consensus 324 -~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~ 400 (454)
..+.++..+|++++|+|++.+....+...+.+.+..+. ..++|+++|+||+|+....... ..+.. ..+..+
T Consensus 112 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~--~~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~~~~ 185 (204)
T cd01878 112 RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELG--AEDIPMILVLNKIDLLDDEELE----ERLEAGRPDAVFI 185 (204)
T ss_pred HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC--cCCCCEEEEEEccccCChHHHH----HHhhcCCCceEEE
Confidence 22345678999999999998877777666666666543 2368999999999998654322 12222 245678
Q ss_pred cccccccHHHHHHHHHh
Q 012884 401 TSETELSSEDAVKSLST 417 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~ 417 (454)
++....++.+.+..++.
T Consensus 186 Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 186 SAKTGEGLDELLEAIEE 202 (204)
T ss_pred EcCCCCCHHHHHHHHHh
Confidence 99999999999988764
No 36
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.8e-17 Score=147.35 Aligned_cols=150 Identities=23% Similarity=0.296 Sum_probs=107.6
Q ss_pred ccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccchhhc
Q 012884 250 TDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNFLR 327 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~fl~ 327 (454)
+++|.+|||||||+|+|++.+. .+++++.+|.+.....+..+ +..+.++||||+.+... ....+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--------GREFILIDTGGIEPDDEGISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--------CeEEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 4789999999999999998764 34788999988777666543 24799999999976432 11112334456
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Cceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~sa~~ 404 (454)
.++.+|++++|+|+.......+.. +.+.+.. .++|+++|+||+|+...... ...+...+ +.++++..
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEeccc
Confidence 778899999999998765555443 3344543 36999999999999876443 22233333 46788888
Q ss_pred cccHHHHHHHHHh
Q 012884 405 ELSSEDAVKSLST 417 (454)
Q Consensus 405 ~~~~~e~~~~l~~ 417 (454)
..++++.++.+++
T Consensus 143 ~~gv~~l~~~l~~ 155 (157)
T cd01894 143 GRGIGDLLDAILE 155 (157)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988764
No 37
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=2.3e-17 Score=164.51 Aligned_cols=160 Identities=27% Similarity=0.357 Sum_probs=114.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~f 325 (454)
-|+++|.||||||||+|+|++.+..+ ++.+.||++...+.+..+ ..+++++||||+.+... .++.+....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--------~~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--------DAQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--------CceEEEEECCCCCCchhHHHHHHHHHH
Confidence 47899999999999999999988754 888999998877776542 13899999999965431 112223344
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh----cCCceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----IGCDKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~----~g~~~~s 401 (454)
...+..+|++++|+|++......+ ..+.+.+.. .++|+++|+||+|+....+.+....+.+.+ ..+..++
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~~~-~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGPGD-EFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCChhH-HHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence 567789999999999988433333 333344442 368999999999998443334444444433 2345778
Q ss_pred ccccccHHHHHHHHHhhcCc
Q 012884 402 SETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~ 421 (454)
+....++.+.++.+...+..
T Consensus 153 A~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCC
Confidence 88999999999998877643
No 38
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=2.1e-17 Score=168.88 Aligned_cols=159 Identities=23% Similarity=0.227 Sum_probs=114.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~ 324 (454)
.+|++||.||||||||+|+|.+.+..+ ++.+.||++...+.+..+ +.++.||||||+.+..+ ....+.+.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~--------~~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK--------DTQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC--------CeEEEEEECCCcCCCcccHHHHHHHH
Confidence 378999999999999999999987654 788999998888877654 23799999999965321 11222233
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc----CCcee
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKV 400 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~----g~~~~ 400 (454)
...+++.||++|+|+|++......+ ..+.+.+.. .+.|.++|+||+|+.+. ...++.+.+... .+.++
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~-~~il~~l~~-----~~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDIT-HNILDKLRS-----LNIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEE
Confidence 4456889999999999876432222 234444543 25788999999999753 234455555433 35678
Q ss_pred cccccccHHHHHHHHHhhcCc
Q 012884 401 TSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~~~ 421 (454)
++....++.+.+..+...+..
T Consensus 197 SAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred eccCccCHHHHHHHHHHhCCC
Confidence 999999999999999877754
No 39
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=3.6e-17 Score=146.01 Aligned_cols=151 Identities=25% Similarity=0.339 Sum_probs=105.8
Q ss_pred cccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc--CCcccchhhcc
Q 012884 251 DKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRH 328 (454)
Q Consensus 251 lVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~--~~~lg~~fl~~ 328 (454)
++|.+|||||||+|+|++....+.+++++|++.....+.++. ..+.+|||||+.+.... ...+...++.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--------KEIEIVDLPGTYSLSPYSEDEKVARDFLLG 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--------eEEEEEECCCccccCCCChhHHHHHHHhcC
Confidence 579999999999999999876678899999998887776542 37999999999654321 11223344444
Q ss_pred cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceecccccc
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSETEL 406 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~~~ 406 (454)
+.+|++++|+|++.... ... +..++.. .++|+++|+||+|+.+.............. ..+.++++....
T Consensus 73 -~~~d~vi~v~d~~~~~~--~~~-~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 73 -EKPDLIVNVVDATNLER--NLY-LTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGE 143 (158)
T ss_pred -CCCcEEEEEeeCCcchh--HHH-HHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCC
Confidence 68999999999987432 222 2334443 369999999999997653222222222222 346778888899
Q ss_pred cHHHHHHHHHhh
Q 012884 407 SSEDAVKSLSTE 418 (454)
Q Consensus 407 ~~~e~~~~l~~~ 418 (454)
++.+.++.++..
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999998888743
No 40
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.73 E-value=2.2e-17 Score=148.23 Aligned_cols=155 Identities=12% Similarity=0.056 Sum_probs=110.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++.+......+.+|.+.....+..+.. ..++.+|||||..+. ......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~D~~G~~~~-------~~~~~~ 68 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK------TVRLQLWDTAGQERF-------RSLIPS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE------EEEEEEEECCCcHHH-------HHHHHH
Confidence 6789999999999999999998877777777777766666654321 136899999997432 122334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|++++|+|++++.++++...+...+..... .+.|+++|+||+|+....+. .++....... ..+.++++..
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKA 146 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCC
Confidence 56789999999999987777777766666554321 26899999999999543221 2222222222 3466789999
Q ss_pred cccHHHHHHHHHh
Q 012884 405 ELSSEDAVKSLST 417 (454)
Q Consensus 405 ~~~~~e~~~~l~~ 417 (454)
..++.+.+..++.
T Consensus 147 ~~~v~~l~~~i~~ 159 (161)
T cd01861 147 GHNVKELFRKIAS 159 (161)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998874
No 41
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=8e-17 Score=144.80 Aligned_cols=157 Identities=22% Similarity=0.255 Sum_probs=109.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc---
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--- 322 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg--- 322 (454)
.+|+++|.+|+|||||+|+|++.... ..++++||++.....+... +..+.+|||||+.+..+....+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~iiDtpG~~~~~~~~~~~e~~~ 74 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--------GKKYTLIDTAGIRRKGKVEEGIEKYS 74 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--------CeeEEEEECCCCccccchhccHHHHH
Confidence 36889999999999999999987644 3778888887766555543 23689999999976543333322
Q ss_pred -chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh------
Q 012884 323 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK------ 394 (454)
Q Consensus 323 -~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-e~~~~l~~~l~~------ 394 (454)
...+.+++.+|++++|+|++.+.+.+....+.. +.. .++|+++|+||+|+.+.. +..+.+.+.+.+
T Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~-~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (174)
T cd01895 75 VLRTLKAIERADVVLLVIDATEGITEQDLRIAGL-ILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD 148 (174)
T ss_pred HHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHH-HHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence 123456788999999999998776665544433 332 368999999999997652 223333333322
Q ss_pred -cCCceecccccccHHHHHHHHHh
Q 012884 395 -IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 395 -~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+..+++....++.+.++.+.+
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHH
Confidence 23556788888888888877653
No 42
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=1e-17 Score=144.04 Aligned_cols=113 Identities=33% Similarity=0.508 Sum_probs=86.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC--cccch
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRN 324 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~--~lg~~ 324 (454)
+|+++|.||||||||+|+|++.+. .+++++++|..+..+.+.+. ...+.|+||||+.+...... .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~~~~vDtpG~~~~~~~~~~~~~~~~ 72 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--------NKKFILVDTPGINDGESQDNDGKEIRK 72 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--------TEEEEEEESSSCSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec--------eeeEEEEeCCCCcccchhhHHHHHHHH
Confidence 478999999999999999998755 45899999999877666553 24789999999987644322 13345
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 375 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK 375 (454)
+++.+..+|+++||+|++.. ..++...+.++|+ ..+|+++|+||
T Consensus 73 ~~~~~~~~d~ii~vv~~~~~-~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 73 FLEQISKSDLIIYVVDASNP-ITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HHHHHCTESEEEEEEETTSH-SHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 78888999999999997762 2344445555664 47999999998
No 43
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=1e-16 Score=143.65 Aligned_cols=149 Identities=21% Similarity=0.164 Sum_probs=99.7
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
|+++|.+|||||||+|+|++..... ...+++|.+.....+.... ...+.+|||||+.+ +....
T Consensus 3 i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~-------~~~~~ 68 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-------GKRLGFIDVPGHEK-------FIKNM 68 (164)
T ss_pred EEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-------CcEEEEEECCChHH-------HHHHH
Confidence 6899999999999999999754322 1235677776655554421 23799999999843 23344
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHHHHHHh-----cCC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILK-----IGC 397 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~---e~~~~l~~~l~~-----~g~ 397 (454)
...+..+|++++|+|++.....+..+.+ ..++.. ..+|+++|+||+|+.... ...+++.+.+.. ..+
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~-~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHL-EILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPI 143 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHH-HHHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence 5667889999999999864323333322 223321 135999999999998642 123445555543 345
Q ss_pred ceecccccccHHHHHHHHH
Q 012884 398 DKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~ 416 (454)
.++++....++.+.+..+.
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred EEEeCCCCcCHHHHHHHHh
Confidence 6778888889998887764
No 44
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.72 E-value=6.8e-17 Score=152.84 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=108.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc-CCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~-~~~lg~~fl 326 (454)
+|+++|.+|||||||++++.+.+......|.++.+.....+..+.. ...+.||||||+.+.... .........
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~------~~~l~i~Dt~G~~~~~~~~~~e~~~~~~ 75 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR------VYDLHILDVPNMQRYPGTAGQEWMDPRF 75 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE------EEEEEEEeCCCcccCCccchhHHHHHHH
Confidence 5789999999999999999976543332333333322223322210 126889999998543110 000111133
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceec
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~-~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~s 401 (454)
.+++.||++|+|+|++++.+.+..+.|.+++..+.. ...+.|+++|+||+|+...+ +..+.+........+.+++
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 155 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECS 155 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEec
Confidence 457889999999999998878877777766655431 12468999999999996532 1122222222234568899
Q ss_pred ccccccHHHHHHHHHhhcC
Q 012884 402 SETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~ 420 (454)
+.+..++.+.++.+....-
T Consensus 156 ak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 156 AKYNWHILLLFKELLISAT 174 (198)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999886653
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.71 E-value=4.3e-17 Score=147.34 Aligned_cols=157 Identities=19% Similarity=0.084 Sum_probs=108.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.||||||||+++|.+.+......|.++.+.....+..+.. ...+.+|||||+.+. .....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~D~~g~~~~-------~~~~~ 70 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK------TIKAQIWDTAGQERY-------RAITS 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEeCCChHHH-------HHHHH
Confidence 47899999999999999999987654444455444433333333210 136899999998542 12223
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
.+++.++++|+|+|+++..+.+++..|..++....+ .+.|+++|+||+|+...++. .++....... ..+.++++.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 456789999999999987777777777777765432 35899999999999754321 2222322332 457788999
Q ss_pred ccccHHHHHHHHHhh
Q 012884 404 TELSSEDAVKSLSTE 418 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~ 418 (454)
...++.+.++.+...
T Consensus 149 ~~~~v~~l~~~l~~~ 163 (165)
T cd01868 149 DGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988643
No 46
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.71 E-value=7.3e-17 Score=144.92 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=105.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||++++..... ...|+.|+.+.....+..+.. ...+.||||||..+. ......
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~~ 68 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQ------QCMLEILDTAGTEQF-------TAMRDL 68 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECCE------EEEEEEEECCCcccc-------chHHHH
Confidence 678999999999999999986542 244555554333333333211 136789999998442 222233
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-HHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-SLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~-~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|++++|+|+++..+.+++..|.+++..+.. ..+.|+++|+||+|+...+.... +....... ..+.++++..
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKS 147 (163)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCC
Confidence 46789999999999988778888777777765432 24689999999999975322211 11112222 3457889999
Q ss_pred cccHHHHHHHHHhh
Q 012884 405 ELSSEDAVKSLSTE 418 (454)
Q Consensus 405 ~~~~~e~~~~l~~~ 418 (454)
..++.+.+..++..
T Consensus 148 ~~~v~~l~~~l~~~ 161 (163)
T cd04136 148 KINVDEVFADLVRQ 161 (163)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988743
No 47
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.71 E-value=2.2e-17 Score=169.06 Aligned_cols=115 Identities=34% Similarity=0.576 Sum_probs=96.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCC--------Cc-ccccccEEEecCCCCcccccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEGAHL 317 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~--------~~-~~~~~~i~liDTPGii~~a~~ 317 (454)
++|+||+||+|||||+|+|++++. .+++|||||.+|+.|++.+.... .. ......+.++|+||++++++.
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~ 83 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASK 83 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhc
Confidence 689999999999999999999999 89999999999999999865311 00 000136899999999999999
Q ss_pred CCcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHHhcCC
Q 012884 318 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNP 362 (454)
Q Consensus 318 ~~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~~~~~ 362 (454)
+++++..|+.|+++||++++|+|+.. .++..++..+..||..++.
T Consensus 84 g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~ 138 (368)
T TIGR00092 84 GEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADE 138 (368)
T ss_pred ccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999864 2567888888888876653
No 48
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=6.2e-17 Score=169.53 Aligned_cols=155 Identities=24% Similarity=0.251 Sum_probs=115.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~f 325 (454)
+|++||.||||||||+|+|++.+..+ .+++++|++.....+.+. +..+.+|||||+..... ..+.+....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--------~~~~~liDTpG~~~~~~~~~~~~~~~~ 72 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--------GREFILIDTGGIEEDDDGLDKQIREQA 72 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC--------CeEEEEEECCCCCCcchhHHHHHHHHH
Confidence 47899999999999999999887644 889999999888877654 24799999999853211 112233456
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---ceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~---~~~sa 402 (454)
..+++.+|++++|+|+..+....+... ..+++. .++|+++|+||+|+....... ..+..+++ ..+++
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~~i-~~~l~~-----~~~piilVvNK~D~~~~~~~~----~~~~~lg~~~~~~vSa 142 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDEEI-AKWLRK-----SGKPVILVANKIDGKKEDAVA----AEFYSLGFGEPIPISA 142 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----hCCCEEEEEECccCCcccccH----HHHHhcCCCCeEEEeC
Confidence 677899999999999998766666443 455654 369999999999987643322 22334444 57888
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
....++.+.+..+...+.
T Consensus 143 ~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLP 160 (429)
T ss_pred CcCCChHHHHHHHHHhcC
Confidence 899999999998876553
No 49
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.70 E-value=1.3e-16 Score=142.59 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=104.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++.+. ...+..|+.+.....+..+.. ...+.+|||||..+. ......
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~l~~~ 68 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMRDQ 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-cCCcCCcchheEEEEEEECCE------EEEEEEEECCCCcch-------HHHHHH
Confidence 678999999999999999997653 234444443322222322210 125788999997432 222334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCceeccccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSETE 405 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~sa~~~ 405 (454)
+++.+|++++|+|.++..+.+++..+...+..+. ...+.|+++|+||+|+.......++..+..... .+.++++...
T Consensus 69 ~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (162)
T cd04138 69 YMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTR 147 (162)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCC
Confidence 5678999999999998776777766666665442 124789999999999976432233333333333 4567899999
Q ss_pred ccHHHHHHHHHh
Q 012884 406 LSSEDAVKSLST 417 (454)
Q Consensus 406 ~~~~e~~~~l~~ 417 (454)
.++.+.++.+..
T Consensus 148 ~gi~~l~~~l~~ 159 (162)
T cd04138 148 QGVEEAFYTLVR 159 (162)
T ss_pred CCHHHHHHHHHH
Confidence 999999988864
No 50
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=1e-16 Score=146.22 Aligned_cols=158 Identities=16% Similarity=0.044 Sum_probs=108.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.+||.||||||||++++++.+......+.++.+.....+..+. ....+.||||||..+ +.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG------KQIKLQIWDTAGQES-------FRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHH-------HHHHHH
Confidence 4789999999999999999998765433333333333333333221 123789999999733 223344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
.+++.+|++|+|+|++++.+.+++..|..++..+. ..+.|+++|+||+|+...... .++....... ..+.++++.
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAK 149 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 56788999999999998878888887777776653 246899999999999743221 2222223333 346678888
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.+..+++.+
T Consensus 150 ~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 150 TASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998887543
No 51
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=8.9e-17 Score=145.36 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=102.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc----cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 323 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I----a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~ 323 (454)
+|+++|.+|||||||+++|++..... .....+|.....+.+.++ ...+.+|||||+.+ +..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~-------~~~ 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG--------NARLKFWDLGGQES-------LRS 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEEC--------CEEEEEEECCCChh-------hHH
Confidence 36789999999999999998754321 122345555555555543 24799999999843 223
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---------
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--------- 394 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--------- 394 (454)
.+..+++.+|++++|+|+++.....+...+...+... ....+.|+++|+||+|+..... .+++.+.+..
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccccCCc
Confidence 3445678999999999998765555544443333221 1124799999999999876421 2233333221
Q ss_pred cCCceecccccccHHHHHHHHHh
Q 012884 395 IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 395 ~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+.++++.+..++.+.++.+++
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 23567888999999999988863
No 52
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=1.6e-16 Score=149.75 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=107.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCce-eeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfT-T~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.+|||||||+++|.+.... ..|..| ..+.....+..+.. ....+.||||||..+ +.....
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~-----~~~~l~l~Dt~G~~~-------~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPN-----TVVRLQLWDIAGQER-------FGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCC-----CEEEEEEEECCCchh-------hhhhHH
Confidence 5789999999999999999976432 222222 22332333333210 013689999999832 222334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh---cCCcee
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK---IGCDKV 400 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~--~~~~~kp~IvV~NK~Dl~~~~-e~~~~l~~~l~~---~g~~~~ 400 (454)
.+++.+|++|+|+|++++.+.+....|..++.... ......|+++|+||+|+.+.. ...+++.+.... ..+.++
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 148 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFET 148 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEE
Confidence 56788999999999999888888877777666421 112468999999999997321 112333333333 346788
Q ss_pred cccccccHHHHHHHHHhhcCc
Q 012884 401 TSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~~~ 421 (454)
++....++.+.++.+...+..
T Consensus 149 Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 149 SAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877644
No 53
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.70 E-value=4.2e-17 Score=172.50 Aligned_cols=153 Identities=24% Similarity=0.229 Sum_probs=112.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc-ch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-RN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg-~~ 324 (454)
.+|+++|.||||||||+|+|++.+.. ++++++||++.....+..+ +..+.+|||||+.+....-+.++ ..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--------g~~i~l~DT~G~~~~~~~ie~~gi~~ 287 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--------GIPLRLIDTAGIRETDDEVEKIGIER 287 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--------CeEEEEEeCCCCCCCccHHHHHHHHH
Confidence 47899999999999999999998764 5899999999887777654 23799999999965321111111 23
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceecccc
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 404 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~ 404 (454)
.+.+++.+|++++|+|++.+.+.++...|.. ..++|+++|+||+|+....... ......+..+++.+
T Consensus 288 ~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i~iSAkt 354 (449)
T PRK05291 288 SREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE-----EENGKPVIRISAKT 354 (449)
T ss_pred HHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh-----hccCCceEEEEeeC
Confidence 4567889999999999998776666554432 2478999999999997643321 11223456788888
Q ss_pred cccHHHHHHHHHhhcC
Q 012884 405 ELSSEDAVKSLSTEGG 420 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~~ 420 (454)
..++.+.++.+...+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999988876653
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=9.6e-17 Score=145.46 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=103.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCce-eeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfT-T~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|.++|.+|||||||++++...+... .+..| +.+.....+..+. ....+.||||||..+. ....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~-------~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSE-RQGNTIGVDFTMKTLEIEG------KRVKLQIWDTAGQERF-------RTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcc-cCCCccceEEEEEEEEECC------EEEEEEEEECCChHHH-------HHHH
Confidence 578999999999999999998754321 12111 1222222232221 1126899999997432 2223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~s 401 (454)
...++.+|++++|+|++++.+.+..+.|..++.... ..+.|+++|+||+|+...++ ....+.+.+....+.+++
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 445678999999999998877777777777676543 24689999999999975432 222233222223457889
Q ss_pred ccccccHHHHHHHHHhh
Q 012884 402 SETELSSEDAVKSLSTE 418 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~ 418 (454)
+....++.+.++.++..
T Consensus 148 a~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 148 AKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999988753
No 55
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.69 E-value=1.7e-16 Score=144.46 Aligned_cols=158 Identities=15% Similarity=0.050 Sum_probs=106.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||++++++.+......+.++.+.....+.... ....+.+|||||..+. .....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~D~~g~~~~-------~~~~~ 70 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG------KKIKLQIWDTAGQERF-------RTITT 70 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC------EEEEEEEEeCCchHHH-------HHHHH
Confidence 4789999999999999999997653322122222222222222221 0136899999997432 22234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
.+++.+|++|+|+|++++.+.+++..|..++..+. ..+.|+++|+||+|+.+..+. .++..+.... ..+.++++.
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAK 148 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 56788999999999998877777777777776653 246899999999999854321 2223333333 345788999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.+++..
T Consensus 149 ~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 149 ANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988543
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=2e-16 Score=142.19 Aligned_cols=156 Identities=19% Similarity=0.120 Sum_probs=105.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++.+... ...++.|+.+.....+..+. ....+.+|||||+.+. ......
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~~ 69 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDG------QWAILDILDTAGQEEF-------SAMREQ 69 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECC------EEEEEEEEECCCCcch-------hHHHHH
Confidence 788999999999999999987542 35555555433222222221 0136889999998432 223335
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|++++|+|+++..+.+....|..++.... ...+.|+++|+||+|+...... .++..+.... ..+.++++..
T Consensus 70 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (164)
T cd04145 70 YMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKD 148 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCC
Confidence 5678999999999998777777766666665432 1236899999999999764321 1222333333 3457889999
Q ss_pred cccHHHHHHHHHhh
Q 012884 405 ELSSEDAVKSLSTE 418 (454)
Q Consensus 405 ~~~~~e~~~~l~~~ 418 (454)
..++.+.++.++..
T Consensus 149 ~~~i~~l~~~l~~~ 162 (164)
T cd04145 149 RLNVDKAFHDLVRV 162 (164)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998754
No 57
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.69 E-value=2.2e-16 Score=143.48 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=103.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++.+....-.|.++.+.....+..+. ....+.+|||||..+. ......
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~g~~~~-------~~~~~~ 69 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND------KRVKLQIWDTAGQERY-------RTITTA 69 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCChHHH-------HHHHHH
Confidence 678999999999999999998764322122111111111121110 0136899999997532 223455
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~~ 404 (454)
+++.+|++++|+|+++..+.+.+..|..++..+. ....|+++|+||+|+.+.+.. .++..+.... ..+.++++..
T Consensus 70 ~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (165)
T cd01865 70 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKE 147 (165)
T ss_pred HccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 6788999999999998777777777777776554 236899999999999754321 1222222233 3467889999
Q ss_pred cccHHHHHHHHHhh
Q 012884 405 ELSSEDAVKSLSTE 418 (454)
Q Consensus 405 ~~~~~e~~~~l~~~ 418 (454)
..++.+.++.+...
T Consensus 148 ~~gv~~l~~~l~~~ 161 (165)
T cd01865 148 NINVKQVFERLVDI 161 (165)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988754
No 58
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=1.9e-16 Score=143.47 Aligned_cols=159 Identities=17% Similarity=0.079 Sum_probs=107.0
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+.+|+++|.+|||||||+++|+.........+..+.+.....+.+... ...+.+|||||+.+. ...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~~~D~~g~~~~-------~~~ 72 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE------KIKLQIWDTAGQERF-------RSI 72 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCCcHHH-------HHH
Confidence 3578999999999999999999865432222233333333333433211 125889999998432 222
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~---~g~~~~s 401 (454)
....+..+|++++|+|+++..+.+.+..|..++..+. ..+.|+++|+||+|+.+..+....+.+.+.+ ..+.+++
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~S 150 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA--NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETS 150 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEee
Confidence 3456778999999999988766666666666666543 2368999999999997544333333333333 3466889
Q ss_pred ccccccHHHHHHHHHhh
Q 012884 402 SETELSSEDAVKSLSTE 418 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~ 418 (454)
+.+..++.+.++.+++.
T Consensus 151 a~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 151 AKESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988753
No 59
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1.2e-16 Score=170.17 Aligned_cols=156 Identities=21% Similarity=0.223 Sum_probs=112.6
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~ 323 (454)
+.+|++||.||||||||+|+|++.+.. +.+.|++|++...+.+.+. +..+.||||||+..... ....+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~~~ 109 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN--------GRRFTVVDTGGWEPDAKGLQASVAE 109 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC--------CcEEEEEeCCCcCCcchhHHHHHHH
Confidence 467899999999999999999987654 4889999998877776543 24799999999863211 1111222
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---cee
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKV 400 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~---~~~ 400 (454)
.+..+++.||++|+|+|++++.+..+. .+.+.+.. .++|+++|+||+|+........ .+...++ .++
T Consensus 110 ~~~~~~~~aD~il~VvD~~~~~s~~~~-~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~~----~~~~~g~~~~~~i 179 (472)
T PRK03003 110 QAEVAMRTADAVLFVVDATVGATATDE-AVARVLRR-----SGKPVILAANKVDDERGEADAA----ALWSLGLGEPHPV 179 (472)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCCccchhhH----HHHhcCCCCeEEE
Confidence 344568899999999999987666553 34455653 4799999999999975322111 1222333 468
Q ss_pred cccccccHHHHHHHHHhhc
Q 012884 401 TSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~ 419 (454)
++....++.+.+..+...+
T Consensus 180 SA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred EcCCCCCcHHHHHHHHhhc
Confidence 8899999999999988665
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.69 E-value=1.6e-16 Score=143.90 Aligned_cols=158 Identities=16% Similarity=0.076 Sum_probs=106.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||++++.+.+......+..+.+.....+.... ...++.+|||||..+. .....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~D~~G~~~~-------~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERF-------RTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHhH-------HHHHH
Confidence 4688999999999999999997764433223223232223333221 0136899999997432 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
..++.+|++|+|+|+++..+.+++..|..++..+. ..+.|+++|+||+|+...... .++....... ..+.++++.
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAK 147 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 45678999999999998877777777777777654 236899999999998654321 1222222222 345778989
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
+..++.+.+..+++.+
T Consensus 148 ~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 148 NATNVEQAFMTMAREI 163 (166)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999987543
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.69 E-value=1.9e-16 Score=151.01 Aligned_cols=162 Identities=14% Similarity=0.028 Sum_probs=109.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.+||.+|||||||+++|.+....-...|..+.+.....+..+.. ....+.||||||.... ......
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-----~~~~~~i~Dt~G~~~~-------~~l~~~ 69 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-----LNVTLQVWDIGGQSIG-------GKMLDK 69 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCcHHH-------HHHHHH
Confidence 5789999999999999999976532222333344544444443211 1237899999997432 112234
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCChHHHH-HHHHHHHHh--cCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDRL-QSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~-~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~--~g~~~~sa~ 403 (454)
.++.+|++|+|+|+++..+.+++..|.+++..+... ....|+++|+||+|+.+.+... ++..+.... ..+.++++.
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAk 149 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAK 149 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECC
Confidence 567899999999999988888888888888765432 2346799999999997533221 122222222 335778999
Q ss_pred ccccHHHHHHHHHhhcCc
Q 012884 404 TELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~~ 421 (454)
+..++.+.++.++..+..
T Consensus 150 tg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 150 TGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999877643
No 62
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.68 E-value=4.2e-16 Score=142.70 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=100.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccC---------------CCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~---------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
+.|++||.+|+|||||+++|++....+.+ ..++|..+....+.+... .. ....+.||||||+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~--~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DG--QEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CC--CcEEEEEEECCCC
Confidence 36899999999999999999875432211 112343333222222100 00 1236889999999
Q ss_pred ccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHH
Q 012884 312 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLT 389 (454)
Q Consensus 312 i~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~l~ 389 (454)
.+ +...+..+++.+|++|+|+|++.+...+++..+..... .++|+++|+||+|+.+.. +..+++.
T Consensus 78 ~~-------~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~ 144 (179)
T cd01890 78 VD-------FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPSADPERVKQQIE 144 (179)
T ss_pred hh-------hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCcCCHHHHHHHHH
Confidence 54 33345567788999999999998766666665544332 368999999999986432 2223333
Q ss_pred HHHHh--cCCceecccccccHHHHHHHHHhh
Q 012884 390 EEILK--IGCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 390 ~~l~~--~g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
+.+.- ..+.++++....++.+.++.+...
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 145 DVLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 33221 124578999999999999888744
No 63
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.68 E-value=1.4e-16 Score=167.92 Aligned_cols=154 Identities=26% Similarity=0.337 Sum_probs=105.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc-ch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-RN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg-~~ 324 (454)
.+|+++|.||||||||+|+|++... .++++|+||++.....+.++. ..+.+|||||+.+....-+..+ ..
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--------~~v~l~DTaG~~~~~~~ie~~gi~~ 275 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--------ILIKLLDTAGIREHADFVERLGIEK 275 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--------EEEEEeeCCCcccchhHHHHHHHHH
Confidence 4789999999999999999998765 458999999998888777642 3789999999965321111111 12
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceecccc
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 404 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~ 404 (454)
...+++.+|++++|+|++.+.+.++. |..++.. .++|+++|+||+|+... + .+.+.+.+ ...+..+++..
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~-~-~~~~~~~~-~~~~~~vSak~ 345 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN-S-LEFFVSSK-VLNSSNLSAKQ 345 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCCc-c-hhhhhhhc-CCceEEEEEec
Confidence 45678899999999999987766654 3344432 36899999999999754 1 12222111 11234556665
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
.++.+.++.+...+
T Consensus 346 -~gI~~~~~~L~~~i 359 (442)
T TIGR00450 346 -LKIKALVDLLTQKI 359 (442)
T ss_pred -CCHHHHHHHHHHHH
Confidence 46666666555433
No 64
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.68 E-value=1.4e-16 Score=141.34 Aligned_cols=150 Identities=23% Similarity=0.189 Sum_probs=108.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc-ccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-LGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~-lg~~f 325 (454)
+|+++|.+|||||||+|+|++.... +.++++||.+.....+... ..++.+|||||+.+....-.. .....
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~DtpG~~~~~~~~~~~~~~~~ 74 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--------GIPVRLIDTAGIRETEDEIEKIGIERA 74 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--------CEEEEEEECCCcCCCcchHHHHHHHHH
Confidence 5789999999999999999987653 4778899987766666543 237899999998654321000 01134
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceeccccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 405 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~ 405 (454)
..++.++|++++|+|++...+..+.+.+.. ...+|+++|+||+|+.+..+. ........+..+++...
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKTG 142 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCCC
Confidence 567789999999999998777776665443 247999999999999875432 11112234667888888
Q ss_pred ccHHHHHHHHHh
Q 012884 406 LSSEDAVKSLST 417 (454)
Q Consensus 406 ~~~~e~~~~l~~ 417 (454)
.++++.++.+..
T Consensus 143 ~~v~~l~~~l~~ 154 (157)
T cd04164 143 EGLDELKEALLE 154 (157)
T ss_pred CCHHHHHHHHHH
Confidence 899998888764
No 65
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.68 E-value=2.6e-16 Score=141.38 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=104.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCce-eeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfT-T~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.+|||||||+++|.+.+..- .|..| +.+.....+..+. ....+.+|||||..+.. ....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRN------KEVRVNFFDLSGHPEYL-------EVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECC------eEEEEEEEECCccHHHH-------HHHH
Confidence 67899999999999999999876422 22222 1222122222221 12378999999984321 1223
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCC---CCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCcee
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD---YLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV 400 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~---~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~ 400 (454)
..++.+|++++|+|++++.+.+.+..|..++..+... ....|+++|+||+|+.+..+ ..++..+.... ..+.++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET 147 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence 3467899999999999887777777777777765432 24689999999999973211 12222222333 345688
Q ss_pred cccccccHHHHHHHHHhh
Q 012884 401 TSETELSSEDAVKSLSTE 418 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~ 418 (454)
++....++.+.++.+...
T Consensus 148 Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 148 SACTGEGVNEMFQTLFSS 165 (168)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999988754
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.8e-16 Score=148.09 Aligned_cols=159 Identities=15% Similarity=0.082 Sum_probs=109.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccc-eeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~-g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.+|||||||++++.+.+.....++.|+..... ..+..+. ...++.||||||..+. .....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG------VKVKLQIWDTAGQERF-------RSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC------EEEEEEEEeCCCcHHH-------HHhhH
Confidence 57899999999999999999877655555555432221 1222221 1237899999997432 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
..++.+|++|+|+|++...+.+++..|...+..+.+ ...|+++|+||+|+...++. .++....... ..+.++++.
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~ 146 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAK 146 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 456789999999999988777777777777776542 36899999999999643221 1222222222 356788999
Q ss_pred ccccHHHHHHHHHhhcCc
Q 012884 404 TELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~~ 421 (454)
...++.+.+..+++.+..
T Consensus 147 ~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 147 TGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999876643
No 67
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.68 E-value=3.2e-16 Score=148.98 Aligned_cols=157 Identities=12% Similarity=0.108 Sum_probs=109.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.|.++|..|||||||++++..... ...|+.|. .+.....+.++.. ..++.||||+|..+ +...+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~------~v~l~iwDtaGqe~-------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGK------KIRLQIWDTAGQER-------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCE------EEEEEEEeCCCchh-------hHHHHH
Confidence 467899999999999999986543 23343332 2322233333210 13789999999843 222234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH----hcCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----KIGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~----~~g~~~~sa 402 (454)
.+++.||++|+|+|+++..++++++.|.+++..+. ..+.|+++|+||+|+.+.++...+..+.+. ...+.++++
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 56788999999999999988998888888777654 246899999999999754332222222222 234678999
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
.+..++.+.|+.++....
T Consensus 146 ktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 146 KDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987663
No 68
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.68 E-value=2.8e-16 Score=141.71 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=105.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCC-CCccCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK-PDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~-~~Ia~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
+|+++|.+|||||||+++|.... ....+|..|+- +.....+..+.. ....+.+|||||.... ....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~l~i~Dt~G~~~~-------~~~~ 69 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTD-----NTVELFIFDSAGQELY-------SDMV 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCC-----CEEEEEEEECCCHHHH-------HHHH
Confidence 68899999999999999998643 33456665552 222222222210 1237899999997432 1223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH-HHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l-~~~l~~--~g~~~~sa 402 (454)
..+++++|++++|+|+++..+.++++.|.+++..+. .+.|+++|+||+|+....+..... ...... ..+.++++
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSA 146 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeC
Confidence 456788999999999998777777777777766543 468999999999996543221111 122222 23568899
Q ss_pred cccccHHHHHHHHHhh
Q 012884 403 ETELSSEDAVKSLSTE 418 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~ 418 (454)
.+..++.+.++.+++.
T Consensus 147 ~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 147 LRGVGYEEPFESLARA 162 (164)
T ss_pred CCCCChHHHHHHHHHH
Confidence 9999999999888754
No 69
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.68 E-value=4.3e-16 Score=140.02 Aligned_cols=154 Identities=18% Similarity=0.068 Sum_probs=103.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc--cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I--a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
+|.++|.+|||||||+++|++.+... .+..+++.... .+.+.. ...++.+|||||..+.. ...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~l~D~~g~~~~~-------~~~ 66 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVK--TLTVDG------KKVKLAIWDTAGQERFR-------TLT 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEE--EEEECC------EEEEEEEEECCCchhhh-------hhh
Confidence 57899999999999999999876533 22222222211 122211 01368999999974431 122
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCceeccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSE 403 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~~sa~ 403 (454)
...++.+|++++|+|+++..+.+++..|.+++..+.. ..+.|+++|+||+|+.......++..+... ...+.++++.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAK 145 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecC
Confidence 3456789999999999988777777777777776542 247999999999999743221222222222 3456788999
Q ss_pred ccccHHHHHHHHHh
Q 012884 404 TELSSEDAVKSLST 417 (454)
Q Consensus 404 ~~~~~~e~~~~l~~ 417 (454)
...++.+.++.+..
T Consensus 146 ~~~gi~~~~~~~~~ 159 (161)
T cd01863 146 TRDGVQQAFEELVE 159 (161)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999988764
No 70
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=3.3e-16 Score=141.60 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=104.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++.... .+..++.|+.+.....+..... ...+.+|||||+.+. ......
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~~ 68 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQ------QCMLEILDTAGTEQF-------TAMRDL 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECCE------EEEEEEEECCCcccc-------hhHHHH
Confidence 67899999999999999998543 2345665655433333333210 136789999998432 222233
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa~ 403 (454)
.++.+|++++|+|.++..+.++...|..++..+. ...+.|+++|+||+|+.... +..+.+.+.+. ..+.++++.
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAK 146 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCC
Confidence 5677999999999988777777766666665432 13478999999999997532 11223322222 346788999
Q ss_pred ccccHHHHHHHHHhh
Q 012884 404 TELSSEDAVKSLSTE 418 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~ 418 (454)
...++.+.+..++..
T Consensus 147 ~~~~v~~~~~~l~~~ 161 (164)
T cd04175 147 AKINVNEIFYDLVRQ 161 (164)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998754
No 71
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=3.2e-16 Score=140.70 Aligned_cols=156 Identities=20% Similarity=0.150 Sum_probs=105.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.||||||||+++|++.+......+..+.+.....+..+.. ...+.+|||||..+.. .....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~~-------~~~~~ 68 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK------RVKLQIWDTAGQERFR-------SITSS 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCChHHHH-------HHHHH
Confidence 6789999999999999999987654333344343333333332210 1368899999974321 12233
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa~ 403 (454)
.++.+|++++|+|++++.+.+++..|..++..+.. .+.|+++|+||+|+.... +..+.+.+.. ...+.++++.
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~ 145 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-GLPFFETSAK 145 (164)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHc-CCeEEEEeCC
Confidence 45679999999999988777777777777766542 379999999999987532 2222232221 2345678888
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.++..+
T Consensus 146 ~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 146 TNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8999999999887543
No 72
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.67 E-value=8.4e-16 Score=138.69 Aligned_cols=153 Identities=22% Similarity=0.180 Sum_probs=102.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
.|+++|.+|||||||+|+|+..+......+++|.+.....+..... ....+.++||||+.+. ......
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~iiDtpG~~~~-------~~~~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVL-----KIPGITFIDTPGHEAF-------TNMRAR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccC-----CcceEEEEeCCCcHHH-------HHHHHH
Confidence 3789999999999999999987665555667777655555543200 1247999999998432 112234
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HH-HHHHHHHHH--------hcCC
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DR-LQSLTEEIL--------KIGC 397 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-e~-~~~l~~~l~--------~~g~ 397 (454)
.+..+|++++|+|+++....+.+..+ ..+.. .++|+++|+||+|+.... +. .+.+..... ...+
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~-~~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAI-KLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQI 143 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcE
Confidence 56789999999999986555554444 33443 468999999999997532 11 122221111 1235
Q ss_pred ceecccccccHHHHHHHHHhh
Q 012884 398 DKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~ 418 (454)
.++++....++.+.++.+...
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 144 VPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred EEeecccCCCHHHHHHHHHHh
Confidence 577888888999998887643
No 73
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=2.6e-16 Score=165.29 Aligned_cols=153 Identities=24% Similarity=0.277 Sum_probs=112.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~ 324 (454)
.+|++||.||||||||+|+|++.+.. +.+++++|++...+.+.+. +..+.+|||||+..... ....+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~~~~ 73 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL--------GREFILIDTGGIEPDDDGFEKQIREQ 73 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC--------CcEEEEEECCCCCCcchhHHHHHHHH
Confidence 46899999999999999999988764 4889999999888877654 24799999999975211 11112334
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Cceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~s 401 (454)
+..+++.+|++|+|+|++.+.+..+... .++++. .++|+++|+||+|+.+..+... .+..++ +.+++
T Consensus 74 ~~~~~~~ad~il~vvd~~~~~~~~~~~~-~~~l~~-----~~~piilv~NK~D~~~~~~~~~----~~~~lg~~~~~~iS 143 (435)
T PRK00093 74 AELAIEEADVILFVVDGRAGLTPADEEI-AKILRK-----SNKPVILVVNKVDGPDEEADAY----EFYSLGLGEPYPIS 143 (435)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHH-HHHHHH-----cCCcEEEEEECccCccchhhHH----HHHhcCCCCCEEEE
Confidence 5667889999999999988765555443 345654 3699999999999765322222 223333 45688
Q ss_pred ccccccHHHHHHHHHh
Q 012884 402 SETELSSEDAVKSLST 417 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~ 417 (454)
+....++.+.++.+..
T Consensus 144 a~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 144 AEHGRGIGDLLDAILE 159 (435)
T ss_pred eeCCCCHHHHHHHHHh
Confidence 8899999999998876
No 74
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.67 E-value=3.8e-16 Score=140.15 Aligned_cols=152 Identities=18% Similarity=0.130 Sum_probs=95.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++.......+.. |.......+... ..++.+|||||..+. ...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~-t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVP-TVGFNVESFEKG--------NLSFTAFDMSGQGKY-------RGLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecC-ccccceEEEEEC--------CEEEEEEECCCCHhh-------HHHHHH
Confidence 3678999999999999999986533333322 221112222211 237899999998542 222344
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhc-CCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----h--cCCce
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY-NPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCDK 399 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~-~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-----~--~g~~~ 399 (454)
+++.+|++++|+|+++..+......+...+... .....++|+++|+||+|+..... .+++.+.+. . ..+.+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEE
Confidence 568899999999999865554443333333221 11113799999999999976422 122322221 1 12457
Q ss_pred ecccccccHHHHHHHHH
Q 012884 400 VTSETELSSEDAVKSLS 416 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~ 416 (454)
+++....++.+.++.++
T Consensus 144 ~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 144 SNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eeCCCCCchHHHHHHHh
Confidence 88899999999998875
No 75
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.67 E-value=3.4e-16 Score=141.82 Aligned_cols=158 Identities=19% Similarity=0.159 Sum_probs=104.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++...+ ....|+.|+.......+..+. ....+.+|||||.... .......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~~~i~D~~g~~~~------~~~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDG------EQVSLEILDTAGQQQA------DTEQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-cccccCCChHHhceEEEEECC------EEEEEEEEECCCCccc------ccchHHH
Confidence 47899999999999999998643 235566655322222222221 0126889999998641 1112345
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa~ 403 (454)
.++.+|++|+|+|+++..+.+.++.|..++..+.....+.|+++|+||+|+...+ +..+.+.+.+. ..+.++++.
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~ 146 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAA 146 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCC
Confidence 6778999999999999877787777777777654322479999999999986432 11222222222 345577888
Q ss_pred cc-ccHHHHHHHHHhhc
Q 012884 404 TE-LSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~-~~~~e~~~~l~~~~ 419 (454)
+. .++.+.++.++...
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 77 48999999988543
No 76
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.67 E-value=4.9e-16 Score=140.07 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=103.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|.+.+. ...+..|+.+.....+..+. ....+.+|||||..+. ......
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~-------~~~~~~ 67 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDG------EVCLLDILDTAGQEEF-------SAMRDQ 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEEEEEECC------EEEEEEEEECCCcccc-------hHHHHH
Confidence 678999999999999999997653 23344444332222222211 0136889999998542 222234
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~~ 404 (454)
+++.+|++++|+|+++..+.+.+..+...+..... ..+.|+++|+||+|+...+.. .+...+.... ..+.++++..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKE 146 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCC
Confidence 56779999999999987777776666555543321 236899999999999753221 1222222223 4467889999
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
..++.+.++.++..+
T Consensus 147 ~~~i~~l~~~l~~~~ 161 (164)
T smart00173 147 RVNVDEAFYDLVREI 161 (164)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987543
No 77
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.67 E-value=3.6e-16 Score=141.97 Aligned_cols=157 Identities=18% Similarity=0.091 Sum_probs=106.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeecc-ceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~-~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|.++|.+|||||||++++.+.+. ...++.|+.... .-.+..+. ...++.+|||||..+ +....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~-------~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNG------QKIKLQIWDTAGQER-------FRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECC------EEEEEEEEECCCcHH-------HHHHH
Confidence 4788999999999999999987642 344554432111 11122211 013689999999743 22233
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
..+++.+|++|+|+|++++.+.+.+..|.+++..+. ..+.|+++|+||+|+....+. .++..+.... ..+.++++
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA 146 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence 456788999999999999877777777776665443 235899999999999764322 1223333333 34678999
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.+..++..+
T Consensus 147 ~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 147 KTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887543
No 78
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=8.2e-16 Score=139.46 Aligned_cols=152 Identities=18% Similarity=0.065 Sum_probs=100.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.+|||||||++++.+.+... .+..|.. +.....+..+. ....+.+|||||..+ +.....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEG------KTILVDFWDTAGQER-------FQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECC------EEEEEEEEeCCCchh-------hhhhhH
Confidence 57899999999999999998764321 1222211 11111111111 013688999999843 222334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceecccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.+++.+|++|+|+|++++.+.++++.|..++..+. .+.|+++|+||+|+.... .++..+.... ..+.++++..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~Sa~~ 142 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPSV--TQKKFNFAEKHNLPLYYVSAAD 142 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchhH--HHHHHHHHHHcCCeEEEEeCCC
Confidence 56788999999999998877777777777776543 368999999999985421 1222222222 3356789999
Q ss_pred cccHHHHHHHHHhh
Q 012884 405 ELSSEDAVKSLSTE 418 (454)
Q Consensus 405 ~~~~~e~~~~l~~~ 418 (454)
..++.+.++.+...
T Consensus 143 ~~gv~~l~~~l~~~ 156 (161)
T cd04124 143 GTNVVKLFQDAIKL 156 (161)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888643
No 79
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=5.4e-16 Score=139.59 Aligned_cols=155 Identities=15% Similarity=0.014 Sum_probs=103.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|.+.+......+..+.+.....+..+. ....+.+|||||+.+. ......
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~l~D~~G~~~~-------~~~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG------KRVKLQIWDTAGQERF-------RSVTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC------EEEEEEEEECcchHHH-------HHhHHH
Confidence 678999999999999999998764332222222222222222221 0136899999998432 122345
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~~ 404 (454)
+++.+|++++|+|+++..+.+.+..|..++..+. ..+.|+++|+||+|+....+. .++....... ..+.++++..
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALT 146 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCC
Confidence 5678999999999999877777777766665443 246899999999999753221 2222223333 4567789999
Q ss_pred cccHHHHHHHHHh
Q 012884 405 ELSSEDAVKSLST 417 (454)
Q Consensus 405 ~~~~~e~~~~l~~ 417 (454)
..++.+.+..+++
T Consensus 147 ~~~i~~~~~~~~~ 159 (161)
T cd04113 147 GENVEEAFLKCAR 159 (161)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998875
No 80
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.66 E-value=6.5e-16 Score=136.31 Aligned_cols=154 Identities=19% Similarity=0.123 Sum_probs=103.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.||||||||+|+|.+.+......+.++.+.....+..+. ....+.+||+||.... ......
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~~ 68 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG------KTVKLQIWDTAGQERF-------RSITPS 68 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC------EEEEEEEEecCChHHH-------HHHHHH
Confidence 578999999999999999998876554334333333333333221 1236899999998432 223445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|++++|+|+++..+.+....|...+..+. ....|+++|+||+|+....+ ..+++.+.... ..+..+++..
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 146 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYA--PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKT 146 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCC
Confidence 5677999999999998766666666666665443 13699999999999962222 22333333333 4566778888
Q ss_pred cccHHHHHHHHH
Q 012884 405 ELSSEDAVKSLS 416 (454)
Q Consensus 405 ~~~~~e~~~~l~ 416 (454)
..++.+.+..++
T Consensus 147 ~~~i~~~~~~i~ 158 (159)
T cd00154 147 GENVEELFQSLA 158 (159)
T ss_pred CCCHHHHHHHHh
Confidence 888888887764
No 81
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=4e-16 Score=145.70 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=106.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|..... ...|+.|+.+.....+..+. ....+.||||||..+. ......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDPTIEDSYRKQVVVDG------QPCMLEVLDTAGQEEY-------TALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchHhhEEEEEEECC------EEEEEEEEECCCchhh-------HHHHHH
Confidence 467999999999999999986543 23455555333222222221 0125889999997432 122334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCChHHHH-HHHHHHHHh--cCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDRL-QSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~-~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~--~g~~~~sa~ 403 (454)
+++.+|++|+|+|+++..+++++..|.+++...... ..+.|+++|+||+|+.+.++.. ++..+.... ..+.++++.
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk 146 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK 146 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCC
Confidence 577899999999999887778877777777654321 2468999999999996532211 111222222 346788999
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
+..++.+.++.+...+.
T Consensus 147 ~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 147 TNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 82
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=1.1e-15 Score=135.88 Aligned_cols=156 Identities=26% Similarity=0.316 Sum_probs=106.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-Ccccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~-~~lg~~f 325 (454)
.|+++|.+|||||||+|+|++.+..+ .+.+.+|.......+... ...+.++||||+....... ..+....
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~~~ 76 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--------DAQIIFVDTPGIHKPKKKLGERMVKAA 76 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--------CeEEEEEECCCCCcchHHHHHHHHHHH
Confidence 57899999999999999999876533 566677766655554432 2378999999986543221 1122234
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc----CCceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~----g~~~~s 401 (454)
...+..+|++++|+|++.+....+ ..+.+.+.. .+.|.++|+||+|+....+...++...+... .+..++
T Consensus 77 ~~~~~~~d~i~~v~d~~~~~~~~~-~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s 150 (168)
T cd04163 77 WSALKDVDLVLFVVDASEPIGEGD-EFILELLKK-----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS 150 (168)
T ss_pred HHHHHhCCEEEEEEECCCccCchH-HHHHHHHHH-----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE
Confidence 556788999999999998633333 333344543 2689999999999985444445544444432 345678
Q ss_pred ccccccHHHHHHHHHh
Q 012884 402 SETELSSEDAVKSLST 417 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~ 417 (454)
+..+.++++.++.+..
T Consensus 151 ~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 151 ALKGENVDELLEEIVK 166 (168)
T ss_pred eccCCChHHHHHHHHh
Confidence 8888888888887764
No 83
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.66 E-value=9e-16 Score=137.05 Aligned_cols=156 Identities=18% Similarity=0.116 Sum_probs=103.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|+|||||+|+|.+.+......+.++.+.....+.... ....+.+|||||..... .+. ..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~~----~~~---~~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG------KRIDLAIWDTAGQERYH----ALG---PI 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC------EEEEEEEEECCchHHHH----Hhh---HH
Confidence 678999999999999999997654322222222222222232211 11368999999975432 111 22
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa~~ 404 (454)
.+..+|++++|+|+++..+.+++..|..++..+... ++|+++|+||+|+...... .+++.+.....+ +.++++.+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT 146 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 346799999999999988788888887777766432 6899999999999753221 223333333333 45788889
Q ss_pred cccHHHHHHHHHhh
Q 012884 405 ELSSEDAVKSLSTE 418 (454)
Q Consensus 405 ~~~~~e~~~~l~~~ 418 (454)
..++.+.++.+...
T Consensus 147 ~~gi~~~~~~l~~~ 160 (162)
T cd04123 147 GKGIEELFLSLAKR 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988753
No 84
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=1.1e-15 Score=138.94 Aligned_cols=158 Identities=15% Similarity=0.045 Sum_probs=103.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||++++.+.+.....++..+.+.....+..+. ....+.||||||..+. .....
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~-------~~~~~ 72 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG------HFVTLQIWDTAGQERF-------RSLRT 72 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC------eEEEEEEEeCCChHHH-------HHhHH
Confidence 5789999999999999999987653222222222222122222221 1136889999997432 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc---CCceec
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVT 401 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~--~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~s 401 (454)
.+++.+|++++|+|+++..+.+.+..|..++..+... ..+.|+++|+||+|+.......+++.+..... .+.+++
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 152 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETS 152 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEE
Confidence 4567899999999999887777777776666543321 23689999999999964322223344333433 356789
Q ss_pred ccccccHHHHHHHHHh
Q 012884 402 SETELSSEDAVKSLST 417 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~ 417 (454)
+.+..++.+.+..+..
T Consensus 153 a~~~~~v~~~~~~~~~ 168 (170)
T cd04116 153 AKDATNVAAAFEEAVR 168 (170)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 8999999999988764
No 85
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.65 E-value=2.6e-16 Score=150.93 Aligned_cols=105 Identities=36% Similarity=0.535 Sum_probs=94.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
|+|++||+|.+||||||..++..+...++|.|||+..+.|++.++. ..|+++|.|||+++|+++++.+++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--------a~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--------ANIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--------ceEEEecCcccccccccCCCCCceEE
Confidence 6899999999999999999999999999999999999999999873 47999999999999999999999999
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcC
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN 361 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~ 361 (454)
...+.+|++++|+|++.. ..+-+.+..||+...
T Consensus 135 avArtaDlilMvLDatk~--e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKS--EDQREILEKELEAVG 167 (364)
T ss_pred EEeecccEEEEEecCCcc--hhHHHHHHHHHHHhc
Confidence 999999999999999864 455567778888643
No 86
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=1.9e-15 Score=141.78 Aligned_cols=155 Identities=23% Similarity=0.230 Sum_probs=101.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc----CCccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GKGLG 322 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~----~~~lg 322 (454)
.+|+++|.+|||||||+|+|++.....+..|++|+++....+ ..+++|||||+...... .+.+.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 77 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDW------------GDFILTDLPGFGFMSGVPKEVQEKIK 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEee------------cceEEEeCCccccccccCHHHHHHHH
Confidence 478999999999999999999987666788899887543221 16899999997321100 01111
Q ss_pred c---hhh-cccccccEEEEEEeCCCCCCH-h---------hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHH
Q 012884 323 R---NFL-RHLRRTRLLVHVIDAAAENPV-N---------DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQS 387 (454)
Q Consensus 323 ~---~fl-~~i~~advll~ViDas~~~~~-~---------d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-e~~~~ 387 (454)
. .++ ..+..++++++|+|++..... + ....+...+.. .++|+++|+||+|+.... +..++
T Consensus 78 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~ 152 (201)
T PRK04213 78 DEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLDE 152 (201)
T ss_pred HHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHHH
Confidence 1 122 245668999999998653111 0 11222233332 379999999999997543 23444
Q ss_pred HHHHHHhc--------CCceecccccccHHHHHHHHHhhc
Q 012884 388 LTEEILKI--------GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 388 l~~~l~~~--------g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.+.+... .+.++++.+. ++.+.++.+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 54444320 2467888999 9999999987544
No 87
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.65 E-value=9.2e-16 Score=137.85 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=101.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|+++|.+|+|||||++++++.... ..+..|. .+.....+.+... ....++.||||||..+. .....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~-------~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQS----DEDVRLMLWDTAGQEEF-------DAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCC----CCEEEEEEeeCCchHHH-------HHhHH
Confidence 6789999999999999999976432 2222222 2222222222210 01237999999997432 22234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
.+++.+|++++|+|++++++.+.+..|..++... ..+.|+++|+||+|+....+. .++........ .+.++++.
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 146 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVK 146 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 5678899999999999877777777666666543 247899999999999753221 12222233333 45678888
Q ss_pred ccccHHHHHHHHHh
Q 012884 404 TELSSEDAVKSLST 417 (454)
Q Consensus 404 ~~~~~~e~~~~l~~ 417 (454)
...++.+.+..++.
T Consensus 147 ~~~~v~~l~~~l~~ 160 (162)
T cd04106 147 DDFNVTELFEYLAE 160 (162)
T ss_pred CCCCHHHHHHHHHH
Confidence 88899999888763
No 88
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=7.9e-16 Score=142.39 Aligned_cols=145 Identities=23% Similarity=0.241 Sum_probs=96.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcCC--CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-----
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----- 318 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~--~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~----- 318 (454)
..+|+++|.+|+|||||+|+|.+.+ ..+++.+++|.+.....++ ..+.+|||||+.......
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~~~ 86 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-----------DGFRLVDLPGYGYAKVSKEEKEK 86 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-----------CcEEEEeCCCCccccCChhHHHH
Confidence 4588999999999999999999875 3457788888876543321 268999999985432110
Q ss_pred -CcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHh
Q 012884 319 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK 394 (454)
Q Consensus 319 -~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~ 394 (454)
..+...+++....++++++|+|++.+....+.+.+ +.+.. .++|+++|+||+|+....+ ..+++++.+..
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~-~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEML-EWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 01112344544567999999999887666665443 44543 3799999999999986432 34555555554
Q ss_pred c----CCceeccccccc
Q 012884 395 I----GCDKVTSETELS 407 (454)
Q Consensus 395 ~----g~~~~sa~~~~~ 407 (454)
. .+..+++.+..+
T Consensus 161 ~~~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 161 DADDPSVQLFSSLKKTG 177 (179)
T ss_pred ccCCCceEEEECCCCCC
Confidence 3 344555555443
No 89
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.65 E-value=1e-15 Score=138.04 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=102.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.||||||||++++...+.. ..+..|+.+.....+..+.. ...+.||||||..+. ......
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~~ 68 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFI-EKYDPTIEDFYRKEIEVDSS------PSVLEILDTAGTEQF-------ASMRDL 68 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCCchhheEEEEEEECCE------EEEEEEEECCCcccc-------cchHHH
Confidence 6789999999999999999875432 22333332222223322210 125889999997432 222333
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH----HHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~----~~~l~~~l~~~g~~~~sa~ 403 (454)
.++.+|++++|+|+++..+.++...|..++..... ..++|+++|+||+|+...... ...+.+.+ ...+.++++.
T Consensus 69 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 146 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAEGRALAEEW-GCPFMETSAK 146 (163)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHHHHHHHHHh-CCEEEEecCC
Confidence 56789999999999998777777777666665421 247999999999998643221 12222211 1345678888
Q ss_pred ccccHHHHHHHHHhh
Q 012884 404 TELSSEDAVKSLSTE 418 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~ 418 (454)
...++.+.+..+...
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (163)
T cd04176 147 SKTMVNELFAEIVRQ 161 (163)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999888743
No 90
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=1.1e-15 Score=136.29 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=108.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+++|++.. ....+..|+.+.....+.... ....+.+||+||..+. ......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG------ETYTLDILDTAGQEEF-------SAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC------EEEEEEEEECCChHHH-------HHHHHH
Confidence 47899999999999999999766 446666676655444444321 0136899999998542 122334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhc--CCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~~--g~~~~sa~~ 404 (454)
.++.+|++++|+|+++..+..+...+...+...... ...|+++|+||+|+..... ..++..+..... .+.++++..
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 145 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKD 145 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCC
Confidence 567899999999999877777776666666543321 3799999999999986322 123333333433 467888888
Q ss_pred cccHHHHHHHHHh
Q 012884 405 ELSSEDAVKSLST 417 (454)
Q Consensus 405 ~~~~~e~~~~l~~ 417 (454)
..++.+.++.+..
T Consensus 146 ~~~i~~l~~~l~~ 158 (160)
T cd00876 146 NINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988864
No 91
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.65 E-value=9.6e-16 Score=140.23 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=100.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|.+... .+ +.+|.......+++. ..++.+|||||..+ +...+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~--------~~~i~l~Dt~G~~~-------~~~~~~~ 62 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYK--------NLKFTIWDVGGKHK-------LRPLWKH 62 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEEC--------CEEEEEEECCCChh-------cchHHHH
Confidence 467899999999999999997632 22 234443333334332 23789999999843 2223445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--h------cCCce
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K------IGCDK 399 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~------~g~~~ 399 (454)
+++.+|++++|+|+++..+..+...+...+... ....+.|++||+||+|+.+... .+++.+.+. . ..+.+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGALS-VEEMTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccCCC-HHHHHHHhCCccccCCCcEEEEe
Confidence 678899999999999876565555444434321 1123589999999999975311 222333221 1 13456
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.++.++..+
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 79999999999999998654
No 92
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.65 E-value=1.4e-15 Score=140.77 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=104.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|.+... ...|..|+.......+..... ....+.||||||..+.. .....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~i~~~~~-----~~~~l~i~Dt~G~~~~~-------~~~~~ 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEYVPTVFENYVTNIQGPNG-----KIIELALWDTAGQEEYD-------RLRPL 68 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCCCCeeeeeeEEEEEecCC-----cEEEEEEEECCCchhHH-------HHHHH
Confidence 678999999999999999997653 234444443333333332210 11368999999974421 11223
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-----HHHHHHHHHHhc---CCc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI---GCD 398 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-----~~~~l~~~l~~~---g~~ 398 (454)
.++.+|++++|+|+++..+++++. .|..++..+. .+.|+++|+||+|+..... ..++..+..... .+.
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 567899999999999887777764 3555555443 3689999999999965320 012222233333 457
Q ss_pred eecccccccHHHHHHHHHhhcCc
Q 012884 399 KVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
++++.+..++.+.+..+...+..
T Consensus 146 e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 146 ECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 88999999999999998876644
No 93
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=1.3e-15 Score=138.44 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=101.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++++.+.. ..|..|+-......+..+. -...+.+|||||..+.. .....
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~~~ 68 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQVISCSK------NICTLQITDTTGSHQFP-------AMQRL 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheEEEEEEECC------EEEEEEEEECCCCCcch-------HHHHH
Confidence 6789999999999999999976532 1222222111111111110 01368999999985421 12223
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCChHHHH-HHHHHHHH--hcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDRL-QSLTEEIL--KIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~-~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~--~~g~~~~sa~ 403 (454)
+++.+|++|+|+|+++..+.+.++.|.+.+..+.. ...+.|+++|+||+|+...++.. ++...... ...+.++++.
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 148 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK 148 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence 56779999999999998888777777776665432 12468999999999997532221 11111222 2356789999
Q ss_pred ccccHHHHHHHHH
Q 012884 404 TELSSEDAVKSLS 416 (454)
Q Consensus 404 ~~~~~~e~~~~l~ 416 (454)
+..++.+.++.+.
T Consensus 149 ~g~~v~~~f~~l~ 161 (165)
T cd04140 149 TNHNVQELFQELL 161 (165)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999876
No 94
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.2e-16 Score=163.45 Aligned_cols=126 Identities=25% Similarity=0.307 Sum_probs=96.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc-CCccc-c
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLG-R 323 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~-~~~lg-~ 323 (454)
.+|+++|+||||||||||+|++.++.| ++.|+||+|.....++.+ +.++.|.||+|+++.... -+.++ .
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~--------G~~v~L~DTAGiRe~~~~~iE~~gI~ 340 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN--------GVPVRLSDTAGIREESNDGIEALGIE 340 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC--------CeEEEEEeccccccccCChhHHHhHH
Confidence 579999999999999999999999987 999999999999998865 348999999999982211 12222 2
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHh-------cCCCCCCCCEEEEEeCCCCCCh
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-------YNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~-------~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+..+.++++|++++|+|+....+.++..+... |.. +.......+++++.||.|+...
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~-l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARI-LETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHH-HHHhccceEEEeccccccceEEEechhhccCc
Confidence 35577899999999999966666666654322 221 2222345899999999999764
No 95
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.64 E-value=1.4e-15 Score=137.83 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=100.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+++|++.+......+..+.+.....+.... ....+.+|||||.... ......
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~-------~~~~~~ 68 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD------KLVTLQIWDTAGQERF-------QSLGVA 68 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC------EEEEEEEEeCCChHHH-------HhHHHH
Confidence 678999999999999999998753221111111122222222221 0136789999997432 122345
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHh-cCC-CCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh---cCCceec
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNP-DYLERPFIVVLNKIDLPEARD-RLQSLTEEILK---IGCDKVT 401 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~-~~~-~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~---~g~~~~s 401 (454)
.++.||++|+|+|++++.+.+.+..|.+++.. ..+ ...++|+++|+||+|+..... ..++....... ..+.+++
T Consensus 69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 148 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEE
Confidence 67889999999999987666666555554332 111 123689999999999973211 12223333333 3467789
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+.+..++.+.+..++...
T Consensus 149 a~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 149 AKEAINVEQAFETIARKA 166 (172)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887544
No 96
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.64 E-value=1.1e-15 Score=137.62 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=95.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+++|...+.. .+ .+|.......+.+. ..++.+|||||..+ +...+..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~~~~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TT-IPTIGFNVETVTYK--------NLKFQVWDLGGQTS-------IRPYWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--Cc-CCccCcCeEEEEEC--------CEEEEEEECCCCHH-------HHHHHHH
Confidence 4789999999999999999765431 22 22333333333322 23789999999843 2233456
Q ss_pred ccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
+++.+|++|+|+|+++....... +.+...++.. ...++|+++|+||+|+.+... ..++.+.+.. ..+.+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 139 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFK 139 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEE
Confidence 67899999999999875433322 2222222221 124799999999999975421 2233333321 12677
Q ss_pred ecccccccHHHHHHHHH
Q 012884 400 VTSETELSSEDAVKSLS 416 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~ 416 (454)
+++....++.+.++.++
T Consensus 140 ~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 140 TSAIKGEGLDEGMDWLV 156 (158)
T ss_pred eeccCCCCHHHHHHHHh
Confidence 89999999999998886
No 97
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.64 E-value=1.1e-15 Score=140.55 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=99.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|+..+.. . ..+|.......+..+ ..++.++||||..+ +...+.
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~--------~~~~~l~D~~G~~~-------~~~~~~ 77 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYK--------NIRFLMWDIGGQES-------LRSSWN 77 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEEC--------CeEEEEEECCCCHH-------HHHHHH
Confidence 47899999999999999999865432 1 123444444444432 23799999999843 333455
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----h--cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-----~--~g~~~ 399 (454)
.+++.||++++|+|+++.............+... ....++|+++|+||+|+..... .+++.+.+. . ..+.+
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~ 155 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGAMT-PAEISESLGLTSIRDHTWHIQG 155 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEe
Confidence 6788999999999999865444443322222211 1234699999999999975311 122333332 1 12467
Q ss_pred ecccccccHHHHHHHHHh
Q 012884 400 VTSETELSSEDAVKSLST 417 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~ 417 (454)
+++....++.+.++.+++
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 888899999999998863
No 98
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.64 E-value=1.9e-15 Score=139.62 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=103.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.+||.+|||||||++++...+. ..+|..|+.+.....+.... . ..++.||||||..+.. ....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~-------~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGG----E--PYTLGLFDTAGQEDYD-------RLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECC----E--EEEEEEEECCCccchh-------hhhh
Confidence 3678999999999999999987543 34555554333222232221 0 1368899999985421 1122
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH----------------HHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ----------------SLT 389 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~----------------~l~ 389 (454)
.+++.+|++|+|+|++++.+.+++. .|..++..+. .+.|+|+|+||+|+.+..+..+ .+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 3567899999999999988888775 4666776543 3689999999999865422111 111
Q ss_pred HHHHhcCCceecccccccHHHHHHHHHh
Q 012884 390 EEILKIGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 390 ~~l~~~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+....+.++++.+..++.+.++.+..
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1222235678999999999999988764
No 99
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=1.8e-15 Score=138.21 Aligned_cols=158 Identities=17% Similarity=0.053 Sum_probs=103.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++++.....-...+..+.+.....+..+. ....+.+|||||..+.. .....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~------~~~~~ 70 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG------ERIKVQLWDTAGQERFR------KSMVQ 70 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC------eEEEEEEEeCCChHHHH------HhhHH
Confidence 4789999999999999999986543211111111222222232221 12378999999974321 01122
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH----HHHHHHHHHhcCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~----~~~l~~~l~~~g~~~~sa 402 (454)
..++.+|++++|+|++++.+.+++..|..++..+... .+.|+++|+||+|+....+. .+++.+.. ...+.++++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa 148 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQVPTDLAQRFADAH-SMPLFETSA 148 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhhcCCCHHHHHHHHHHc-CCcEEEEec
Confidence 3467899999999999988888888888777765322 46899999999998754322 22222222 245677888
Q ss_pred cc---cccHHHHHHHHHhh
Q 012884 403 ET---ELSSEDAVKSLSTE 418 (454)
Q Consensus 403 ~~---~~~~~e~~~~l~~~ 418 (454)
.. ..++.+.+..++..
T Consensus 149 ~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred cCCcCCCCHHHHHHHHHHH
Confidence 87 77888888888743
No 100
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=8.8e-16 Score=170.93 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=113.7
Q ss_pred ccccccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcc
Q 012884 244 NIMRDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL 321 (454)
Q Consensus 244 k~~adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~l 321 (454)
..+..|++||.||||||||+|+|++.+..+ .++|++|++......... +..+.+|||||+..... ....+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~ 344 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--------GTDFKLVDTGGWEADVEGIDSAI 344 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--------CEEEEEEeCCCcCCCCccHHHHH
Confidence 346789999999999999999999887644 889999998877665543 24799999999864211 11122
Q ss_pred cchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Cc
Q 012884 322 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CD 398 (454)
Q Consensus 322 g~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g---~~ 398 (454)
......+++.||++|+|+|++.+....+. .+.+.|+. .++|+|+|+||+|+....... ..+..++ ..
T Consensus 345 ~~~~~~~~~~aD~iL~VvDa~~~~~~~d~-~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~----~~~~~lg~~~~~ 414 (712)
T PRK09518 345 ASQAQIAVSLADAVVFVVDGQVGLTSTDE-RIVRMLRR-----AGKPVVLAVNKIDDQASEYDA----AEFWKLGLGEPY 414 (712)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHh-----cCCCEEEEEECcccccchhhH----HHHHHcCCCCeE
Confidence 33445678899999999999876544443 33455653 479999999999987542221 1222232 34
Q ss_pred eecccccccHHHHHHHHHhhc
Q 012884 399 KVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++++....++.+.++.++..+
T Consensus 415 ~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 415 PISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred EEECCCCCCchHHHHHHHHhc
Confidence 689999999999999988665
No 101
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.63 E-value=1.1e-15 Score=142.24 Aligned_cols=151 Identities=22% Similarity=0.199 Sum_probs=100.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|.+.+.. .+ .+|..+....+... +.++.++||||.... ...+.
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~~~D~~G~~~~-------~~~~~ 79 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIG--------NIKFTTFDLGGHQQA-------RRLWK 79 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence 57899999999999999999976532 22 34555555555432 237899999998432 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------------
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL------------- 393 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~------------- 393 (454)
.+++.+|++++|+|++++...........++... ....++|+++|+||+|+.... ..+++++.+.
T Consensus 80 ~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~-~~~~i~~~l~l~~~~~~~~~~~~ 157 (184)
T smart00178 80 DYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAA-SEDELRYALGLTNTTGSKGKVGV 157 (184)
T ss_pred HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCC-CHHHHHHHcCCCcccccccccCC
Confidence 5678899999999998865444443333333211 123478999999999986431 1233443331
Q ss_pred -hcCCceecccccccHHHHHHHHHh
Q 012884 394 -KIGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 394 -~~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
...+..+++....++.+.++.++.
T Consensus 158 ~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 158 RPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ceeEEEEeecccCCChHHHHHHHHh
Confidence 223567788889999999988863
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=2.5e-15 Score=139.89 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=104.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeecc-ceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~-~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.+|||||||+++|.+.+....+|..|+.... ...+..+. ....+.+|||||..+.. ....
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~-------~~~~ 68 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE------RVVTLGIWDTAGSERYE-------AMSR 68 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECC------EEEEEEEEECCCchhhh-------hhhH
Confidence 6789999999999999999987654445554443221 11232221 01257899999984421 1122
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---H--HHHHHHHHHhc--CCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---R--LQSLTEEILKI--GCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~--~~~l~~~l~~~--g~~~ 399 (454)
..++.+|++++|+|+++..+.+....|..++.... .+.|+++|+||+|+....+ . .+++.+..... .+.+
T Consensus 69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFE 145 (193)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEE
Confidence 34568999999999998777777666666666543 3689999999999864321 0 12233323333 3467
Q ss_pred ecccccccHHHHHHHHHhhcC
Q 012884 400 VTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+++....++.+.++.+.....
T Consensus 146 ~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 146 TSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 888899999999999886663
No 103
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.63 E-value=2.4e-15 Score=140.67 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=102.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCC-------CCccCCCceeeeccceeeeCCCCCC------cccccccEEEecCCCCccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLG------AEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~-------~~Ia~~pfTT~~p~~g~v~~~~~~~------~~~~~~~i~liDTPGii~~ 314 (454)
+|+++|.+|+|||||+++|+... ......+++|++.....+.+..... .......+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 68999999999999999998731 1113345677776655554431000 000124799999999832
Q ss_pred cccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHH
Q 012884 315 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEE 391 (454)
Q Consensus 315 a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~ 391 (454)
+...+...+..+|++++|+|++.+...++.+.+. .... .++|+++|+||+|+....+ ..+++++.
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 148 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKKK 148 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHH
Confidence 3344556667799999999998865555544332 2222 3679999999999975322 23444433
Q ss_pred HHh---------cCCceecccccccHHHHHHHHHh
Q 012884 392 ILK---------IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 392 l~~---------~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
+.. ..+.++++.+..++.+.+..++.
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 221 23567889999999998888874
No 104
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.63 E-value=4.6e-15 Score=137.98 Aligned_cols=158 Identities=22% Similarity=0.194 Sum_probs=107.9
Q ss_pred cccccccccCCCCCHHHHHHHHHcCC--CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC----
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 318 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~--~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~---- 318 (454)
.+.+|+++|.+|||||||+|+|++.+ ..+++.+++|+......+ ..++.||||||+.......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-----------NDKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-----------CCeEEEeCCCCCCCcCCCchHHH
Confidence 35689999999999999999999864 345777888876544332 1379999999975321100
Q ss_pred --CcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHHHH
Q 012884 319 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL 393 (454)
Q Consensus 319 --~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~---~~~l~~~l~ 393 (454)
..+...++++.+.++++++|+|++.+....+.+. ..++.. .++|+++|+||+|+....+. .+.+++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i-~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~ 165 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQM-IEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALK 165 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHH-HHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 1122345566667789999999887655444332 344442 36899999999999864322 233444444
Q ss_pred h--cCCceecccccccHHHHHHHHHhhc
Q 012884 394 K--IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 394 ~--~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
. ..+.++++....++.+.++.+...+
T Consensus 166 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 166 FGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred hcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3 4566788888999999998887544
No 105
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=2.3e-15 Score=134.83 Aligned_cols=157 Identities=17% Similarity=0.089 Sum_probs=102.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.||||||||+++|+.... ..++..|+.+.....+..+. ....+.+|||||..+. ......
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~i~D~~g~~~~-------~~~~~~ 67 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG------EDVQLNILDTAGQEDY-------AAIRDN 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECC------EEEEEEEEECCChhhh-------hHHHHH
Confidence 678999999999999999996543 24555555443333332221 1236899999998543 112233
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-e~~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|.+++|+|++++.+.+....+...+..... ..++|+++|+||+|+.... ...++....... ..+.++++.+
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKT 146 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCC
Confidence 55678999999999887666555555554443321 2479999999999997621 112222222232 3467889999
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
..++.+.++.++..+
T Consensus 147 ~~gi~~l~~~l~~~~ 161 (164)
T cd04139 147 RQNVEKAFYDLVREI 161 (164)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887543
No 106
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.63 E-value=2e-15 Score=137.59 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=103.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.||||||||++++.+... ...+..|+.+.....+..+. ....+.+|||||+.+. ......
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~~ 68 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDG------RQCDLEILDTAGTEQF-------TAMREL 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECC------EEEEEEEEeCCCcccc-------hhhhHH
Confidence 578999999999999999986542 33444444332222222221 1236889999998543 222223
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH----HHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~----~~~l~~~l~~~g~~~~sa~ 403 (454)
.++.++.+++|+|++++.+.+....+..++.... ...+.|+++|+||+|+...+.. ...+.+.+....+.++++.
T Consensus 69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCC
Confidence 4567999999999998877777776666665422 1247999999999999754321 1222222222346789999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.++..+
T Consensus 148 ~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 148 KRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987543
No 107
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.63 E-value=4.7e-15 Score=135.95 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=99.6
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCccC----------------CCceeeeccceeeeCCCCCCcccccccEEEecCCCCc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 312 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia~----------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii 312 (454)
|+++|.+|||||||+|+|++....... ..++|.+.....+... ...+.|+||||+.
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~~ 73 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--------DRRVNFIDTPGHE 73 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------CEEEEEEeCCCcH
Confidence 689999999999999999887554321 1233444333333322 2479999999984
Q ss_pred cccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHH
Q 012884 313 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLT 389 (454)
Q Consensus 313 ~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~ 389 (454)
+ +...+..+++.+|++++|+|++.+...+..+.+. .+.. .++|+++|+||+|+....+ ..+.+.
T Consensus 74 ~-------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~~ 140 (189)
T cd00881 74 D-------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLR-IARE-----GGLPIIVAINKIDRVGEEDLEEVLREIK 140 (189)
T ss_pred H-------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHH-HHHH-----CCCCeEEEEECCCCcchhcHHHHHHHHH
Confidence 3 2234556677899999999998866555444433 3332 4799999999999986322 233344
Q ss_pred HHHHh----------------cCCceecccccccHHHHHHHHHhhc
Q 012884 390 EEILK----------------IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 390 ~~l~~----------------~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.+.. ..+.++++....++.+.+..++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 141 ELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 44433 2234567778888888888887543
No 108
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.63 E-value=1.6e-15 Score=138.85 Aligned_cols=149 Identities=22% Similarity=0.240 Sum_probs=97.1
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 328 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~ 328 (454)
|.++|.+|||||||+++|.+... ..+ ..|.......+... ...+.++||||..+ +...+..+
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~--~~~-~~t~g~~~~~~~~~--------~~~~~i~D~~G~~~-------~~~~~~~~ 63 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIP--KKV-APTVGFTPTKLRLD--------KYEVCIFDLGGGAN-------FRGIWVNY 63 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC--ccc-cCcccceEEEEEEC--------CEEEEEEECCCcHH-------HHHHHHHH
Confidence 57899999999999999997622 222 22222222333332 23789999999743 22345677
Q ss_pred cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHH-----HH-h----cCCc
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-----IL-K----IGCD 398 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~-----l~-~----~g~~ 398 (454)
++.||++++|+|+++....++...+...+.... ...++|+++|+||+|+.+.... .++.+. +. + ..+.
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNALLG-ADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCCCCH-HHHHHhcCcccccCCCCceEEEE
Confidence 899999999999998766666665555554321 2347999999999999765321 122211 11 1 1234
Q ss_pred eeccccc------ccHHHHHHHHHh
Q 012884 399 KVTSETE------LSSEDAVKSLST 417 (454)
Q Consensus 399 ~~sa~~~------~~~~e~~~~l~~ 417 (454)
.+++.+. .++.+.++++++
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 4677776 789999999864
No 109
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.3e-15 Score=139.85 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=118.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceee--eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~--~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~ 323 (454)
+-+|-+||-.|||||.|+.++...... ..| .+|+ |.....+.++.. ..+++||||+|+ +++..
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~-e~~-~sTIGVDf~~rt~e~~gk------~iKlQIWDTAGQ-------ERFrt 73 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFT-ESY-ISTIGVDFKIRTVELDGK------TIKLQIWDTAGQ-------ERFRT 73 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcc-hhh-cceeeeEEEEEEeeecce------EEEEEeeecccc-------HHHhh
Confidence 457779999999999999999864321 111 2333 333334444322 248999999999 44556
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-HhcC---Cce
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIG---CDK 399 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l-~~~g---~~~ 399 (454)
.+..+++.|+.||+|+|++...+++.+..|.+|++.|.. .+.|.++|+||+|+.+......+..+.+ .+.+ +.+
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~E 151 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLE 151 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceee
Confidence 677889999999999999999999999999999998873 3689999999999987654433333333 2333 668
Q ss_pred ecccccccHHHHHHHHHhhcCc
Q 012884 400 VTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
+++....+++++|..|+..+..
T Consensus 152 TSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 152 TSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred cccCCccCHHHHHHHHHHHHHH
Confidence 9999999999999999877744
No 110
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.63 E-value=3.1e-15 Score=135.78 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=103.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeee--ccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~--p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
+|.++|.+|||||||++++.+.+.. ..+ .+|.. .....+.... ....+.+|||||..+. ....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~-~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~-------~~~~ 66 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSH-ISTIGVDFKMKTIEVDG------IKVRIQIWDTAGQERY-------QTIT 66 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCC-CCceeeEEEEEEEEECC------EEEEEEEEeCCCcHhH-------HhhH
Confidence 5789999999999999999875432 222 22322 2222333221 0136889999997432 1223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~s 401 (454)
..+++.+|++++|+|+++..+.+++..|.+++..+. ..+.|+++|+||+|+.+.+. ....+.+.+. ..+.+++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~S 143 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETS 143 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEe
Confidence 345678999999999999888888877777776543 23689999999999975432 2223332222 4577899
Q ss_pred ccccccHHHHHHHHHh
Q 012884 402 SETELSSEDAVKSLST 417 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~ 417 (454)
+.+..++.+.++.+..
T Consensus 144 a~~~~~v~~~f~~l~~ 159 (161)
T cd04117 144 ACTNSNIKESFTRLTE 159 (161)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998874
No 111
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.63 E-value=2.8e-15 Score=137.59 Aligned_cols=164 Identities=16% Similarity=0.037 Sum_probs=103.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCC----CcccccccEEEecCCCCccccccCCccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGKGLG 322 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~----~~~~~~~~i~liDTPGii~~a~~~~~lg 322 (454)
.+|.++|.+|||||||++++.+.+..-...+..+.+.....+.+.... ........+.||||||..+. .
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~ 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF-------R 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------H
Confidence 478899999999999999998764321111111112221222221100 00001236899999997432 2
Q ss_pred chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCce
Q 012884 323 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDK 399 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~ 399 (454)
......++.+|++|+|+|+++..+.+++..|..++..+.. ..+.|+++|+||+|+.+.+.. .++..+.... ..+.+
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 156 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFE 156 (180)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEE
Confidence 2233456789999999999988777777777776664321 136789999999999753221 1222222223 34578
Q ss_pred ecccccccHHHHHHHHHhh
Q 012884 400 VTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~ 418 (454)
+++....++.+.++.+...
T Consensus 157 ~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 157 TSAATGTNVEKAVERLLDL 175 (180)
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 8999999999999988743
No 112
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=2.2e-15 Score=138.27 Aligned_cols=157 Identities=18% Similarity=0.060 Sum_probs=101.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeecc-ceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~-~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
..+|.++|.+|||||||++++.+....+.+|..|+.... ...+..+.. ...+.+|||+|..+. ...
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~------~~~l~~~d~~g~~~~-------~~~ 70 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ------EKYLILREVGEDEVA-------ILL 70 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe------EEEEEEEecCCcccc-------ccc
Confidence 357889999999999999999986644355655553221 122332211 136889999998542 122
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH----HHHHHHHHHhcCCcee
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKV 400 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~----~~~l~~~l~~~g~~~~ 400 (454)
...+++.||++|+|+|++++.+.+.+..|.+.+.. ..+.|+++|+||+|+.+..+. .+++.+.+....+.++
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHF 146 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEE
Confidence 33456889999999999886555444444333321 236899999999999654321 2233222221124678
Q ss_pred cccccccHHHHHHHHHhhc
Q 012884 401 TSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~ 419 (454)
++.+..++.+.++.+.+.+
T Consensus 147 Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 147 SSKLGDSSNELFTKLATAA 165 (169)
T ss_pred EeccCccHHHHHHHHHHHh
Confidence 9999999999998887543
No 113
>PLN03110 Rab GTPase; Provisional
Probab=99.63 E-value=2e-15 Score=144.51 Aligned_cols=159 Identities=15% Similarity=0.059 Sum_probs=109.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|.+||.+|||||||+++|++.+......+....+.....+..+.. ...+.||||||..+ +...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~------~~~l~l~Dt~G~~~-------~~~~~ 78 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK------TVKAQIWDTAGQER-------YRAIT 78 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE------EEEEEEEECCCcHH-------HHHHH
Confidence 358899999999999999999987654333333333333333433211 13789999999743 22234
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~---~~g~~~~sa 402 (454)
..+++.++++|+|+|+++..+++.+..|...+..+. ..+.|+++|+||+|+....+..++....+. ...+.++++
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA 156 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA--DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSA 156 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 456788999999999998888888877777776543 236899999999998653322122222222 245678899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.+...+
T Consensus 157 ~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 157 LEATNVEKAFQTILLEI 173 (216)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987666
No 114
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=1.8e-15 Score=140.40 Aligned_cols=151 Identities=24% Similarity=0.243 Sum_probs=102.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|.+.+.. . ..+|..+..+.+.++ +..+.++||||..+. ...+.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~--------~~~~~l~D~~G~~~~-------~~~~~ 81 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIG--------NIKFKTFDLGGHEQA-------RRLWK 81 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence 57899999999999999999976542 2 233555666666543 237899999997432 12345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh------------
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------------ 394 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~------------ 394 (454)
.+++.+|++++|+|+++..+.+....+..++... ....+.|+++|+||+|+.... ..+++++.+..
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAV-SEEELRQALGLYGTTTGKGVSLK 159 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCc-CHHHHHHHhCccccccccccccc
Confidence 5678899999999998765444333333333221 123469999999999997531 12344443321
Q ss_pred ------cCCceecccccccHHHHHHHHHh
Q 012884 395 ------IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 395 ------~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+.++++.+..++.+.+++++.
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred ccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 23577899999999999999874
No 115
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=2.4e-15 Score=134.99 Aligned_cols=149 Identities=18% Similarity=0.184 Sum_probs=97.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++++.+.. .+ .+|.......+.+. ...+.+|||||..+. ...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~D~~G~~~~-------~~~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--TT-IPTIGFNVETVEYK--------NVSFTVWDVGGQDKI-------RPLWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCcCcceEEEEEC--------CEEEEEEECCCChhh-------HHHHHH
Confidence 5789999999999999999987621 11 22222233333332 137999999998542 223344
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCcee
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV 400 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-------~~g~~~~ 400 (454)
.+..+|++++|+|++.+........+...+.... ...+.|+++|+||+|+.... ..+++.+.+. ...+.++
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 140 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPC 140 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEe
Confidence 5678999999999998755555443333332211 13479999999999998643 1223333322 1235678
Q ss_pred cccccccHHHHHHHHH
Q 012884 401 TSETELSSEDAVKSLS 416 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~ 416 (454)
++....++.+.++.+.
T Consensus 141 Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 141 SAVTGDGLDEGLDWLL 156 (158)
T ss_pred eCCCCCCHHHHHHHHh
Confidence 8889999999988875
No 116
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.62 E-value=1.8e-15 Score=138.62 Aligned_cols=150 Identities=20% Similarity=0.202 Sum_probs=97.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||+++|.+... ..+. +|.......+.++ ...+.+|||||... +...+.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~-~t~g~~~~~~~~~--------~~~l~l~D~~G~~~-------~~~~~~ 76 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--DTIS-PTLGFQIKTLEYE--------GYKLNIWDVGGQKT-------LRPYWR 76 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcC-CccccceEEEEEC--------CEEEEEEECCCCHH-------HHHHHH
Confidence 4688999999999999999997632 2221 1211112222222 13789999999843 222344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-------~~g~~~ 399 (454)
.+++.+|++++|+|+++..+.++...+...+... ....+.|+++|+||+|+.+.. ..+++.+.+. ...+.+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEe
Confidence 5678899999999999876555554443333221 112479999999999997532 1233333332 234678
Q ss_pred ecccccccHHHHHHHHH
Q 012884 400 VTSETELSSEDAVKSLS 416 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~ 416 (454)
+++.+..++.+.++.+.
T Consensus 155 ~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 155 CSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccCCCCcCHHHHHHHHh
Confidence 89999999999998875
No 117
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.62 E-value=4.2e-15 Score=138.21 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=106.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+++|||||+.++...+. ..+|..|..+.....+..+. ...++.||||+|..+. .....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~~------~~v~l~i~Dt~G~~~~-------~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVSVDG------NTVNLGLWDTAGQEDY-------NRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeEEEEEECC------EEEEEEEEECCCCccc-------cccch
Confidence 3678999999999999999997543 23444443322222222221 1237899999998543 22223
Q ss_pred cccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----------H-HHHHHHHHHh
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------R-LQSLTEEILK 394 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----------~-~~~l~~~l~~ 394 (454)
.+++.+|++|+|+|+++..+++.+ +.|..++..+. .+.|++||+||+||.+.+. . .++..+....
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 467889999999999999888887 56777777654 3689999999999964321 1 1222222222
Q ss_pred c---CCceecccccccHHHHHHHHHhhc
Q 012884 395 I---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 395 ~---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
. .+.++++.+..++++.|..+...+
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 2 367899999999999999988654
No 118
>PTZ00369 Ras-like protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=141.30 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=105.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||++++.+.+. ...|..|+.......+..+.. ...+.+|||||..+. .....
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~l~~ 71 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF-IDEYDPTIEDSYRKQCVIDEE------TCLLDILDTAGQEEY-------SAMRD 71 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCchhhEEEEEEEECCE------EEEEEEEeCCCCccc-------hhhHH
Confidence 4788999999999999999997643 223333332222222222210 136889999998543 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
.+++.+|++++|+|+++..+.+++..|..++..+.. ..+.|+++|+||+|+...... .++..+.... ..+.++++.
T Consensus 72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak 150 (189)
T PTZ00369 72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAK 150 (189)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCC
Confidence 456789999999999998887888777777765432 236899999999998653211 1112222222 345688999
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
+..++.+.+..++..+.
T Consensus 151 ~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 151 QRVNVDEAFYELVREIR 167 (189)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999986663
No 119
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.62 E-value=3.6e-15 Score=136.30 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=102.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++...... ..+. +|.......+.+... .....+.+|||||+.+.. .+ ...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~----~~~~~l~i~Dt~G~~~~~----~~---~~~ 68 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLDFHTN----RGKIRFNVWDTAGQEKFG----GL---RDG 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCC-CceeeEEEEEEEEEC----CEEEEEEEEECCCChhhc----cc---cHH
Confidence 6789999999999999999854321 2222 222111111111100 012378999999985421 11 123
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCceeccccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSETE 405 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~~sa~~~ 405 (454)
++..+|++|+|+|+++..+.+.+..|..++..+. .+.|+++|+||+|+...... .+..+... ...+.++++...
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~e~Sa~~~ 144 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---GNIPIVLCGNKVDIKDRKVK-AKQITFHRKKNLQYYEISAKSN 144 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhcccccCC-HHHHHHHHHcCCEEEEEeCCCC
Confidence 4567999999999999887877777777777654 27999999999999743211 11112222 235788999999
Q ss_pred ccHHHHHHHHHhhc
Q 012884 406 LSSEDAVKSLSTEG 419 (454)
Q Consensus 406 ~~~~e~~~~l~~~~ 419 (454)
.++++.+..++..+
T Consensus 145 ~~v~~~f~~l~~~~ 158 (166)
T cd00877 145 YNFEKPFLWLARKL 158 (166)
T ss_pred CChHHHHHHHHHHH
Confidence 99999999998654
No 120
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=2.7e-15 Score=167.46 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=107.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC--cccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~--~lg~~f 325 (454)
+|+++|.||||||||+|+|++.+..++++|++|.+...+.+.+. +.++.++||||+.+-..... .+....
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--------~~~i~lvDtPG~ysl~~~~~~~s~~E~i 76 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--------DHQVTLVDLPGTYSLTTISSQTSLDEQI 76 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--------ceEEEEEECCCccccccccccccHHHHH
Confidence 68999999999999999999998888999999999988888654 24799999999976432111 112111
Q ss_pred h-cc--cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--cee
Q 012884 326 L-RH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKV 400 (454)
Q Consensus 326 l-~~--i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~--~~~ 400 (454)
. .+ .+.+|++++|+|+++.+ .+... ..++.+ .++|+++|+||+|+.+.+....++.+.-+.++. .++
T Consensus 77 ~~~~l~~~~aD~vI~VvDat~le--r~l~l-~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 77 ACHYILSGDADLLINVVDASNLE--RNLYL-TLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPL 148 (772)
T ss_pred HHHHHhccCCCEEEEEecCCcch--hhHHH-HHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEE
Confidence 1 11 25799999999998743 33333 334443 479999999999987543322223222233444 466
Q ss_pred cccccccHHHHHHHHHhh
Q 012884 401 TSETELSSEDAVKSLSTE 418 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~ 418 (454)
++....++.+..+.+...
T Consensus 149 SA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRH 166 (772)
T ss_pred EeecCCCHHHHHHHHHHh
Confidence 777788888877766543
No 121
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.62 E-value=2.9e-15 Score=140.93 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=109.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCce-eeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfT-T~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
+.+|.++|.++||||||+.++..... ..+|+.| +.+-....+..+. ....+.||||||..+. ...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~------~~~~l~iwDt~G~~~~-------~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDG------RRVKLQLWDTSGQGRF-------CTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECC------EEEEEEEEeCCCcHHH-------HHH
Confidence 35788999999999999999987532 2333222 1222122232221 0137899999998432 223
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~s 401 (454)
+..+++.+|++|+|+|++++.+.+.++.|.+++..+. .+.|+|||+||+||...++. .++.++.... ..+.+++
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~S 148 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVS 148 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEec
Confidence 3456689999999999999999999988888887654 36899999999999653221 2223333333 3578899
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+.+..++.+.|+.+++..
T Consensus 149 Ak~g~~V~~~F~~l~~~i 166 (189)
T cd04121 149 PLCNFNITESFTELARIV 166 (189)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998655
No 122
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.2e-15 Score=164.15 Aligned_cols=153 Identities=25% Similarity=0.331 Sum_probs=113.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccc--cccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG--AHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~--a~~~~~lg~~f 325 (454)
+||++|.||+|||||+|+|++++..+++||++|.+...|.+.+. ++++.++|+||+..- .+.++.+.++|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~--------~~~i~ivDLPG~YSL~~~S~DE~Var~~ 76 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK--------GHEIEIVDLPGTYSLTAYSEDEKVARDF 76 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec--------CceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence 58999999999999999999999999999999999999999875 347999999999752 23344455555
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--ceeccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSE 403 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~--~~~sa~ 403 (454)
+.. ++.|++|.|+|+++- +..+....+.++ .++|+++++|++|..+.+...-+..+.-+.+|+ .++++.
T Consensus 77 ll~-~~~D~ivnVvDAtnL--eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~ 147 (653)
T COG0370 77 LLE-GKPDLIVNVVDATNL--ERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAK 147 (653)
T ss_pred Hhc-CCCCEEEEEcccchH--HHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEee
Confidence 542 568999999999864 455555555555 589999999999987643222222222333454 456777
Q ss_pred ccccHHHHHHHHHh
Q 012884 404 TELSSEDAVKSLST 417 (454)
Q Consensus 404 ~~~~~~e~~~~l~~ 417 (454)
...++++....+..
T Consensus 148 ~g~G~~~l~~~i~~ 161 (653)
T COG0370 148 RGEGLEELKRAIIE 161 (653)
T ss_pred cCCCHHHHHHHHHH
Confidence 78888887776653
No 123
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.62 E-value=3.2e-15 Score=140.87 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=105.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|.++|.+|||||||+++|.+.+.. ..|..|. .+.....+.... ....+.||||||... +....
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~l~l~D~~G~~~-------~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEING------ERVKLQIWDTAGQER-------FRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECC------EEEEEEEEeCCCchh-------HHHHH
Confidence 47889999999999999999876432 2222111 122222222211 013688999999743 22234
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~--~g~~~~sa 402 (454)
..+++.++++++|+|+++..+.+++..|.+++..+. ...|++||+||+|+....... ++....... ..+.++++
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 149 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSA 149 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 456778999999999999877777777777666543 368999999999997642221 222222222 34678899
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
....++.+.++.+....-
T Consensus 150 ~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 150 KENINVEEMFNCITELVL 167 (199)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999887663
No 124
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.62 E-value=6.4e-15 Score=128.90 Aligned_cols=154 Identities=29% Similarity=0.308 Sum_probs=106.3
Q ss_pred cccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhccc
Q 012884 251 DKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 329 (454)
Q Consensus 251 lVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i 329 (454)
++|.+|+|||||+|+|++.... +.+++.+|.......+.... ...+.++||||+.+...........+...+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-------LGPVVLIDTPGIDEAGGLGREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-------CCcEEEEECCCCCccccchhhHHHHHHHHH
Confidence 5799999999999999988765 57788888877766655431 237999999999776544332223445567
Q ss_pred ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH---H---HHHHhcCCceeccc
Q 012884 330 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL---T---EEILKIGCDKVTSE 403 (454)
Q Consensus 330 ~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l---~---~~l~~~g~~~~sa~ 403 (454)
..+|++++|+|++......... +...... .+.|+++|+||+|+....+..... . .......+...++.
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeee
Confidence 8899999999999876655544 2222322 479999999999998754332221 1 11112345556777
Q ss_pred ccccHHHHHHHHHh
Q 012884 404 TELSSEDAVKSLST 417 (454)
Q Consensus 404 ~~~~~~e~~~~l~~ 417 (454)
...++++.+..+..
T Consensus 148 ~~~~v~~l~~~l~~ 161 (163)
T cd00880 148 TGEGIDELREALIE 161 (163)
T ss_pred ccCCHHHHHHHHHh
Confidence 77788888777653
No 125
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=5e-15 Score=134.82 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=100.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+++|.+.+. ...++.+ .....-...+.. ...++.+|||||..+. ...+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVPRV-LPEITIPADVTP------ERVPTTIVDTSSRPQD-------RANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCCCc-ccceEeeeeecC------CeEEEEEEeCCCchhh-------hHHHhh
Confidence 678999999999999999987653 2334432 211111111111 1237899999998432 123445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH------HHHHHHHHHhc-CCce
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------LQSLTEEILKI-GCDK 399 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~------~~~l~~~l~~~-g~~~ 399 (454)
.+..+|++++|+|++++.+.+++. .|..+++.+. .+.|+++|+||+|+.+..+. ...+...+... .+.+
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVE 143 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEE
Confidence 578899999999999877777653 4555565443 36899999999999764321 11222233332 5678
Q ss_pred ecccccccHHHHHHHHHh
Q 012884 400 VTSETELSSEDAVKSLST 417 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~ 417 (454)
+++.+..++.+.++.+.+
T Consensus 144 ~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 144 CSAKTLINVSEVFYYAQK 161 (166)
T ss_pred eccccccCHHHHHHHHHH
Confidence 899999999999987764
No 126
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=3.9e-15 Score=142.03 Aligned_cols=158 Identities=20% Similarity=0.117 Sum_probs=106.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++.+......+.++.+.....+..... ....+.+|||||.... ......
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~-----~~~~l~i~Dt~G~~~~-------~~~~~~ 71 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPG-----VRIKLQLWDTAGQERF-------RSITRS 71 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCC-----CEEEEEEEeCCcchhH-------HHHHHH
Confidence 6789999999999999999986543322222222322223322110 1136899999997432 222345
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa~ 403 (454)
+++.+|++|+|+|++++.+.+++..|..++..+.. ....|++||+||+|+....+ ..+.+.+.+. ..+.++++.
T Consensus 72 ~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak 149 (211)
T cd04111 72 YYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSAR 149 (211)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCC
Confidence 67889999999999998777777777776654421 23567899999999975322 2233333322 457788999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
+..++.+.++.++...
T Consensus 150 ~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 150 TGDNVEEAFELLTQEI 165 (211)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988655
No 127
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.62 E-value=3.9e-15 Score=133.91 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=100.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc--cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I--a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
+|.++|.+|||||||+|+|++.+... .+..+.+... ..+.++. ....+.+|||||..+. ....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~v~~~~------~~~~~~i~D~~G~~~~-------~~~~ 67 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLT--QTVNLDD------TTVKFEIWDTAGQERY-------RSLA 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECC------EEEEEEEEeCCchHHH-------HHHH
Confidence 67899999999999999999876432 1222211111 1222221 1237899999997432 1112
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~--~g~~~~sa 402 (454)
...++.+|++++|+|++++.+.+....|..++.... ....|+++|+||+|+....+ ..++..+.... ..+.++++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA--SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSA 145 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEEC
Confidence 235677999999999998776777666666665432 14689999999999874321 12233333333 34677888
Q ss_pred cccccHHHHHHHHHhh
Q 012884 403 ETELSSEDAVKSLSTE 418 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~ 418 (454)
....++.+.++.++..
T Consensus 146 ~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 146 KTGENVNELFTEIAKK 161 (163)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8899999999888743
No 128
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=3.9e-15 Score=138.40 Aligned_cols=157 Identities=15% Similarity=0.014 Sum_probs=104.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++........+..+.+.....+..+.. ...+.+|||||..+. ......
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~g~~~~-------~~~~~~ 68 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK------IIKLQIWDTNGQERF-------RSLNNS 68 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE------EEEEEEEECCCcHHH-------HhhHHH
Confidence 6789999999999999999976542211122122222222322210 136889999997432 223445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|++++|+|++++.+.+.+..|..++..+.. ...|+++|+||+|+.+..... ++....... ..+.++++..
T Consensus 69 ~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 146 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQ 146 (188)
T ss_pred HccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 67889999999999998878887777777776542 258999999999997532211 111222222 3467889999
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
..++.+.++.++...
T Consensus 147 ~~~i~~~f~~l~~~~ 161 (188)
T cd04125 147 SINVEEAFILLVKLI 161 (188)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887665
No 129
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.62 E-value=3.1e-15 Score=137.82 Aligned_cols=156 Identities=15% Similarity=0.056 Sum_probs=104.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||++++...+.. ..+..|+.+.....+..+. ....+.||||||..+. ......
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~l~~~ 69 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDN------EPALLDILDTAGQAEF-------TAMRDQ 69 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECC------EEEEEEEEeCCCchhh-------HHHhHH
Confidence 6789999999999999999865432 2233232211111222221 0136899999998543 222334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~sa~ 403 (454)
+++.+|++++|+|+++..+.+....|...+..... ..+.|+++|+||+|+.+.++ ..+.+.+.+ ...+.++++.
T Consensus 70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sa~ 147 (172)
T cd04141 70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPFFETSAA 147 (172)
T ss_pred HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEEEEEecC
Confidence 56789999999999998888888777666665321 23689999999999865322 222232222 2456788999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.++..+
T Consensus 148 ~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 148 LRHYIDDAFHGLVREI 163 (172)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998655
No 130
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=4.3e-15 Score=139.73 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=105.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|+..+.. ..|..|+.+.....+.+.. ....+.||||||..+.. .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~-------~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGG------VSLTLDILDTSGSYSFP-------AMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECC------EEEEEEEEECCCchhhh-------HHHHH
Confidence 4789999999999999999876532 3444454333333333221 01368899999985431 11123
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-HHH-HHHHHHHHH-h--cCCceecc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDR-LQSLTEEIL-K--IGCDKVTS 402 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~-~e~-~~~l~~~l~-~--~g~~~~sa 402 (454)
.+..+|++|+|+|+++..+.++...+..++..+... .++|+++|+||+|+... ... .+...+... . ..+.++++
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 145 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA 145 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence 567899999999999887777777776666654322 46999999999999653 111 111222221 2 34567899
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
.+..++.+.++.+...+.
T Consensus 146 ~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 146 KDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999887654
No 131
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.61 E-value=3.3e-15 Score=135.59 Aligned_cols=149 Identities=18% Similarity=0.170 Sum_probs=95.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++...+.. .+. +|.......+.+. ..++.+|||||+.+ +...+..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~-pt~g~~~~~~~~~--------~~~~~l~D~~G~~~-------~~~~~~~ 63 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVEYK--------NISFTVWDVGGQDK-------IRPLWRH 63 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccC-CCCCcceEEEEEC--------CEEEEEEECCCCHh-------HHHHHHH
Confidence 5789999999999999999654321 222 2222222223322 23789999999843 2223445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----hc--CCcee
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GCDKV 400 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-----~~--g~~~~ 400 (454)
+++.||++|+|+|+++..+.++...+..++... ......|+++|+||+|+.+... .+++.+.+. .. .+.++
T Consensus 64 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQAT 141 (159)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEe
Confidence 678999999999999866555554433333211 1123689999999999975321 122333321 11 13467
Q ss_pred cccccccHHHHHHHHH
Q 012884 401 TSETELSSEDAVKSLS 416 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~ 416 (454)
++.+..++.+.++.++
T Consensus 142 Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 142 CATSGDGLYEGLDWLS 157 (159)
T ss_pred eCCCCCCHHHHHHHHh
Confidence 9999999999998876
No 132
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=6.1e-15 Score=135.55 Aligned_cols=157 Identities=13% Similarity=0.021 Sum_probs=102.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.+||.+|||||||++++.+... ...|..|+ .+.....+.... ....+.||||||..+. .....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILG------VPFSLQLWDTAGQERF-------KCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECC------EEEEEEEEeCCChHHH-------HhhHH
Confidence 678999999999999999997643 23443332 222222332221 1237899999998442 22234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH--HH-HHHHHHHhc--CCceec
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR--LQ-SLTEEILKI--GCDKVT 401 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~--~~-~l~~~l~~~--g~~~~s 401 (454)
.+++.+|++++|+|+++..+.+....|..++..... ....|+++|+||+|+.+..+. .+ +......+. .+.+++
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~S 146 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVS 146 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEE
Confidence 557889999999999987667777666666543321 124678999999998654221 11 122222222 346889
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+.+..++.+.+..+.+.+
T Consensus 147 a~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 147 ALSGENVREFFFRVAALT 164 (170)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887654
No 133
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=5.1e-15 Score=138.26 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=103.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||++++...... ..|..|..+.....+..+. ....+.||||||..+.. .+ ...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~~~----~l---~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDG------LHIELSLWDTAGQEEFD----RL---RSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECC------EEEEEEEEECCCChhcc----cc---ccc
Confidence 6789999999999999999876432 2233232222222222211 11368999999984421 11 123
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEIL 393 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-------------~~l~~~l~ 393 (454)
+++.+|++++|+|+++..+++... .|..++..+. .+.|+++|+||+|+.+..+.. ++..+...
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK 144 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 467899999999999987777664 3555665443 468999999999997653211 11112222
Q ss_pred h---cCCceecccccccHHHHHHHHHhhcCc
Q 012884 394 K---IGCDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 394 ~---~g~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
. ..+.++++.+..++.+.|..+...+..
T Consensus 145 ~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 145 RINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 2 346789999999999999999876654
No 134
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.61 E-value=6.7e-15 Score=134.15 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=100.1
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 328 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~ 328 (454)
|.++|.+|||||||++++.+... ...|..|+.+.....+..+. ....+.+|||||..+... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~-------~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDG------KPVELGLWDTAGQEDYDR-------LRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECC------EEEEEEEEECCCCcccch-------hchhh
Confidence 46899999999999999987543 23333333332222232221 013689999999854321 12234
Q ss_pred cccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH----------------HHHHHH
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL----------------QSLTEE 391 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~----------------~~l~~~ 391 (454)
++.+|++|+|+|+++..+.+.+. .|...+..+. .+.|+++|+||+|+....... +.+.+.
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 67899999999999877777664 4556665543 479999999999997532211 112222
Q ss_pred HHhcCCceecccccccHHHHHHHHHhhc
Q 012884 392 ILKIGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 392 l~~~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+....+.++++.+..++.+.+..+....
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 2222457789999999999998887543
No 135
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=5.3e-15 Score=140.49 Aligned_cols=159 Identities=17% Similarity=0.097 Sum_probs=103.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|.++|.+|||||||+++|++.... .+..|+ .+.....+..+.. ...+.||||||+.+. ....
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~~-------~~~~ 79 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGGK------RLKLTIWDTAGQERF-------RTLT 79 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECCE------EEEEEEEECCCchhh-------HHHH
Confidence 47889999999999999999976542 222121 1111222222210 136899999998543 2223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~-l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~s 401 (454)
..+++.+|++|+|+|+++.++++++.. |..++..+.. ....|+++|+||+|+....+. .++........ .+.+++
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~S 158 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECS 158 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEe
Confidence 445678999999999998877777654 4455554432 246799999999999753221 12222222233 356789
Q ss_pred ccccccHHHHHHHHHhhcCc
Q 012884 402 SETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~ 421 (454)
+....++.+.+..++..+..
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 159 AKTRENVEQCFEELALKIME 178 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999877643
No 136
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.61 E-value=2.4e-15 Score=137.95 Aligned_cols=150 Identities=18% Similarity=0.142 Sum_probs=95.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||+++|+..... .+.. |.......+... ..++.+|||||..+. ...+.
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~-t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~ 71 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV--TTIP-TVGFNVETVTYK--------NVKFNVWDVGGQDKI-------RPLWR 71 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc--cccC-CcccceEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence 37889999999999999999864431 2221 221122222221 237999999998432 22234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----h--cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-----~--~g~~~ 399 (454)
.+++.||++|+|+|+++..+.++...+..++... ....+.|+++|+||+|+.+.. ..+++.+.+. . ..+.+
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEEE
Confidence 4678899999999999876555554333222211 112468999999999987531 1233333321 1 12457
Q ss_pred ecccccccHHHHHHHHH
Q 012884 400 VTSETELSSEDAVKSLS 416 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~ 416 (454)
+++.+..++.+.+.+++
T Consensus 150 ~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 150 SCATSGDGLYEGLTWLS 166 (168)
T ss_pred eeCCCCCChHHHHHHHh
Confidence 89999999999999886
No 137
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.61 E-value=4.8e-15 Score=133.05 Aligned_cols=150 Identities=24% Similarity=0.232 Sum_probs=95.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++.+.. ... +|.......+.... ...+.+|||||..+ +...+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~--~t~~~~~~~~~~~~-------~~~l~i~D~~G~~~-------~~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTI--PTVGFNVEMLQLEK-------HLSLTVWDVGGQEK-------MRTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-ccc--CccCcceEEEEeCC-------ceEEEEEECCCCHh-------HHHHHHH
Confidence 4678999999999999999976532 111 22221222232211 13799999999843 2333455
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--h------cCCce
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K------IGCDK 399 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~------~g~~~ 399 (454)
+++.+|++|+|+|++++.+......+..++... ....+.|+++|+||+|+..... .+++...+. . ..+.+
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 141 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRDWYVQP 141 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCcEEEEe
Confidence 688899999999999865555544433333221 1224799999999999964311 122322221 1 12456
Q ss_pred ecccccccHHHHHHHHH
Q 012884 400 VTSETELSSEDAVKSLS 416 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~ 416 (454)
+++....++.+.++.+.
T Consensus 142 ~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 142 CSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cccccCCChHHHHHHHh
Confidence 78899999999998875
No 138
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=135.85 Aligned_cols=155 Identities=27% Similarity=0.271 Sum_probs=107.5
Q ss_pred cccccccccCCCCCHHHHHHHHHcCC--CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc--
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-- 320 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~--~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~-- 320 (454)
....|+++|++|||||||||+|++.+ ..++..|+.|+.++.-.+. ..+.++|.||.--- ...+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-----------~~~~lVDlPGYGyA-kv~k~~~ 90 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-----------DELRLVDLPGYGYA-KVPKEVK 90 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-----------CcEEEEeCCCcccc-cCCHHHH
Confidence 35689999999999999999999988 5679999999988777663 35899999998421 11111
Q ss_pred -----ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH---HHHHHHH
Q 012884 321 -----LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEI 392 (454)
Q Consensus 321 -----lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~---~~l~~~l 392 (454)
+...+++.=..-.++++++|+..+....|.+++ +++.. .+.|++||+||+|.+...+.. ..+++.+
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~-~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMI-EFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 111233332346788999999987767677665 55554 479999999999999865543 3333333
Q ss_pred Hhc-C----CceecccccccHHHHHHHHHh
Q 012884 393 LKI-G----CDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 393 ~~~-g----~~~~sa~~~~~~~e~~~~l~~ 417 (454)
... . +...++....++++....+..
T Consensus 165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~ 194 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKKGIDELKAKILE 194 (200)
T ss_pred cCCCCccceEEEEecccccCHHHHHHHHHH
Confidence 221 1 234466677777777766654
No 139
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.60 E-value=7.5e-15 Score=133.82 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=101.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|+|||||++++...+. ...|..|+.+.....+..+.. ...+.+|||||..+... + .-.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~~----~---~~~ 67 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGK------QYLLGLYDTAGQEDYDR----L---RPL 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCE------EEEEEEEeCCCcccccc----c---ccc
Confidence 578999999999999999987653 233444443332223332210 12578999999854321 1 113
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEIL 393 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-------------~~l~~~l~ 393 (454)
.++.+|++++|+|.++..+++++. .|..++..+ ..+.|+++|+||+|+.+..... ++......
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 457799999999999887777664 455566544 2479999999999986542211 11222223
Q ss_pred hcC---CceecccccccHHHHHHHHHhh
Q 012884 394 KIG---CDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 394 ~~g---~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
..+ +.++++.+..++.+.++.++..
T Consensus 145 ~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 145 EIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 333 5688999999999999888743
No 140
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.60 E-value=6.5e-15 Score=135.98 Aligned_cols=153 Identities=17% Similarity=0.097 Sum_probs=100.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+.++.... ....|..|+.+.....+..+. ...++.||||||..+.. .....
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~~~ 68 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDYD-------RLRPL 68 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcCCCcceeeeEEEEEECC------EEEEEEEEECCCchhhh-------hhhhh
Confidence 67899999999999999998643 233444343222111222211 01368899999984321 11223
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEIL 393 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-------------~~l~~~l~ 393 (454)
+++.+|++|+|+|++++.+.+.+. .|..++.... .+.|+++|+||+|+.+.+... ++..+...
T Consensus 69 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 145 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 145 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 567899999999999988777774 4656565443 368999999999996532211 11112222
Q ss_pred hc---CCceecccccccHHHHHHHHHh
Q 012884 394 KI---GCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 394 ~~---g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
+. .+.++++.+..++.+.++.+..
T Consensus 146 ~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 146 EIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HcCCcEEEEecccccCCHHHHHHHHHH
Confidence 33 4578899999999999988864
No 141
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.60 E-value=4.8e-15 Score=145.13 Aligned_cols=159 Identities=10% Similarity=0.058 Sum_probs=109.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||++++.+.+. ...|..|+.+.....+.++.. ...+.||||+|.... ......
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~pTi~d~~~k~~~i~~~------~~~l~I~Dt~G~~~~-------~~~~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EEQYTPTIEDFHRKLYSIRGE------VYQLDILDTSGNHPF-------PAMRRL 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCChhHhEEEEEEECCE------EEEEEEEECCCChhh-------hHHHHH
Confidence 578999999999999999986543 234555554443334433211 126889999998432 111122
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC-------CCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh---cC
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-------DYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK---IG 396 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~-------~~~~kp~IvV~NK~Dl~~~~-e~~~~l~~~l~~---~g 396 (454)
++..+|++|+|+|+++.++++++..|.+++..+.. ...++|+|+|+||+|+.... ...+++.+.+.. ..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 45789999999999998888888777777764421 23478999999999997522 123444444432 34
Q ss_pred CceecccccccHHHHHHHHHhhcC
Q 012884 397 CDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 397 ~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+.++++....++++.++.+.+...
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999987653
No 142
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.60 E-value=7e-15 Score=134.12 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=100.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||++++.+... ...|..|+.+.....+..+.. ...+.+|||||+.+.. .....
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~~-------~~~~~ 68 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGK------QVELALWDTAGQEDYD-------RLRPL 68 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccccceEEEEEECCE------EEEEEEEeCCCchhhh-------hcccc
Confidence 688999999999999999997543 233444443333333433211 1268999999984321 11123
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-------------HHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEEIL 393 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~-------------~l~~~l~ 393 (454)
.+..+|++++|+|+++.++.+++. .|..++..+. .+.|+++|+||+|+.......+ +.++...
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 567899999999999876666663 3555555442 4789999999999875322111 1111112
Q ss_pred h---cCCceecccccccHHHHHHHHHhh
Q 012884 394 K---IGCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 394 ~---~g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
. ..+.++++....++.+.+..+++.
T Consensus 146 ~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 146 KIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 2 245778888899999999888743
No 143
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=7.4e-15 Score=136.52 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=102.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.++||||||++++.+... ...|..|..+.....+..+. ....+.||||||..+... ....
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~iwDt~G~~~~~~-------~~~~ 68 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDE------QRIELSLWDTSGSPYYDN-------VRPL 68 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECC------EEEEEEEEECCCchhhhh-------cchh
Confidence 678999999999999999987542 23444443222222222221 123689999999844311 1223
Q ss_pred ccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh----------------HHHHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSLTE 390 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~----------------~e~~~~l~~ 390 (454)
+++.||++|+|+|.++..+++.+ ..|..++..+. ...|+++|+||+||.+. .+..+++++
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 56789999999999999888885 67888887765 36899999999998541 112222322
Q ss_pred HHHhcCCceeccccccc-HHHHHHHHHh
Q 012884 391 EILKIGCDKVTSETELS-SEDAVKSLST 417 (454)
Q Consensus 391 ~l~~~g~~~~sa~~~~~-~~e~~~~l~~ 417 (454)
.+....+.++++.+..+ +.+.|..+..
T Consensus 146 ~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 146 QLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 22222356889888874 9999988775
No 144
>PLN03108 Rab family protein; Provisional
Probab=99.60 E-value=6.6e-15 Score=140.18 Aligned_cols=159 Identities=15% Similarity=0.018 Sum_probs=105.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
-+|.++|.+|||||||+++|++.+......+....+.....+..+.. ...+.+|||||.... .....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~------~i~l~l~Dt~G~~~~-------~~~~~ 73 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK------PIKLQIWDTAGQESF-------RSITR 73 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE------EEEEEEEeCCCcHHH-------HHHHH
Confidence 47889999999999999999976543322222222222233333210 126889999997432 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
.+++.+|++|+|+|+++..+.+.+..|..++..+. ....|+++|+||+|+...+.. .++..+.... ..+.++++.
T Consensus 74 ~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 151 (210)
T PLN03108 74 SYYRGAAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (210)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 56678999999999998877777766666555443 236899999999999753211 1222223333 345778989
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
+..++.+.|+.++..+-
T Consensus 152 ~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 152 TAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998887663
No 145
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.60 E-value=3.5e-15 Score=142.00 Aligned_cols=142 Identities=19% Similarity=0.164 Sum_probs=90.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC-------------------------------CCceeeeccceeeeCCCCCCc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDPTLGA 296 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~-------------------------------~pfTT~~p~~g~v~~~~~~~~ 296 (454)
+|++||.+|+|||||+++|+.....|.. ..++|+++....+...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 4789999999999999999765443320 1466777666665443
Q ss_pred ccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 012884 297 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 297 ~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~ 376 (454)
+.++.|+||||+.+ +.......++.+|++|+|+|++.+...++... ...+..+ ..+++|+|+||+
T Consensus 76 ---~~~~~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~-~~~~~~~----~~~~iIvviNK~ 140 (208)
T cd04166 76 ---KRKFIIADTPGHEQ-------YTRNMVTGASTADLAILLVDARKGVLEQTRRH-SYILSLL----GIRHVVVAVNKM 140 (208)
T ss_pred ---CceEEEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHH-HHHHHHc----CCCcEEEEEEch
Confidence 34799999999843 33345566789999999999987654444332 2333332 124577899999
Q ss_pred CCCCh-HHH----HHHHHHHHHhcCC-----ceecccccccHH
Q 012884 377 DLPEA-RDR----LQSLTEEILKIGC-----DKVTSETELSSE 409 (454)
Q Consensus 377 Dl~~~-~e~----~~~l~~~l~~~g~-----~~~sa~~~~~~~ 409 (454)
|+... .+. .+++.+.+..+++ ..+++....++.
T Consensus 141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~ 183 (208)
T cd04166 141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVV 183 (208)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCc
Confidence 99752 222 2334444445553 344555444433
No 146
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=3.2e-15 Score=147.11 Aligned_cols=131 Identities=27% Similarity=0.274 Sum_probs=98.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-----Cc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-----KG 320 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~-----~~ 320 (454)
-.||+||.||||||||.|.+.+.+... +..+.||+..+.|.+.-.. .+++|.||||++...+.. ..
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--------TQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--------TQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--------eEEEEecCCcccccchhhhHHHHHH
Confidence 478999999999999999999998755 8889999999999987542 489999999999754321 11
Q ss_pred ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHH
Q 012884 321 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE 390 (454)
Q Consensus 321 lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~ 390 (454)
+.....+++.+||++++|+|+++....-.-+ +...|+.| ...|-++|.||+|.......+-.+.+
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~-vl~~l~~y----s~ips~lvmnkid~~k~k~~Ll~l~~ 209 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPR-VLHMLEEY----SKIPSILVMNKIDKLKQKRLLLNLKD 209 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChH-HHHHHHHH----hcCCceeeccchhcchhhhHHhhhHH
Confidence 2234556788999999999999633222222 23456666 37999999999999876544444433
No 147
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.59 E-value=3.6e-15 Score=131.83 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=88.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|++||.+|||||||+|+|.+.... +..| . .+.+ .-.+|||||.... ..........
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~t-~-----~~~~-----------~~~~iDt~G~~~~---~~~~~~~~~~ 58 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKKT-Q-----AVEY-----------NDGAIDTPGEYVE---NRRLYSALIV 58 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---cccc-e-----eEEE-----------cCeeecCchhhhh---hHHHHHHHHH
Confidence 5789999999999999999976532 2211 1 1111 1268999997311 0111122234
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc---CCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~---g~~~~sa~~ 404 (454)
.++.+|++++|+|++++.+..+.. | +.. ..+|+++|+||+|+.+.....++..+.+... .+.++++..
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~~-~---~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPPG-F---ASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCChh-H---HHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 578999999999999877655422 2 221 1359999999999975322233333444443 345678899
Q ss_pred cccHHHHHHHHH
Q 012884 405 ELSSEDAVKSLS 416 (454)
Q Consensus 405 ~~~~~e~~~~l~ 416 (454)
..++++.++.++
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999888764
No 148
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.59 E-value=1.6e-14 Score=130.67 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=95.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|++.+.. ..+..|..+.....+..+. ....+.+|||||+.+... + ...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~l~~~D~~g~~~~~~----~---~~~ 67 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVTVDG------KQVNLGLWDTAGQEEYDR----L---RPL 67 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECC------EEEEEEEEeCCCcccccc----c---chh
Confidence 5779999999999999999987642 2222222211111121110 013689999999865311 1 112
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH------------HHHHHHHHHh
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------------LQSLTEEILK 394 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~------------~~~l~~~l~~ 394 (454)
.++.+|++++|+|+++..+..... .|...+..+. .++|+++|+||+|+.+.... .++..+....
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 347799999999998865554432 3444455443 37999999999999765432 1122222233
Q ss_pred c---CCceecccccccHHHHHHHHH
Q 012884 395 I---GCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 395 ~---g~~~~sa~~~~~~~e~~~~l~ 416 (454)
. .+.++++....++.+.+..+.
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHh
Confidence 3 456778888889999888765
No 149
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.59 E-value=7.8e-15 Score=136.32 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=99.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||++++...+. +..+|.++.+...-.+.... .....+.+|||||..+ +...+..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~-------~~~~~~~ 71 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGN-----SKGITFHFWDVGGQEK-------LRPLWKS 71 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccC-----CCceEEEEEECCCcHh-------HHHHHHH
Confidence 688999999999999999986543 22233221111111121110 0123789999999732 2223344
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hc------CCce
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI------GCDK 399 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~~------g~~~ 399 (454)
.++.||++++|+|+++..+.++...+..++..+.. ..++|+++|+||+|+..... .+++...+. .. .+.+
T Consensus 72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 149 (183)
T cd04152 72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALS-VSEVEKLLALHELSASTPWHVQP 149 (183)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCC-HHHHHHHhCccccCCCCceEEEE
Confidence 57889999999999987666666555555544322 24799999999999874311 122222221 11 2457
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.++.+...+
T Consensus 150 ~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 150 ACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred eecccCCCHHHHHHHHHHHH
Confidence 89999999999999988655
No 150
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.59 E-value=9.7e-15 Score=136.43 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=104.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.++||||||++++..... ..+|..|..+.....+..+.. ...+.||||+|..+.. ....
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~~------~~~l~iwDtaG~e~~~-------~~~~ 71 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQ------RIELSLWDTSGSPYYD-------NVRP 71 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECCE------EEEEEEEECCCchhhH-------hhhh
Confidence 4688999999999999999987542 344444433222222222211 1368999999984421 1122
Q ss_pred cccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh----------------HHHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSLT 389 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~----------------~e~~~~l~ 389 (454)
.+++.+|++++|+|+++..+++.+ ..|..++..+. ...|+++|+||+||.+. .+..++++
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 357889999999999998888886 67878887764 36899999999998541 12223333
Q ss_pred HHHHhcCCceeccccccc-HHHHHHHHHh
Q 012884 390 EEILKIGCDKVTSETELS-SEDAVKSLST 417 (454)
Q Consensus 390 ~~l~~~g~~~~sa~~~~~-~~e~~~~l~~ 417 (454)
+.+....+.++++.+..+ +.+.|..+..
T Consensus 149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 149 KQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 332223467899999998 9999988764
No 151
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.59 E-value=5.6e-15 Score=135.72 Aligned_cols=159 Identities=15% Similarity=0.036 Sum_probs=104.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.||||||||+++|++... +..+..|+.+.....+..+. ....+.+|||||+.+. .....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRYKG------QDYHLEIVDTAGQDEY-------SILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEECC------EEEEEEEEECCChHhh-------HHHHH
Confidence 3688999999999999999997653 33344444333233333221 1126789999998542 11222
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..+..++++++|+|+++..+.+....+...+..+. ...+.|+|+|+||+|+...++. .++.......+ .+.++++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAR 146 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 45667999999999998777777766655554321 1246899999999998743211 11222223333 35678888
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
...++.+.+..+++...
T Consensus 147 ~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 147 ENENVEEAFELLIEEIE 163 (180)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999986654
No 152
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.59 E-value=6.5e-15 Score=130.14 Aligned_cols=150 Identities=24% Similarity=0.294 Sum_probs=93.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|.+.+......| |.......+... ...+.+|||||..+. ...+..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~--------~~~~~~~D~~g~~~~-------~~~~~~ 63 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKG--------NVTLKVWDLGGQPRF-------RSMWER 63 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEEC--------CEEEEEEECCCCHhH-------HHHHHH
Confidence 578999999999999999998754322222 222222222221 136899999998432 223445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCcee
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV 400 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-------~~g~~~~ 400 (454)
+++.+|++++|+|++..........+...+... ....++|+++|+||+|+..... .+++.+.+. ...+.++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSI 141 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEE
Confidence 678899999999998754443333222222211 1124789999999999876432 122222221 1234567
Q ss_pred cccccccHHHHHHHHH
Q 012884 401 TSETELSSEDAVKSLS 416 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~ 416 (454)
++.+..++.+.++.+.
T Consensus 142 Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 142 SCKEKTNIDIVLDWLI 157 (159)
T ss_pred EeccCCChHHHHHHHh
Confidence 8888888888888775
No 153
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.58 E-value=1.2e-14 Score=140.12 Aligned_cols=152 Identities=18% Similarity=0.093 Sum_probs=101.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||+++|...+.. .+ .+|........... ...+.||||||.... ......
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~~-~~Tig~~~~~~~~~--------~~~l~iwDt~G~e~~-------~~l~~~ 63 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DT-VSTVGGAFYLKQWG--------PYNISIWDTAGREQF-------HGLGSM 63 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CC-CCccceEEEEEEee--------EEEEEEEeCCCcccc-------hhhHHH
Confidence 5789999999999999999876532 12 12322111111111 126899999998542 112233
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC-------------------hH----HH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE-------------------AR----DR 384 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~-------------------~~----e~ 384 (454)
+++.+|++|+|+|+++..+++++..++..+.... ..+.|+|||+||+|+.+ .+ +.
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 5678999999999999888888876655555432 24689999999999975 11 22
Q ss_pred HHHHHHHHHh-------------cCCceecccccccHHHHHHHHHhhc
Q 012884 385 LQSLTEEILK-------------IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 385 ~~~l~~~l~~-------------~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.+++.+.. ..+.++++.+..++.+.+..+....
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2233333221 2367899999999999999887655
No 154
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.58 E-value=1.3e-14 Score=139.32 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=104.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|.+||.+|||||||++++...+.. ..|..|. .+.....+..+. ....+.+|||||..+. ....
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~-~~~~~tig~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~ 79 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNC------GKIRFYCWDTAGQEKF-------GGLR 79 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC-CccCCccceeEEEEEEEECC------eEEEEEEEECCCchhh-------hhhh
Confidence 47899999999999999998765432 1221111 111111121111 0137899999998542 2222
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCceeccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSE 403 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~~sa~ 403 (454)
..+++.+|++|+|+|+++..+.+.+..|..++..+. .+.|+++|+||+|+.......+++ +... ...+.++++.
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk 155 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAK 155 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCC
Confidence 335678999999999999888888877777777553 468999999999986432111222 2222 2456789999
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
+..++.+.|..++..+.
T Consensus 156 ~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 156 SNYNFEKPFLYLARKLA 172 (219)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987764
No 155
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.58 E-value=1.2e-14 Score=136.25 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=104.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.++||||||+.++..... ...|..|..+.....+..+. ....+.||||||..+. ......
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~e~~-------~~l~~~ 70 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVDG------RTVSLNLWDTAGQEEY-------DRLRTL 70 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEECC------EEEEEEEEECCCchhh-------hhhhhh
Confidence 678999999999999999986532 23333332221111122211 0136899999998543 112223
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH----------------HHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL----------------QSLTE 390 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~----------------~~l~~ 390 (454)
+++.+|++|+|+|+++..+++.+. .|..++..+. .+.|++||+||.||.+..... +.+.+
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 567899999999999988888875 4666666543 368999999999996542211 11211
Q ss_pred HHHhcCCceecccccccHHHHHHHHHhhcCc
Q 012884 391 EILKIGCDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 391 ~l~~~g~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
.+....+.++++.+..++.+.++.+......
T Consensus 148 ~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 148 QIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 1222346789999999999999999876643
No 156
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=9.3e-15 Score=140.47 Aligned_cols=157 Identities=16% Similarity=0.105 Sum_probs=102.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.+|||||||++++...+.....|+.|.- +.....+..+. ....+.+|||||... .+...
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~------~~~~~-- 67 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG------EESTLVVIDHWEQEM------WTEDS-- 67 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC------EEEEEEEEeCCCcch------HHHhH--
Confidence 5789999999999999999765432222322211 11222222221 023789999999851 11111
Q ss_pred cccc-cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH-HHHHHHh--cCCceecc
Q 012884 327 RHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEILK--IGCDKVTS 402 (454)
Q Consensus 327 ~~i~-~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~-l~~~l~~--~g~~~~sa 402 (454)
.+. .+|++++|+|+++..+.+....|..++..+.. ..+.|+|+|+||+|+...++...+ ..+.... ..+.++++
T Consensus 68 -~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA 145 (221)
T cd04148 68 -CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSA 145 (221)
T ss_pred -HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecC
Confidence 233 79999999999998777777777776765432 247999999999999754322111 1222222 34568899
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
.+..++.+.++.+...+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 146 GLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887664
No 157
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.58 E-value=1.8e-14 Score=132.06 Aligned_cols=152 Identities=15% Similarity=0.057 Sum_probs=99.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|+|||||++++.+.. ...+|+.|+.+.....+..+.. ...+.+|||||+.+... ..-.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~~-------~~~~ 67 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTEYVPTAFDNFSVVVLVDGK------PVRLQLCDTAGQDEFDK-------LRPL 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECCE------EEEEEEEECCCChhhcc-------cccc
Confidence 57789999999999999998653 3456666664433333332210 23689999999854321 1123
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-------------HHHHHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD-------------RLQSLTEEIL 393 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-------------~~~~l~~~l~ 393 (454)
.++.+|++|+|+|++++.+.+... .|...+.... .+.|+++|+||+|+..... ..++......
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 144 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE 144 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH
Confidence 567899999999999887776653 4555555432 3689999999999964321 0111222222
Q ss_pred h---cCCceecccccccHHHHHHHHH
Q 012884 394 K---IGCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 394 ~---~g~~~~sa~~~~~~~e~~~~l~ 416 (454)
. ..+.++++.+..++.+.++.+.
T Consensus 145 ~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 145 KIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 2 2467889999999999887653
No 158
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.58 E-value=9.4e-15 Score=135.96 Aligned_cols=150 Identities=20% Similarity=0.208 Sum_probs=98.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|||||||++++...+. ..+ .+|...+...+... ...+.+|||||..+ +...+..
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~~--~~~-~pt~g~~~~~~~~~--------~~~~~i~D~~Gq~~-------~~~~~~~ 80 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYK--------NISFTVWDVGGQDK-------IRPLWRH 80 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCCC--ccc-cCCcceeEEEEEEC--------CEEEEEEECCCCHH-------HHHHHHH
Confidence 688999999999999999975432 122 12222222223322 23799999999733 2233445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CCc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 398 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~--~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~-------g~~ 398 (454)
+++.+|++|+|+|+++.++.++... ++..+ .....+.|++||+||+|+.+..+ .+++.+.+.-. .+.
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~---~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHH---HHHHHhcCHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEE
Confidence 6788999999999998765554432 33322 11234789999999999976532 34444444211 123
Q ss_pred eecccccccHHHHHHHHHhhc
Q 012884 399 KVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++++.+..++.+.++.++..+
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHH
Confidence 578999999999999997544
No 159
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=1.9e-14 Score=139.77 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=103.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.+||.++||||||++++..... ...|..|........+..+. ....+.||||+|..+. .....
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~pTi~~~~~~~i~~~~------~~v~l~iwDTaG~e~~-------~~~~~ 79 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTAGLETEE------QRVELSLWDTSGSPYY-------DNVRP 79 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCC-CCCcCCceeeeeEEEEEECC------EEEEEEEEeCCCchhh-------HHHHH
Confidence 3788999999999999999986532 23344333222222222221 1237899999997432 22223
Q ss_pred cccccccEEEEEEeCCCCCCHhh-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh------------HHH-HHHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------------RDR-LQSLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d-~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~------------~e~-~~~l~~~l 392 (454)
.+++.||++|+|+|+++..+++. ...|..++..+. ...|+|+|+||+||.+. ... .++..+..
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a 156 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA 156 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence 46788999999999999888876 467777777654 35799999999998641 111 12233333
Q ss_pred HhcC---Cceecccccc-cHHHHHHHHHhhc
Q 012884 393 LKIG---CDKVTSETEL-SSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~g---~~~~sa~~~~-~~~e~~~~l~~~~ 419 (454)
...+ +.++++.+.. ++.+.|..+....
T Consensus 157 ~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 157 KQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 3444 4678999886 7999999887654
No 160
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.5e-14 Score=135.99 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=120.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceee--eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~--~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~ 323 (454)
+.+|-+||.++||||+|+-++...... ..| -+|+ |-....+..+.. ..++++|||+|+ +.+..
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~-~~~-~sTiGIDFk~kti~l~g~------~i~lQiWDtaGQ-------erf~t 76 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFN-TSF-ISTIGIDFKIKTIELDGK------KIKLQIWDTAGQ-------ERFRT 76 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCc-CCc-cceEEEEEEEEEEEeCCe------EEEEEEEEcccc-------hhHHH
Confidence 346779999999999999999865432 111 2232 444444554431 247999999999 34555
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCce
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDK 399 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~ 399 (454)
.+-.+++.|+.+++|+|.+...+++.+..|...++++.+. ..|.++|.||+|+.+.+ ++.+.++.++ ...+.+
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~F~E 153 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVSKERGEALAREY-GIKFFE 153 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccccccHHHHHHHHHHh-CCeEEE
Confidence 6778889999999999999999999998899999988754 79999999999998743 4445555555 356789
Q ss_pred ecccccccHHHHHHHHHhhcC
Q 012884 400 VTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+++.+..++.++|..++++.-
T Consensus 154 tSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 154 TSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred ccccCCCCHHHHHHHHHHHHH
Confidence 999999999999999998774
No 161
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.57 E-value=1.2e-14 Score=134.15 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=96.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||+++|...+. . ++. +|.......+... ...+.+|||||..+. ...+.
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~-~~~-~t~~~~~~~~~~~--------~~~l~l~D~~G~~~~-------~~~~~ 75 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-V-TTI-PTIGFNVETVTYK--------NISFTVWDVGGQDKI-------RPLWR 75 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-C-CcC-CccccceEEEEEC--------CEEEEEEECCCChhh-------HHHHH
Confidence 4788999999999999999964432 1 222 1222222222221 237899999998432 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
.+++.||++|+|+|++++.+.++...+...+... ....+.|++||+||+|+.+... .+++.+.+.. ..+.+
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 153 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYIQP 153 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEEEE
Confidence 4578999999999999876555544433333211 1123689999999999975421 1233332211 12346
Q ss_pred ecccccccHHHHHHHHHhh
Q 012884 400 VTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~ 418 (454)
+++.+..++.+.++.++..
T Consensus 154 ~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 154 TCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 8899999999999998754
No 162
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.57 E-value=2.6e-14 Score=125.02 Aligned_cols=153 Identities=24% Similarity=0.135 Sum_probs=92.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
++|+++|.+|+|||||+|+|.........++++|.+.....+..... ...+.+|||||+.+... +..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~G~~~~~~----~~~--- 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK------TYKFNLLDTAGQEDYRA----IRR--- 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE------EEEEEEEECCCcccchH----HHH---
Confidence 47899999999999999999988844466778887766655544310 13688999999754321 111
Q ss_pred cccccccEEEEEEeCCCC-CCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH---HhcCCceec
Q 012884 327 RHLRRTRLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCDKVT 401 (454)
Q Consensus 327 ~~i~~advll~ViDas~~-~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l---~~~g~~~~s 401 (454)
...+.++.++.++|.... ....+.. .+...+..... .+.|+++|+||+|+.... ..+.....+ ....+.+++
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~s 145 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLS 145 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEee
Confidence 112334555555554432 1122111 22222332221 178999999999997642 222333333 334567788
Q ss_pred ccccccHHHHHHHH
Q 012884 402 SETELSSEDAVKSL 415 (454)
Q Consensus 402 a~~~~~~~e~~~~l 415 (454)
+....++.+.++.+
T Consensus 146 a~~~~gv~~~~~~l 159 (161)
T TIGR00231 146 AETGKNIDSAFKIV 159 (161)
T ss_pred cCCCCCHHHHHHHh
Confidence 88888888887664
No 163
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.56 E-value=1.3e-14 Score=132.02 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=96.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|.+..... + ..|...+...+... +..+.+|||||..+ +...+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~--~-~~t~g~~~~~i~~~--------~~~~~~~D~~G~~~-------~~~~~~ 76 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH--I-TPTQGFNIKTVQSD--------GFKLNVWDIGGQRA-------IRPYWR 76 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc--c-CCCCCcceEEEEEC--------CEEEEEEECCCCHH-------HHHHHH
Confidence 478999999999999999999864321 1 11111111133322 23789999999743 223345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~-------g~~~ 399 (454)
..++.+|++++|+|++......+...+...+.... ....+|+++++||+|+.+..+ .+++.+.+.-. .+.+
T Consensus 77 ~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~~ 154 (173)
T cd04155 77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQA 154 (173)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEEE
Confidence 56788999999999987544444333322222111 123699999999999976422 23343333211 1346
Q ss_pred ecccccccHHHHHHHHHh
Q 012884 400 VTSETELSSEDAVKSLST 417 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~ 417 (454)
+++.+..++++.++++++
T Consensus 155 ~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 155 CSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred eECCCCCCHHHHHHHHhc
Confidence 889999999999999873
No 164
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.56 E-value=1.4e-14 Score=157.87 Aligned_cols=149 Identities=23% Similarity=0.340 Sum_probs=104.0
Q ss_pred cCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc--CCcccchhhcccc
Q 012884 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRHLR 330 (454)
Q Consensus 253 G~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~--~~~lg~~fl~~i~ 330 (454)
|.||||||||+|+|++.+..++++|++|.+...+.++++. .++.++||||+.+.... .+.+.+.++. .+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--------~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~ 71 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--------EDIEIVDLPGIYSLTTFSLEEEVARDYLL-NE 71 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--------eEEEEEECCCccccCccchHHHHHHHHHh-hc
Confidence 8999999999999999988889999999999888887642 37899999999764321 1112222222 24
Q ss_pred cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCceecccccccH
Q 012884 331 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSETELSS 408 (454)
Q Consensus 331 ~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~sa~~~~~~ 408 (454)
.+|++++|+|+++.+ .+...+.+..+ .++|+++|+||+|+.+......+.++.-+.+ .+.++++.+..++
T Consensus 72 ~aDvvI~VvDat~le--r~l~l~~ql~~------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 72 KPDLVVNVVDASNLE--RNLYLTLQLLE------LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred CCCEEEEEecCCcch--hhHHHHHHHHh------cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCH
Confidence 789999999998742 33333333222 3799999999999865332212222222223 4567889999999
Q ss_pred HHHHHHHHhh
Q 012884 409 EDAVKSLSTE 418 (454)
Q Consensus 409 ~e~~~~l~~~ 418 (454)
++.++.+.+.
T Consensus 144 ~eL~~~i~~~ 153 (591)
T TIGR00437 144 ERLKDAIRKA 153 (591)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 165
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.55 E-value=2.9e-14 Score=133.55 Aligned_cols=126 Identities=22% Similarity=0.270 Sum_probs=80.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-cCC---------------CceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-a~~---------------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
++.|+++|.+|+|||||+++|+.....+ ..+ .++|.......+... ...+.+||||
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------~~~~~l~Dtp 73 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK--------DTKINIVDTP 73 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC--------CEEEEEEECC
Confidence 4678999999999999999998632111 111 233443333333322 2478999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~ 387 (454)
|+.+ +......+++.+|++++|+|+++... ...+.+...+.. .++|+++|+||+|+.... +..++
T Consensus 74 G~~~-------~~~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~ 140 (194)
T cd01891 74 GHAD-------FGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDE 140 (194)
T ss_pred CcHH-------HHHHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 9854 33345566788999999999987532 223333333332 368999999999996432 23444
Q ss_pred HHHHH
Q 012884 388 LTEEI 392 (454)
Q Consensus 388 l~~~l 392 (454)
+.+.+
T Consensus 141 ~~~~~ 145 (194)
T cd01891 141 VFDLF 145 (194)
T ss_pred HHHHH
Confidence 55544
No 166
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=2.3e-14 Score=133.40 Aligned_cols=153 Identities=21% Similarity=0.190 Sum_probs=96.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||++++...+. + .+. +|.......+... ...+.+|||||..+ +...+.
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~-~-~~~-~T~~~~~~~~~~~--------~~~~~l~D~~G~~~-------~~~~~~ 79 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV-V-TTI-PTIGFNVETVEYK--------NLKFTMWDVGGQDK-------LRPLWR 79 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-c-ccC-CccccceEEEEEC--------CEEEEEEECCCCHh-------HHHHHH
Confidence 4788999999999999999975432 1 222 2322222333322 23789999999843 222344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-----c--CCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----I--GCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-----~--g~~~ 399 (454)
.+++.+|++|+|+|+++..+.++.......+.. .......|++||+||+|+.+... .+++...+.. . .+.+
T Consensus 80 ~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~ 157 (182)
T PTZ00133 80 HYYQNTNGLIFVVDSNDRERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQG 157 (182)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEEEe
Confidence 567889999999999986555544432222211 11124689999999999975321 1233333321 1 1235
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.++.++..+
T Consensus 158 ~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 158 CCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred eeCCCCCCHHHHHHHHHHHH
Confidence 78899999999999988544
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.54 E-value=2.5e-14 Score=130.46 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=92.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.||||||||+|+|.+.... . .+| +.+.+.. . .+|||||+.... ..+......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~---~~~-----~~v~~~~--------~--~~iDtpG~~~~~---~~~~~~~~~ 60 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A---RKT-----QAVEFND--------K--GDIDTPGEYFSH---PRWYHALIT 60 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C---ccc-----eEEEECC--------C--CcccCCccccCC---HHHHHHHHH
Confidence 6899999999999999999876421 1 111 1222211 1 269999984321 112233345
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC----Cceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG----CDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g----~~~~sa~ 403 (454)
.++.+|++++|+|++........ ++..+. .++|+++|+||+|+.+.. .+.+.+.+...+ +.++++.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~-----~~~~~~---~~~~ii~v~nK~Dl~~~~--~~~~~~~~~~~~~~~p~~~~Sa~ 130 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA-----GLLDIG---VSKRQIAVISKTDMPDAD--VAATRKLLLETGFEEPIFELNSH 130 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH-----HHHhcc---CCCCeEEEEEccccCccc--HHHHHHHHHHcCCCCCEEEEECC
Confidence 57899999999999976543321 122221 368999999999997532 344445454444 5568999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.+..+....
T Consensus 131 ~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 131 DPQSVQQLVDYLASLT 146 (158)
T ss_pred CccCHHHHHHHHHHhc
Confidence 9999999999987555
No 168
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.54 E-value=6.9e-14 Score=130.35 Aligned_cols=155 Identities=15% Similarity=0.063 Sum_probs=101.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.++||||||++++...+. ..+|..|.- +.....+..+.. ...+.+|||+|..+. .....
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~------~~~l~iwDt~G~~~~-------~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGT------EITFSIWDLGGQREF-------INMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCE------EEEEEEEeCCCchhH-------HHhhH
Confidence 578999999999999999987543 233333321 211122332210 136899999998442 22223
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-----HH-HHHHHHHHHHhc--CCc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-----RD-RLQSLTEEILKI--GCD 398 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~-----~e-~~~~l~~~l~~~--g~~ 398 (454)
.+++.+|++++|+|+++..+.+++..|..++..+.+ ...| ++|+||+|+... ++ ..++..+..... .+.
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLI 144 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEE
Confidence 457889999999999998888888777777766542 2455 788999999531 11 122222222333 356
Q ss_pred eecccccccHHHHHHHHHhhc
Q 012884 399 KVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++++.+..++.+.+..+...+
T Consensus 145 e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 145 FCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999988655
No 169
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.54 E-value=4.1e-14 Score=136.51 Aligned_cols=155 Identities=13% Similarity=0.097 Sum_probs=100.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.+||.+|||||||+++++.... ...|..|..+.....+..+. ....+.||||+|..+.. .....
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~------~~v~L~iwDt~G~e~~~-------~l~~~ 68 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDK------RRIELNMWDTSGSSYYD-------NVRPL 68 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECC------EEEEEEEEeCCCcHHHH-------HHhHH
Confidence 678999999999999999987542 23454444332222233221 12368999999985321 11123
Q ss_pred ccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----------------HHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLTE 390 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----------------~~~~l~~ 390 (454)
.++.+|++|+|+|+++.++++.+ ..|..++..+. .+.|+|||+||+||..... ..+.+++
T Consensus 69 ~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak 145 (222)
T cd04173 69 AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK 145 (222)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence 46789999999999998877777 45555565543 4689999999999965311 1222222
Q ss_pred HHHhcCCceecccccc-cHHHHHHHHHhhc
Q 012884 391 EILKIGCDKVTSETEL-SSEDAVKSLSTEG 419 (454)
Q Consensus 391 ~l~~~g~~~~sa~~~~-~~~e~~~~l~~~~ 419 (454)
.+....+.++++.+.. ++.+.|..+....
T Consensus 146 ~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 146 QVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 2222346688988766 4999888776543
No 170
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.54 E-value=4.5e-14 Score=128.92 Aligned_cols=113 Identities=26% Similarity=0.285 Sum_probs=75.7
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 328 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~ 328 (454)
|.++|.+|||||||+++|.+.+. ...|..|. ......+... ..++.+|||||..+ +...+..+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~-g~~~~~i~~~--------~~~l~i~Dt~G~~~-------~~~~~~~~ 64 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTT-GFNSVAIPTQ--------DAIMELLEIGGSQN-------LRKYWKRY 64 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccC-CcceEEEeeC--------CeEEEEEECCCCcc-------hhHHHHHH
Confidence 67899999999999999997643 22332222 1111122211 24799999999843 33345567
Q ss_pred cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
++.+|++|+|+|+++.......+.+..++... ..++|+++|+||+|+...
T Consensus 65 ~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~---~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 65 LSGSQGLIFVVDSADSERLPLARQELHQLLQH---PPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC---CCCCcEEEEEeCcCCcCC
Confidence 89999999999998865555444443434321 247999999999999764
No 171
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.53 E-value=5.5e-14 Score=128.00 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=101.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||++++..... ...++ +|.......+..+.. ...+.+|||+|... ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f-~~~~~-~~~~~~~~~i~~~~~------~~~l~i~D~~g~~~------------~~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY-VQLES-PEGGRFKKEVLVDGQ------SHLLLIRDEGGAPD------------AQ 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCCC-CCccceEEEEEECCE------EEEEEEEECCCCCc------------hh
Confidence 578999999999999999875432 12222 221111122332210 13689999999842 12
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--hHHH----HHHHHHHHHhcCCceec
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARDR----LQSLTEEILKIGCDKVT 401 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~--~~e~----~~~l~~~l~~~g~~~~s 401 (454)
.++.+|++++|+|.++..+++....|..++..+. ...+.|+++|+||+|+.. .++. .+++.+......+.+++
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 140 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC 140 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence 3467999999999999999998887888887653 224689999999999852 1221 22333333335678999
Q ss_pred ccccccHHHHHHHHHh
Q 012884 402 SETELSSEDAVKSLST 417 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~ 417 (454)
+.+..++.+.|+.+++
T Consensus 141 Ak~~~~i~~~f~~~~~ 156 (158)
T cd04103 141 ATYGLNVERVFQEAAQ 156 (158)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999998874
No 172
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.52 E-value=1.2e-13 Score=123.05 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=98.0
Q ss_pred ccccccCCCCCHHHHHHHHHc--CCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc------CC
Q 012884 248 DDTDKGLPNAGKSTLLAAITH--AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------GK 319 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~--~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~------~~ 319 (454)
||+++|.+|||||||+|+|++ .....+..+++|.......+ ...++++||||+...... -.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~D~~g~~~~~~~~~~~~~~~ 69 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-----------NDKFRLVDLPGYGYAKVSKEVKEKWG 69 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-----------cCeEEEecCCCccccccCHHHHHHHH
Confidence 588999999999999999994 33345666666665433222 127899999998543110 01
Q ss_pred cccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHHHH---
Q 012884 320 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL--- 393 (454)
Q Consensus 320 ~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~---~~~l~~~l~--- 393 (454)
.+...++...+.++++++|+|........+.+ +.+++.. .+.|+++|+||+|+....+. ...+...+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~ 143 (170)
T cd01876 70 KLIEEYLENRENLKGVVLLIDSRHGPTEIDLE-MLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFE 143 (170)
T ss_pred HHHHHHHHhChhhhEEEEEEEcCcCCCHhHHH-HHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence 12223445556678999999998764444333 3345553 35899999999999654321 222233332
Q ss_pred -hcCCceecccccccHHHHHHHHHh
Q 012884 394 -KIGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 394 -~~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
...+.++++....+..+.++.+++
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHH
Confidence 123447788888888888888764
No 173
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.52 E-value=7.4e-14 Score=132.12 Aligned_cols=129 Identities=21% Similarity=0.218 Sum_probs=86.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC------c----------cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD------I----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~------I----------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
.|+++|.+|+|||||+++|+..... . ....++|++.....++.. +.++.|+||||+
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtPG~ 75 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------NRHYAHVDCPGH 75 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--------CeEEEEEECcCH
Confidence 5899999999999999999864110 0 013456666544444322 247999999998
Q ss_pred ccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH----
Q 012884 312 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ---- 386 (454)
Q Consensus 312 i~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~~---- 386 (454)
.+ +.......+..+|++++|+|+..+...++.+.+. .+.. .++| +|+|+||||+....+..+
T Consensus 76 ~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~-~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~~ 142 (195)
T cd01884 76 AD-------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLL-LARQ-----VGVPYIVVFLNKADMVDDEELLELVEM 142 (195)
T ss_pred HH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHHH
Confidence 43 4445567788899999999998865555555543 3443 3566 778999999975443333
Q ss_pred HHHHHHHhcCC
Q 012884 387 SLTEEILKIGC 397 (454)
Q Consensus 387 ~l~~~l~~~g~ 397 (454)
++.+.+..+++
T Consensus 143 ~i~~~l~~~g~ 153 (195)
T cd01884 143 EVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHhcc
Confidence 34555555554
No 174
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.52 E-value=1.1e-13 Score=130.69 Aligned_cols=151 Identities=18% Similarity=0.098 Sum_probs=98.6
Q ss_pred ccccccCCCCCHHHHHH-HHHcCCC----CccCCCceee--eccceee--------eCCCCCCcccccccEEEecCCCCc
Q 012884 248 DDTDKGLPNAGKSTLLA-AITHAKP----DIADYPFTTL--MPNLGRL--------DGDPTLGAEKYSSEATLADLPGLI 312 (454)
Q Consensus 248 dVglVG~pNaGKSTLln-aL~~~~~----~Ia~~pfTT~--~p~~g~v--------~~~~~~~~~~~~~~i~liDTPGii 312 (454)
+|.++|.+|||||||+. ++.+... ....|..|.. +.....+ ..+ . ....+.||||||..
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~----~--~~v~l~iwDTaG~~ 77 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD----G--VSVSLRLWDTFGDH 77 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeC----C--EEEEEEEEeCCCCh
Confidence 68899999999999996 5654321 1233333331 1110000 111 0 12378999999985
Q ss_pred cccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCh----------
Q 012884 313 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEA---------- 381 (454)
Q Consensus 313 ~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~---------- 381 (454)
+. +. ..+++.||++++|+|.++..+.+.++ .|.+++..+. .+.|+++|+||+||.+.
T Consensus 78 ~~------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 78 DK------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred hh------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhccc
Confidence 31 11 12568899999999999988888885 4767776553 36899999999998641
Q ss_pred -------------HHHHHHHHHHHHhcCCceecccccccHHHHHHHHHh
Q 012884 382 -------------RDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 382 -------------~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
.+..+.+++.+. ..+.++++.+..++.+.|+.+.+
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHH
Confidence 122233333222 35778999999999999988764
No 175
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.51 E-value=1.6e-14 Score=149.79 Aligned_cols=160 Identities=25% Similarity=0.331 Sum_probs=110.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc----c
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL----G 322 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l----g 322 (454)
+.+.++|+||||||||+|.++.+.+.+.+|+|||....+|.+++.- ..|+++|||||.+..-++... .
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--------lrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--------LRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--------eeeeecCCccccCcchhhhhHHHHHH
Confidence 4567899999999999999999999999999999999999887652 379999999998754443321 1
Q ss_pred chhhcccccccEEEEEEeCCC--CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcC-
Q 012884 323 RNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIG- 396 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~--~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g- 396 (454)
...+.||+. ++||++|.|. +-+..+...|.+.+. |-..++|+|+|+||+|+...++ .-+++.+.+...+
T Consensus 241 ITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIK---pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 241 ITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIK---PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhH---HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 245778875 4889999986 444444433444444 3346999999999999876532 2233334444433
Q ss_pred --CceecccccccHHHHHHHHHhhc
Q 012884 397 --CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 397 --~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+...+-.++.++-+.....|..+
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHH
Confidence 34445555666555555555433
No 176
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.50 E-value=1.3e-13 Score=128.39 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=100.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|+|||||+++|..... ...+..|+.+.....+..+. ....+.+|||||..+... +. ..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~~----~~---~~ 68 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDG------KPVQLALWDTAGQEEYER----LR---PL 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEECC------EEEEEEEEECCCChhccc----cc---hh
Confidence 678999999999999999985432 12232333332222332221 113688999999854311 11 12
Q ss_pred ccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--------------HHHHHHHHHH
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--------------DRLQSLTEEI 392 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--------------e~~~~l~~~l 392 (454)
++..+|++++|+|.++.++.+++. .|..++.... ...|+++|+||+|+.+.. +....+.+.+
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI 145 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHh
Confidence 457799999999998877777664 4666665433 369999999999985421 1122223333
Q ss_pred HhcCCceecccccccHHHHHHHHHhhc
Q 012884 393 LKIGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
....+.++++....++.+.++.+....
T Consensus 146 ~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 146 GAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred CCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 223567899999999999999988544
No 177
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.50 E-value=8.9e-14 Score=129.86 Aligned_cols=153 Identities=25% Similarity=0.324 Sum_probs=99.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC------------------CCceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD------------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~------------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
++.|+++|..++|||||+++|+.....+.. ..+.|.+.....+... .-...++++|
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~------~~~~~i~~iD 76 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKN------ENNRKITLID 76 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBT------ESSEEEEEEE
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccc------ccccceeecc
Confidence 467899999999999999999865432211 0112222222222200 1135899999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHH
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRL 385 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~ 385 (454)
|||+.+ +.....+.+..+|++|+|||+..+...+..+.+. .+.. .+.|++||+||+|+...+ +..
T Consensus 77 tPG~~~-------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~-~~~~-----~~~p~ivvlNK~D~~~~~~~~~~ 143 (188)
T PF00009_consen 77 TPGHED-------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLK-ILRE-----LGIPIIVVLNKMDLIEKELEEII 143 (188)
T ss_dssp ESSSHH-------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHH-HHHH-----TT-SEEEEEETCTSSHHHHHHHH
T ss_pred cccccc-------eeecccceecccccceeeeecccccccccccccc-cccc-----cccceEEeeeeccchhhhHHHHH
Confidence 999843 3445667788999999999999876666655554 4443 478999999999998321 223
Q ss_pred HHHHHHH-Hhc--------CCceecccccccHHHHHHHHHh
Q 012884 386 QSLTEEI-LKI--------GCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 386 ~~l~~~l-~~~--------g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
+++.+.+ +.. .+.+.++....++.+.++.+..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 3444233 222 2456788889999888877754
No 178
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=1.5e-13 Score=130.54 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=102.5
Q ss_pred ccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcccc
Q 012884 252 KGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 330 (454)
Q Consensus 252 VG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~ 330 (454)
||.+|||||||++++..... ...|..|. .+-....+..+. ....+.||||||..+. ......+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~------~~~~l~iwDt~G~e~~-------~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNR------GPIRFNVWDTAGQEKF-------GGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECC------EEEEEEEEECCCchhh-------hhhhHHHhc
Confidence 69999999999999986432 22333222 111112222211 0237899999998442 222334678
Q ss_pred cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH--HhcCCceecccccccH
Q 012884 331 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKVTSETELSS 408 (454)
Q Consensus 331 ~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l--~~~g~~~~sa~~~~~~ 408 (454)
.+|++|+|+|+++..+.+.+..|..++..+. .+.|+++|+||+|+.......+.+ ... ..+.+.++++....++
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~v 142 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYNF 142 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCCH
Confidence 8999999999999888888888888887653 368999999999985421111111 111 2346788999999999
Q ss_pred HHHHHHHHhhcC
Q 012884 409 EDAVKSLSTEGG 420 (454)
Q Consensus 409 ~e~~~~l~~~~~ 420 (454)
.+.|..+...+.
T Consensus 143 ~~~F~~l~~~i~ 154 (200)
T smart00176 143 EKPFLWLARKLI 154 (200)
T ss_pred HHHHHHHHHHHH
Confidence 999999987663
No 179
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.49 E-value=8.8e-14 Score=125.11 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=108.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
||.++|.++||||||+++|.+.... ..|..|. .+.....+..+. ....+.|||++|..+. .....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~-------~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSIDG------KPVNLEIWDTSGQERF-------DSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEETT------EEEEEEEEEETTSGGG-------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-cccccccccccccccccccc------cccccccccccccccc-------ccccc
Confidence 4779999999999999999976532 3333332 233333343321 1236899999997432 11112
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 402 (454)
..++.+|++++|+|.++..+.+.+..|...+..+.+ ...|++||+||.|+.+.+ +..+++.+.+. ..+.++++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 143 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA 143 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence 346789999999999998888888888888887764 358999999999988632 22334444444 56788999
Q ss_pred cccccHHHHHHHHHhh
Q 012884 403 ETELSSEDAVKSLSTE 418 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~ 418 (454)
....++.+.+..+.+.
T Consensus 144 ~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 144 KNGENVKEIFQELIRK 159 (162)
T ss_dssp TTTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999888753
No 180
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.49 E-value=2.9e-13 Score=147.30 Aligned_cols=148 Identities=21% Similarity=0.198 Sum_probs=103.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
..|+++|.+|+|||||+++|.+.+.....++++|.+.....+.+.. ...++||||||+.+ +.....
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-------~~~i~~iDTPGhe~-------F~~~r~ 153 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-------GKMITFLDTPGHEA-------FTSMRA 153 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-------CcEEEEEECCCCcc-------hhhHHH
Confidence 5789999999999999999998765545567777765444444321 12799999999843 333344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-----------c
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----------I 395 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-----------~ 395 (454)
+.+..+|++++|+|+.++...+..+.+.. +.. .+.|+++++||+|+.... .+++.+.+.. .
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~-~~~-----~~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISH-AKA-----ANVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHH-HHH-----cCCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCCCc
Confidence 56788999999999988665555555432 332 478999999999997531 1122222221 1
Q ss_pred CCceecccccccHHHHHHHHH
Q 012884 396 GCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 396 g~~~~sa~~~~~~~e~~~~l~ 416 (454)
.+.++++.+..++.+.++.+.
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred eEEEEECCCCCChHHHHHhhh
Confidence 356789999999999988875
No 181
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=2.5e-13 Score=116.91 Aligned_cols=152 Identities=19% Similarity=0.142 Sum_probs=93.6
Q ss_pred cccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcccc
Q 012884 251 DKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 330 (454)
Q Consensus 251 lVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~ 330 (454)
++|.+|+|||||+|+|.+.......+..|..+.....+.... ....+.+|||||+..... .....++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~~-------~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG------KKVKLQIWDTAGQERFRS-------LRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC------EEEEEEEEecCChHHHHh-------HHHHHhc
Confidence 579999999999999998765322333333222222222110 124799999999865321 2244567
Q ss_pred cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH----HHHHHHhcCCceecccccc
Q 012884 331 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS----LTEEILKIGCDKVTSETEL 406 (454)
Q Consensus 331 ~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~----l~~~l~~~g~~~~sa~~~~ 406 (454)
.+|++++|+|++.+...++...+...... .....++|+++|+||+|+......... .........+..+++....
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 89999999999987655555544111111 112357999999999999765332221 1122223455667777777
Q ss_pred cHHHHHHHHH
Q 012884 407 SSEDAVKSLS 416 (454)
Q Consensus 407 ~~~e~~~~l~ 416 (454)
++.+.++.+.
T Consensus 147 ~i~~~~~~l~ 156 (157)
T cd00882 147 NVEELFEELA 156 (157)
T ss_pred ChHHHHHHHh
Confidence 8888877653
No 182
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.48 E-value=2.2e-13 Score=135.11 Aligned_cols=125 Identities=20% Similarity=0.118 Sum_probs=85.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCC---CCc---c------------CCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK---PDI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~---~~I---a------------~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
.|+++|.+|+|||||+++|+... ..+ . ...++|++.....+.+. +.++.++|||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~liDTP 72 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--------DHRINIIDTP 72 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--------CEEEEEEECC
Confidence 37899999999999999996421 111 1 12244555444444432 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~~~ 387 (454)
|+.+ +.....+.++.+|++++|+|+..+...++.+.+ +.+.. .++|+++++||+|+... .+.+++
T Consensus 73 G~~d-------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~-~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~ 139 (270)
T cd01886 73 GHVD-------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVW-RQADR-----YNVPRIAFVNKMDRTGADFFRVVEQ 139 (270)
T ss_pred CcHH-------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 9854 334566788889999999999987655554444 44543 46899999999999753 234556
Q ss_pred HHHHHH
Q 012884 388 LTEEIL 393 (454)
Q Consensus 388 l~~~l~ 393 (454)
+++.+.
T Consensus 140 l~~~l~ 145 (270)
T cd01886 140 IREKLG 145 (270)
T ss_pred HHHHhC
Confidence 665554
No 183
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.47 E-value=2.1e-13 Score=143.28 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=94.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCcc-------------------------C------CCceeeeccceeeeCCCCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTLG 295 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia-------------------------~------~pfTT~~p~~g~v~~~~~~~ 295 (454)
..|+++|.+|+|||||+++|+.....+. + .+++|++.....++.+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~---- 82 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD---- 82 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC----
Confidence 4789999999999999999985543331 1 4678888777766643
Q ss_pred cccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCC--CCCHhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 012884 296 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVL 373 (454)
Q Consensus 296 ~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~--~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~ 373 (454)
..++.||||||+.+ +.......+..+|++++|+|+++ +...+..+.+ ..+..+ ..+|+++|+
T Consensus 83 ----~~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~-~~~~~~----~~~~iivvi 146 (425)
T PRK12317 83 ----KYYFTIVDCPGHRD-------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHV-FLARTL----GINQLIVAI 146 (425)
T ss_pred ----CeEEEEEECCCccc-------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH-HHHHHc----CCCeEEEEE
Confidence 24899999999733 33334455778999999999987 4333333332 223322 124689999
Q ss_pred eCCCCCCh-HHH----HHHHHHHHHhcCC-------ceecccccccHHH
Q 012884 374 NKIDLPEA-RDR----LQSLTEEILKIGC-------DKVTSETELSSED 410 (454)
Q Consensus 374 NK~Dl~~~-~e~----~~~l~~~l~~~g~-------~~~sa~~~~~~~e 410 (454)
||+|+.+. .+. .+++.+.+...++ .++++....++.+
T Consensus 147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred EccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 99999752 222 2344445544443 4567777766654
No 184
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=7.6e-14 Score=134.65 Aligned_cols=123 Identities=31% Similarity=0.434 Sum_probs=105.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.++|++||+|.+|||||++.|++....++.|.|||+..+.|++.+.. .++++.|.||+|++|+.+++.+++.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--------aKiqlldlpgiiegakdgkgrg~qv 130 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--------AKIQLLDLPGIIEGAKDGKGRGKQV 130 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--------cceeeecCcchhcccccCCCCccEE
Confidence 46899999999999999999999988999999999999999987763 4899999999999999999999999
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
+...+.|+++++|+|+..+ ....+++.+||+-+.-.+...|-=+..-|-|.
T Consensus 131 iavartcnli~~vld~~kp--~~hk~~ie~eleg~girlnk~pp~i~~kkKdk 181 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKP--LSHKKIIEKELEGFGIRLNKQPPNIGTKKKDK 181 (358)
T ss_pred EEEeecccEEEEEeeccCc--ccHHHHHHHhhhcceeeccCCCCCcccccccc
Confidence 9999999999999999865 56777888999876655555555555555443
No 185
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9.1e-13 Score=122.50 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=110.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|-++|-.+|||||||+++.-.+.. .+|--|- +|-....+.+... ..++++|||+|+.+ +....
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~~l~d~------~vrLQlWDTAGQER-------Frsli 88 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTMYLEDR------TVRLQLWDTAGQER-------FRSLI 88 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEEEEcCc------EEEEEEEecccHHH-------Hhhhh
Confidence 47789999999999999999754321 1221111 1222222332211 23799999999943 44445
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHH-HHhc--CCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-ILKI--GCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~-l~~~--g~~~~sa 402 (454)
-.+++.+.++|.|+|+++..++++...|.+.+...+.. .+.-+++|.||.||.+.++...+-.+. .+++ .+.++++
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsa 167 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSA 167 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC-CceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecc
Confidence 56789999999999999999999999998888865422 135567899999999876543332222 2223 4678899
Q ss_pred cccccHHHHHHHHHhhcCc
Q 012884 403 ETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~~ 421 (454)
.+..++++.|.++++.+-.
T Consensus 168 k~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 168 KAGENVKQLFRRIAAALPG 186 (221)
T ss_pred cCCCCHHHHHHHHHHhccC
Confidence 9999999999998876643
No 186
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.8e-13 Score=125.61 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=109.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC------CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 321 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~------~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l 321 (454)
+|.++|..|||||||+-++...+. .|+ -.|-|.. +..+.. ..+|.||||+|+.+. .+|
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIG-aaF~tkt-----v~~~~~------~ikfeIWDTAGQERy----~sl 70 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIG-AAFLTKT-----VTVDDN------TIKFEIWDTAGQERY----HSL 70 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCccccccccccc-cEEEEEE-----EEeCCc------EEEEEEEEcCCcccc----ccc
Confidence 677899999999999999865432 121 1233321 111110 237899999999654 233
Q ss_pred cchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCc
Q 012884 322 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCD 398 (454)
Q Consensus 322 g~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~ 398 (454)
.. -+++.++++|+|+|+++.++++..+.|..+|+.-.+ .+.-+.+|.||+||.+.++. .++....... +.+.
T Consensus 71 ap---MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ 145 (200)
T KOG0092|consen 71 AP---MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFF 145 (200)
T ss_pred cc---ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEE
Confidence 33 356889999999999999999999999999986442 24556679999999874432 4444444444 4567
Q ss_pred eecccccccHHHHHHHHHhhcCccc
Q 012884 399 KVTSETELSSEDAVKSLSTEGGEAD 423 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~~~~~ 423 (454)
++++.+..++.+.+..+...+-...
T Consensus 146 ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 146 ETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred EEecccccCHHHHHHHHHHhccCcc
Confidence 8999999999999999987765433
No 187
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.5e-13 Score=127.58 Aligned_cols=154 Identities=19% Similarity=0.083 Sum_probs=112.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCC-----CceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADY-----PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 320 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~-----pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~ 320 (454)
+-+|-++|-++||||-||.+++..+..+.+. .|.|+.. ..+.. ..+.+||||+|+.+.
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~-----~vd~k------~vkaqIWDTAGQERy------ 76 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTV-----NVDGK------TVKAQIWDTAGQERY------ 76 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeece-----eecCc------EEEEeeecccchhhh------
Confidence 4578899999999999999999876555332 2333322 22110 137899999999543
Q ss_pred ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCC
Q 012884 321 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGC 397 (454)
Q Consensus 321 lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~---~g~ 397 (454)
....-.+++.+-..++|+|++...+++.+..|+.||+.+.. .+.++++|.||+||.+.+....+-...+.+ +.+
T Consensus 77 -rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f 153 (222)
T KOG0087|consen 77 -RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFF 153 (222)
T ss_pred -ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHhcCceE
Confidence 22234566789999999999999999999999999997652 479999999999998744332222333333 567
Q ss_pred ceecccccccHHHHHHHHHhhc
Q 012884 398 DKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.++++....+++.+|..+.++.
T Consensus 154 ~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 154 LETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EEecccccccHHHHHHHHHHHH
Confidence 8899999999999998777655
No 188
>CHL00071 tufA elongation factor Tu
Probab=99.46 E-value=3.8e-13 Score=140.89 Aligned_cols=131 Identities=20% Similarity=0.171 Sum_probs=89.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc--------c--------CCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI--------A--------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I--------a--------~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
...|+++|.+|+|||||+++|++....+ + -..++|++.....+..+ ..++.|+|||
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------~~~~~~iDtP 83 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------NRHYAHVDCP 83 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC--------CeEEEEEECC
Confidence 3478999999999999999998752211 1 12567776654444322 2478999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH--
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ-- 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~~-- 386 (454)
|+. .+.....+.+..+|++++|+|+..+...++.+.+. .+.. .++| +|+|+||||+.+..+..+
T Consensus 84 Gh~-------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~-~~~~-----~g~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 84 GHA-------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL-LAKQ-----VGVPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred ChH-------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCEEEEEEEccCCCCHHHHHHHH
Confidence 973 24445567778899999999999876556555553 3442 3678 678999999987544333
Q ss_pred --HHHHHHHhcCC
Q 012884 387 --SLTEEILKIGC 397 (454)
Q Consensus 387 --~l~~~l~~~g~ 397 (454)
++.+.+...++
T Consensus 151 ~~~l~~~l~~~~~ 163 (409)
T CHL00071 151 ELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCC
Confidence 44455555544
No 189
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.9e-13 Score=124.88 Aligned_cols=156 Identities=17% Similarity=0.050 Sum_probs=111.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccc--eeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~--g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.++-++|..+||||.||-+++.. +.+..+. .|+-... ..+..+. ...+++||||+|+.. +..-
T Consensus 7 fKyIiiGd~gVGKSclllrf~~k-rF~~~hd-~TiGvefg~r~~~id~------k~IKlqiwDtaGqe~-------frsv 71 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDK-RFQPVHD-LTIGVEFGARMVTIDG------KQIKLQIWDTAGQES-------FRSV 71 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhcc-Ccccccc-ceeeeeeceeEEEEcC------ceEEEEEEecCCcHH-------HHHH
Confidence 46778999999999999999964 3333333 4442222 2233321 124799999999943 3333
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-Hhc--CCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKI--GCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l-~~~--g~~~~s 401 (454)
...+++.+..+|+|+|.+..+++..+..|+.+++.+. ..+..++++.||+||...++.-++--+.+ ++. -+.+++
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~--~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETS 149 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS--NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETS 149 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc--CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhh
Confidence 4456677999999999999999999999999998774 34678899999999987654433332222 223 345889
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+.+..+++++|...+.+.
T Consensus 150 akt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 150 AKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 999999999998877665
No 190
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.45 E-value=2.4e-13 Score=125.22 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=111.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-----cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 320 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-----a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~ 320 (454)
+.+|.+.|-+|+|||||+|++.+.+..- -...|-|.+..+ +.. ...++||||+|+.+. +.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-----d~~------~vtlQiWDTAGQERF----qs 73 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-----DDR------SVTLQIWDTAGQERF----QS 73 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-----cCe------EEEEEEEecccHHHh----hh
Confidence 4578899999999999999998764211 112344543221 110 136899999999665 33
Q ss_pred ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC-C-CCCCCEEEEEeCCCCCChH------HHHHHHHHHH
Q 012884 321 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-D-YLERPFIVVLNKIDLPEAR------DRLQSLTEEI 392 (454)
Q Consensus 321 lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~-~-~~~kp~IvV~NK~Dl~~~~------e~~~~l~~~l 392 (454)
|+. ..++.+|.+++|+|+..+.+.+.+..|++|+-.+.. . ...-|+||+.||+|+.... +..+.+...-
T Consensus 74 Lg~---aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~ 150 (210)
T KOG0394|consen 74 LGV---AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK 150 (210)
T ss_pred ccc---ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc
Confidence 443 346779999999999999999999999998876542 2 2357999999999997632 2233333333
Q ss_pred HhcCCceecccccccHHHHHHHHHhhc
Q 012884 393 LKIGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+.+.+++++...++.++|..+.+..
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHHH
Confidence 456788999999999999999887655
No 191
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.45 E-value=2.8e-13 Score=127.44 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=85.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC--CCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc--
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-- 323 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~--~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~-- 323 (454)
.|++||.||||||||+|+|++.+..... .+.+|...+....... +.++.++||||+.+.......+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~i~viDTPG~~d~~~~~~~~~~~i 73 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--------GRRVNVIDTPGLFDTSVSPEQLSKEI 73 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--------CeEEEEEECcCCCCccCChHHHHHHH
Confidence 5789999999999999999998765433 4567777666655432 358999999999875422222222
Q ss_pred --hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 324 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 324 --~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.+.......|++|+|+|+.. .+.++...+....+.+.+. .-+++++|+|++|....
T Consensus 74 ~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~-~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 74 VRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEK-VLDHTIVLFTRGDDLEG 131 (196)
T ss_pred HHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChH-hHhcEEEEEECccccCC
Confidence 23334567899999999987 5566655554433333321 23789999999997653
No 192
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.45 E-value=9.6e-13 Score=124.75 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=72.6
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC-HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~-~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.++.||||||+. .+...++..+..+|++++|+|++.+.. .+..+.+ ..+..+. .+|+++|+||+|+.
T Consensus 83 ~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~~----~~~iiivvNK~Dl~ 150 (203)
T cd01888 83 RHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIMG----LKHIIIVQNKIDLV 150 (203)
T ss_pred cEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHcC----CCcEEEEEEchhcc
Confidence 579999999973 345567777888999999999987432 2333333 3333221 35799999999998
Q ss_pred ChHH---HHHHHHHHHHh-----cCCceecccccccHHHHHHHHHhhc
Q 012884 380 EARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 380 ~~~e---~~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
...+ ..+++++.+.. ..+..+++....++.+.++.+...+
T Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 151 KEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 6432 23444444442 2356778899999999998887543
No 193
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=2.9e-13 Score=122.11 Aligned_cols=162 Identities=17% Similarity=0.046 Sum_probs=114.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceee--eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~--~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|-+||-.+|||||||-+++.... .+...||+ |.....+..+.. ..++.||||+|+.+. ..-
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~f--d~~~~~tIGvDFkvk~m~vdg~------~~KlaiWDTAGqErF-------RtL 76 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTF--DDLHPTTIGVDFKVKVMQVDGK------RLKLAIWDTAGQERF-------RTL 76 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhccc--CccCCceeeeeEEEEEEEEcCc------eEEEEEEeccchHhh-------hcc
Confidence 3566899999999999999986542 33334444 444444444321 248999999999543 223
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHh--cCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILK--IGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~--~g~~~~s 401 (454)
+-.+++.+..+++|+|++..+++..+..|.+|++.|... .+.-.++|.||+|...++..- ++=.+..++ .-+.+++
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~S 155 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECS 155 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcc
Confidence 345677899999999999999999999999999999744 356677899999976433221 111222222 3567899
Q ss_pred ccccccHHHHHHHHHhhcCcccc
Q 012884 402 SETELSSEDAVKSLSTEGGEADL 424 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~~~~ 424 (454)
+.+..++...|+.+.....+.+.
T Consensus 156 Akt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 156 AKTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred hhhhccHHHHHHHHHHHHhcCcc
Confidence 99999999999998876655443
No 194
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.8e-13 Score=119.34 Aligned_cols=159 Identities=17% Similarity=0.109 Sum_probs=116.6
Q ss_pred ccccccccccCCCCCHHHHHHHHHcCCCCccCCCceee--eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc
Q 012884 244 NIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 321 (454)
Q Consensus 244 k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~--~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l 321 (454)
+.+-+|.+||..++|||.|+.+++..-.. +--+.|+ +.-+.+++.... ..+++||||+|+.+ +
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfp--pgqgatigvdfmiktvev~ge------kiklqiwdtagqer-------f 69 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFP--PGQGATIGVDFMIKTVEVNGE------KIKLQIWDTAGQER-------F 69 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCC--CCCCceeeeeEEEEEEEECCe------EEEEEEeeccchHH-------H
Confidence 45678899999999999999999865322 1122333 333334443321 24799999999843 4
Q ss_pred cchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCc
Q 012884 322 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCD 398 (454)
Q Consensus 322 g~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~---~g~~ 398 (454)
......+++.++.+++|+|.+...++.-+-.|..|++.|.. ...--|+|.||+|+.+.+|.-+.+.+++.+ .-+.
T Consensus 70 rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfl 147 (213)
T KOG0095|consen 70 RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFL 147 (213)
T ss_pred HHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhh
Confidence 44455667789999999999998888888889999999862 345568899999999887776666666654 3467
Q ss_pred eecccccccHHHHHHHHHhhc
Q 012884 399 KVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++++....+++..|..++..+
T Consensus 148 etsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 148 ETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhcccchhhHHHHHHHHHHHH
Confidence 889888889888888776555
No 195
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.44 E-value=6.7e-13 Score=144.90 Aligned_cols=159 Identities=21% Similarity=0.197 Sum_probs=105.9
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCC---------------CceeeeccceeeeCCCCCCcccccccEEEecCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 310 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~---------------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPG 310 (454)
++.|++||.+++|||||+++|+.....+... .+.|+......+.+... .. ....+.||||||
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~-~g--~~~~l~liDTPG 79 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAK-DG--ETYVLNLIDTPG 79 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcC-CC--CEEEEEEEECCC
Confidence 5789999999999999999998754333211 13333322222222100 00 013789999999
Q ss_pred CccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHH
Q 012884 311 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSL 388 (454)
Q Consensus 311 ii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~l 388 (454)
+.+ +.....++++.||++|+|+|++++...+....|...+. .+.|+++|+||+|+.... +..+++
T Consensus 80 ~~d-------F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~~~el 146 (595)
T TIGR01393 80 HVD-------FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSADPERVKKEI 146 (595)
T ss_pred cHH-------HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHHHHHH
Confidence 954 33345677889999999999998877777666655443 368999999999997532 222344
Q ss_pred HHHHHhc--CCceecccccccHHHHHHHHHhhcC
Q 012884 389 TEEILKI--GCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 389 ~~~l~~~--g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
.+.+... .+..+++.+..++.+.++.+...+.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 3332211 1456899999999999999886653
No 196
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.44 E-value=5.8e-13 Score=123.38 Aligned_cols=151 Identities=20% Similarity=0.292 Sum_probs=99.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||+++|...+ +.. ...|...+...+.+. +..+.++|++|... +...+.
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~--~~~-~~pT~g~~~~~i~~~--------~~~~~~~d~gG~~~-------~~~~w~ 76 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGE--ISE-TIPTIGFNIEEIKYK--------GYSLTIWDLGGQES-------FRPLWK 76 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSS--EEE-EEEESSEEEEEEEET--------TEEEEEEEESSSGG-------GGGGGG
T ss_pred EEEEEECCCccchHHHHHHhhhcc--ccc-cCcccccccceeeeC--------cEEEEEEecccccc-------ccccce
Confidence 467899999999999999998643 211 222333334444443 23799999999733 333455
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hc------CCc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI------GCD 398 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~~------g~~ 398 (454)
.+++.+|++|||||+++....++.......+-. ++....+|++|++||+|+.+... .+++.+.+. .+ .+.
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~v~ 154 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWSVF 154 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcc-hhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceEEE
Confidence 677889999999999976543333322222221 22345799999999999986532 234444332 22 245
Q ss_pred eecccccccHHHHHHHHHh
Q 012884 399 KVTSETELSSEDAVKSLST 417 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~ 417 (454)
.+++.+..++.+.++++..
T Consensus 155 ~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 155 SCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHh
Confidence 6788999999999999874
No 197
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.43 E-value=8.9e-13 Score=128.40 Aligned_cols=126 Identities=23% Similarity=0.254 Sum_probs=83.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc---cCC-Ccee--------------eeccceeeeCCCCCCcccccccEEEecCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI---ADY-PFTT--------------LMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I---a~~-pfTT--------------~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
.|+++|.+|+|||||+++|+.....+ +.. ..+| +......+.+. +.++.+||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--------~~~i~liDTP 72 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--------DTKVNLIDTP 72 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--------CEEEEEEeCC
Confidence 37899999999999999998653222 110 1111 11122222221 3479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--hHHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARDRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~--~~e~~~~ 387 (454)
|+.+ +......+++.+|++++|+|++.+...+ .+.+++.+.. .++|+++|+||+|+.. ..+.+++
T Consensus 73 G~~~-------f~~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~ 139 (237)
T cd04168 73 GHMD-------FIAEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQE 139 (237)
T ss_pred Cccc-------hHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH-----cCCCEEEEEECccccCCCHHHHHHH
Confidence 9953 3334567788899999999999875443 3444455554 3689999999999985 3455667
Q ss_pred HHHHHHh
Q 012884 388 LTEEILK 394 (454)
Q Consensus 388 l~~~l~~ 394 (454)
+++.+..
T Consensus 140 i~~~~~~ 146 (237)
T cd04168 140 IKEKLSS 146 (237)
T ss_pred HHHHHCC
Confidence 7766654
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.43 E-value=6.1e-13 Score=144.69 Aligned_cols=120 Identities=23% Similarity=0.156 Sum_probs=76.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC-------cccc---cccEEEecCCCCcccccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG-------AEKY---SSEATLADLPGLIEGAHL 317 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~-------~~~~---~~~i~liDTPGii~~a~~ 317 (454)
-|+++|.+|+|||||||+|++.........++|.+.....+..+.... ...+ ...++||||||+..
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~---- 81 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA---- 81 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh----
Confidence 478999999999999999998754322223345432222221110000 0000 02489999999843
Q ss_pred CCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 318 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 318 ~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
+.....+.++.+|++++|+|++++...++++.+. .+.. .++|+++|+||+|+..
T Consensus 82 ---f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~l~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ---FTNLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred ---HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-HHHH-----cCCCEEEEEECCCccc
Confidence 2223344667899999999999866566665543 3332 3789999999999974
No 199
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.43 E-value=1.2e-12 Score=142.64 Aligned_cols=151 Identities=19% Similarity=0.111 Sum_probs=102.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
-|+++|.+|+|||||+++|++..... ....++|.+.....+.+. +..+.||||||+. .+...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--------~~~v~~iDtPGhe-------~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--------DYRLGFIDVPGHE-------KFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--------CEEEEEEECCCHH-------HHHHH
Confidence 37899999999999999999754211 123467776655555443 1378999999973 34445
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHH---HHHHHHHHHHhc-----
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILKI----- 395 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e---~~~~l~~~l~~~----- 395 (454)
++..+..+|++++|||++.+...+..+.+ ..+.. .+.| ++||+||+|+.+... ..+++.+.+...
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl-~il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~ 140 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHL-AVLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKN 140 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66777889999999999986544444443 23432 3677 999999999987532 122344444332
Q ss_pred -CCceecccccccHHHHHHHHHhhc
Q 012884 396 -GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 -g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.++++.+..++.+.+..+....
T Consensus 141 ~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 141 AKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CcEEEEeCCCCCCchhHHHHHHHHH
Confidence 345678888889888887766444
No 200
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.42 E-value=1.3e-12 Score=145.82 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=104.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
...|+++|..|+|||||+++|.+.+.....+.+.|.+.....+.+. +..++||||||+.. +....
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--------~~~ItfiDTPGhe~-------F~~m~ 354 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--------GGKITFLDTPGHEA-------FTAMR 354 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--------CEEEEEEECCCCcc-------chhHH
Confidence 3578999999999999999998765444556677766544444432 24799999999843 33344
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHH---HHh----cC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---ILK----IG 396 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~l~~~---l~~----~g 396 (454)
.+.+..+|++|+|||+.++...+..+.|. .+.. .+.|+|||+||+|+.... ....++.+. ... ..
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~-~a~~-----~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp 428 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAIN-HAKA-----AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTI 428 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHH-HHHh-----cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCce
Confidence 55678899999999999875555555543 3332 479999999999997531 222222211 011 23
Q ss_pred CceecccccccHHHHHHHHHh
Q 012884 397 CDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 397 ~~~~sa~~~~~~~e~~~~l~~ 417 (454)
+.++++.+..++.+.+..+..
T Consensus 429 ~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 429 FVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEEeCCCCCCchHHHHhhhh
Confidence 677899999999999888763
No 201
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.41 E-value=1.2e-13 Score=118.41 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=73.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC---c-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD---I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 323 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~---I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~ 323 (454)
+|.++|.+|||||||+++|.+.... . .+...++.......+..+ ...+.+||++|..+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~g~~~~~~------- 65 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD--------RQSLQFWDFGGQEEFYS------- 65 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE--------EEEEEEEEESSSHCHHC-------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC--------ceEEEEEecCccceecc-------
Confidence 4678999999999999999987654 1 222222222222222221 12588999999854321
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
.....+..+|++++|+|++++.+.+.+..+.+++..+.....+.|+++|+||.|
T Consensus 66 ~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 66 QHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp TSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 111227889999999999987777776555555554432224599999999998
No 202
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.41 E-value=7.8e-13 Score=126.87 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=75.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-------------------------------cCCCceeeeccceeeeCCCCCCc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLGA 296 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-------------------------------a~~pfTT~~p~~g~v~~~~~~~~ 296 (454)
.|+++|.+++|||||+.+|+...-.+ ....++|++.....+.+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 37899999999999999995331111 013356666666666543
Q ss_pred ccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-------CHhhHHHHHHHHHhcCCCCCCCCE
Q 012884 297 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLERPF 369 (454)
Q Consensus 297 ~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-------~~~d~~~l~~eL~~~~~~~~~kp~ 369 (454)
+.++.++||||+.+ +...+...+..+|++|+|||++++. ..+..+.+ ..+..+ ..+|+
T Consensus 76 ---~~~i~liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~i 140 (219)
T cd01883 76 ---KYRFTILDAPGHRD-------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL----GVKQL 140 (219)
T ss_pred ---CeEEEEEECCChHH-------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc----CCCeE
Confidence 24899999999843 2334566778899999999998742 12222222 222221 23789
Q ss_pred EEEEeCCCCCC
Q 012884 370 IVVLNKIDLPE 380 (454)
Q Consensus 370 IvV~NK~Dl~~ 380 (454)
|+|+||+|+..
T Consensus 141 iivvNK~Dl~~ 151 (219)
T cd01883 141 IVAVNKMDDVT 151 (219)
T ss_pred EEEEEcccccc
Confidence 99999999983
No 203
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.41 E-value=9.5e-13 Score=145.81 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=104.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+.|+++|.+|+|||||+++|.+........++.|.+.....+.+.. . .....++||||||+.. +....
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~--~--~~~~kItfiDTPGhe~-------F~~mr 312 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY--K--DENQKIVFLDTPGHEA-------FSSMR 312 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe--c--CCceEEEEEECCcHHH-------HHHHH
Confidence 46799999999999999999987765555555666554333322210 0 0124799999999832 33344
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHH---HHh----cC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEE---ILK----IG 396 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~l~~~---l~~----~g 396 (454)
.+.+..+|++|+|||+.++...+..+.+.. +.. .+.|+|||+||+|+.... +..+++... ... ..
T Consensus 313 ~rg~~~aDiaILVVDA~dGv~~QT~E~I~~-~k~-----~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vp 386 (742)
T CHL00189 313 SRGANVTDIAILIIAADDGVKPQTIEAINY-IQA-----ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTP 386 (742)
T ss_pred HHHHHHCCEEEEEEECcCCCChhhHHHHHH-HHh-----cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCce
Confidence 557788999999999988765555555533 332 478999999999997532 112222211 111 23
Q ss_pred CceecccccccHHHHHHHHHhh
Q 012884 397 CDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 397 ~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
+.++++.+..++.+.+..++..
T Consensus 387 vv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 387 MIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred EEEEECCCCCCHHHHHHhhhhh
Confidence 5678899999999999887754
No 204
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.41 E-value=9.7e-13 Score=117.27 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=114.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
+++..|+|.|++|||+|+-++... ....+|.-|+ .|..+.+++++.. ..+++||||+|... +...
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~------~VkLqIwDtAGqEr-------Frti 73 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGD------RVKLQIWDTAGQER-------FRTI 73 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCc------EEEEEEeecccHHH-------HHHH
Confidence 345668999999999999999765 3335554443 2555555555422 34899999999833 3334
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHhc--CCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKI--GCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~~--g~~~~s 401 (454)
.-.+++..+++++|+|.+.++++...+.|.++++... ...|-++|.||.|+++.+... ++.+.....+ .+.+++
T Consensus 74 tstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETS 150 (198)
T KOG0079|consen 74 TSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETS 150 (198)
T ss_pred HHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceecccCCCCccceeeehHHHHHHHHhcCchheehh
Confidence 4456788999999999999999999999988888644 368899999999998754332 2233333333 467899
Q ss_pred ccccccHHHHHHHHHhhcCc
Q 012884 402 SETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~ 421 (454)
+....++++.|+-+.....+
T Consensus 151 aKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 151 AKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhhcccchHHHHHHHHHHHH
Confidence 99999999999887765544
No 205
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.39 E-value=1.4e-12 Score=129.18 Aligned_cols=126 Identities=25% Similarity=0.266 Sum_probs=80.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC---C------Cceeeec-------------cceeeeCCCCCCcccccccE
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD---Y------PFTTLMP-------------NLGRLDGDPTLGAEKYSSEA 303 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~---~------pfTT~~p-------------~~g~v~~~~~~~~~~~~~~i 303 (454)
++.|+++|.+|+|||||+++|+.....+.. . ..|+.|. ....+.+. +.++
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------~~~i 73 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------DCVI 73 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC--------CEEE
Confidence 367899999999999999999854322211 1 1122211 11122221 3479
Q ss_pred EEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-
Q 012884 304 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR- 382 (454)
Q Consensus 304 ~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~- 382 (454)
.+|||||+.+ +.......++.+|++|+|+|++.+...+. +.+++.+.. .++|+++++||+|+..+.
T Consensus 74 ~liDTPG~~d-------f~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~~-----~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 74 NLLDTPGHED-------FSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCRL-----RGIPIITFINKLDREGRDP 140 (267)
T ss_pred EEEECCCchH-------HHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHHh-----cCCCEEEEEECCccCCCCH
Confidence 9999999843 22335567788999999999987654333 333344442 368999999999987642
Q ss_pred -HHHHHHHHHH
Q 012884 383 -DRLQSLTEEI 392 (454)
Q Consensus 383 -e~~~~l~~~l 392 (454)
+.++++++.+
T Consensus 141 ~~~~~~l~~~l 151 (267)
T cd04169 141 LELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHH
Confidence 2345555544
No 206
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.39 E-value=2.8e-12 Score=123.84 Aligned_cols=119 Identities=20% Similarity=0.153 Sum_probs=76.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC-CCce---------------eeeccceeeeCCCCC--CcccccccEEEecCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD-YPFT---------------TLMPNLGRLDGDPTL--GAEKYSSEATLADLP 309 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~-~pfT---------------T~~p~~g~v~~~~~~--~~~~~~~~i~liDTP 309 (454)
.|+++|..++|||||+.+|+.....+.. ..++ |+......+.+.... ........+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999999865432211 1111 211111112211000 000012378999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
|+.+ +......+++.+|++++|+|+..+...+..+.+..... .++|+++|+||+|+.
T Consensus 82 G~~~-------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD-------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK------ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc-------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECCCcc
Confidence 9954 44456778889999999999998776666555544333 368999999999986
No 207
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.39 E-value=1.8e-12 Score=144.08 Aligned_cols=128 Identities=20% Similarity=0.154 Sum_probs=89.4
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCc------cC------------CCceeeeccceeeeCCCCCCcccccccEEEe
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDI------AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 306 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~I------a~------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~li 306 (454)
.++.|+++|.+|+|||||+++|+.....+ .+ ..++|++.....+.+. +.++.|+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--------~~~i~li 80 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--------GHRINII 80 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--------CeEEEEE
Confidence 36799999999999999999997532221 11 2355666555555543 2489999
Q ss_pred cCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HH
Q 012884 307 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DR 384 (454)
Q Consensus 307 DTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~ 384 (454)
||||+.+. .....++++.+|++|+|+|+..+...++...+. .+.. .++|+++|+||+|+..+. +.
T Consensus 81 DTPG~~~~-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~-----~~~p~ivviNK~D~~~~~~~~~ 147 (689)
T TIGR00484 81 DTPGHVDF-------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWR-QANR-----YEVPRIAFVNKMDKTGANFLRV 147 (689)
T ss_pred ECCCCcch-------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHH-HHHH-----cCCCEEEEEECCCCCCCCHHHH
Confidence 99999542 224567788899999999999876666555554 3443 368999999999998642 33
Q ss_pred HHHHHHHHH
Q 012884 385 LQSLTEEIL 393 (454)
Q Consensus 385 ~~~l~~~l~ 393 (454)
++++.+.+.
T Consensus 148 ~~~i~~~l~ 156 (689)
T TIGR00484 148 VNQIKQRLG 156 (689)
T ss_pred HHHHHHHhC
Confidence 445554443
No 208
>PLN03127 Elongation factor Tu; Provisional
Probab=99.39 E-value=1.6e-12 Score=137.48 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=81.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcC------CCCc----------cCCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA------KPDI----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~------~~~I----------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
...|+++|.+|+|||||+++|++. ...+ ....++|++.....++.+ +.+++|+|||
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~~~i~~iDtP 132 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------KRHYAHVDCP 132 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------CeEEEEEECC
Confidence 357899999999999999999732 1111 112577777654444332 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~~ 386 (454)
|+.+ +.......+..+|++++|||+..+...++.+.+. .+.. .++| +|+|+||||+.+.++..+
T Consensus 133 Gh~~-------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~-~~~~-----~gip~iIvviNKiDlv~~~~~~~ 197 (447)
T PLN03127 133 GHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL-LARQ-----VGVPSLVVFLNKVDVVDDEELLE 197 (447)
T ss_pred Cccc-------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH-HHHH-----cCCCeEEEEEEeeccCCHHHHHH
Confidence 9842 3334445567799999999998876556555544 3443 3688 478899999986444333
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.38 E-value=2.1e-12 Score=127.49 Aligned_cols=124 Identities=23% Similarity=0.243 Sum_probs=80.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc---cCC-C--------------ceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI---ADY-P--------------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I---a~~-p--------------fTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
.|+++|.+|+|||||+++|......+ ... . +.|.......+.+. +.++++||||
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~liDtP 72 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--------GHKINLIDTP 72 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--------CEEEEEEECc
Confidence 37899999999999999997532211 110 1 12222333333322 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~~~ 387 (454)
|..+ +.......++.+|++++|+|++.+...+....| +.+.. .++|.++|+||+|+... .+.+++
T Consensus 73 G~~~-------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~-----~~~p~iivvNK~D~~~~~~~~~~~~ 139 (268)
T cd04170 73 GYAD-------FVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE-----AGIPRIIFINKMDRERADFDKTLAA 139 (268)
T ss_pred CHHH-------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECCccCCCCHHHHHHH
Confidence 9853 233456677889999999999987655544444 34443 36899999999998864 233445
Q ss_pred HHHHH
Q 012884 388 LTEEI 392 (454)
Q Consensus 388 l~~~l 392 (454)
+++.+
T Consensus 140 l~~~~ 144 (268)
T cd04170 140 LQEAF 144 (268)
T ss_pred HHHHh
Confidence 54444
No 210
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.38 E-value=4.3e-12 Score=120.80 Aligned_cols=125 Identities=14% Similarity=0.035 Sum_probs=82.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.++|.++||||||++++.+.... ..+..|. .+.....+.+...... .....+.||||+|..+. ....-
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~-~~~~~Tig~~~~~k~~~~~~~~~~-~~~~~l~IwDtaG~e~~-------~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL-GRPSWTVGCSVDVKHHTYKEGTPE-EKTFFVELWDVGGSESV-------KSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCcceeeeEEEEEEEEcCCCCC-CcEEEEEEEecCCchhH-------HHHHH
Confidence 5789999999999999999976432 2232222 1111222322210000 00126899999998432 22223
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC-----------------CCCCCCEEEEEeCCCCCCh
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-----------------DYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~-----------------~~~~kp~IvV~NK~Dl~~~ 381 (454)
.+++.+|++|+|+|.++..+.+.+..|.+++..... .....|++||+||+|+.+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 356789999999999999999999888888765321 1135899999999999764
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.38 E-value=3.7e-12 Score=121.45 Aligned_cols=117 Identities=22% Similarity=0.239 Sum_probs=74.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccC----------C---------CceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIAD----------Y---------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~----------~---------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
++|+++|.+++|||||+++|+.....+.. + .+.|.......+.+... . .....+.+||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-~--~~~~~i~iiD 77 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-K--GKSYLFNIID 77 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-C--CCEEEEEEEE
Confidence 36889999999999999999875433210 1 01122221111211100 0 0123789999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
|||+.+ +.......+..+|++|+|+|++.....+..+.+ +.+.. .++|+++|+||+|+.
T Consensus 78 tpG~~~-------f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~-~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 78 TPGHVN-------FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLI-RHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCCcc-------hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccC
Confidence 999854 333456677889999999999887655443333 33332 358999999999985
No 212
>PLN00023 GTP-binding protein; Provisional
Probab=99.37 E-value=4.6e-12 Score=128.03 Aligned_cols=127 Identities=18% Similarity=0.121 Sum_probs=82.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCC-------CCcccccccEEEecCCCCccccccC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPT-------LGAEKYSSEATLADLPGLIEGAHLG 318 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~-------~~~~~~~~~i~liDTPGii~~a~~~ 318 (454)
.+|.++|..+||||||+++|.+.... ..+..|. .+-....+.++.. .........+.||||+|..+.
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~-~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf---- 96 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSI-ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY---- 96 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcc-cccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh----
Confidence 47889999999999999999876432 2222221 1112222332210 000001136899999998432
Q ss_pred CcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC----------CCCCCCEEEEEeCCCCCCh
Q 012884 319 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----------DYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 319 ~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~----------~~~~kp~IvV~NK~Dl~~~ 381 (454)
....-.+++.+|++|+|+|+++..+.+.+..|.+++..+.. .....|++||+||+||...
T Consensus 97 ---rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 97 ---KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ---hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 22223457889999999999998888888888888876521 1125899999999999653
No 213
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.37 E-value=2.2e-12 Score=122.46 Aligned_cols=120 Identities=23% Similarity=0.297 Sum_probs=75.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
.|.++|.++||||||+++|...+.. ..+ ++..++...+..... .....+.||||||+.+ +...+..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~-~t~--~s~~~~~~~~~~~~~----~~~~~~~l~D~pG~~~-------~~~~~~~ 67 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR-STV--TSIEPNVATFILNSE----GKGKKFRLVDVPGHPK-------LRDKLLE 67 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--CcEeecceEEEeecC----CCCceEEEEECCCCHH-------HHHHHHH
Confidence 4678999999999999999876431 222 222344444332110 0124799999999853 3445566
Q ss_pred ccccc-cEEEEEEeCCCC-CCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 328 HLRRT-RLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 328 ~i~~a-dvll~ViDas~~-~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+++.+ +++|||+|++.. ....+.. .+...+........+.|++||+||+|+..+
T Consensus 68 ~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 68 TLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 77788 999999999885 3333322 222222211101147999999999998764
No 214
>PRK00007 elongation factor G; Reviewed
Probab=99.36 E-value=2.7e-12 Score=142.81 Aligned_cols=128 Identities=19% Similarity=0.129 Sum_probs=90.6
Q ss_pred cccccccccCCCCCHHHHHHHHHc---CCCCc---c------------CCCceeeeccceeeeCCCCCCcccccccEEEe
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITH---AKPDI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 306 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~---~~~~I---a------------~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~li 306 (454)
.+++|++||.+|+|||||+++|+. ....+ . ...++|++.....+.+. +.++.|+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--------~~~~~li 80 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------DHRINII 80 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--------CeEEEEE
Confidence 367999999999999999999963 22222 1 14456666665555543 3489999
Q ss_pred cCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HH
Q 012884 307 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DR 384 (454)
Q Consensus 307 DTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~ 384 (454)
||||+.+. .....+.++.+|++|+|+|+..+...++...+.. +.. .++|.|+++||||+..+. +.
T Consensus 81 DTPG~~~f-------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~-~~~-----~~~p~iv~vNK~D~~~~~~~~~ 147 (693)
T PRK00007 81 DTPGHVDF-------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ-ADK-----YKVPRIAFVNKMDRTGADFYRV 147 (693)
T ss_pred eCCCcHHH-------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHH-HHH-----cCCCEEEEEECCCCCCCCHHHH
Confidence 99998542 2346677888999999999998876777666554 443 478999999999998642 33
Q ss_pred HHHHHHHHH
Q 012884 385 LQSLTEEIL 393 (454)
Q Consensus 385 ~~~l~~~l~ 393 (454)
++++++.+.
T Consensus 148 ~~~i~~~l~ 156 (693)
T PRK00007 148 VEQIKDRLG 156 (693)
T ss_pred HHHHHHHhC
Confidence 444444443
No 215
>PRK12739 elongation factor G; Reviewed
Probab=99.35 E-value=2.5e-12 Score=143.01 Aligned_cols=127 Identities=20% Similarity=0.150 Sum_probs=89.1
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCC---Cc---cC------------CCceeeeccceeeeCCCCCCcccccccEEEe
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKP---DI---AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 306 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~---~I---a~------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~li 306 (454)
.++.|++||.+|+|||||+++|+.... .+ .+ ..++|++.....+.+. +.++.|+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~li 78 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------GHRINII 78 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--------CEEEEEE
Confidence 367899999999999999999975311 11 11 3355655555555443 2489999
Q ss_pred cCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHH
Q 012884 307 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDR 384 (454)
Q Consensus 307 DTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~ 384 (454)
||||+.+ +.....+.++.+|++|+|+|+..+...++...+.. +.. .++|.|+++||||+... .+.
T Consensus 79 DTPG~~~-------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~-~~~-----~~~p~iv~iNK~D~~~~~~~~~ 145 (691)
T PRK12739 79 DTPGHVD-------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQ-ADK-----YGVPRIVFVNKMDRIGADFFRS 145 (691)
T ss_pred cCCCHHH-------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHH-HHH-----cCCCEEEEEECCCCCCCCHHHH
Confidence 9999854 33356778889999999999998766666555543 443 46899999999999864 233
Q ss_pred HHHHHHHH
Q 012884 385 LQSLTEEI 392 (454)
Q Consensus 385 ~~~l~~~l 392 (454)
++++.+.+
T Consensus 146 ~~~i~~~l 153 (691)
T PRK12739 146 VEQIKDRL 153 (691)
T ss_pred HHHHHHHh
Confidence 44454444
No 216
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.35 E-value=8.2e-12 Score=136.82 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=102.9
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
||++|.+|+|||||+++|++.+... ....+.|++.....+.... +..+.||||||+. .+....
T Consensus 3 i~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-------g~~i~~IDtPGhe-------~fi~~m 68 (614)
T PRK10512 3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-------GRVLGFIDVPGHE-------KFLSNM 68 (614)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-------CcEEEEEECCCHH-------HHHHHH
Confidence 6889999999999999999754321 2234677765444443211 2368999999983 244455
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHH---HHHHHHHHHHhcC-----
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILKIG----- 396 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g----- 396 (454)
+..+..+|++++|||+..+...++.+.+ ..+.. .+.| +|||+||+|+.+... ..+++.+.+...+
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ 142 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAK 142 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6677889999999999886555555554 34443 3456 579999999986422 2344455554433
Q ss_pred CceecccccccHHHHHHHHHhhc
Q 012884 397 CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 397 ~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.++++.+..++.+.++.+....
T Consensus 143 ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 143 LFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhh
Confidence 45678889999999998887543
No 217
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=6.3e-12 Score=119.60 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=99.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||++++...... ..| .+|.........+.. .. -...+.+|||+|..+. .....
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~-~~~-~~t~~~~~~~~~~~~--~~--~~i~i~~~Dt~g~~~~-------~~~~~ 76 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFE-KKY-IPTLGVEVHPLKFYT--NC--GPICFNVWDTAGQEKF-------GGLRD 76 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCccceEEEEEEEEE--CC--eEEEEEEEECCCchhh-------hhhhH
Confidence 47899999999999999866543211 112 122222221211100 00 0237899999997432 11223
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceecccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~ 404 (454)
..+..++++++|+|.++..+...+..|...+.... .+.|+++|+||+|+.+.....+ ....... ..+.++++..
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQVKAR-QITFHRKKNLQYYDISAKS 152 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccCCHH-HHHHHHHcCCEEEEEeCCC
Confidence 34567899999999998877777777766666442 3689999999999865321111 1222222 3456788888
Q ss_pred cccHHHHHHHHHhhcCc
Q 012884 405 ELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~~~ 421 (454)
..++.+.+..+++.+..
T Consensus 153 ~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 153 NYNFEKPFLWLARRLTN 169 (215)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999988888876643
No 218
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.34 E-value=4.5e-12 Score=114.81 Aligned_cols=152 Identities=22% Similarity=0.233 Sum_probs=104.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|-++|.-||||||++++|.+.... |.+ |+-.++..+.++ ..++.+||.-|+ +.+...+.
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~--------~~~L~iwDvGGq-------~~lr~~W~ 78 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYK--------GYTLNIWDVGGQ-------KTLRSYWK 78 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEec--------ceEEEEEEcCCc-------chhHHHHH
Confidence 4558899999999999999987532 122 232233334433 238999999998 44556677
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh---HHHH--HHHHHHHHh--cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDRL--QSLTEEILK--IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~---~e~~--~~l~~~l~~--~g~~~ 399 (454)
.+.+.+|++|+|+|+++....++......++-. .+.+.+.|++|++||.|+..+ ++.. -.+.+.++. ..+..
T Consensus 79 nYfestdglIwvvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~ 157 (185)
T KOG0073|consen 79 NYFESTDGLIWVVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVK 157 (185)
T ss_pred HhhhccCeEEEEEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEE
Confidence 788999999999999987666655444444432 455678999999999999853 1111 112222232 34567
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++-+...+.+.+.++|..+
T Consensus 158 cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 158 CSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred EeccccccHHHHHHHHHHHH
Confidence 78889999999999998654
No 219
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.34 E-value=8.1e-12 Score=136.31 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=85.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC----------------CCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~----------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
++.|++||..++|||||+++|+.....+.. .-+.|+......+.+. +.++.|||||
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--------~~kinlIDTP 72 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--------GTKINIVDTP 72 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--------CEEEEEEECC
Confidence 357899999999999999999864222211 1133444433444432 2489999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~~~ 387 (454)
|+.+ +.....+.++.+|++|+|||++.+...+. +.++..+.. .+.|.|||+||+|+..+ .+..++
T Consensus 73 Gh~D-------F~~ev~~~l~~aD~alLVVDa~~G~~~qT-~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~e 139 (594)
T TIGR01394 73 GHAD-------FGGEVERVLGMVDGVLLLVDASEGPMPQT-RFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDE 139 (594)
T ss_pred CHHH-------HHHHHHHHHHhCCEEEEEEeCCCCCcHHH-HHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHH
Confidence 9843 44455677888999999999987643343 334444443 36899999999999753 234556
Q ss_pred HHHHHHh
Q 012884 388 LTEEILK 394 (454)
Q Consensus 388 l~~~l~~ 394 (454)
+.+.+..
T Consensus 140 i~~l~~~ 146 (594)
T TIGR01394 140 VFDLFAE 146 (594)
T ss_pred HHHHHHh
Confidence 6666543
No 220
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.34 E-value=7.2e-12 Score=137.02 Aligned_cols=160 Identities=23% Similarity=0.211 Sum_probs=104.4
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCcc---------C------CCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDIA---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~Ia---------~------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
.++.|+++|..++|||||+.+|+.....+. + .-+.|.......+.+... .. ....+.|||||
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~-dg--~~~~lnLiDTP 82 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK-DG--ETYILNLIDTP 82 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc-CC--CcEEEEEEECC
Confidence 367899999999999999999976432221 1 113333333333322100 00 02378999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~ 387 (454)
|+.+ +...+.++++.||++|+|||++.+...++...|..... .+.|+++|+||+|+.... +..++
T Consensus 83 Gh~d-------F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~~~v~~e 149 (600)
T PRK05433 83 GHVD-------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADPERVKQE 149 (600)
T ss_pred CcHH-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccHHHHHHH
Confidence 9955 33345667888999999999998766666666544333 368999999999997532 12233
Q ss_pred HHHHHHh--cCCceecccccccHHHHHHHHHhhcC
Q 012884 388 LTEEILK--IGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 388 l~~~l~~--~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+.+.+.- ..+..+++.+..++.+.++.+...+.
T Consensus 150 i~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 150 IEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3332211 01457899999999999999886653
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.34 E-value=5.4e-12 Score=131.68 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=83.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcC-----CCCc-----------cCCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA-----KPDI-----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~-----~~~I-----------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
-..|+++|.+|+|||||+++|++. +... ....++|++.....+..+ ..++.|+|||
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------~~~i~~iDtP 83 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------NRHYAHVDCP 83 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--------CcEEEEEECC
Confidence 347899999999999999999862 1110 013456665433333221 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCChHHHHH--
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ-- 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I-vV~NK~Dl~~~~e~~~-- 386 (454)
|+. .+.......+..+|++++|+|+..+...+..+.+ ..+.. .++|.+ +|+||+|+.+.++..+
T Consensus 84 Gh~-------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l-~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~~~ 150 (396)
T PRK12735 84 GHA-------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLELV 150 (396)
T ss_pred CHH-------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCeEEEEEEecCCcchHHHHHHH
Confidence 983 2444556777889999999999876544444444 33432 367866 5799999985433332
Q ss_pred --HHHHHHHhcC
Q 012884 387 --SLTEEILKIG 396 (454)
Q Consensus 387 --~l~~~l~~~g 396 (454)
++.+.+...+
T Consensus 151 ~~ei~~~l~~~~ 162 (396)
T PRK12735 151 EMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHHHHcC
Confidence 3444555544
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.33 E-value=5.4e-12 Score=131.61 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=86.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-------c---------CCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-------A---------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-------a---------~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
-..|+++|.+++|||||+++|++..... . -..++|++.....+... ..++.|+|||
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------~~~i~~iDtP 83 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------KRHYAHVDCP 83 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------CcEEEEEECC
Confidence 3478999999999999999998631100 0 13466666533333221 2478999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH--
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ-- 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~~-- 386 (454)
|+.+ +....+..+..+|++++|+|+..+...++.+.+.. +.. .++| +|+|+||||+.+.++..+
T Consensus 84 Gh~~-------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~-~~~-----~g~~~~IvviNK~D~~~~~~~~~~i 150 (394)
T PRK12736 84 GHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILL-ARQ-----VGVPYLVVFLNKVDLVDDEELLELV 150 (394)
T ss_pred CHHH-------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH-HHH-----cCCCEEEEEEEecCCcchHHHHHHH
Confidence 9742 33455666788999999999988655565555543 432 3678 678999999986544333
Q ss_pred --HHHHHHHhcCC
Q 012884 387 --SLTEEILKIGC 397 (454)
Q Consensus 387 --~l~~~l~~~g~ 397 (454)
++.+.+...++
T Consensus 151 ~~~i~~~l~~~~~ 163 (394)
T PRK12736 151 EMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHHhCC
Confidence 44455555553
No 223
>PRK10218 GTP-binding protein; Provisional
Probab=99.33 E-value=1.5e-11 Score=134.27 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=87.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCcc-C---------------CCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIA-D---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia-~---------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
+++|+++|..++|||||+++|+.....+. . ..+.|+......+.+. +.++.+||||
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~--------~~~inliDTP 76 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN--------DYRINIVDTP 76 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC--------CEEEEEEECC
Confidence 67899999999999999999986432221 1 1234444444444432 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~~~ 387 (454)
|+.+ +...+...++.+|++|+|+|++.+...+....|.. +.. .++|.++|+||+|+..+ .+.+++
T Consensus 77 G~~d-------f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~-a~~-----~gip~IVviNKiD~~~a~~~~vl~e 143 (607)
T PRK10218 77 GHAD-------FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKK-AFA-----YGLKPIVVINKVDRPGARPDWVVDQ 143 (607)
T ss_pred Ccch-------hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHH-HHH-----cCCCEEEEEECcCCCCCchhHHHHH
Confidence 9844 33445667889999999999988654444444433 332 47899999999999754 344556
Q ss_pred HHHHHHh
Q 012884 388 LTEEILK 394 (454)
Q Consensus 388 l~~~l~~ 394 (454)
+.+.+..
T Consensus 144 i~~l~~~ 150 (607)
T PRK10218 144 VFDLFVN 150 (607)
T ss_pred HHHHHhc
Confidence 6665543
No 224
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.33 E-value=6.4e-12 Score=137.01 Aligned_cols=119 Identities=21% Similarity=0.116 Sum_probs=72.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCC-ceeeeccceeeeCCCCC--Cc---c----cc-cccEEEecCCCCcccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYP-FTTLMPNLGRLDGDPTL--GA---E----KY-SSEATLADLPGLIEGA 315 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~p-fTT~~p~~g~v~~~~~~--~~---~----~~-~~~i~liDTPGii~~a 315 (454)
.-|+++|.+|+|||||+++|.+.... ...+ ..|.+.....+..+... .. . .+ ...++||||||+...
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~-~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f- 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVA-AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF- 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccc-cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH-
Confidence 35899999999999999999875422 2222 23322111111110000 00 0 00 013799999998432
Q ss_pred ccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 316 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 316 ~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.....+.+..+|++++|+|++++...+.++.+. .+.. .+.|+++|+||+|+.
T Consensus 85 ------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 85 ------TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-ILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred ------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-HHHH-----cCCCEEEEEECcCCc
Confidence 222334567799999999999865455555443 3332 478999999999986
No 225
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.33 E-value=4.4e-12 Score=114.84 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=114.2
Q ss_pred ccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeecccee------eeCCCCCCcccccccEEEecCCCCccccccCCccc
Q 012884 250 TDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGR------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 322 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~------v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg 322 (454)
-+||..-+|||+||..++..+-. ++ ||.+|+ ++..+. +..++++|||+|+. .+.
T Consensus 12 ivigdstvgkssll~~ft~gkfaels-------dptvgvdffarlie~~pg-----~riklqlwdtagqe-------rfr 72 (213)
T KOG0091|consen 12 IVIGDSTVGKSSLLRYFTEGKFAELS-------DPTVGVDFFARLIELRPG-----YRIKLQLWDTAGQE-------RFR 72 (213)
T ss_pred EEEcCCcccHHHHHHHHhcCcccccC-------CCccchHHHHHHHhcCCC-----cEEEEEEeeccchH-------HHH
Confidence 36899999999999999976532 22 455553 333321 34589999999994 345
Q ss_pred chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCce
Q 012884 323 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDK 399 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~---~g~~~ 399 (454)
..+..+++++-.+++|+|.++..+++.++.|..|..++-.+....-+.+|..|+||...++...+-.+.+.. +.+.+
T Consensus 73 sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVE 152 (213)
T KOG0091|consen 73 SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVE 152 (213)
T ss_pred HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEE
Confidence 556677888999999999999999999999999998876555556678899999998765544444444443 45788
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++++++..++.+.
T Consensus 153 TSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred ecccCCCcHHHHHHHHHHHH
Confidence 99999999999999887665
No 226
>PRK00049 elongation factor Tu; Reviewed
Probab=99.32 E-value=6.6e-12 Score=131.03 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=87.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC------c----------cCCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD------I----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~------I----------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
...|+++|.+++|||||+++|++.... . .-..++|++.....+..+ +.++.|+|||
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtP 83 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE--------KRHYAHVDCP 83 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC--------CeEEEEEECC
Confidence 357899999999999999999873110 0 014567776544333221 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCChHHHHH--
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ-- 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I-vV~NK~Dl~~~~e~~~-- 386 (454)
|+. .+.......+..+|++++|+|+..+...++.+.+ ..+.. .++|.+ +++||+|+.+..+..+
T Consensus 84 G~~-------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~-~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~~~ 150 (396)
T PRK00049 84 GHA-------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLELV 150 (396)
T ss_pred CHH-------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHH-HHHHH-----cCCCEEEEEEeecCCcchHHHHHHH
Confidence 984 2344455667889999999999886555555554 33443 368876 5899999986433332
Q ss_pred --HHHHHHHhcCC
Q 012884 387 --SLTEEILKIGC 397 (454)
Q Consensus 387 --~l~~~l~~~g~ 397 (454)
++.+.+...++
T Consensus 151 ~~~i~~~l~~~~~ 163 (396)
T PRK00049 151 EMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHHHHhcCC
Confidence 44455555444
No 227
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.31 E-value=1.6e-12 Score=129.15 Aligned_cols=156 Identities=29% Similarity=0.202 Sum_probs=113.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc--
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-- 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~-- 323 (454)
.+-|++||++|||||||+++|+.+...--+.-|.|+||..-...... +..+.+.||-|++..- ...|..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-------g~~vlltDTvGFisdL--P~~LvaAF 248 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-------GNFVLLTDTVGFISDL--PIQLVAAF 248 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-------CcEEEEeechhhhhhC--cHHHHHHH
Confidence 45689999999999999999996654446788999999877766543 3478999999998752 233433
Q ss_pred -hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcee
Q 012884 324 -NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV 400 (454)
Q Consensus 324 -~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~--~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~ 400 (454)
.+|.++..+|++|||+|++.++.+++.+.+...|...... .....+|-|-||+|.....- .-+..+....
T Consensus 249 ~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-------e~E~n~~v~i 321 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-------EEEKNLDVGI 321 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-------ccccCCcccc
Confidence 4577888999999999999999888888888888765421 11244777999999865321 0112234556
Q ss_pred cccccccHHHHHHHHHh
Q 012884 401 TSETELSSEDAVKSLST 417 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~ 417 (454)
++.++.+.++.+..+-+
T Consensus 322 saltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEET 338 (410)
T ss_pred ccccCccHHHHHHHHHH
Confidence 77777777776665543
No 228
>PLN03126 Elongation factor Tu; Provisional
Probab=99.31 E-value=7.9e-12 Score=133.18 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=87.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I----------------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
...|+++|.+|+|||||+++|+.....+ ....+.|++.....+..+ +.++.|+|||
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--------~~~i~liDtP 152 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--------NRHYAHVDCP 152 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------CcEEEEEECC
Confidence 4578999999999999999998632221 112344554433333322 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH--
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ-- 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~~-- 386 (454)
|+.+ +.......+..+|++++|||+..+...+..+.+. .+.. .++| +|+++||||+.+.++..+
T Consensus 153 Gh~~-------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~-~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~i 219 (478)
T PLN03126 153 GHAD-------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL-LAKQ-----VGVPNMVVFLNKQDQVDDEELLELV 219 (478)
T ss_pred CHHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCeEEEEEecccccCHHHHHHHH
Confidence 9843 3445566777899999999999876555545443 3443 3678 678999999987544333
Q ss_pred --HHHHHHHhcCC
Q 012884 387 --SLTEEILKIGC 397 (454)
Q Consensus 387 --~l~~~l~~~g~ 397 (454)
++.+.+...++
T Consensus 220 ~~~i~~~l~~~g~ 232 (478)
T PLN03126 220 ELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhcCC
Confidence 44455555544
No 229
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.31 E-value=7.6e-12 Score=131.66 Aligned_cols=145 Identities=17% Similarity=0.121 Sum_probs=91.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCcc-------------------------------CCCceeeeccceeeeCCCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTL 294 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia-------------------------------~~pfTT~~p~~g~v~~~~~~ 294 (454)
...|+++|.+++|||||+++|+.....+. ...++|++.....+..+
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~--- 83 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD--- 83 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC---
Confidence 35789999999999999999985322111 12356666655555443
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCH---hhHHHHHHHHHhcCCCCCCCCEEE
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV---NDYRTVKEELRMYNPDYLERPFIV 371 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~---~d~~~l~~eL~~~~~~~~~kp~Iv 371 (454)
...+.||||||+.+ +...++..+..+|++++|+|++.+... +..+.+ ..+... ..+++||
T Consensus 84 -----~~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~----~~~~iIV 146 (426)
T TIGR00483 84 -----KYEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL----GINQLIV 146 (426)
T ss_pred -----CeEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc----CCCeEEE
Confidence 24799999999732 334455667889999999999987322 221211 122221 1357899
Q ss_pred EEeCCCCCCh-HHH----HHHHHHHHHhcC-------CceecccccccHHH
Q 012884 372 VLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSED 410 (454)
Q Consensus 372 V~NK~Dl~~~-~e~----~~~l~~~l~~~g-------~~~~sa~~~~~~~e 410 (454)
|+||+|+.+. ++. .+++.+.+...+ +.++++....++.+
T Consensus 147 viNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 147 AINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9999999742 222 234444555444 34567777766654
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=9.9e-12 Score=129.59 Aligned_cols=130 Identities=20% Similarity=0.213 Sum_probs=85.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcC------CCC----c------cCCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA------KPD----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~------~~~----I------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
-..|+++|.+++|||||+++|++. ... . .-..++|++.....+... ..++.|+|||
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~--------~~~~~liDtp 83 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE--------NRHYAHVDCP 83 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC--------CEEEEEEECC
Confidence 357899999999999999999743 111 0 012566776543333221 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCChHHHHH--
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRLQ-- 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I-vV~NK~Dl~~~~e~~~-- 386 (454)
|+.+ +...++..+..+|++++|+|+..+...++.+.+.. +.. .+.|.+ +|+||||+.+.++..+
T Consensus 84 Gh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~-~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~~ 150 (394)
T TIGR00485 84 GHAD-------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILL-ARQ-----VGVPYIVVFLNKCDMVDDEELLELV 150 (394)
T ss_pred chHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH-HHH-----cCCCEEEEEEEecccCCHHHHHHHH
Confidence 9843 33455666778999999999988655555555443 432 367765 6899999986544333
Q ss_pred --HHHHHHHhcC
Q 012884 387 --SLTEEILKIG 396 (454)
Q Consensus 387 --~l~~~l~~~g 396 (454)
++.+.+...+
T Consensus 151 ~~~i~~~l~~~~ 162 (394)
T TIGR00485 151 EMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhcC
Confidence 4555555554
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.31 E-value=3.6e-11 Score=116.20 Aligned_cols=68 Identities=26% Similarity=0.194 Sum_probs=50.3
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccc--cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~--~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..+.++||||+.+ +....++.+. .+|++++|+|+..+...++.+.+. ++.. .++|+++|+||+|+
T Consensus 84 ~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~-~l~~-----~~ip~ivvvNK~D~ 150 (224)
T cd04165 84 KLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLG-LALA-----LNIPVFVVVTKIDL 150 (224)
T ss_pred cEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCEEEEEECccc
Confidence 4689999999843 3334455553 689999999998876666666554 3443 47899999999999
Q ss_pred CCh
Q 012884 379 PEA 381 (454)
Q Consensus 379 ~~~ 381 (454)
...
T Consensus 151 ~~~ 153 (224)
T cd04165 151 APA 153 (224)
T ss_pred cCH
Confidence 764
No 232
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1e-11 Score=110.66 Aligned_cols=155 Identities=12% Similarity=0.062 Sum_probs=107.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
-++-++|...+|||||+-+..+....++-+.---++-...++.-.. -..++++|||+|+.. +...+-
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~------kRiklQiwDTagqEr-------yrtiTT 88 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD------KRIKLQIWDTAGQER-------YRTITT 88 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc------cEEEEEEEecccchh-------hhHHHH
Confidence 4667899999999999999887643332211111222222222111 124799999999843 333455
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
.+++.++.+++++|.+..++...++.|.-.++.|. ..+.|+|+|.||||+.+++-. .+.-+....++ .+.++++.
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK 166 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAK 166 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccc
Confidence 67899999999999999888888888887888775 458999999999999875422 22333333444 45788888
Q ss_pred ccccHHHHHHHHH
Q 012884 404 TELSSEDAVKSLS 416 (454)
Q Consensus 404 ~~~~~~e~~~~l~ 416 (454)
...++++.++++.
T Consensus 167 ~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 167 ENINVKQVFERLV 179 (193)
T ss_pred ccccHHHHHHHHH
Confidence 8999999888765
No 233
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.28 E-value=6.7e-12 Score=138.32 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=89.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccC-----------CCceeeec----------------------cceeeeCCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIAD-----------YPFTTLMP----------------------NLGRLDGDPT 293 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~-----------~pfTT~~p----------------------~~g~v~~~~~ 293 (454)
.+|+++|.+|+|||||+++|+.....|.. ..+||+++ ....+...
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~-- 102 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP-- 102 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC--
Confidence 46899999999999999999876554421 24444332 22222211
Q ss_pred CCcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 012884 294 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 373 (454)
Q Consensus 294 ~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~ 373 (454)
+.+++|+||||+.+ +.......+..+|++++|||+..+...++.+.+. .+... ..+++|||+
T Consensus 103 ------~~~~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~----~~~~iivvv 164 (632)
T PRK05506 103 ------KRKFIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL----GIRHVVLAV 164 (632)
T ss_pred ------CceEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh----CCCeEEEEE
Confidence 24799999999743 3333445678899999999998765444443332 23322 136788999
Q ss_pred eCCCCCC-hHHHHHHHHHH----HHhcCC-----ceecccccccHH
Q 012884 374 NKIDLPE-ARDRLQSLTEE----ILKIGC-----DKVTSETELSSE 409 (454)
Q Consensus 374 NK~Dl~~-~~e~~~~l~~~----l~~~g~-----~~~sa~~~~~~~ 409 (454)
||+|+.+ .++.++++..+ +...++ .++++....++.
T Consensus 165 NK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~ 210 (632)
T PRK05506 165 NKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVV 210 (632)
T ss_pred EecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcc
Confidence 9999975 23333433333 334443 445666666654
No 234
>PRK09866 hypothetical protein; Provisional
Probab=99.28 E-value=4.1e-11 Score=129.12 Aligned_cols=113 Identities=23% Similarity=0.331 Sum_probs=75.8
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.+++|+||||+.+..+ ..+.....+.++.+|+||||+|+.......+... .+.+...+ ...|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeI-lk~Lkk~~---K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQLARASAVLAVLDYTQLKSISDEEV-REAILAVG---QSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHH-HHHHHhcC---CCCCEEEEEEcccCCC
Confidence 4689999999975321 2244455668999999999999987655555444 45566432 1259999999999975
Q ss_pred h----HHHHHHH-HHHHHh-----cCCceecccccccHHHHHHHHHhhc
Q 012884 381 A----RDRLQSL-TEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~----~e~~~~l-~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
. .+.+..+ ...+.. ..+.++|+....+..+.+..+....
T Consensus 304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 2 1222222 223332 1356789999999999998887544
No 235
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=116.63 Aligned_cols=158 Identities=17% Similarity=0.110 Sum_probs=113.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|.++|.+|+|||+|+.++.... .+.+|..|.-+.....+..+.. .-.+.|+||+|..+.. ..--.
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~~-f~~~y~ptied~y~k~~~v~~~------~~~l~ilDt~g~~~~~-------~~~~~ 70 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLTGR-FVEDYDPTIEDSYRKELTVDGE------VCMLEILDTAGQEEFS-------AMRDL 70 (196)
T ss_pred EEEEECCCCCCcchheeeecccc-cccccCCCccccceEEEEECCE------EEEEEEEcCCCcccCh-------HHHHH
Confidence 67889999999999999988543 4556666665555555544421 1268899999964432 12224
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH----HHHHHHHHHhcCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~----~~~l~~~l~~~g~~~~sa~ 403 (454)
+++.++..++|++.++..++++...+++.+. ........|+++|+||+|+...++. .+.+...+ ...+.++++.
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~-r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~-~~~f~E~Sak 148 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQIL-RVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSW-GCAFIETSAK 148 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHH-HhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhc-CCcEEEeecc
Confidence 5778899999999999999999988888883 2223345899999999999874332 22332222 2347799999
Q ss_pred ccccHHHHHHHHHhhcCc
Q 012884 404 TELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~~ 421 (454)
....+.++|+.+.++...
T Consensus 149 ~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 149 LNYNVDEVFYELVREIRL 166 (196)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 236
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=1.1e-11 Score=115.83 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=68.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
.|-|+|.+|+|||+|+..|...+.. -..|...++..... .. .....+.++|+||+. .+...++.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~---~T~tS~e~n~~~~~-~~-----~~~~~~~lvD~PGH~-------rlr~~~~~ 68 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTV---PTVTSMENNIAYNV-NN-----SKGKKLRLVDIPGHP-------RLRSKLLD 68 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEECCG-SS-----TCGTCECEEEETT-H-------CCCHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcC---CeeccccCCceEEe-ec-----CCCCEEEEEECCCcH-------HHHHHHHH
Confidence 3568999999999999999986321 12233344443221 10 113579999999994 35555555
Q ss_pred c---cccccEEEEEEeCCCC--CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 328 H---LRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 328 ~---i~~advll~ViDas~~--~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
. +..+..||||||++.. +..+..+.|...|..-.......|++|++||.|+..+
T Consensus 69 ~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 69 ELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 4 8889999999999741 1111223333333321112357899999999999875
No 237
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.26 E-value=2.8e-11 Score=126.66 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=96.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeee--------------CCCCCCc---c-cccccEEEe
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLD--------------GDPTLGA---E-KYSSEATLA 306 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~--------------~~~~~~~---~-~~~~~i~li 306 (454)
.|+++|.+++|||||+++|++..... .-..+.|.+.....+. ....... . .....+.++
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 85 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFV 85 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEE
Confidence 67899999999999999998642111 0011223221111110 0000000 0 012479999
Q ss_pred cCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--
Q 012884 307 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-- 383 (454)
Q Consensus 307 DTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-- 383 (454)
||||+.+ +...+...+..+|++++|||++.+. ..+..+.+. .+... ..+++++|+||+|+.+.++
T Consensus 86 DtPGh~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~----gi~~iIVvvNK~Dl~~~~~~~ 153 (406)
T TIGR03680 86 DAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII----GIKNIVIVQNKIDLVSKEKAL 153 (406)
T ss_pred ECCCHHH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc----CCCeEEEEEEccccCCHHHHH
Confidence 9999833 4445666777899999999999764 233333332 33322 1367899999999986432
Q ss_pred -HHHHHHHHHHh-----cCCceecccccccHHHHHHHHHhhc
Q 012884 384 -RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 384 -~~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+++.+.+.. ..+.++++....++.+.++.+...+
T Consensus 154 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 154 ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 23444444432 2345678889999999999988654
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.26 E-value=1.7e-11 Score=130.63 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=88.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC-----------CCce----------------------eeeccceeeeCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD-----------YPFT----------------------TLMPNLGRLDGDP 292 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~-----------~pfT----------------------T~~p~~g~v~~~~ 292 (454)
..+|+++|.+++|||||+++|+.....|.. ..++ |++.....+..+
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~- 105 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE- 105 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC-
Confidence 357899999999999999999866443321 0222 233322222221
Q ss_pred CCCcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEE
Q 012884 293 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV 372 (454)
Q Consensus 293 ~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV 372 (454)
..++.|+||||+. .+.......+..+|++|+|||+..+...++.+.+. .+... ..+++|+|
T Consensus 106 -------~~~i~~iDTPGh~-------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l----g~~~iIvv 166 (474)
T PRK05124 106 -------KRKFIIADTPGHE-------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL----GIKHLVVA 166 (474)
T ss_pred -------CcEEEEEECCCcH-------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh----CCCceEEE
Confidence 2479999999963 24444555678899999999998765444333322 22221 13578999
Q ss_pred EeCCCCCCh-HHHHHHHHHHH----HhcC------CceecccccccHHH
Q 012884 373 LNKIDLPEA-RDRLQSLTEEI----LKIG------CDKVTSETELSSED 410 (454)
Q Consensus 373 ~NK~Dl~~~-~e~~~~l~~~l----~~~g------~~~~sa~~~~~~~e 410 (454)
+||+|+.+. .+.++++.+.+ ...+ +.++++....++.+
T Consensus 167 vNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 167 VNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred EEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 999999853 23344444333 3332 34566666666543
No 239
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.24 E-value=5e-11 Score=107.20 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=94.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.+||..+||||||+++|.+.+.. |.- |. .+.+ .. .++||||-.- ++..+-+..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~---~~K-Tq-----~i~~---------~~--~~IDTPGEyi---E~~~~y~aLi 58 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR---YKK-TQ-----AIEY---------YD--NTIDTPGEYI---ENPRFYHALI 58 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC---cCc-cc-----eeEe---------cc--cEEECChhhe---eCHHHHHHHH
Confidence 46789999999999999999986532 111 11 1111 11 4599999632 2233444455
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---ceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~---~~~sa~ 403 (454)
.....||+|++|.|++.+.....-. .... ..+|+|-|+||+|+....+..+...+.|...|+ ..+++.
T Consensus 59 ~ta~dad~V~ll~dat~~~~~~pP~----fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRSVFPPG----FASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHhhCCEEEEEecCCCCCccCCch----hhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 5567899999999999853222111 1222 369999999999999555667778888887765 457888
Q ss_pred ccccHHHHHHHH
Q 012884 404 TELSSEDAVKSL 415 (454)
Q Consensus 404 ~~~~~~e~~~~l 415 (454)
+..++++...++
T Consensus 130 ~~eGi~eL~~~L 141 (143)
T PF10662_consen 130 TGEGIEELKDYL 141 (143)
T ss_pred CCcCHHHHHHHH
Confidence 899999888776
No 240
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.23 E-value=2.1e-11 Score=119.73 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=79.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc---CCccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---GKGLG 322 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~---~~~lg 322 (454)
.+|+++|.+|||||||+|+|++... .++.+..+|..........+ +.++.++||||+.+.... ++...
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--------g~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--------GFKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--------CeEEEEEECCCcCcchhhHHHHHHHH
Confidence 4789999999999999999999875 34667777776554443322 247999999999865321 11111
Q ss_pred chhhcccc--cccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 323 RNFLRHLR--RTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 323 ~~fl~~i~--~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
....++++ ..+++++|..+.. .....+...+....+.+... .-+.+++|+||+|...
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~-i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS-IWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh-hHhCEEEEEeCCccCC
Confidence 11222332 5788999976654 23344444444333334322 2367999999999864
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.23 E-value=4.1e-11 Score=129.18 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=81.7
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCc---cCC------Cceee-------------eccceeeeCCCCCCccccccc
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDI---ADY------PFTTL-------------MPNLGRLDGDPTLGAEKYSSE 302 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~I---a~~------pfTT~-------------~p~~g~v~~~~~~~~~~~~~~ 302 (454)
.++.|+++|.+|+|||||+++|+.....+ +.. ..++. ......+.+. +.+
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~--------~~~ 80 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR--------DCL 80 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--------CEE
Confidence 36789999999999999999997422111 111 11111 1111122221 247
Q ss_pred EEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH
Q 012884 303 ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 382 (454)
Q Consensus 303 i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~ 382 (454)
+.+|||||+.+ +.....++++.+|++|+|+|++.+...+. +.+++.+.. .++|+++++||+|+....
T Consensus 81 inliDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~~l~~~~~~-----~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 81 INLLDTPGHED-------FSEDTYRTLTAVDSALMVIDAAKGVEPQT-RKLMEVCRL-----RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred EEEEECCCchh-------hHHHHHHHHHHCCEEEEEEecCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECCcccccC
Confidence 99999999843 33345667888999999999988654433 334444443 479999999999987542
Q ss_pred --HHHHHHHHHHH
Q 012884 383 --DRLQSLTEEIL 393 (454)
Q Consensus 383 --e~~~~l~~~l~ 393 (454)
+.++++++.+.
T Consensus 148 ~~~~l~~i~~~l~ 160 (526)
T PRK00741 148 PLELLDEIEEVLG 160 (526)
T ss_pred HHHHHHHHHHHhC
Confidence 33455555443
No 242
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.22 E-value=5.9e-11 Score=111.99 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=67.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cC----CCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 322 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~----~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg 322 (454)
+|+++|.+|||||||+|+|++..... .. ...+|... ..+... . ...+.+|||||+.+.... .
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~------~-~~~l~l~DtpG~~~~~~~----~ 69 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHP------K-FPNVTLWDLPGIGSTAFP----P 69 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecC------C-CCCceEEeCCCCCcccCC----H
Confidence 57899999999999999999854311 11 11122211 111110 0 136899999999653211 1
Q ss_pred chhhcc--cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 323 RNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 323 ~~fl~~--i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..+++. +..+|++++|.|.. ....+... .+++..+ ++|+++|+||+|+..
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~~~--~~~~d~~~-~~~l~~~-----~~~~ilV~nK~D~~~ 121 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISSTR--FSSNDVKL-AKAIQCM-----GKKFYFVRTKVDRDL 121 (197)
T ss_pred HHHHHHhCccCcCEEEEEeCCC--CCHHHHHH-HHHHHHh-----CCCEEEEEecccchh
Confidence 122222 46789998886532 33444443 3456542 689999999999853
No 243
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.22 E-value=5e-11 Score=112.85 Aligned_cols=156 Identities=21% Similarity=0.128 Sum_probs=98.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceee--eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~--~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|.++|.+|||||||+++|.+..... .|+.|.. .+......... ..++.+|||+|+.+. ...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~-------~~~~~~~Dt~gq~~~-------~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAKTIEPYRR-------NIKLQLWDTAGQEEY-------RSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc-cCCCceeeeeEEEEEEeCCC-------EEEEEeecCCCHHHH-------HHH
Confidence 478899999999999999999765432 1222222 11111111100 126899999999653 223
Q ss_pred hhcccccccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHH------------
Q 012884 325 FLRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE------------ 391 (454)
Q Consensus 325 fl~~i~~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~------------ 391 (454)
+-.+...++++++|+|.+. ....+..+.|..++....+ ...|+++|.||+|+.........+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP 148 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHh
Confidence 3345678999999999998 4445555666667665432 368999999999998764322211111
Q ss_pred ---HH---hcCCceeccc--ccccHHHHHHHHHhhc
Q 012884 392 ---IL---KIGCDKVTSE--TELSSEDAVKSLSTEG 419 (454)
Q Consensus 392 ---l~---~~g~~~~sa~--~~~~~~e~~~~l~~~~ 419 (454)
.. ...+..+++. ...++.+.+......+
T Consensus 149 ~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 149 KAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred HHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 01 1124566666 7777887777766555
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.21 E-value=4.3e-11 Score=125.30 Aligned_cols=142 Identities=19% Similarity=0.200 Sum_probs=87.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC-------------------C--------------CceeeeccceeeeCCCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD-------------------Y--------------PFTTLMPNLGRLDGDPTL 294 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~-------------------~--------------pfTT~~p~~g~v~~~~~~ 294 (454)
+|.++|.+++|||||+++|+.....+.. + -+.|++.....+...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 5789999999999999999755333211 0 122344333333322
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 374 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~N 374 (454)
+.++.|+||||+.+ +.......+..+|++|+|||+..+...+..+.+. .+... ..+++++|+|
T Consensus 79 -----~~~~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~----~~~~iivviN 141 (406)
T TIGR02034 79 -----KRKFIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL----GIRHVVLAVN 141 (406)
T ss_pred -----CeEEEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc----CCCcEEEEEE
Confidence 24799999999743 3344556778899999999998875555444332 23322 1346888999
Q ss_pred CCCCCCh-HHHHHHHHHH----HHhcC-----CceecccccccHH
Q 012884 375 KIDLPEA-RDRLQSLTEE----ILKIG-----CDKVTSETELSSE 409 (454)
Q Consensus 375 K~Dl~~~-~e~~~~l~~~----l~~~g-----~~~~sa~~~~~~~ 409 (454)
|||+.+. .+.++++.+. +...+ +.++++....++.
T Consensus 142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV 186 (406)
T ss_pred ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence 9999753 2333333333 33333 3355666666554
No 245
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.21 E-value=7.1e-11 Score=127.37 Aligned_cols=128 Identities=21% Similarity=0.228 Sum_probs=81.8
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCc---cCC------Cceeee-------------ccceeeeCCCCCCccccccc
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDI---ADY------PFTTLM-------------PNLGRLDGDPTLGAEKYSSE 302 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~I---a~~------pfTT~~-------------p~~g~v~~~~~~~~~~~~~~ 302 (454)
.++.|++||.+|+|||||+++|+.....| +.. ..|+.| .....+++. +.+
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~--------~~~ 81 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR--------DCL 81 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC--------CeE
Confidence 36789999999999999999986322111 110 112211 111122221 247
Q ss_pred EEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--
Q 012884 303 ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE-- 380 (454)
Q Consensus 303 i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~-- 380 (454)
+.|+||||+.+ +.....+.++.+|++|+|+|++.+...+ .+.+++.+.. .++|+++++||+|+..
T Consensus 82 inliDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-----~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 82 VNLLDTPGHED-------FSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTRL-----RDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred EEEEECCChhh-------HHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh-----cCCCEEEEEECccccCCC
Confidence 99999999942 3344567788899999999998864333 3344444443 4689999999999964
Q ss_pred hHHHHHHHHHHHH
Q 012884 381 ARDRLQSLTEEIL 393 (454)
Q Consensus 381 ~~e~~~~l~~~l~ 393 (454)
..+.++++++.+.
T Consensus 149 ~~~ll~~i~~~l~ 161 (527)
T TIGR00503 149 PLELLDEVENELK 161 (527)
T ss_pred HHHHHHHHHHHhC
Confidence 3344556655544
No 246
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.21 E-value=6.7e-11 Score=115.80 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=90.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|-++|.+|||||||+|+|...+. .++..+-+|..+..-...++ ++.++||||||+.++...+..+...++
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~--------~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD--------GENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred eEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc--------ccceEEecCCCcccchhhhHHHHHHHH
Confidence 455889999999999999985443 33445545544443333333 247999999999876554444556678
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..+.+.|++++++|+.++.--.|++.+++.+..- .++++++|+|.+|...
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAE 162 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhc
Confidence 8889999999999999987777888887766642 3599999999999764
No 247
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.21 E-value=3.4e-11 Score=109.50 Aligned_cols=68 Identities=26% Similarity=0.278 Sum_probs=49.9
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~ 376 (454)
..+.|+||||+........ ..+.+.+..+|++|+|+|+.......+...+.+.+... ...+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-----KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-----CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-----CCeEEEEEcCC
Confidence 3599999999976433322 34556668899999999999877667777777766642 45599999995
No 248
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.20 E-value=2.2e-10 Score=118.25 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=100.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC----CCC-----------c-cCCCc---eeeeccc---eeeeCCCCCCcccccccEEE
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA----KPD-----------I-ADYPF---TTLMPNL---GRLDGDPTLGAEKYSSEATL 305 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~----~~~-----------I-a~~pf---TT~~p~~---g~v~~~~~~~~~~~~~~i~l 305 (454)
-||+||+-|+|||||+|+|.+. +.. + ++.++ ||.+|.. ..++..... ...-++.+
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~---~~~~~Vrl 95 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININE---GTKFKVRL 95 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccC---CCcccEEE
Confidence 4799999999999999999987 433 3 67788 8888877 444432210 11237999
Q ss_pred ecCCCCccccccCCcccch----------------------hhcccc-cccEEEEEE-eCCC-----CCCHhhHHHHHHH
Q 012884 306 ADLPGLIEGAHLGKGLGRN----------------------FLRHLR-RTRLLVHVI-DAAA-----ENPVNDYRTVKEE 356 (454)
Q Consensus 306 iDTPGii~~a~~~~~lg~~----------------------fl~~i~-~advll~Vi-Das~-----~~~~~d~~~l~~e 356 (454)
+||+|+......+.--... +.+.|. ++|+.|+|. |.+- ....+.-+.+.++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999998755544322222 455666 899999999 8862 1223334455677
Q ss_pred HHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-HhcCCceecccccccHHHHHHHHH
Q 012884 357 LRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIGCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 357 L~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l-~~~g~~~~sa~~~~~~~e~~~~l~ 416 (454)
|+. .++|+++|+||+|-.... ..++.+.+ .+++.+.........-++.+..+.
T Consensus 176 Lk~-----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il 229 (492)
T TIGR02836 176 LKE-----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVL 229 (492)
T ss_pred HHh-----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHH
Confidence 775 479999999999943221 23333333 334555444444444444444443
No 249
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.19 E-value=1.1e-10 Score=112.89 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=71.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC--CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~--~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
-|+++|.+|+|||||+|+|.+... .+....++. ..+.. ...++.++||||.. ...
T Consensus 41 ~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~--------~~~~i~~vDtPg~~----------~~~ 97 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTG--------KKRRLTFIECPNDI----------NAM 97 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEec--------CCceEEEEeCCchH----------HHH
Confidence 478999999999999999986521 112222210 01111 13479999999864 245
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCChHH
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARD 383 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I-vV~NK~Dl~~~~e 383 (454)
+..++.+|++++|+|++.+...++... ...+.. .++|.+ +|+||+|+....+
T Consensus 98 l~~ak~aDvVllviDa~~~~~~~~~~i-~~~l~~-----~g~p~vi~VvnK~D~~~~~~ 150 (225)
T cd01882 98 IDIAKVADLVLLLIDASFGFEMETFEF-LNILQV-----HGFPRVMGVLTHLDLFKKNK 150 (225)
T ss_pred HHHHHhcCEEEEEEecCcCCCHHHHHH-HHHHHH-----cCCCeEEEEEeccccCCcHH
Confidence 566788999999999987766655544 344543 257755 5999999975433
No 250
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.17 E-value=1.3e-10 Score=122.04 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=99.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeCC------------CC--CC--c--ccccccEEE
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGD------------PT--LG--A--EKYSSEATL 305 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~~------------~~--~~--~--~~~~~~i~l 305 (454)
..|+++|..++|||||+.+|++..... .-..+.|++......... .. .. . ..+..++.|
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 468999999999999999997641110 112245554332221110 00 00 0 001247999
Q ss_pred ecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH
Q 012884 306 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR 384 (454)
Q Consensus 306 iDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~ 384 (454)
+||||+. .+...++..+..+|++++|+|++.+. ..+..+.+ ..+... ..+|+++|+||+|+.+..+.
T Consensus 90 iDtPG~~-------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~----~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 90 VDAPGHE-------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII----GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EECCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc----CCCcEEEEEEeeccccchhH
Confidence 9999973 34455667777889999999999764 23333433 334332 13578999999999864332
Q ss_pred ---HHHHHHHHHh-----cCCceecccccccHHHHHHHHHhhc
Q 012884 385 ---LQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 385 ---~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+++.+.+.. ..+.++++....++.+.++.+...+
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 2344444432 2345678889999999998887544
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.17 E-value=1e-10 Score=130.14 Aligned_cols=127 Identities=24% Similarity=0.203 Sum_probs=84.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc---cCC---------------CceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I---a~~---------------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
+++|+++|..|+|||||+++|+.....+ ..+ -..|+......+.+. ..++.+||
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~liD 79 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--------NHRINLID 79 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--------CEEEEEEE
Confidence 5789999999999999999997542211 110 112222222233322 34799999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHH
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL 385 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~ 385 (454)
|||+.+ +.......++.+|++++|+|++.+...+....| +.+.. .++|+++|+||+|+... .+.+
T Consensus 80 tPG~~d-------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-----~~~p~iiviNK~D~~~~~~~~~~ 146 (687)
T PRK13351 80 TPGHID-------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-----YGIPRLIFINKMDRVGADLFKVL 146 (687)
T ss_pred CCCcHH-------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-----cCCCEEEEEECCCCCCCCHHHHH
Confidence 999854 223455677889999999999987666655554 33443 36899999999999864 2345
Q ss_pred HHHHHHHH
Q 012884 386 QSLTEEIL 393 (454)
Q Consensus 386 ~~l~~~l~ 393 (454)
+++++.+.
T Consensus 147 ~~i~~~l~ 154 (687)
T PRK13351 147 EDIEERFG 154 (687)
T ss_pred HHHHHHHC
Confidence 55555443
No 252
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.4e-10 Score=104.03 Aligned_cols=152 Identities=17% Similarity=0.100 Sum_probs=106.6
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc--cC---CCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 320 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I--a~---~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~ 320 (454)
+-++-++|..+.|||.||..+...+-+- +. ..|..+..++|. -..+++||||+|+.+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-----------K~vKLQIWDTAGQEr------- 70 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-----------KTVKLQIWDTAGQER------- 70 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-----------cEEEEEEeecccHHH-------
Confidence 4567789999999999999998765321 11 112222222221 124899999999943
Q ss_pred ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCC
Q 012884 321 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGC 397 (454)
Q Consensus 321 lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~---~~g~ 397 (454)
+..-...+++.+...|+|+|++..++++.+..|...++...+ .++-+|++.||-||...++..-.-+..+. ++.+
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f 148 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 148 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence 334445667889999999999999988888888877776543 36778889999999877665322233332 3567
Q ss_pred ceecccccccHHHHHHHHHh
Q 012884 398 DKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~ 417 (454)
.++++.+..+++++|-..++
T Consensus 149 lETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCAR 168 (214)
T ss_pred eeecccccccHHHHHHHHHH
Confidence 88999999999999876543
No 253
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7e-11 Score=109.22 Aligned_cols=150 Identities=22% Similarity=0.244 Sum_probs=101.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|-++|.-||||||+|..|.-.+.... -.|+..++..+++. +.+|++||.-|+. .+...+..
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~yk--------n~~f~vWDvGGq~-------k~R~lW~~ 80 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYK--------NISFTVWDVGGQE-------KLRPLWKH 80 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEc--------ceEEEEEecCCCc-------ccccchhh
Confidence 566899999999999999975543211 22344444455554 2489999999983 34555667
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCD 398 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~--~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~ 398 (454)
+...++.+|||||+++.+...+ ..++|... .+++...|+++.+||.|++.+-. ..++.+.+.- .-+.
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~e---ak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~iq 156 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEE---AKEELHRMLAEPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHIQ 156 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHH---HHHHHHHHHcCcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEEe
Confidence 7889999999999998643333 33444431 22356899999999999987633 2333333321 2345
Q ss_pred eecccccccHHHHHHHHHhhc
Q 012884 399 KVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.+....++.+.++.+...+
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred eccccccccHHHHHHHHHHHH
Confidence 678888999999998887554
No 254
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.16 E-value=9.9e-11 Score=117.66 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=78.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..|.++|.+||||||++|+|++.+... +.+..+|..+........ +.++.++||||+.+....++......
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--------G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--------GFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--------CeEEEEEECCCCCchHHHHHHHHHHH
Confidence 368899999999999999999987643 566656655543333221 34899999999987543322211111
Q ss_pred hccc--ccccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 326 LRHL--RRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 326 l~~i--~~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++ ...|++|||.+... .....|...+......|... .-+.+|||+|++|...
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~-iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD-IWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh-hhccEEEEEECCccCC
Confidence 1111 25899999965443 23334444444333334322 2367999999999764
No 255
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.14 E-value=5.2e-10 Score=111.41 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=81.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC---------CCcee-eeccceeeeCCCCCCcccccccEEEecCCCCcccccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD---------YPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 317 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~---------~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~ 317 (454)
+|.+||.+|+|||||+|+|.+....... +..|+ +......+..+. ...+++|+||||+.+....
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g------~~~~l~iiDTpGfgd~~~~ 79 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENG------VKLKLTVIDTPGFGDNINN 79 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECC------EEEEEEEEecCCccccccc
Confidence 5779999999999999999887643321 23332 233333333221 1136999999998653211
Q ss_pred CCc---c----cchh----------h--cccc--cccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 012884 318 GKG---L----GRNF----------L--RHLR--RTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 375 (454)
Q Consensus 318 ~~~---l----g~~f----------l--~~i~--~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK 375 (454)
... + ..+| . ..++ ++|+++|++|.+. .....|++.+. ++. ...|+++|+||
T Consensus 80 ~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk-~l~------~~v~vi~VinK 152 (276)
T cd01850 80 SDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMK-RLS------KRVNIIPVIAK 152 (276)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHH-HHh------ccCCEEEEEEC
Confidence 000 0 0001 0 1222 5899999999875 33344555543 344 25899999999
Q ss_pred CCCCChHH---HHHHHHHHHHhcCCc
Q 012884 376 IDLPEARD---RLQSLTEEILKIGCD 398 (454)
Q Consensus 376 ~Dl~~~~e---~~~~l~~~l~~~g~~ 398 (454)
+|+....+ ..+.+.+.+...++.
T Consensus 153 ~D~l~~~e~~~~k~~i~~~l~~~~i~ 178 (276)
T cd01850 153 ADTLTPEELKEFKQRIMEDIEEHNIK 178 (276)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCc
Confidence 99976433 233445556665544
No 256
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.12 E-value=4.1e-11 Score=106.88 Aligned_cols=148 Identities=25% Similarity=0.330 Sum_probs=95.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
++.+||.-|+|||||+|.+..... ..+-..|+-.+...++-. .-.+.+||.||+. .+...+-+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~--~edmiptvGfnmrk~tkg--------nvtiklwD~gGq~-------rfrsmWer 84 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQY--LEDMIPTVGFNMRKVTKG--------NVTIKLWDLGGQP-------RFRSMWER 84 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccc--hhhhcccccceeEEeccC--------ceEEEEEecCCCc-------cHHHHHHH
Confidence 346799999999999998864321 222233333332222211 1368999999984 35556778
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-------hcCCc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRM--YNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCD 398 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~--~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-------~~g~~ 398 (454)
+.+.+++||||||+++++..+ .-++||+. +.+.+.++|++|..||.|++++-.. ..+.+++. +..+.
T Consensus 85 ycR~v~aivY~VDaad~~k~~---~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~-~~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLE---ASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK-IALIERMGLSSITDREVCCF 160 (186)
T ss_pred HhhcCcEEEEEeecCCcccch---hhHHHHHHHhcchhhcCCcEEEecccccCcccccH-HHHHHHhCccccccceEEEE
Confidence 889999999999999865443 33455553 5677889999999999999986332 23333322 12233
Q ss_pred eecccccccHHHHHHHHH
Q 012884 399 KVTSETELSSEDAVKSLS 416 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~ 416 (454)
.++.....+++...+++.
T Consensus 161 siScke~~Nid~~~~Wli 178 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLI 178 (186)
T ss_pred EEEEcCCccHHHHHHHHH
Confidence 445556666666666554
No 257
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.11 E-value=8.6e-10 Score=99.13 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=121.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|-++|.-++|||++|..|.-.+..+ .++..|--|...+.++.+.. -...+.|.||+|+..+. . ..-
T Consensus 11 kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-----arE~l~lyDTaGlq~~~---~----eLp 78 (198)
T KOG3883|consen 11 KVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-----AREQLRLYDTAGLQGGQ---Q----ELP 78 (198)
T ss_pred EEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-----hhheEEEeecccccCch---h----hhh
Confidence 56678999999999999998665544 44444444666666655432 23579999999996651 1 222
Q ss_pred cc-cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCceecc
Q 012884 327 RH-LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKVTS 402 (454)
Q Consensus 327 ~~-i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~---~~g~~~~sa 402 (454)
+| +.-+|..++|+|..++++++.++.|..++..... ..+.|+++.+||+|+.+..+...+.+..+. +....+..+
T Consensus 79 rhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta 157 (198)
T KOG3883|consen 79 RHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTA 157 (198)
T ss_pred HhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-cccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEe
Confidence 33 3558999999999999999999999999998653 357999999999999766555444544443 345677888
Q ss_pred cccccHHHHHHHHHhhcCcccc
Q 012884 403 ETELSSEDAVKSLSTEGGEADL 424 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~~~~~ 424 (454)
.....+.+-|..+|+.+.+...
T Consensus 158 ~dR~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 158 MDRPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred ccchhhhhHHHHHHHhccCCcc
Confidence 8899999999999988866444
No 258
>PTZ00416 elongation factor 2; Provisional
Probab=99.11 E-value=3.9e-10 Score=127.81 Aligned_cols=123 Identities=19% Similarity=0.151 Sum_probs=80.9
Q ss_pred ccccccccccCCCCCHHHHHHHHHcCCCCc-cCCCcee---------------eeccceeeeCCCC--CCcccccccEEE
Q 012884 244 NIMRDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTT---------------LMPNLGRLDGDPT--LGAEKYSSEATL 305 (454)
Q Consensus 244 k~~adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT---------------~~p~~g~v~~~~~--~~~~~~~~~i~l 305 (454)
+.++.|+++|..++|||||+++|+.....+ ....++| ++.....+.+... ......+..+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 346789999999999999999998754333 1122222 2211111222100 000001236899
Q ss_pred ecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 306 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 306 iDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
+||||+.+ +.......++.+|++|+|+|+..+...+....|.. +.. .++|+|+++||||+.
T Consensus 97 iDtPG~~~-------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~-~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVD-------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQ-ALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHh-------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHH-HHH-----cCCCEEEEEEChhhh
Confidence 99999954 34456777889999999999998776666655544 442 368999999999997
No 259
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.07 E-value=4e-10 Score=127.90 Aligned_cols=123 Identities=20% Similarity=0.140 Sum_probs=81.9
Q ss_pred ccccccccccCCCCCHHHHHHHHHcCCCCcc-CCCcee---------------eeccceeeeCCCCC--------Ccccc
Q 012884 244 NIMRDDTDKGLPNAGKSTLLAAITHAKPDIA-DYPFTT---------------LMPNLGRLDGDPTL--------GAEKY 299 (454)
Q Consensus 244 k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia-~~pfTT---------------~~p~~g~v~~~~~~--------~~~~~ 299 (454)
+.++.||++|..++|||||+.+|+.....|. ...++| +......+.+.... .....
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3478999999999999999999986554331 122222 22222222221000 00001
Q ss_pred cccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 300 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 300 ~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
+..+.|+||||+.+ +.......++.+|.+|+|||+..+...+....|...+. .++|+|+++||||+.
T Consensus 97 ~~~inliDtPGh~d-------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH-------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH------CCCCEEEEEECCccc
Confidence 23689999999954 34445677888999999999998876676666655443 479999999999998
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.06 E-value=6.8e-10 Score=117.66 Aligned_cols=141 Identities=17% Similarity=0.122 Sum_probs=87.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-------------------------cC------CCceeeeccceeeeCCCCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-------------------------AD------YPFTTLMPNLGRLDGDPTLG 295 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-------------------------a~------~pfTT~~p~~g~v~~~~~~~ 295 (454)
..|+++|..++|||||+.+|+..-..+ .+ ..+.|.+.....++++
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~---- 83 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence 368999999999999999997521111 01 1244555443333322
Q ss_pred cccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC-------HhhHHHHHHHHHhcCCCCCCCC
Q 012884 296 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYLERP 368 (454)
Q Consensus 296 ~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~-------~~d~~~l~~eL~~~~~~~~~kp 368 (454)
+..+.|+||||+.+ +.......+..+|++++|||+..+.. .+..+.| ..+.. .++|
T Consensus 84 ----~~~i~lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~-----~gi~ 146 (446)
T PTZ00141 84 ----KYYFTIIDAPGHRD-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFT-----LGVK 146 (446)
T ss_pred ----CeEEEEEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHH-----cCCC
Confidence 24799999999843 44556677788999999999987642 2233333 33442 3666
Q ss_pred -EEEEEeCCCCCC---hH----HHHHHHHHHHHhcCC-------ceecccccccH
Q 012884 369 -FIVVLNKIDLPE---AR----DRLQSLTEEILKIGC-------DKVTSETELSS 408 (454)
Q Consensus 369 -~IvV~NK~Dl~~---~~----e~~~~l~~~l~~~g~-------~~~sa~~~~~~ 408 (454)
+||++||||... .+ +..+++.+.+...++ .++++....++
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni 201 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNM 201 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCc
Confidence 578999999532 12 234455555555555 24455555554
No 261
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.06 E-value=1.2e-09 Score=106.62 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=52.1
Q ss_pred ccEEEecCCCCccccccC------Ccccchhhcccc-cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 012884 301 SEATLADLPGLIEGAHLG------KGLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 373 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~------~~lg~~fl~~i~-~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~ 373 (454)
..++|+||||+...+..+ ..+......+++ ..+++|+|+|+......++...+.+++.. .+++.++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-----~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-----QGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-----cCCcEEEEE
Confidence 469999999997543211 112234566777 45699999999875555554344455553 479999999
Q ss_pred eCCCCCCh
Q 012884 374 NKIDLPEA 381 (454)
Q Consensus 374 NK~Dl~~~ 381 (454)
||+|..+.
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99999864
No 262
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.06 E-value=5.4e-10 Score=100.89 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=106.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccc--eeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~--g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
+|.++|---||||||+-+....+.. ...-+|+..-. ..+.... ....+.||||+|+.+.. .|+-.
T Consensus 15 K~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed------~ra~L~IWDTAGQErfH----ALGPI- 81 (218)
T KOG0088|consen 15 KIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVED------CRADLHIWDTAGQERFH----ALGPI- 81 (218)
T ss_pred EEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhccccccc------ceeeeeeeeccchHhhh----ccCce-
Confidence 5668899999999998877655432 11223332111 1111111 12368999999996542 23332
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-h--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-K--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-~--~g~~~~sa 402 (454)
+++.++.+++|+|+++.++++.++.|..||+..- -...-++||.||+||.+++....+-++.+. . ..+.++++
T Consensus 82 --YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml--Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSA 157 (218)
T KOG0088|consen 82 --YYRGSNGALLVYDITDRDSFQKVKNWVLELRTML--GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSA 157 (218)
T ss_pred --EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh--CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccc
Confidence 4577999999999999999999999999998653 135788999999999876554333333333 2 34678999
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.++|+.++...
T Consensus 158 k~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 158 KDNVGISELFESLTAKM 174 (218)
T ss_pred ccccCHHHHHHHHHHHH
Confidence 99999999999888655
No 263
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.05 E-value=1.7e-10 Score=112.58 Aligned_cols=125 Identities=24% Similarity=0.327 Sum_probs=69.0
Q ss_pred cEEEecCCCCccccccC-C-cccchhhcccccccEEEEEEeCCCCCCHh----hHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 012884 302 EATLADLPGLIEGAHLG-K-GLGRNFLRHLRRTRLLVHVIDAAAENPVN----DYRTVKEELRMYNPDYLERPFIVVLNK 375 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~-~-~lg~~fl~~i~~advll~ViDas~~~~~~----d~~~l~~eL~~~~~~~~~kp~IvV~NK 375 (454)
++.|+||||+|+-..-. . .+.-..+... .--+++||+|........ .+......|-. .+.|+|+|.||
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-----tklp~ivvfNK 190 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-----TKLPFIVVFNK 190 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-----ccCCeEEEEec
Confidence 59999999999842100 0 0111122221 246899999986532222 22222223332 47999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCceecccccccHHHHHHHHHhhcCcccccccccccccccccccccCCCccceeEeecC
Q 012884 376 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRPLAVVGVSVL 454 (454)
Q Consensus 376 ~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~led~~~p~~vv~~s~~ 454 (454)
+|+.+. +...++...+..+. ++++. .....+.+.+. ...-.+++|++.+.+|+|||.
T Consensus 191 ~Dv~d~-~fa~eWm~DfE~Fq-------------eAl~~-----~~~~y~s~l~~---SmSL~leeFY~~lrtv~VSs~ 247 (366)
T KOG1532|consen 191 TDVSDS-EFALEWMTDFEAFQ-------------EALNE-----AESSYMSNLTR---SMSLMLEEFYRSLRTVGVSSV 247 (366)
T ss_pred cccccc-HHHHHHHHHHHHHH-------------HHHHh-----hccchhHHhhh---hHHHHHHHHHhhCceEEEecc
Confidence 999875 55556655554321 11111 00111111111 122678899999999999984
No 264
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.05 E-value=2.2e-09 Score=99.40 Aligned_cols=150 Identities=18% Similarity=0.166 Sum_probs=99.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-------cCCCc---eeeeccceeeeCCCCCCcccccccEEEecCCCCccccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-------ADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 316 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-------a~~pf---TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~ 316 (454)
.+|.++|.-+|||||++.+++.....+ ..+-. ||.....|.+.++. +..+.|+||||+.+
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-------~~~v~LfgtPGq~R--- 80 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-------DTGVHLFGTPGQER--- 80 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-------cceEEEecCCCcHH---
Confidence 578899999999999999999765311 12334 77777777766542 24799999999944
Q ss_pred cCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--
Q 012884 317 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-- 394 (454)
Q Consensus 317 ~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-- 394 (454)
+...+--..+.++.+++++|.+.+....+.+++ +.+..- ...|++|++||.||.++.- -+.+++.+..
T Consensus 81 ----F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii-~f~~~~----~~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~~ 150 (187)
T COG2229 81 ----FKFMWEILSRGAVGAIVLVDSSRPITFHAEEII-DFLTSR----NPIPVVVAINKQDLFDALP-PEKIREALKLEL 150 (187)
T ss_pred ----HHHHHHHHhCCcceEEEEEecCCCcchHHHHHH-HHHhhc----cCCCEEEEeeccccCCCCC-HHHHHHHHHhcc
Confidence 333333445779999999999998777444443 444432 1389999999999987532 2334444432
Q ss_pred --cCCceecccccccHHHHHHHHH
Q 012884 395 --IGCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 395 --~g~~~~sa~~~~~~~e~~~~l~ 416 (454)
....+..+....+..+.+..+.
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHH
Confidence 2334445555566666655543
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.03 E-value=1e-09 Score=121.83 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=72.9
Q ss_pred ccCCCCCHHHHHHHHHcCCCCc---cCC---------------CceeeeccceeeeCCCCCCcccccccEEEecCCCCcc
Q 012884 252 KGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 313 (454)
Q Consensus 252 VG~pNaGKSTLlnaL~~~~~~I---a~~---------------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~ 313 (454)
||.+|+|||||+++|+.....+ .++ .+.|.......+.+. +..+.++||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--------~~~i~liDtPG~~~ 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--------GHKINLIDTPGHVD 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--------CEEEEEEECCCcHH
Confidence 5899999999999996543222 111 122222222233322 24799999999853
Q ss_pred ccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 314 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 314 ~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+...+...++.+|++|+|+|++.+...+....+. .+.. .++|+++|+||+|+...
T Consensus 73 -------~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~-----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 -------FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK-----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred -------HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH-----cCCCEEEEEECCCCCCC
Confidence 2334566778899999999999876665554443 3442 36899999999998754
No 266
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.02 E-value=1e-10 Score=102.74 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=106.4
Q ss_pred cccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhccc
Q 012884 251 DKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 329 (454)
Q Consensus 251 lVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i 329 (454)
++|...+|||.||-++........++..|. ++-.-..++.+.. ..++++|||+|+.+ +..-.-.++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~------kvklqiwdtagqer-------frsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDK------KVKLQIWDTAGQER-------FRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCc------EEEEEEeeccchHH-------HhhhhHhhh
Confidence 579999999999876653321112221111 1222222332211 24799999999944 333344567
Q ss_pred ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceeccccc
Q 012884 330 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSETE 405 (454)
Q Consensus 330 ~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa~~~ 405 (454)
+.+|.+++++|.....+++..+.|..+++.|.. ....+.++.||+|+..++ +.-+.+.+.+ .+.+.++++.+.
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k--~~v~l~llgnk~d~a~er~v~~ddg~kla~~y-~ipfmetsaktg 145 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAK--EAVALMLLGNKCDLAHERAVKRDDGEKLAEAY-GIPFMETSAKTG 145 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHH--hhHhHhhhccccccchhhccccchHHHHHHHH-CCCceecccccc
Confidence 889999999999999999999999999998863 357788999999997643 2233444333 256778899999
Q ss_pred ccHHHHHHHHHhhcCc
Q 012884 406 LSSEDAVKSLSTEGGE 421 (454)
Q Consensus 406 ~~~~e~~~~l~~~~~~ 421 (454)
.++.-++-.++.++.+
T Consensus 146 ~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 146 FNVDLAFLAIAEELKK 161 (192)
T ss_pred ccHhHHHHHHHHHHHH
Confidence 9999998888876644
No 267
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.02 E-value=7.9e-10 Score=123.62 Aligned_cols=119 Identities=17% Similarity=0.129 Sum_probs=77.5
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCc----------cCC------CceeeeccceeeeCCCCCCcccccccEEEecC
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDI----------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 308 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~I----------a~~------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDT 308 (454)
.+++|+++|..++|||||+++|+...-.+ .++ .++|+........... . +.+.++.|+||
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~--~--~~~~~i~liDT 93 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY--E--GNEYLINLIDT 93 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee--c--CCceEEEEEeC
Confidence 36799999999999999999997532111 111 1223332221111000 0 11247999999
Q ss_pred CCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 309 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 309 PGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
||+.+ +......+++.+|++|+|+|+..+...++...+.. +.. .+.|.++|+||+|...
T Consensus 94 PG~~~-------f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 94 PGHVD-------FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred CCccc-------cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH-----cCCCEEEEEEChhccc
Confidence 99954 33456678889999999999988655555555443 322 3678899999999874
No 268
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.01 E-value=3.6e-10 Score=100.35 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=93.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.++++.|.-||||||||..|.++.+. +.+ |.-.+...+.++.. -++.+||+-|. +++.-.+
T Consensus 18 irilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~-------f~LnvwDiGGq-------r~IRpyW 79 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGT-------FHLNVWDIGGQ-------RGIRPYW 79 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCc-------EEEEEEecCCc-------cccchhh
Confidence 36788999999999999999988763 222 11222233444321 27899999998 5566678
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GC 397 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~-l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~-------g~ 397 (454)
-.++++.|.++||||+++....+++.. +.+.++ ...+...|++|..||.|+..+ ...++++..+.-. .+
T Consensus 80 sNYyenvd~lIyVIDS~D~krfeE~~~el~ELle--eeKl~~vpvlIfankQdllta-a~~eeia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 80 SNYYENVDGLIYVIDSTDEKRFEEISEELVELLE--EEKLAEVPVLIFANKQDLLTA-AKVEEIALKLNLAGLRDRSWHI 156 (185)
T ss_pred hhhhhccceEEEEEeCCchHhHHHHHHHHHHHhh--hhhhhccceeehhhhhHHHhh-cchHHHHHhcchhhhhhceEEe
Confidence 889999999999999877543333211 111111 122467999999999999864 2234444433322 33
Q ss_pred ceecccccccHHHHHHHHH
Q 012884 398 DKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~ 416 (454)
.++++....+..+....++
T Consensus 157 q~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred eeCccccccCccCcchhhh
Confidence 4445444445555444444
No 269
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.9e-09 Score=108.88 Aligned_cols=141 Identities=20% Similarity=0.270 Sum_probs=96.7
Q ss_pred cccccCCCCCHHHHHHHHHcCCC---CccCCCceee------eccceeeeCCCCCCc-----------------------
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP---DIADYPFTTL------MPNLGRLDGDPTLGA----------------------- 296 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~---~Ia~~pfTT~------~p~~g~v~~~~~~~~----------------------- 296 (454)
|-++|....||||+|+.|+..+. .|++.|.|.. -+..+++..+....+
T Consensus 61 ill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csq 140 (532)
T KOG1954|consen 61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQ 140 (532)
T ss_pred EEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhc
Confidence 66899999999999999998753 3455554432 122222222111100
Q ss_pred --ccccccEEEecCCCCccccccCCcccchhhcc----cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 297 --EKYSSEATLADLPGLIEGAHLGKGLGRNFLRH----LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 297 --~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~----i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
.....+++|+||||+.++.++....+..|-.. +++||.|++++|+...+...+++.+...|+- .+-.+-
T Consensus 141 mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----~EdkiR 215 (532)
T KOG1954|consen 141 LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----HEDKIR 215 (532)
T ss_pred CChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----CcceeE
Confidence 01124699999999999988766666666543 5789999999999887777788877777773 345678
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHh
Q 012884 371 VVLNKIDLPEARDRLQSLTEEILK 394 (454)
Q Consensus 371 vV~NK~Dl~~~~e~~~~l~~~l~~ 394 (454)
||+||+|.++.++.+.-.-+.+..
T Consensus 216 VVLNKADqVdtqqLmRVyGALmWs 239 (532)
T KOG1954|consen 216 VVLNKADQVDTQQLMRVYGALMWS 239 (532)
T ss_pred EEeccccccCHHHHHHHHHHHHHh
Confidence 999999999986654444444443
No 270
>PRK13768 GTPase; Provisional
Probab=99.00 E-value=1.3e-09 Score=107.29 Aligned_cols=79 Identities=28% Similarity=0.374 Sum_probs=55.3
Q ss_pred ccEEEecCCCCccccccCCcccchhhccccc--ccEEEEEEeCCCCCCHhhHHHHHHH--HHhcCCCCCCCCEEEEEeCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVKEE--LRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~--advll~ViDas~~~~~~d~~~l~~e--L~~~~~~~~~kp~IvV~NK~ 376 (454)
..+.++||||+.+.... ...+..+.+++++ ++++++|+|++......++...... .... ..++|+++|+||+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~---~~~~~~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL---RLGLPQIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH---HcCCCEEEEEEhH
Confidence 36999999999876533 4556677777776 8999999999875555554433211 1111 1479999999999
Q ss_pred CCCChHH
Q 012884 377 DLPEARD 383 (454)
Q Consensus 377 Dl~~~~e 383 (454)
|+....+
T Consensus 173 D~~~~~~ 179 (253)
T PRK13768 173 DLLSEEE 179 (253)
T ss_pred hhcCchh
Confidence 9987533
No 271
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.1e-09 Score=100.48 Aligned_cols=117 Identities=26% Similarity=0.298 Sum_probs=79.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
..|-++|..++|||+|+-.|+... ..-.+|...|+.+++.+.. ....++|.||+.+ +...++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs--------~~~~LVD~PGH~r-------lR~kl~ 100 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGS--------ENVTLVDLPGHSR-------LRRKLL 100 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecC--------cceEEEeCCCcHH-------HHHHHH
Confidence 367789999999999999887542 1224567789998887642 2579999999943 444443
Q ss_pred c---ccccccEEEEEEeCCCC--CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 327 R---HLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 327 ~---~i~~advll~ViDas~~--~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
. |-.++..||||+|+..- +.-+--+.+...|..-..-....|++|++||.|+..+
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 3 33589999999998762 2222234444444332112346889999999999765
No 272
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.6e-09 Score=96.18 Aligned_cols=155 Identities=19% Similarity=0.100 Sum_probs=103.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+--+||.-++|||.||..++..+ ..++.|.|.- +.-...++.... ..+++||||+|+.+ +..-..
T Consensus 13 kyiiigdmgvgkscllhqftekk-fmadcphtigvefgtriievsgq------kiklqiwdtagqer-------fravtr 78 (215)
T KOG0097|consen 13 KYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTIGVEFGTRIIEVSGQ------KIKLQIWDTAGQER-------FRAVTR 78 (215)
T ss_pred EEEEEccccccHHHHHHHHHHHH-HhhcCCcccceecceeEEEecCc------EEEEEEeecccHHH-------HHHHHH
Confidence 44578999999999999999654 3456554421 111112222211 24789999999843 333344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
.+++.+...++|+|.+...+...+..|....+... ..+..++++.||.||...++. .++..+..++. .+.+.++.
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~lt--npnt~i~lignkadle~qrdv~yeeak~faeengl~fle~sak 156 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAK 156 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEeccc
Confidence 56777899999999999887887777766555322 235678889999999875543 34444444444 45678899
Q ss_pred ccccHHHHHHHHHhh
Q 012884 404 TELSSEDAVKSLSTE 418 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~ 418 (454)
+..+++++|-+.+..
T Consensus 157 tg~nvedafle~akk 171 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKK 171 (215)
T ss_pred ccCcHHHHHHHHHHH
Confidence 999999998765543
No 273
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.95 E-value=2.2e-09 Score=120.27 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=78.4
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCccC-CC---------------ceeeeccceeeeCCCCCCcccccccEEEecC
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDIAD-YP---------------FTTLMPNLGRLDGDPTLGAEKYSSEATLADL 308 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~-~p---------------fTT~~p~~g~v~~~~~~~~~~~~~~i~liDT 308 (454)
.++.|+++|..++|||||+.+|+.....+.. .. +.|++.....+.+.. .. .+..+.|+||
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--~~--~~~~i~liDt 94 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--EG--KEYLINLIDT 94 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe--cC--CcEEEEEEcC
Confidence 4678999999999999999999764333211 11 122222222222100 00 0236899999
Q ss_pred CCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 309 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 309 PGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
||+.+ +.....+.++.+|++|+|+|+..+...+....|..... .+.|.|+++||+|+..
T Consensus 95 PG~~d-------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~------~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 95 PGHVD-------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR------ERVKPVLFINKVDRLI 153 (731)
T ss_pred CCccC-------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH------cCCCeEEEEECchhhc
Confidence 99955 33456677888999999999988765555555544333 2578899999999863
No 274
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.94 E-value=8.3e-10 Score=100.09 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=72.1
Q ss_pred eCCceeEEEecCCc-------eeccccCc-Ccc--eeeecCCCCCCCccccchhh-----hccccccccccccccccccC
Q 012884 190 PVPLGTVVKHKRGK-------LFSDLAHP-GDE--VLVARGGRGGISLLEVPENR-----RKRMTTLTTNIMRDDTDKGL 254 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-------~~~dl~~~-g~~--~i~A~gG~Gg~~~~~~~~~~-----~~~~~~l~~k~~adVglVG~ 254 (454)
++|+.+++||.|-. ++..+.+. +.. .++|+.|.|...+.+..... ..............++++|.
T Consensus 29 ~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 108 (155)
T cd01849 29 GKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGY 108 (155)
T ss_pred CCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEcc
Confidence 57999999998751 11122222 333 27899988866544322110 00000000111346899999
Q ss_pred CCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 255 PNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 255 pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
||+|||||+|+|++.+. .+++.++||.++....+. ..+.++||||+
T Consensus 109 ~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtPG~ 155 (155)
T cd01849 109 PNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-----------NKIKLLDTPGI 155 (155)
T ss_pred CCCCHHHHHHHHHccccccccCCCCcccceEEEEec-----------CCEEEEECCCC
Confidence 99999999999999875 568899999987765432 36899999996
No 275
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.2e-09 Score=92.92 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=101.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|-.+|...|||||+|..|.-..+.. .-.|.-.++..+++. ..+|.+||.-|..+ +...+.+
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtyk--------N~kfNvwdvGGqd~-------iRplWrh 80 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYK--------NVKFNVWDVGGQDK-------IRPLWRH 80 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEee--------eeEEeeeeccCchh-------hhHHHHh
Confidence 45578999999999999997655421 112333344455553 24799999999843 4445666
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----hc--CCc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GCD 398 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~--~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-----~~--g~~ 398 (454)
++..+..++||+|+++. ++++..++||... +++....+++|.+||.|++++.. .+++++.++ .. -..
T Consensus 81 Yy~gtqglIFV~Dsa~~---dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqei~d~leLe~~r~~~W~vq 156 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADR---DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-PQEIQDKLELERIRDRNWYVQ 156 (180)
T ss_pred hccCCceEEEEEeccch---hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHHHHHHhccccccCCccEee
Confidence 67889999999999876 4555566777642 34455789999999999998632 234444332 22 235
Q ss_pred eecccccccHHHHHHHHHh
Q 012884 399 KVTSETELSSEDAVKSLST 417 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~ 417 (454)
++.+.+..+..+.+..++.
T Consensus 157 p~~a~~gdgL~eglswlsn 175 (180)
T KOG0071|consen 157 PSCALSGDGLKEGLSWLSN 175 (180)
T ss_pred ccccccchhHHHHHHHHHh
Confidence 6677788888888888764
No 276
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.4e-08 Score=107.17 Aligned_cols=159 Identities=21% Similarity=0.159 Sum_probs=111.4
Q ss_pred ccccccccccCCCCCHHHHHHHHHcCCCCcc---------------CCCceeeeccceeeeCCCCCCcccccccEEEecC
Q 012884 244 NIMRDDTDKGLPNAGKSTLLAAITHAKPDIA---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 308 (454)
Q Consensus 244 k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia---------------~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDT 308 (454)
..++++++|-.-.-|||||..+|+...-.|. -.-+.|+..+...+.+... . ...+.++||
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~---~--~ylLNLIDT 132 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDG---Q--SYLLNLIDT 132 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcC---C--ceEEEeecC
Confidence 3467889999999999999999976533221 1235566555555544321 1 136889999
Q ss_pred CCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHH
Q 012884 309 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQ 386 (454)
Q Consensus 309 PGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~ 386 (454)
||+.+ |+....+.+.-||.+|+|||++.+...+....+...++ .+..+|.|+||+|++.++ ....
T Consensus 133 PGHvD-------Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~adpe~V~~ 199 (650)
T KOG0462|consen 133 PGHVD-------FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPSADPERVEN 199 (650)
T ss_pred CCccc-------ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCCCCHHHHHH
Confidence 99954 55566777888999999999999877777766666665 478899999999998753 2233
Q ss_pred HHHHHHHhc--CCceecccccccHHHHHHHHHhhcC
Q 012884 387 SLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 387 ~l~~~l~~~--g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
++.+.+... ....+++....+.++.+..+.+...
T Consensus 200 q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 200 QLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 333333322 3445788889999998888876653
No 277
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.92 E-value=8.5e-09 Score=109.55 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceee---------------eCCCCC----------Cccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL---------------DGDPTL----------GAEK 298 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v---------------~~~~~~----------~~~~ 298 (454)
..||.+|.-..|||||+.+|++..... .-.-+-|++.-.... .+.... ....
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 368999999999999999999753311 001122221110000 000000 0001
Q ss_pred ccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 299 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 299 ~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
+...+.|+||||+. .+....+..+..+|++++|||+..+. ..+..+.+ ..+... .-+++|+|+||+|
T Consensus 115 ~~~~i~~IDtPGH~-------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l----gi~~iIVvlNKiD 182 (460)
T PTZ00327 115 LKRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM----KLKHIIILQNKID 182 (460)
T ss_pred ccceEeeeeCCCHH-------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc----CCCcEEEEEeccc
Confidence 12478999999973 34455666778899999999998742 22222222 223322 1356899999999
Q ss_pred CCChHH---HHHHHHHHHHh-----cCCceecccccccHHHHHHHHHhhc
Q 012884 378 LPEARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 378 l~~~~e---~~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.+..+ ..+++++.+.. ..+.+.++....++...++.+...+
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 986432 23444444432 2456678888999998888887543
No 278
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.1e-09 Score=100.27 Aligned_cols=154 Identities=22% Similarity=0.212 Sum_probs=105.9
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc-c----CCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI-A----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 323 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I-a----~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~ 323 (454)
|-|+|.-|||||||+-++....... . +.--+|.--+.|.+... ...+.+||.-|+ +.+..
T Consensus 20 vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--------~~~l~fwdlgGQ-------e~lrS 84 (197)
T KOG0076|consen 20 VLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--------NAPLSFWDLGGQ-------ESLRS 84 (197)
T ss_pred heeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--------cceeEEEEcCCh-------HHHHH
Confidence 4578999999999999886543211 1 12234555566666553 247999999998 45556
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--------hc
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--------KI 395 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--------~~ 395 (454)
.+..++..|+++++|||+++++..++.....+.+.. ++.+.+.|+++.+||.|+.+..+ ..++...+. ..
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~-~~El~~~~~~~e~~~~rd~ 162 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAME-AAELDGVFGLAELIPRRDN 162 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhh-HHHHHHHhhhhhhcCCccC
Confidence 677788899999999999996655544443333321 22345899999999999987643 344444333 13
Q ss_pred CCceecccccccHHHHHHHHHhhc
Q 012884 396 GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.++++-+..++.+.++++....
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHH
Confidence 466788888999999999887544
No 279
>PTZ00099 rab6; Provisional
Probab=98.89 E-value=5.9e-09 Score=96.97 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=78.8
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.++.||||||..+.. ...-.+++.+|++|+|+|+++..++++...|..++.... ....|+++|+||+||..
T Consensus 29 v~l~iwDt~G~e~~~-------~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~--~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 29 VRLQLWDTAGQERFR-------SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER--GKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEECCChHHhh-------hccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence 378999999985432 223345688999999999999877888777766665443 13688999999999964
Q ss_pred hHHH-HHHHHHHHHhc--CCceecccccccHHHHHHHHHhhcCc
Q 012884 381 ARDR-LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 381 ~~e~-~~~l~~~l~~~--g~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
.+.. .++........ .+.++++.+..++.+.++.+...+.+
T Consensus 100 ~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 100 LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2211 11222222233 35678999999999999999877643
No 280
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.89 E-value=5e-09 Score=111.09 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=85.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCcc-------------------------C------CCceeeeccceeeeCCCCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTLG 295 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia-------------------------~------~pfTT~~p~~g~v~~~~~~~ 295 (454)
..|+++|..++|||||+-+|+..--.+. + .-+.|++.....+...
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~---- 83 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT---- 83 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC----
Confidence 4689999999999999998864211110 0 1123333332222221
Q ss_pred cccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCH------hhHHHHHHHHHhcCCCCCCC-C
Q 012884 296 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLER-P 368 (454)
Q Consensus 296 ~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~------~d~~~l~~eL~~~~~~~~~k-p 368 (454)
...+.|+||||+.+ +.......+..+|++|+|||+..+..+ .+.+.....+.. .+. +
T Consensus 84 ----~~~i~liDtPGh~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~gi~~ 147 (447)
T PLN00043 84 ----KYYCTVIDAPGHRD-------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LGVKQ 147 (447)
T ss_pred ----CEEEEEEECCCHHH-------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cCCCc
Confidence 24799999999843 444556677889999999999874211 222222222332 356 4
Q ss_pred EEEEEeCCCCCCh---H----HHHHHHHHHHHhcCC-------ceecccccccH
Q 012884 369 FIVVLNKIDLPEA---R----DRLQSLTEEILKIGC-------DKVTSETELSS 408 (454)
Q Consensus 369 ~IvV~NK~Dl~~~---~----e~~~~l~~~l~~~g~-------~~~sa~~~~~~ 408 (454)
+|||+||+|+.+. + +..+++.+.+...++ .++++....++
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni 201 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM 201 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccc
Confidence 6889999998631 1 234555666666664 34555555554
No 281
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.88 E-value=8.8e-09 Score=100.12 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=74.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
||-+.|+.++||||+.+.+-..-+ .-..+-+.|.+.....+.... .-.+.+||.||+...... .+...-.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-------~~~l~iwD~pGq~~~~~~--~~~~~~~ 71 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-------FLPLNIWDCPGQDDFMEN--YFNSQRE 71 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-------SCEEEEEEE-SSCSTTHT--THTCCHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-------CcEEEEEEcCCccccccc--cccccHH
Confidence 356889999999999999986532 224455667666655554321 137999999999653211 1111222
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHH---HhcCCCCCCCCEEEEEeCCCCCChH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL---RMYNPDYLERPFIVVLNKIDLPEAR 382 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL---~~~~~~~~~kp~IvV~NK~Dl~~~~ 382 (454)
.-.++++++|||+|+...+..+++..+...+ ..++ .+..+-|.+.|+|+..+.
T Consensus 72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s---p~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS---PNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS---TT-EEEEEEE-CCCS-HH
T ss_pred HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeecccCCHH
Confidence 2347899999999999666677666555544 4455 356788999999998753
No 282
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.88 E-value=7.7e-09 Score=98.93 Aligned_cols=124 Identities=19% Similarity=0.114 Sum_probs=75.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC--CCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~--~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
+|-++|.+++||||++|.|++.+..-.. ....|..........+ +..+.++||||+.+....++.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~--------g~~v~VIDTPGl~d~~~~~~~~~~~i 73 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD--------GRQVTVIDTPGLFDSDGSDEEIIREI 73 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET--------TEEEEEEE--SSEETTEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec--------ceEEEEEeCCCCCCCcccHHHHHHHH
Confidence 3568999999999999999998753322 2223333333332222 35899999999976433322222222
Q ss_pred hc----ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 326 LR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 326 l~----~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.+ .....+++|+|++.. ..+..+...+....+.+.+.. -+-++||++.+|....
T Consensus 74 ~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 74 KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELED 131 (212)
T ss_dssp HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTT
T ss_pred HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhcccccc
Confidence 22 234579999999998 566777777766555565443 3568899999987664
No 283
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.88 E-value=1.5e-09 Score=105.86 Aligned_cols=76 Identities=29% Similarity=0.422 Sum_probs=39.3
Q ss_pred cEEEecCCCCccccccCCcccchhhccccc--ccEEEEEEeCCCCCCHhhH-HHHHHHHH-hcCCCCCCCCEEEEEeCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~--advll~ViDas~~~~~~d~-~~l~~eL~-~~~~~~~~kp~IvV~NK~D 377 (454)
.+.|+||||++|--.- ...+..+.+++.+ .-++|+++|+........+ ..+...+. ++. .+.|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence 6999999999874221 1122334444442 4578999999864433333 22111111 111 3799999999999
Q ss_pred CCCh
Q 012884 378 LPEA 381 (454)
Q Consensus 378 l~~~ 381 (454)
+...
T Consensus 168 l~~~ 171 (238)
T PF03029_consen 168 LLSK 171 (238)
T ss_dssp GS-H
T ss_pred cccc
Confidence 9974
No 284
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.86 E-value=2.1e-09 Score=99.92 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=45.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
..|+++|.||||||||+|+|++.+. .++++|+||...+...+ ..++.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-----------~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-----------DKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-----------CCCEEEEECcCC
Confidence 4789999999999999999999876 56999999997554433 137899999996
No 285
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=3.3e-09 Score=94.74 Aligned_cols=54 Identities=33% Similarity=0.375 Sum_probs=42.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 312 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii 312 (454)
.++++|.||+|||||+|+|.+.+. .+++.+++|++.....+ + ..+.|+||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T---------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C---------CCEEEEECCCcC
Confidence 567899999999999999998765 55788888887544333 1 368999999984
No 286
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=3.3e-08 Score=104.51 Aligned_cols=151 Identities=21% Similarity=0.181 Sum_probs=105.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
=|.++|.---||||||..|-+.+..-.+--+.|.+.--..+..+.. -...++|+||||+.- |...-.+
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-----~~~~itFiDTPGHeA-------Ft~mRaR 74 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-----KIPGITFIDTPGHEA-------FTAMRAR 74 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-----CCceEEEEcCCcHHH-------HHHHHhc
Confidence 3678899999999999999877655555556676544344443211 024799999999943 3222223
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC-----------
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG----------- 396 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g----------- 396 (454)
-..-||++++|||+.++.-.|..+.+. .++. .+.|++|++||+|+++.. .+.+..++.+.+
T Consensus 75 Ga~vtDIaILVVa~dDGv~pQTiEAI~-hak~-----a~vP~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 75 GASVTDIAILVVAADDGVMPQTIEAIN-HAKA-----AGVPIVVAINKIDKPEAN--PDKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred CCccccEEEEEEEccCCcchhHHHHHH-HHHH-----CCCCEEEEEecccCCCCC--HHHHHHHHHHcCCCHhhcCCceE
Confidence 345699999999999988778777764 4553 589999999999998642 233444444333
Q ss_pred CceecccccccHHHHHHHHHhh
Q 012884 397 CDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 397 ~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
+.+.++.+..++.+.+.-+.-.
T Consensus 147 ~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 147 FVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred EEEeeccCCCCHHHHHHHHHHH
Confidence 4567999999999988766533
No 287
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.84 E-value=2.3e-08 Score=104.11 Aligned_cols=160 Identities=24% Similarity=0.233 Sum_probs=113.8
Q ss_pred ccccccccccCCCCCHHHHHHHHHcCCCCc---------------cCCCceeeeccceeeeCCCCCCcccccccEEEecC
Q 012884 244 NIMRDDTDKGLPNAGKSTLLAAITHAKPDI---------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 308 (454)
Q Consensus 244 k~~adVglVG~pNaGKSTLlnaL~~~~~~I---------------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDT 308 (454)
+.+++.++|-.-.-|||||-.+|+.....+ ...-+.|+..+...+.|....+ .. ..+.++||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g-~~--Y~lnlIDT 83 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDG-ET--YVLNLIDT 83 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCC-CE--EEEEEcCC
Confidence 346777888888999999999996542222 1234667766666666542111 12 26889999
Q ss_pred CCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH
Q 012884 309 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL 388 (454)
Q Consensus 309 PGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l 388 (454)
||+.+ |....-+.+..|...|+|||++.+...+.+......++ .+.-+|-|+||+||+.++ .+..
T Consensus 84 PGHVD-------FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle------~~LeIiPViNKIDLP~Ad--perv 148 (603)
T COG0481 84 PGHVD-------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPAAD--PERV 148 (603)
T ss_pred CCccc-------eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH------cCcEEEEeeecccCCCCC--HHHH
Confidence 99965 44556677888999999999999877777766666666 467789999999999753 2333
Q ss_pred HHHHHh------cCCceecccccccHHHHHHHHHhhcCc
Q 012884 389 TEEILK------IGCDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 389 ~~~l~~------~g~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
.+++.+ .....+++.+..++++.++.+....-.
T Consensus 149 k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 149 KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 333332 244568999999999999999876643
No 288
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.84 E-value=2.9e-09 Score=96.64 Aligned_cols=108 Identities=20% Similarity=0.124 Sum_probs=66.6
Q ss_pred eCCceeEEEecCCc-------eeccccCcCc--ce-eeecCCCCCCCccccchhhhccccccccccccccccccCCCCCH
Q 012884 190 PVPLGTVVKHKRGK-------LFSDLAHPGD--EV-LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGK 259 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-------~~~dl~~~g~--~~-i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGK 259 (454)
.+|+.+|+||.|-. .+..+.+... .+ ++|.-|.|-..+.+....... ..-..+ -..|+++|.|||||
T Consensus 39 ~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~~--~~~~~~-~~~v~~~G~~nvGK 115 (157)
T cd01858 39 HKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFSK--LHSDKK-QISVGFIGYPNVGK 115 (157)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHHh--hhcccc-ceEEEEEeCCCCCh
Confidence 47999999998741 1112222111 12 677777665443332211000 000001 12578999999999
Q ss_pred HHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 260 STLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 260 STLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
|||+|+|.+.+. .++++|+||+....-.+ ...+.++||||+
T Consensus 116 StliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~liDtPGi 157 (157)
T cd01858 116 SSIINTLRSKKVCKVAPIPGETKVWQYITL-----------MKRIYLIDCPGV 157 (157)
T ss_pred HHHHHHHhcCCceeeCCCCCeeEeEEEEEc-----------CCCEEEEECcCC
Confidence 999999998776 55999999987543221 136899999996
No 289
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=2.4e-09 Score=106.60 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=71.5
Q ss_pred eCCceeEEEecCCc--e-ec----cccCcCcc--eeeecCCCCCCCccccchhh-h---cc--ccccccccccccccccC
Q 012884 190 PVPLGTVVKHKRGK--L-FS----DLAHPGDE--VLVARGGRGGISLLEVPENR-R---KR--MTTLTTNIMRDDTDKGL 254 (454)
Q Consensus 190 ~vPvgtvv~~~~~~--~-~~----dl~~~g~~--~i~A~gG~Gg~~~~~~~~~~-~---~~--~~~l~~k~~adVglVG~ 254 (454)
++|+.+|+||.|-. . .. .+.+.+.. +++|+.|.|...+.+..... . .+ ...+. ....++++||.
T Consensus 48 ~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~vG~ 126 (276)
T TIGR03596 48 NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLK-NRPIRAMIVGI 126 (276)
T ss_pred CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCC-CCCeEEEEECC
Confidence 47899999998741 0 11 12123433 27888887765543321110 0 00 00000 11246899999
Q ss_pred CCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccc
Q 012884 255 PNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 255 pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~ 314 (454)
||||||||+|+|++.+. .++++|+||+.++...+ ...+.++||||+...
T Consensus 127 ~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 127 PNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-----------SDGLELLDTPGILWP 176 (276)
T ss_pred CCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-----------CCCEEEEECCCcccC
Confidence 99999999999998764 56899999998754333 136899999999654
No 290
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.83 E-value=2.4e-09 Score=109.01 Aligned_cols=115 Identities=24% Similarity=0.228 Sum_probs=73.6
Q ss_pred eCCceeEEEecCCc-------eeccccCc-C--cceeeecCCCCCCCccccchhh--h--ccccccc-cccccccccccC
Q 012884 190 PVPLGTVVKHKRGK-------LFSDLAHP-G--DEVLVARGGRGGISLLEVPENR--R--KRMTTLT-TNIMRDDTDKGL 254 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-------~~~dl~~~-g--~~~i~A~gG~Gg~~~~~~~~~~--~--~~~~~l~-~k~~adVglVG~ 254 (454)
++|...|+||.|-. ....|.+. + ..+++++.+.++.......... + ++..... ++...+|++||.
T Consensus 61 ~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~ 140 (322)
T COG1161 61 EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGY 140 (322)
T ss_pred cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcC
Confidence 44557888887631 22223333 2 2347788888887765321111 0 0000000 011246999999
Q ss_pred CCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccc
Q 012884 255 PNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 315 (454)
Q Consensus 255 pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a 315 (454)
||||||||||+|.+.+. .++++|++|...+.-.+. ..+.|+||||++-..
T Consensus 141 PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-----------~~i~LlDtPGii~~~ 191 (322)
T COG1161 141 PNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-----------DGIYLLDTPGIIPPK 191 (322)
T ss_pred CCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-----------CCeEEecCCCcCCCC
Confidence 99999999999999877 459999999976655543 368999999998643
No 291
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.2e-09 Score=95.26 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=99.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceee--eccceeeeCCCCCC---cccccccEEEecCCCCccccccCCccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLG---AEKYSSEATLADLPGLIEGAHLGKGLG 322 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~--~p~~g~v~~~~~~~---~~~~~~~i~liDTPGii~~a~~~~~lg 322 (454)
+.-.+|..+|||||+|-+.+..+.. ..--+|. |.....+-+...-. ...+...+++|||+|+.+. +.|.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~--~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF----RSLT 84 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFN--TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF----RSLT 84 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCccc--ceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH----HHHH
Confidence 4345699999999999888765421 1111222 22222232221111 1112246899999999543 2222
Q ss_pred chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-h--cCC
Q 012884 323 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM--YNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-K--IGC 397 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~--~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-~--~g~ 397 (454)
-. ..+.+=..++++|.+...++-..+.|...|+. |. .+.-+|++.||+||.+.+...++-...+. + +.+
T Consensus 85 TA---FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc---E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPY 158 (219)
T KOG0081|consen 85 TA---FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC---ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPY 158 (219)
T ss_pred HH---HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc---CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCe
Confidence 23 34567788999999987777777777666664 33 24557889999999986655444444443 3 456
Q ss_pred ceecccccccHHHHHHHHHh
Q 012884 398 DKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~ 417 (454)
.++++.+..+++.+++-+..
T Consensus 159 fETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLD 178 (219)
T ss_pred eeeccccCcCHHHHHHHHHH
Confidence 78999999999998876553
No 292
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=3.1e-09 Score=106.37 Aligned_cols=114 Identities=20% Similarity=0.263 Sum_probs=71.9
Q ss_pred eCCceeEEEecCCc------eecc-ccCcCcc--eeeecCCCCCCCccccchhh----hcc--ccccccccccccccccC
Q 012884 190 PVPLGTVVKHKRGK------LFSD-LAHPGDE--VLVARGGRGGISLLEVPENR----RKR--MTTLTTNIMRDDTDKGL 254 (454)
Q Consensus 190 ~vPvgtvv~~~~~~------~~~d-l~~~g~~--~i~A~gG~Gg~~~~~~~~~~----~~~--~~~l~~k~~adVglVG~ 254 (454)
++|+.+|+||.|-. .+.+ +.+.+.+ .++|+.|.|...+.+..... ..+ ...+. +.-.+|++||.
T Consensus 51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~G~ 129 (287)
T PRK09563 51 NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMR-PRAIRAMIIGI 129 (287)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccC-cCceEEEEECC
Confidence 46899999998731 0111 1122333 27888887755443321110 000 00001 11236899999
Q ss_pred CCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccc
Q 012884 255 PNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 315 (454)
Q Consensus 255 pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a 315 (454)
||||||||+|+|++.+. .+++.|++|.....-.+ +.++.++||||+....
T Consensus 130 pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 130 PNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-----------GKGLELLDTPGILWPK 180 (287)
T ss_pred CCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-----------CCcEEEEECCCcCCCC
Confidence 99999999999999876 66999999998753322 2368999999997643
No 293
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.81 E-value=1.5e-08 Score=105.08 Aligned_cols=128 Identities=22% Similarity=0.282 Sum_probs=88.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc------cC----------CCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI------AD----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I------a~----------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
++.||+|-.-.-|||||+..|+.+.-.. +. .-+.|+-..-..+.+. +.+|.|+|||
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~--------~~~INIvDTP 76 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN--------GTRINIVDTP 76 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC--------CeEEEEecCC
Confidence 5788999999999999999998763211 11 1233332222233332 3489999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~~~ 387 (454)
|+ ..|+-...+.+.-.|.+|+++|+..+-..+.-..+.+.|. .+.+-|+|+||+|.+++ .+..++
T Consensus 77 GH-------ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~------~gL~PIVVvNKiDrp~Arp~~Vvd~ 143 (603)
T COG1217 77 GH-------ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA------LGLKPIVVINKIDRPDARPDEVVDE 143 (603)
T ss_pred Cc-------CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH------cCCCcEEEEeCCCCCCCCHHHHHHH
Confidence 99 4466667777788999999999998655555555666776 46778899999999875 344555
Q ss_pred HHHHHHh
Q 012884 388 LTEEILK 394 (454)
Q Consensus 388 l~~~l~~ 394 (454)
..+.+..
T Consensus 144 vfDLf~~ 150 (603)
T COG1217 144 VFDLFVE 150 (603)
T ss_pred HHHHHHH
Confidence 5555543
No 294
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.81 E-value=1.1e-08 Score=111.12 Aligned_cols=124 Identities=15% Similarity=0.080 Sum_probs=76.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCC-CceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC---Ccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADY-PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---KGL 321 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~-pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~---~~l 321 (454)
..|.++|.+||||||++|+|++.+.. +..+ +.||.. .......+ +..+.|+||||+.+..... +.+
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~id--------G~~L~VIDTPGL~dt~~dq~~neeI 189 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQ--------GVKIRVIDTPGLKSSASDQSKNEKI 189 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEEC--------CceEEEEECCCCCccccchHHHHHH
Confidence 35889999999999999999998754 3443 566653 21111111 2479999999998753211 112
Q ss_pred cchhhcccc--cccEEEEEEeCCCCCC-HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 322 GRNFLRHLR--RTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 322 g~~fl~~i~--~advll~ViDas~~~~-~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.....+.+. .+|++|+|+....... .++...+....+.+.+. .-+-+|||++.+|...
T Consensus 190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-hHcCEEEEEeCCccCC
Confidence 222222333 4799999987753222 34544544433344333 2366899999999875
No 295
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.9e-08 Score=111.27 Aligned_cols=118 Identities=23% Similarity=0.161 Sum_probs=82.3
Q ss_pred ccccccccccCCCCCHHHHHHHHHcCCCCc---cCCC---------------ceeeeccceeeeCCCCCCcccccccEEE
Q 012884 244 NIMRDDTDKGLPNAGKSTLLAAITHAKPDI---ADYP---------------FTTLMPNLGRLDGDPTLGAEKYSSEATL 305 (454)
Q Consensus 244 k~~adVglVG~pNaGKSTLlnaL~~~~~~I---a~~p---------------fTT~~p~~g~v~~~~~~~~~~~~~~i~l 305 (454)
..+++||+++.-.+|||||..+|+-..-.+ ++.. +.|+......+.+.. +..|.|
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-------~~~iNl 80 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-------DYRINL 80 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-------ceEEEE
Confidence 347899999999999999999996543322 2211 111111111222110 248999
Q ss_pred ecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 306 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 306 iDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+||||+++ +.....+.++-+|..|+|+|+..+...+....|++ +.. .+.|.++++||+|....
T Consensus 81 IDTPGHVD-------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~~-----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 81 IDTPGHVD-------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-ADK-----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred eCCCCccc-------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hhh-----cCCCeEEEEECcccccc
Confidence 99999965 45567788899999999999999876665555555 443 37999999999998865
No 296
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7.3e-08 Score=101.76 Aligned_cols=148 Identities=20% Similarity=0.168 Sum_probs=103.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+-|-+.|.-.-||||||.+|-+........-+.|.+.---.+..+. +.+++|.||||+-- |...-.
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaA-------F~aMRa 219 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAA-------FSAMRA 219 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHH-------HHHHHh
Confidence 4577889999999999999987765555666677654333344332 35899999999933 333333
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-----------
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----------- 395 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~----------- 395 (454)
+-..-+|++|+|+-+.++...+..+.+...-. .+.|+||++||||.+.+. .+....+|-..
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~------A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdV 291 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKS------ANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDV 291 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHh------cCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCce
Confidence 45566999999999999887787777654332 589999999999998652 23333333322
Q ss_pred CCceecccccccHHHHHHHHH
Q 012884 396 GCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 396 g~~~~sa~~~~~~~e~~~~l~ 416 (454)
.+.+.++.+..++....+.+.
T Consensus 292 QvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 292 QVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred eEEEeecccCCChHHHHHHHH
Confidence 345678888888776665544
No 297
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=95.12 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=110.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCC-CCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~-~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.++-+||...+|||+||-.++.. ..-..|..|-.+-....+..+ .. ...+.+|||+|+.+.. .+. -
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~-~fp~~yvPTVFdnys~~v~V~dg~------~v~L~LwDTAGqedYD----rlR--p 71 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTN-AFPEEYVPTVFDNYSANVTVDDGK------PVELGLWDTAGQEDYD----RLR--P 71 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccC-cCcccccCeEEccceEEEEecCCC------EEEEeeeecCCCcccc----ccc--c
Confidence 36678999999999999888754 223455555555444445442 11 1368899999997652 122 1
Q ss_pred hcccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----------------HHHHH
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSL 388 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----------------~~~~l 388 (454)
+ .+..+|++|++++..++.+.+.+ ..|.-|+..|. .+.|+|+|++|.||.+... ...++
T Consensus 72 l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 72 L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 1 56789999999999998887765 56777888876 5799999999999985322 22334
Q ss_pred HHHHHhcCCceecccccccHHHHHHHHHhhc
Q 012884 389 TEEILKIGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 389 ~~~l~~~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++++....+.++++.+..++.+.|+......
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 4445556678999999999888888766544
No 298
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=8.3e-09 Score=96.47 Aligned_cols=103 Identities=25% Similarity=0.195 Sum_probs=67.4
Q ss_pred eCCceeEEEecCCc---e----ecccc------CcC---cce--eeecCCCCCCCccccchhhhcccccccccccccccc
Q 012884 190 PVPLGTVVKHKRGK---L----FSDLA------HPG---DEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTD 251 (454)
Q Consensus 190 ~vPvgtvv~~~~~~---~----~~dl~------~~g---~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVgl 251 (454)
++|+.+|+||.|-. . +..+. ..+ ..+ +||+.|.|...+.+..... +. .-..+++
T Consensus 61 ~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~------l~--~~~~~~~ 132 (190)
T cd01855 61 NNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKL------AK--KGGDVYV 132 (190)
T ss_pred CCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHH------hh--cCCcEEE
Confidence 57899999998731 0 01111 111 122 7888887765433221110 00 0136789
Q ss_pred ccCCCCCHHHHHHHHHcCC---------CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 252 KGLPNAGKSTLLAAITHAK---------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 252 VG~pNaGKSTLlnaL~~~~---------~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
+|.||||||||+|+|.+.. ..++..|+||+++....+. ..+.|+||||+
T Consensus 133 ~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~~~DtPG~ 190 (190)
T cd01855 133 VGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-----------NGKKLYDTPGI 190 (190)
T ss_pred EcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-----------CCCEEEeCcCC
Confidence 9999999999999998743 3458899999998766653 25799999996
No 299
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.70 E-value=1.1e-08 Score=94.31 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=104.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
..++-+||--++||||+|.+....- ...+|--|- .+.....+.... -...+.+|||+|+.+. ...
T Consensus 20 aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~------Edvr~mlWdtagqeEf-------DaI 85 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLI------EDVRSMLWDTAGQEEF-------DAI 85 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhH------HHHHHHHHHhccchhH-------HHH
Confidence 3467789999999999999998431 112221110 010111111110 0236789999999553 333
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH----HHHHHHHHHHhcCCcee
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKV 400 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e----~~~~l~~~l~~~g~~~~ 400 (454)
...+++.+.+.|+|+..++..+++....|.+.++.- ..++|.++|-||+||++... ..+.++..+. ..+..+
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e---~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-~RlyRt 161 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE---TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-KRLYRT 161 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH---hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-hhhhhh
Confidence 456778899999999999988888888887777642 35799999999999987532 2333333332 356677
Q ss_pred cccccccHHHHHHHHHhhcC
Q 012884 401 TSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~~ 420 (454)
++....++...|.++++...
T Consensus 162 Svked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 162 SVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhhHHHHHHHHHHHH
Confidence 88888899898888887664
No 300
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=7.6e-09 Score=94.26 Aligned_cols=116 Identities=26% Similarity=0.324 Sum_probs=79.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.++-+.|.-|||||||++.|...+-.. --.|++|....+.+-. -+++.+|.-|+... .+-+.
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~q---hvPTlHPTSE~l~Ig~--------m~ftt~DLGGH~qA-------rr~wk 82 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELSIGG--------MTFTTFDLGGHLQA-------RRVWK 82 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccc---cCCCcCCChHHheecC--------ceEEEEccccHHHH-------HHHHH
Confidence 567789999999999999998665322 1236666666555432 37999999998432 23456
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++-.||.+|++||+-+.+..++.+.-.+.+ .-.+.+...|++|..||+|.+.+
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~l-l~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDAL-LSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHH-HhHHHHhcCcceeecccccCCCc
Confidence 6778899999999998754433332211111 11223458999999999999875
No 301
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1e-07 Score=98.21 Aligned_cols=126 Identities=23% Similarity=0.249 Sum_probs=76.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-----------------c--------------CCCceeeeccceeeeCCCCCCc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-----------------A--------------DYPFTTLMPNLGRLDGDPTLGA 296 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-----------------a--------------~~pfTT~~p~~g~v~~~~~~~~ 296 (454)
.+.++|..++|||||+-+|+-.--.| + -+-+-|.+.....++.+
T Consensus 9 nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~----- 83 (428)
T COG5256 9 NLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD----- 83 (428)
T ss_pred EEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-----
Confidence 56789999999999999985321111 0 02233443333333322
Q ss_pred ccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC------CHhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 297 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 297 ~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~------~~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
...|+|+|+||++ .+-...+.-+.+||+.|+|||+..++ ...+.+.-.. |..+ +.-.-+|
T Consensus 84 ---k~~~tIiDaPGHr-------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~t---lGi~~lI 149 (428)
T COG5256 84 ---KYNFTIIDAPGHR-------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LART---LGIKQLI 149 (428)
T ss_pred ---CceEEEeeCCchH-------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHh---cCCceEE
Confidence 1369999999973 34445556668899999999998863 1112221111 2221 1235688
Q ss_pred EEEeCCCCCCh-HHHHHHHHHHH
Q 012884 371 VVLNKIDLPEA-RDRLQSLTEEI 392 (454)
Q Consensus 371 vV~NK~Dl~~~-~e~~~~l~~~l 392 (454)
|++||||+++. +++++++.+.+
T Consensus 150 VavNKMD~v~wde~rf~ei~~~v 172 (428)
T COG5256 150 VAVNKMDLVSWDEERFEEIVSEV 172 (428)
T ss_pred EEEEcccccccCHHHHHHHHHHH
Confidence 99999999863 44566665443
No 302
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.66 E-value=2.9e-08 Score=102.49 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=94.8
Q ss_pred eCCceeEEEecCCc-------eec----c-ccCcC----cce-eeecCCCCCCCccccchhhhccccccccccccccccc
Q 012884 190 PVPLGTVVKHKRGK-------LFS----D-LAHPG----DEV-LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 252 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-------~~~----d-l~~~g----~~~-i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglV 252 (454)
..|+.+|+||.|-. .+. + +.+.| +.+ +||+-|.|...+.+...... + -.+|.+|
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~--------~-~~~v~~v 160 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKAR--------N-KKDVYVV 160 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh--------C-CCeEEEE
Confidence 46899999997631 001 1 11233 122 68888776544332221100 0 1478999
Q ss_pred cCCCCCHHHHHHHHHcCCC------CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 253 GLPNAGKSTLLAAITHAKP------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 253 G~pNaGKSTLlnaL~~~~~------~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
|.||||||||+|+|++... .++++|+||++.+...+. ..+.++||||+........-+...-+
T Consensus 161 G~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-----------~~~~l~DtPG~~~~~~~~~~l~~~~l 229 (360)
T TIGR03597 161 GVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-----------DGHSLYDTPGIINSHQMAHYLDKKDL 229 (360)
T ss_pred CCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-----------CCCEEEECCCCCChhHhhhhcCHHHH
Confidence 9999999999999998642 458999999987654431 25789999999864322222222222
Q ss_pred ccc---ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 327 RHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 327 ~~i---~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+.+ ++.....+.+|.........+..+ +.+. . ....+.+.++|.+....
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~-d~~~----~-~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLARF-DYLK----G-EKTSFTFYVSNELNIHR 281 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEEE-EEec----C-CceEEEEEccCCceeEe
Confidence 222 345667777776543222221111 0111 1 23556777888776653
No 303
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.65 E-value=1.5e-07 Score=96.06 Aligned_cols=99 Identities=9% Similarity=0.115 Sum_probs=62.6
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++|+||+|+..... ..+..||++++|++...++ +++.+.... .+..-++|+||||+..
T Consensus 149 ~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd---~iq~~k~gi-------~E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 149 YDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGD---ELQGIKKGI-------MELADLIVINKADGDN 208 (332)
T ss_pred CCEEEEECCCCccchh----------HHHHhCCEEEEEecCCchH---HHHHHHhhh-------hhhhheEEeehhcccc
Confidence 4799999999964321 1355699999998754443 333322211 1334489999999886
Q ss_pred hH---HHHHHHHHHHHhc---------CCceecccccccHHHHHHHHHhhc
Q 012884 381 AR---DRLQSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~~---e~~~~l~~~l~~~---------g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.. ....++.+.+.-. .+..+++....++.+.+..+....
T Consensus 209 ~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 209 KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 42 2334444444321 234578888999999888887654
No 304
>PRK12289 GTPase RsgA; Reviewed
Probab=98.64 E-value=2e-08 Score=103.37 Aligned_cols=101 Identities=21% Similarity=0.165 Sum_probs=65.6
Q ss_pred eCCceeEEEecCCc-------eeccccCcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCCCHH
Q 012884 190 PVPLGTVVKHKRGK-------LFSDLAHPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGKS 260 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-------~~~dl~~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGKS 260 (454)
.+|+.+|+||.|-. +...+...|-.+ +||..|.|...+.+.. .-+ -++++|.||||||
T Consensus 120 ~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L----------~~k---i~v~iG~SgVGKS 186 (352)
T PRK12289 120 GLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQL----------RNK---ITVVAGPSGVGKS 186 (352)
T ss_pred CCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhh----------ccc---eEEEEeCCCCCHH
Confidence 47899999998741 112233345333 7899887754433211 111 1578999999999
Q ss_pred HHHHHHHcCCC-CccCCCc-------eeeeccceeeeCCCCCCcccccccEEEecCCCCccc
Q 012884 261 TLLAAITHAKP-DIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 261 TLlnaL~~~~~-~Ia~~pf-------TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~ 314 (454)
||||+|.+... .+++.+. ||.+..+-.+. ....|+||||+.+.
T Consensus 187 SLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-----------~g~~liDTPG~~~~ 237 (352)
T PRK12289 187 SLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-----------NGGLLADTPGFNQP 237 (352)
T ss_pred HHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-----------CCcEEEeCCCcccc
Confidence 99999997654 4466776 77766444332 13489999999653
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.63 E-value=5.4e-08 Score=100.38 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=62.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC---CccC--CCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP---DIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 321 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~---~Ia~--~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l 321 (454)
.+||++|-+|+|||||||+|-+-.. ..++ ..-||.++..-.... -..+++||+||+-.....
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~---------~pnv~lWDlPG~gt~~f~---- 102 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK---------FPNVTLWDLPGIGTPNFP---- 102 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS----------TTEEEEEE--GGGSS------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC---------CCCCeEEeCCCCCCCCCC----
Confidence 3799999999999999999966321 1122 223555443332211 137999999999432111
Q ss_pred cchhhc--ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 322 GRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 322 g~~fl~--~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
...++. .+.+.|++|+|.+. .....+...+. +++. .++|+.+|-+|+|.
T Consensus 103 ~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~-~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 PEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAK-EIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHH-HHHH-----TT-EEEEEE--HHH
T ss_pred HHHHHHHccccccCEEEEEeCC--CCchhhHHHHH-HHHH-----cCCcEEEEEecccc
Confidence 112333 35678987776664 35567777664 4554 48999999999995
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.56 E-value=9.7e-08 Score=96.19 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=62.1
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++|+||||.... ....++.+|.++++.+...+ ++++.+...+ .++|.++|+||+|+..
T Consensus 127 ~D~viidT~G~~~~----------e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-------~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 127 YDVIIVETVGVGQS----------EVDIANMADTFVVVTIPGTG---DDLQGIKAGL-------MEIADIYVVNKADGEG 186 (300)
T ss_pred CCEEEEeCCCCchh----------hhHHHHhhceEEEEecCCcc---HHHHHHHHHH-------hhhccEEEEEcccccc
Confidence 47999999997422 22345668999888665432 3444333323 3788999999999986
Q ss_pred hHHHH---HHHHHHH----Hh---c--CCceecccccccHHHHHHHHHhhc
Q 012884 381 ARDRL---QSLTEEI----LK---I--GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~~e~~---~~l~~~l----~~---~--g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+.. ..+...+ .+ + .+..+++.+..++.+.+..+....
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 53211 1111111 11 1 245688889999999988887653
No 307
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.55 E-value=6.1e-07 Score=103.12 Aligned_cols=111 Identities=23% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC---c----ccc---cccEEEecCCCCccccccCCcccchhh
Q 012884 257 AGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---A----EKY---SSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 257 aGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~---~----~~~---~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
++|||||.+|.+.+..-...-+.|.+.--..+..+.... . ..+ ...++||||||+... .....
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-------~~lr~ 544 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-------TSLRK 544 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-------HHHHH
Confidence 349999999998765444445556543333333221000 0 000 125899999997432 11122
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
+.+..+|++++|+|++++...+..+.+. .+.. .++|+++|+||+|+..
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~-~lk~-----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIEAIN-ILRQ-----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHHHHH-HHHH-----cCCCEEEEEECCCCcc
Confidence 3456699999999999865556555543 3443 3689999999999963
No 308
>PRK12288 GTPase RsgA; Reviewed
Probab=98.55 E-value=5e-08 Score=100.30 Aligned_cols=101 Identities=22% Similarity=0.145 Sum_probs=63.2
Q ss_pred eCCceeEEEecCCce----------eccccCcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCC
Q 012884 190 PVPLGTVVKHKRGKL----------FSDLAHPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNA 257 (454)
Q Consensus 190 ~vPvgtvv~~~~~~~----------~~dl~~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNa 257 (454)
.+|+.+|+||.|-.- ...+...|-++ ++|+.|.|...+.+.. .-+ -++|+|.|||
T Consensus 150 ~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L----------~~k---i~~~vG~sgV 216 (347)
T PRK12288 150 GIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAAL----------TGR---ISIFVGQSGV 216 (347)
T ss_pred CCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHH----------hhC---CEEEECCCCC
Confidence 478899999987421 11122345343 6888887654332211 101 1578999999
Q ss_pred CHHHHHHHHHcCCC-CccCCC-------ceeeeccceeeeCCCCCCcccccccEEEecCCCCccc
Q 012884 258 GKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 258 GKSTLlnaL~~~~~-~Ia~~p-------fTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~ 314 (454)
|||||||+|++... .+++.+ .||....+-.+.. ...|+||||+.+-
T Consensus 217 GKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-----------~~~liDTPGir~~ 270 (347)
T PRK12288 217 GKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-----------GGDLIDSPGVREF 270 (347)
T ss_pred CHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-----------CCEEEECCCCCcc
Confidence 99999999997654 334444 3666555444421 3469999999764
No 309
>PRK13796 GTPase YqeH; Provisional
Probab=98.53 E-value=5e-08 Score=101.00 Aligned_cols=105 Identities=32% Similarity=0.308 Sum_probs=66.8
Q ss_pred eCCceeEEEecCCc-----------eeccc-cCcC----cce-eeecCCCCCCCccccchhhhccccccccccccccccc
Q 012884 190 PVPLGTVVKHKRGK-----------LFSDL-AHPG----DEV-LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 252 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-----------~~~dl-~~~g----~~~-i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglV 252 (454)
+.|+.+|+||.|-. ++.++ ...| +.+ ++|+-|.|...+.+...... . -.++.+|
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~------~---~~~v~vv 166 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYR------E---GRDVYVV 166 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc------C---CCeEEEE
Confidence 46889999997641 01111 1223 222 78888776554332221100 0 1368899
Q ss_pred cCCCCCHHHHHHHHHcCC----C--CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccc
Q 012884 253 GLPNAGKSTLLAAITHAK----P--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 253 G~pNaGKSTLlnaL~~~~----~--~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~ 314 (454)
|.||||||||||+|.+.. . .++++|+||++.....+. ....++||||++..
T Consensus 167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-----------~~~~l~DTPGi~~~ 223 (365)
T PRK13796 167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-----------DGSFLYDTPGIIHR 223 (365)
T ss_pred cCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-----------CCcEEEECCCcccc
Confidence 999999999999998542 2 348899999986554432 24689999999754
No 310
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.51 E-value=2.8e-07 Score=80.63 Aligned_cols=139 Identities=17% Similarity=0.128 Sum_probs=92.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.++++||..++||+||.++|-+....-- .|. .+++. .=-.+||||..-. ++.+-+..+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQ-----Ave~~----------d~~~IDTPGEy~~---~~~~Y~aL~ 59 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQ-----AVEFN----------DKGDIDTPGEYFE---HPRWYHALI 59 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc----ccc-----eeecc----------CccccCCchhhhh---hhHHHHHHH
Confidence 3678999999999999999988653210 111 12221 1135899997432 233333455
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Cceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~sa~ 403 (454)
.....+|++++|-.+.++.+.-.-. .+. ...+|+|-|++|+||.+. +..+..+.+|...| +..+++.
T Consensus 60 tt~~dadvi~~v~~and~~s~f~p~----f~~-----~~~k~vIgvVTK~DLaed-~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 60 TTLQDADVIIYVHAANDPESRFPPG----FLD-----IGVKKVIGVVTKADLAED-ADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred HHhhccceeeeeecccCccccCCcc----ccc-----ccccceEEEEecccccch-HhHHHHHHHHHHcCCcceEEEecc
Confidence 5668899999999998753221111 111 235779999999999963 44566666776665 5667888
Q ss_pred ccccHHHHHHHHHh
Q 012884 404 TELSSEDAVKSLST 417 (454)
Q Consensus 404 ~~~~~~e~~~~l~~ 417 (454)
.+.++++.+.++.+
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999998874
No 311
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=1e-07 Score=86.15 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=64.8
Q ss_pred eCCceeEEEecCCc---eec---ccc-CcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCCCHH
Q 012884 190 PVPLGTVVKHKRGK---LFS---DLA-HPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGKS 260 (454)
Q Consensus 190 ~vPvgtvv~~~~~~---~~~---dl~-~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGKS 260 (454)
.+|+.+++||.|-. ... ++. ..+.++ +||+.|.|...+.+....... .. .....+.++|.||+|||
T Consensus 41 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~----~~-~~~~~~~~ig~~~~Gks 115 (156)
T cd01859 41 GKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAK----ID-GKEGKVGVVGYPNVGKS 115 (156)
T ss_pred CCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHh----hc-CCCcEEEEECCCCCCHH
Confidence 46999999998731 111 111 123333 788888775443322111100 00 11246789999999999
Q ss_pred HHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 261 TLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 261 TLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
||+|+|.+... .+++.+++|.+...... +..+.+|||||+
T Consensus 116 sl~~~l~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~DtpGi 156 (156)
T cd01859 116 SIINALKGRHSASTSPSPGYTKGEQLVKI-----------TSKIYLLDTPGV 156 (156)
T ss_pred HHHHHHhCCCccccCCCCCeeeeeEEEEc-----------CCCEEEEECcCC
Confidence 99999997654 44777888865432222 136899999996
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5.2e-07 Score=93.41 Aligned_cols=126 Identities=24% Similarity=0.230 Sum_probs=83.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc---------cCCCceeeec-------------cceeeeCCCCCCcccccccEE
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI---------ADYPFTTLMP-------------NLGRLDGDPTLGAEKYSSEAT 304 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I---------a~~pfTT~~p-------------~~g~v~~~~~~~~~~~~~~i~ 304 (454)
+..|||-.|.||||||...|+=---.| ..--++|-|. -+-.++|. +..+.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~--------~~~iN 84 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA--------DCLVN 84 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--------CeEEe
Confidence 356889999999999999884221111 1111222211 11112222 24689
Q ss_pred EecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--H
Q 012884 305 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--R 382 (454)
Q Consensus 305 liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~ 382 (454)
|+||||+ +.+...+.+.+.-+|..|+|||+..+.-.+..+ |.+..+ +.+.|++-.+||+|.... -
T Consensus 85 LLDTPGH-------eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr-----lR~iPI~TFiNKlDR~~rdP~ 151 (528)
T COG4108 85 LLDTPGH-------EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR-----LRDIPIFTFINKLDREGRDPL 151 (528)
T ss_pred ccCCCCc-------cccchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh-----hcCCceEEEeeccccccCChH
Confidence 9999999 446667888888899999999999886555544 334444 368999999999998743 3
Q ss_pred HHHHHHHHHHH
Q 012884 383 DRLQSLTEEIL 393 (454)
Q Consensus 383 e~~~~l~~~l~ 393 (454)
|.++++.+.|.
T Consensus 152 ELLdEiE~~L~ 162 (528)
T COG4108 152 ELLDEIEEELG 162 (528)
T ss_pred HHHHHHHHHhC
Confidence 55666665553
No 313
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.48 E-value=6.8e-08 Score=94.65 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=61.8
Q ss_pred eCCceeEEEecCCc--------eeccccCcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCCCH
Q 012884 190 PVPLGTVVKHKRGK--------LFSDLAHPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGK 259 (454)
Q Consensus 190 ~vPvgtvv~~~~~~--------~~~dl~~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGK 259 (454)
++|+.++.||.|-. ....+.+.|-.+ ++|+-|.|...+.+. +.- .-++++|.|||||
T Consensus 67 ~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~----------l~~---~~~~~~G~sgvGK 133 (245)
T TIGR00157 67 NIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEA----------LQN---RISVFAGQSGVGK 133 (245)
T ss_pred CCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhh----------hcC---CEEEEECCCCCCH
Confidence 46889999998731 112222344333 788887664332211 110 1357899999999
Q ss_pred HHHHHHHHcCCC-CccCC-------CceeeeccceeeeCCCCCCcccccccEEEecCCCCccc
Q 012884 260 STLLAAITHAKP-DIADY-------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 260 STLlnaL~~~~~-~Ia~~-------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~ 314 (454)
|||||+|.+... .+++. ..||++...-.+ . ...|+||||+.+.
T Consensus 134 StLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~----------~~~liDtPG~~~~ 184 (245)
T TIGR00157 134 SSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H----------GGLIADTPGFNEF 184 (245)
T ss_pred HHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C----------CcEEEeCCCcccc
Confidence 999999997643 22332 347776554433 1 3489999999764
No 314
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.42 E-value=7.4e-07 Score=94.96 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=93.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC--CccC-CCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP--DIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~--~Ia~-~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
+|.+||-.|+||||||-+|+.++- .|-+ .|-.|+. .+..+ . .....|+||.--.+. ...
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-----advtP----e--~vpt~ivD~ss~~~~-------~~~ 72 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-----ADVTP----E--NVPTSIVDTSSDSDD-------RLC 72 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-----CccCc----C--cCceEEEecccccch-------hHH
Confidence 578899999999999999987642 2211 1222221 11111 0 124789999733211 123
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-----HHHHHHHHHHhc-CC
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI-GC 397 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~-l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-----~~~~l~~~l~~~-g~ 397 (454)
....++++|++.+|++.+++.+.+-+.. |.-.++..--...+.|+|+|.||+|...... ....++..+.+. -+
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtc 152 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETC 152 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHH
Confidence 4567899999999999988766665543 3333332222236899999999999876421 244555555554 34
Q ss_pred ceecccccccHHHHHHHH
Q 012884 398 DKVTSETELSSEDAVKSL 415 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l 415 (454)
.++++..-....+.+...
T Consensus 153 iecSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 153 IECSALTLANVSELFYYA 170 (625)
T ss_pred HhhhhhhhhhhHhhhhhh
Confidence 566777777777777543
No 315
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=5.1e-07 Score=97.04 Aligned_cols=119 Identities=25% Similarity=0.288 Sum_probs=82.7
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCC-Cc-----cC--CCceee---------eccceeeeCCCCCCcccccccEEEec
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKP-DI-----AD--YPFTTL---------MPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~-~I-----a~--~pfTT~---------~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
.++.||++|.-..|||+|+..|..+.- .. .+ |+-|+. ..+..++-..... .-..-+.++|
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~---~KS~l~nilD 203 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSK---GKSYLMNILD 203 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCc---Cceeeeeeec
Confidence 467899999999999999999976521 11 21 222221 1111111111110 0123588999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
|||+.. +.......++-+|++|+|||+..+...+..+++...++ ...|+++|+||+|..
T Consensus 204 TPGHVn-------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVN-------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRL 262 (971)
T ss_pred CCCccc-------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHH
Confidence 999954 44556778888999999999999988888888888777 589999999999964
No 316
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.41 E-value=2.8e-07 Score=84.93 Aligned_cols=110 Identities=22% Similarity=0.253 Sum_probs=68.2
Q ss_pred eCCceeEEEecCCc---eec---ccc-CcCcc--eeeecCCCCCCCccccchhh-----hccccccccccccccccccCC
Q 012884 190 PVPLGTVVKHKRGK---LFS---DLA-HPGDE--VLVARGGRGGISLLEVPENR-----RKRMTTLTTNIMRDDTDKGLP 255 (454)
Q Consensus 190 ~vPvgtvv~~~~~~---~~~---dl~-~~g~~--~i~A~gG~Gg~~~~~~~~~~-----~~~~~~l~~k~~adVglVG~p 255 (454)
.+|+.+++||.|-. ... +.+ ..+.. .++|+.|.|...+.+..... ..+..... ....++.++|.|
T Consensus 46 ~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~G~~ 124 (171)
T cd01856 46 NKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLL-PRGIRAMVVGIP 124 (171)
T ss_pred CCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccC-CCCeEEEEECCC
Confidence 46899999998741 011 111 12232 27888887755433221110 00000011 112368899999
Q ss_pred CCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCC
Q 012884 256 NAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 311 (454)
Q Consensus 256 NaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGi 311 (454)
|+|||||+|+|.+.+. .+++.++||.+...-.+. ..+.++||||+
T Consensus 125 ~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-----------~~~~~iDtpG~ 170 (171)
T cd01856 125 NVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-----------PGIYLLDTPGI 170 (171)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-----------CCEEEEECCCC
Confidence 9999999999998765 558889999876554332 26899999997
No 317
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.5e-06 Score=92.70 Aligned_cols=81 Identities=28% Similarity=0.397 Sum_probs=54.8
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC------CHhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERPFIVVLN 374 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~------~~~d~~~l~~eL~~~~~~~~~kp~IvV~N 374 (454)
..++|+|+||+ +.|....+.-+-.+|+.++|||++.+. +-.+.+.....|+.+. -.-+||++|
T Consensus 255 ~~~tliDaPGh-------kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg----i~qlivaiN 323 (603)
T KOG0458|consen 255 KIVTLIDAPGH-------KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG----ISQLIVAIN 323 (603)
T ss_pred eeEEEecCCCc-------cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC----cceEEEEee
Confidence 47999999997 334445666677899999999998742 2223333334444322 356889999
Q ss_pred CCCCCCh-HHHHHHHHHHH
Q 012884 375 KIDLPEA-RDRLQSLTEEI 392 (454)
Q Consensus 375 K~Dl~~~-~e~~~~l~~~l 392 (454)
|+|+++. +++++++...+
T Consensus 324 KmD~V~Wsq~RF~eIk~~l 342 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKL 342 (603)
T ss_pred cccccCccHHHHHHHHHHH
Confidence 9999974 45667666544
No 318
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.39 E-value=1.6e-07 Score=98.63 Aligned_cols=58 Identities=28% Similarity=0.280 Sum_probs=48.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 315 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a 315 (454)
.-||+||+|||||||+||+|.+.+. .++..|+.|.+.+.-.++ ..+.|.|+||++-..
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-----------~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-----------PSVCLCDCPGLVFPS 373 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-----------CCceecCCCCccccC
Confidence 4689999999999999999999876 679999999866544442 478999999998644
No 319
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.2e-06 Score=88.77 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=53.1
Q ss_pred cccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCC-CCEEEEEeCCCC
Q 012884 300 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDL 378 (454)
Q Consensus 300 ~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~-kp~IvV~NK~Dl 378 (454)
.++|+++||||+.+ +.+....-...||+.|++||+..+...+..+-- .... +.+ +-+++++|||||
T Consensus 85 KRkFIiADTPGHeQ-------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs-~I~s-----LLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGHEQ-------YTRNMATGASTADLAILLVDARKGVLEQTRRHS-FIAS-----LLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcHHH-------HhhhhhcccccccEEEEEEecchhhHHHhHHHH-HHHH-----HhCCcEEEEEEeeecc
Confidence 36899999999943 344444455679999999999876544443321 2222 234 557788999999
Q ss_pred CCh-HHHHHHHHHHH
Q 012884 379 PEA-RDRLQSLTEEI 392 (454)
Q Consensus 379 ~~~-~e~~~~l~~~l 392 (454)
++- ++.++++.+.+
T Consensus 152 vdy~e~~F~~I~~dy 166 (431)
T COG2895 152 VDYSEEVFEAIVADY 166 (431)
T ss_pred cccCHHHHHHHHHHH
Confidence 974 45566666544
No 320
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.37 E-value=8.1e-07 Score=87.40 Aligned_cols=116 Identities=22% Similarity=0.167 Sum_probs=74.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC----
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK---- 319 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~---- 319 (454)
+++++.|..|+|||||||.+...+... ...++-|...+.-.+ +..+.++|.||+-. |..+-
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-----------~~~~~~vDlPG~~~-a~y~~~~~~ 204 (320)
T KOG2486|consen 137 PELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-----------GKSWYEVDLPGYGR-AGYGFELPA 204 (320)
T ss_pred ceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-----------cceEEEEecCCccc-ccCCccCcc
Confidence 577899999999999999998775422 224555553332222 35899999999532 11111
Q ss_pred c---ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 320 G---LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 320 ~---lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
. +...++-.=+.---+++++|++.+....|...+ +++.+ .+.|+.+|+||||...
T Consensus 205 d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i-~~~ge-----~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 205 DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEI-AWLGE-----NNVPMTSVFTKCDKQK 262 (320)
T ss_pred hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHH-HHHhh-----cCCCeEEeeehhhhhh
Confidence 1 111222111233345778899987766666654 45553 4799999999999754
No 321
>PRK00098 GTPase RsgA; Reviewed
Probab=98.37 E-value=2.5e-07 Score=93.20 Aligned_cols=100 Identities=26% Similarity=0.243 Sum_probs=62.1
Q ss_pred eCCceeEEEecCCc--------eeccccCcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCCCH
Q 012884 190 PVPLGTVVKHKRGK--------LFSDLAHPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGK 259 (454)
Q Consensus 190 ~vPvgtvv~~~~~~--------~~~dl~~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGK 259 (454)
++|+.+++||.|-. ....+.+.|-++ ++|+.|.|...+.+. +.- .-++++|.+||||
T Consensus 111 ~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~----------l~g---k~~~~~G~sgvGK 177 (298)
T PRK00098 111 GIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPL----------LAG---KVTVLAGQSGVGK 177 (298)
T ss_pred CCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhh----------ccC---ceEEEECCCCCCH
Confidence 47899999998741 111122344443 788887664332211 111 1368999999999
Q ss_pred HHHHHHHHcCCC-CccCCC-------ceeeeccceeeeCCCCCCcccccccEEEecCCCCcc
Q 012884 260 STLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 313 (454)
Q Consensus 260 STLlnaL~~~~~-~Ia~~p-------fTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~ 313 (454)
|||+|+|.+... ..++.+ .||.......+. ....|+||||+.+
T Consensus 178 Stlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-----------~~~~~~DtpG~~~ 228 (298)
T PRK00098 178 STLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-----------GGGLLIDTPGFSS 228 (298)
T ss_pred HHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-----------CCcEEEECCCcCc
Confidence 999999998654 234433 366655444332 2458999999964
No 322
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3.9e-06 Score=84.10 Aligned_cols=166 Identities=17% Similarity=0.157 Sum_probs=100.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCC---------CCc---cCCCceeeeccceeee---CCCCC------CcccccccEEE
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAK---------PDI---ADYPFTTLMPNLGRLD---GDPTL------GAEKYSSEATL 305 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~---------~~I---a~~pfTT~~p~~g~v~---~~~~~------~~~~~~~~i~l 305 (454)
..||+||.-.-|||||..+|++.. +.| -.|+-+++........ +.... ....+.+.+.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 478999999999999999998752 212 1233333211111110 00000 01123367999
Q ss_pred ecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH
Q 012884 306 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL 385 (454)
Q Consensus 306 iDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~ 385 (454)
+|.||+ +-|-...|.-..-.|..|+||.++.+-+..+-+.-...|+... -+-+|||-||+||+..++.+
T Consensus 91 VDaPGH-------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig----ik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 91 VDAPGH-------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG----IKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred eeCCch-------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc----cceEEEEecccceecHHHHH
Confidence 999998 2233334444455799999999998544433332223344321 36789999999999865444
Q ss_pred HH---HHHHHH-----hcCCceecccccccHHHHHHHHHhhcCccc
Q 012884 386 QS---LTEEIL-----KIGCDKVTSETELSSEDAVKSLSTEGGEAD 423 (454)
Q Consensus 386 ~~---l~~~l~-----~~g~~~~sa~~~~~~~e~~~~l~~~~~~~~ 423 (454)
+. +.++++ ...+.+.++....++...++.+........
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 43 334433 235667888888899988888876664433
No 323
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1e-05 Score=81.81 Aligned_cols=120 Identities=23% Similarity=0.242 Sum_probs=75.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC--c-----cCCCceeeeccceeeeCCCCCC-cccccccEEEecCCCCccccccCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD--I-----ADYPFTTLMPNLGRLDGDPTLG-AEKYSSEATLADLPGLIEGAHLGK 319 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~--I-----a~~pfTT~~p~~g~v~~~~~~~-~~~~~~~i~liDTPGii~~a~~~~ 319 (454)
++|++|.-.+|||||..+|+.-... . +-.-+.|+|--...+....-.. +..-.-+++++|.||+ .
T Consensus 9 N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH-------a 81 (522)
T KOG0461|consen 9 NLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH-------A 81 (522)
T ss_pred eeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc-------H
Confidence 6799999999999999999653211 1 1123445554443333221000 0000137899999998 4
Q ss_pred cccchhhcccccccEEEEEEeCCCCCCHhhHHHH-HHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 320 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 320 ~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l-~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+|.+..+....--|+.++|||+..+...+..+.| .-++ ..+..|||+||+|+..+
T Consensus 82 sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPE 137 (522)
T ss_pred HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccc
Confidence 4555566666668999999999886544443332 2222 25778999999998765
No 324
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.26 E-value=4.3e-06 Score=80.90 Aligned_cols=92 Identities=16% Similarity=-0.065 Sum_probs=58.9
Q ss_pred ccccccccCCCCCHHHHHHHHHcC--CCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA--KPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 322 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~--~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg 322 (454)
+.-|+++|.+++|||||||.|.+. ...+ .....||............. -...++++||||+....... ...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~-----~~~~v~~lDteG~~~~~~~~-~~~ 80 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLG-----KEHAVLLLDTEGTDGRERGE-FED 80 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCC-----CcceEEEEecCCcCccccCc-hhh
Confidence 345789999999999999999998 4455 34567776544443332110 02479999999997643221 011
Q ss_pred chhhcccc--cccEEEEEEeCCC
Q 012884 323 RNFLRHLR--RTRLLVHVIDAAA 343 (454)
Q Consensus 323 ~~fl~~i~--~advll~ViDas~ 343 (454)
...+-++. -++++||.++...
T Consensus 81 ~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 81 DARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred hhHHHHHHHHHhCEEEEeccCcc
Confidence 11222233 4899999999865
No 325
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.26 E-value=4.2e-06 Score=79.58 Aligned_cols=153 Identities=13% Similarity=0.101 Sum_probs=83.8
Q ss_pred cccccccccCCCCCHHHHHHHHHcC-C--CC--c-cCCCceeeeccc------eeeeCCCCC-------------C-ccc
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHA-K--PD--I-ADYPFTTLMPNL------GRLDGDPTL-------------G-AEK 298 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~-~--~~--I-a~~pfTT~~p~~------g~v~~~~~~-------------~-~~~ 298 (454)
-+.-|+++|++|+|||||++.+... . .. + ....+.+.|... .++.....- . ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3567899999999999999999765 1 11 1 111111221110 001100000 0 000
Q ss_pred ccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 299 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 299 ~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
....++|++|.|..... . .+ . ...+.-+.|+|+...+... . .... ...+|.++|+||+|+
T Consensus 101 ~~~d~IiIEt~G~l~~~---~----~~-~--~~~~~~i~Vvd~~~~d~~~----~-~~~~-----~~~~a~iiv~NK~Dl 160 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---A----DF-D--LGEHMRVVLLSVTEGDDKP----L-KYPG-----MFKEADLIVINKADL 160 (207)
T ss_pred CCCCEEEEecCCCcCCC---c----cc-c--cccCeEEEEEecCcccchh----h-hhHh-----HHhhCCEEEEEHHHc
Confidence 02368999999932111 0 11 1 1234556789987643211 1 1111 135788999999999
Q ss_pred CChH-HHHHHHHHHHHh----cCCceecccccccHHHHHHHHHh
Q 012884 379 PEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 379 ~~~~-e~~~~l~~~l~~----~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
.+.. ...+++.+.+.+ ..+..+++.+..++.+.++.+..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 161 AEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred cccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 7532 223344444443 34667888999999999988764
No 326
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.25 E-value=9.3e-07 Score=86.69 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=63.7
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++|+.|-|. |+.-..-..-||.+++|+-...++..|-++.=.-|+ +=|+|+||+|+..+
T Consensus 123 D~IiiETVGv----------GQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vVNKaD~~gA 182 (266)
T PF03308_consen 123 DVIIIETVGV----------GQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVVNKADRPGA 182 (266)
T ss_dssp SEEEEEEESS----------STHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEEE--SHHHH
T ss_pred CEEEEeCCCC----------CccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEEeCCChHHH
Confidence 5777777765 333344456699999999998887777665433333 33999999998777
Q ss_pred HHHHHHHHHHHHhc-----CC----ceecccccccHHHHHHHHHhhc
Q 012884 382 RDRLQSLTEEILKI-----GC----DKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 382 ~e~~~~l~~~l~~~-----g~----~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+....+++..+.-. +| ..+++....++.+.++.+.+..
T Consensus 183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66667777666532 22 2356677888888887766433
No 327
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.25 E-value=1.7e-06 Score=79.16 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=42.9
Q ss_pred ccEEEecCCCCccccccCCc-ccchhhcccccccEEEEEEeCCCCCC-HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKG-LGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~-lg~~fl~~i~~advll~ViDas~~~~-~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
.+++++||||+.+....-.. +....+....+.|.+++|+|+..... ......+...+.. .=+||+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEecccC
Confidence 47899999999765432221 11234456677999999999865211 1112333344442 23789999996
No 328
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=9.8e-06 Score=84.30 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=105.5
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCcc---CCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIA---DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia---~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
|+..|.---|||||+.++++....+. ..-++|.|......+.. +..+.|+|.||+- .+-+..
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--------d~~~~fIDvpgh~-------~~i~~m 67 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--------DGVMGFIDVPGHP-------DFISNL 67 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--------CCceEEeeCCCcH-------HHHHHH
Confidence 45668888899999999998765552 24578887655544432 2378999999994 345566
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHH------HHhcCCce
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE------ILKIGCDK 399 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~------l~~~g~~~ 399 (454)
+..+.-.|..++|||+.++...+..+.+ ..|+.+. -+-.+||+||+|+.+.. +.++..++ +....+..
T Consensus 68 iag~~~~d~alLvV~~deGl~~qtgEhL-~iLdllg----i~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 68 LAGLGGIDYALLVVAADEGLMAQTGEHL-LILDLLG----IKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred HhhhcCCceEEEEEeCccCcchhhHHHH-HHHHhcC----CCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccc
Confidence 7777789999999999887766666654 3455432 34459999999999753 22322222 23445677
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++++.-.++....
T Consensus 142 ~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 142 TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccCCCHHHHHHHHHHhh
Confidence 88889999999888876544
No 329
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.23 E-value=2.1e-06 Score=85.96 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=72.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC--CCc--------eeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD--YPF--------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 317 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~--~pf--------TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~ 317 (454)
.|-+||.+|+|||||||.|.+....... ++. +++......+..+ .....+.|+||||+-+.-..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------~~~l~LtiiDTpGfGd~i~n 79 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEEN------GVKLNLTIIDTPGFGDNIDN 79 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEET------CEEEEEEEEEEC-CSSSSTH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccC------CcceEEEEEeCCCccccccc
Confidence 3458999999999999999986432221 111 1112111122111 12247999999998542111
Q ss_pred CCc-------ccchhhcc-----------c--ccccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 012884 318 GKG-------LGRNFLRH-----------L--RRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 318 ~~~-------lg~~fl~~-----------i--~~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~ 376 (454)
... +..+|-.+ + .|.|++||+|+.+. +....|++.+. .|. ...++|-|+.|+
T Consensus 80 ~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk-~Ls------~~vNvIPvIaKa 152 (281)
T PF00735_consen 80 SDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMK-RLS------KRVNVIPVIAKA 152 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHH-HHT------TTSEEEEEESTG
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHH-Hhc------ccccEEeEEecc
Confidence 000 01111111 1 35899999999875 45567777653 455 357889999999
Q ss_pred CCCChHHH---HHHHHHHHHhcCCc
Q 012884 377 DLPEARDR---LQSLTEEILKIGCD 398 (454)
Q Consensus 377 Dl~~~~e~---~~~l~~~l~~~g~~ 398 (454)
|.....|. .+.+.+.+...++.
T Consensus 153 D~lt~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 153 DTLTPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHTT--
T ss_pred cccCHHHHHHHHHHHHHHHHHcCce
Confidence 99886443 23344455555543
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.17 E-value=1e-06 Score=88.28 Aligned_cols=100 Identities=26% Similarity=0.174 Sum_probs=60.2
Q ss_pred eCCceeEEEecCCc------eecc-ccCcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCCCHH
Q 012884 190 PVPLGTVVKHKRGK------LFSD-LAHPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGKS 260 (454)
Q Consensus 190 ~vPvgtvv~~~~~~------~~~d-l~~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGKS 260 (454)
++|+.+++||.|-. .... ..+.|-++ ++|+.|.|...+... +.- ..++++|.+|||||
T Consensus 109 ~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~----------L~~---k~~~~~G~sg~GKS 175 (287)
T cd01854 109 GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREY----------LKG---KTSVLVGQSGVGKS 175 (287)
T ss_pred CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhh----------hcc---ceEEEECCCCCCHH
Confidence 57899999998741 0111 22345443 788888765332211 110 24689999999999
Q ss_pred HHHHHHHcCCCC-ccC-------CCceeeeccceeeeCCCCCCcccccccEEEecCCCCcc
Q 012884 261 TLLAAITHAKPD-IAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 313 (454)
Q Consensus 261 TLlnaL~~~~~~-Ia~-------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~ 313 (454)
||+|+|++.... .+. -..||.....-.+. ....++||||+.+
T Consensus 176 Tlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-----------~~~~liDtPG~~~ 225 (287)
T cd01854 176 TLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-----------GGGLLIDTPGFRE 225 (287)
T ss_pred HHHHHHhchhhccccceeccCCCCCcccceEEEEEcC-----------CCCEEEECCCCCc
Confidence 999999986432 122 22355544332221 1357999999965
No 331
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.4e-06 Score=88.82 Aligned_cols=134 Identities=20% Similarity=0.181 Sum_probs=80.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceee--------eccceeeeCCC-------------------C--C---
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL--------MPNLGRLDGDP-------------------T--L--- 294 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~--------~p~~g~v~~~~-------------------~--~--- 294 (454)
-+|++.|..|+||||++|+++..+.--++.-.||- +-..++.-.+. . .
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 47899999999999999999877643333333331 00001100000 0 0
Q ss_pred ----------CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCC
Q 012884 295 ----------GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY 364 (454)
Q Consensus 295 ----------~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~ 364 (454)
......+.+.++|.||+.-++ .+....-.+...+|++|||+.+..-.+..+...+...-+
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~s----e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~------ 259 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS----ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE------ 259 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCch----hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc------
Confidence 000112469999999996542 334455678889999999999987555555444443332
Q ss_pred CCCCE-EEEEeCCCCCChH-HHHHHHHHH
Q 012884 365 LERPF-IVVLNKIDLPEAR-DRLQSLTEE 391 (454)
Q Consensus 365 ~~kp~-IvV~NK~Dl~~~~-e~~~~l~~~ 391 (454)
+||- .|+.||||...++ +..+.+.++
T Consensus 260 -~KpniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 260 -EKPNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred -cCCcEEEEechhhhhcccHHHHHHHHHH
Confidence 3564 5678899987653 334444444
No 332
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.16 E-value=2e-06 Score=88.27 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=49.8
Q ss_pred cccccccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc
Q 012884 243 TNIMRDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 316 (454)
Q Consensus 243 ~k~~adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~ 316 (454)
++....||+||+||+||||+||+|...+. .+++.|+-|..-....+ +..+.|+|.||++-...
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-----------dk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-----------DKKIRLLDSPGIVPPSI 312 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-----------cCCceeccCCceeecCC
Confidence 34556899999999999999999998887 45889988875443332 35799999999986543
No 333
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.14 E-value=9.5e-07 Score=90.34 Aligned_cols=58 Identities=26% Similarity=0.288 Sum_probs=47.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 315 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a 315 (454)
+-||+||+||+||||+||.|-..+. .+++.|+.|.-.+..++. ++|.|||+||+.-..
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm-----------krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM-----------KRIFLIDCPGVVYPS 366 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH-----------hceeEecCCCccCCC
Confidence 4699999999999999999998887 569999998754444332 479999999998654
No 334
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=7.2e-06 Score=81.37 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=84.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCC-----------CccC-----CCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKP-----------DIAD-----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~-----------~Ia~-----~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
-.+||-+|.-+-|||||..+|+..-. .|.+ .-+.|+.+....++.. .+.+..+|+|
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~--------~rhyahVDcP 83 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA--------NRHYAHVDCP 83 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC--------CceEEeccCC
Confidence 45789999999999999999975311 1111 1244554433333322 3579999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCChHHHHHH-
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEARDRLQS- 387 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~-IvV~NK~Dl~~~~e~~~~- 387 (454)
|+.+ +.+..+....+.|..++|+.++++-..+..+-++- .++ .+.|. ++++||+|+.+..+.++.
T Consensus 84 GHaD-------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl-arq-----vGvp~ivvflnK~Dmvdd~ellelV 150 (394)
T COG0050 84 GHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILL-ARQ-----VGVPYIVVFLNKVDMVDDEELLELV 150 (394)
T ss_pred ChHH-------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh-hhh-----cCCcEEEEEEecccccCcHHHHHHH
Confidence 9943 33345555677899999999998644444433321 121 36664 557999999987665543
Q ss_pred ---HHHHHHhcCCc
Q 012884 388 ---LTEEILKIGCD 398 (454)
Q Consensus 388 ---l~~~l~~~g~~ 398 (454)
+++.|...++.
T Consensus 151 emEvreLLs~y~f~ 164 (394)
T COG0050 151 EMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHcCCC
Confidence 44566666665
No 335
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.10 E-value=7.2e-07 Score=82.92 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=105.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCce-eeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfT-T~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
-++-++|.-+|||++++.+-......- .|--| -.+..+.++..++. -..+++|||++|+. .++...
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~-~yRAtIgvdfalkVl~wdd~-----t~vRlqLwdIagQe-------rfg~mt 92 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSY-HYRATIGVDFALKVLQWDDK-----TIVRLQLWDIAGQE-------RFGNMT 92 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHH-HHHHHHhHHHHHHHhccChH-----HHHHHHHhcchhhh-------hhcceE
Confidence 355689999999999998876543211 01000 01222333333221 01368899999994 456555
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCChH-----HHHHHHHHHHHhcCCc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEAR-----DRLQSLTEEILKIGCD 398 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~--~~~~~~kp~IvV~NK~Dl~~~~-----e~~~~l~~~l~~~g~~ 398 (454)
.-+++.+.+.++|+|++...+++....|.+++..- -+.-.-.|+|+..||||+.... ..++.+..+-.-.+|.
T Consensus 93 rVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwt 172 (229)
T KOG4423|consen 93 RVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWT 172 (229)
T ss_pred EEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcccee
Confidence 56778899999999999988888888888887632 1222347889999999987542 1222222222335788
Q ss_pred eecccccccHHHHHHHHHhhc
Q 012884 399 KVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++++....++.++...+....
T Consensus 173 ets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 173 ETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred eeccccccChhHHHHHHHHHH
Confidence 999999999998888776544
No 336
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=5.6e-06 Score=74.19 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=89.0
Q ss_pred ccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhccc
Q 012884 250 TDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 329 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i 329 (454)
-+.|.-++||+|++-++.--+.. ...| |...+...+.+. +-++++||.-|.- .+.-.+..++
T Consensus 22 lilgldGaGkttIlyrlqvgevv-ttkP--tigfnve~v~yK--------NLk~~vwdLggqt-------SirPyWRcYy 83 (182)
T KOG0072|consen 22 LILGLDGAGKTTILYRLQVGEVV-TTKP--TIGFNVETVPYK--------NLKFQVWDLGGQT-------SIRPYWRCYY 83 (182)
T ss_pred EEeeccCCCeeEEEEEcccCccc-ccCC--CCCcCccccccc--------cccceeeEccCcc-------cccHHHHHHh
Confidence 35688889999887766422210 1111 112223333332 2379999999873 3445677788
Q ss_pred ccccEEEEEEeCCCCCCHh----hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHHH-HHHHh--cCCce
Q 012884 330 RRTRLLVHVIDAAAENPVN----DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLT-EEILK--IGCDK 399 (454)
Q Consensus 330 ~~advll~ViDas~~~~~~----d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~---e~~~~l~-~~l~~--~g~~~ 399 (454)
+.+|.++||||.++.+... ++..+.+| +++..-.+++++||+|..... |.+..+. ..+++ +.+..
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E-----~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~ 158 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQE-----EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVK 158 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhcc-----HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEe
Confidence 9999999999999854322 22222222 223456788899999987643 2222221 22332 35677
Q ss_pred ecccccccHHHHHHHHHhh
Q 012884 400 VTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~ 418 (454)
.++....++.++..++..-
T Consensus 159 tSA~kg~Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRP 177 (182)
T ss_pred eccccccCCcHHHHHHHHH
Confidence 8888899999999888643
No 337
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=3.2e-05 Score=84.45 Aligned_cols=119 Identities=24% Similarity=0.180 Sum_probs=77.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCC-------CCccc--c-cccEEEecCCCCcccccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT-------LGAEK--Y-SSEATLADLPGLIEGAHL 317 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~-------~~~~~--~-~~~i~liDTPGii~~a~~ 317 (454)
-++++|.-..|||-||..|.+.+..-+.+.+.|...--..+..... ..... + -..+.+|||||+...+.+
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 3688999999999999999887655566666665322111111100 00000 1 135899999998543221
Q ss_pred CCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 318 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 318 ~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
--+-..-||++|+|+|+..+.-.+.++.+. .|+. .+.|+||++||+|..
T Consensus 557 -------RsrgsslC~~aIlvvdImhGlepqtiESi~-lLR~-----rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 557 -------RSRGSSLCDLAILVVDIMHGLEPQTIESIN-LLRM-----RKTPFIVALNKIDRL 605 (1064)
T ss_pred -------hhccccccceEEEEeehhccCCcchhHHHH-HHHh-----cCCCeEEeehhhhhh
Confidence 112234599999999999876666666653 3553 479999999999975
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.06 E-value=9.3e-06 Score=80.97 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=59.5
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++|+.|-|. |+.=..-..-+|.+++|.=...++..|-++.=. .+..=|+|+||+|+..+
T Consensus 145 DvIIVETVGv----------GQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~Gi----------mEiaDi~vINKaD~~~A 204 (323)
T COG1703 145 DVIIVETVGV----------GQSEVDIANMADTFLVVMIPGAGDDLQGIKAGI----------MEIADIIVINKADRKGA 204 (323)
T ss_pred CEEEEEecCC----------CcchhHHhhhcceEEEEecCCCCcHHHHHHhhh----------hhhhheeeEeccChhhH
Confidence 4677777665 333333445589999998887776555544322 23445999999998777
Q ss_pred HHHHHHHHHHHHh-------cCCc----eecccccccHHHHHHHHH
Q 012884 382 RDRLQSLTEEILK-------IGCD----KVTSETELSSEDAVKSLS 416 (454)
Q Consensus 382 ~e~~~~l~~~l~~-------~g~~----~~sa~~~~~~~e~~~~l~ 416 (454)
+....++...+.. .+|. .+++....++.+.++.+-
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~ 250 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIE 250 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHH
Confidence 5555555544432 2443 356666778777766554
No 339
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=6e-06 Score=87.56 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=84.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
-|++||.|++||||||.+|... |.-.|++.+.|.++..... .++++++.+|--+ +++..
T Consensus 71 IvavvGPpGtGKsTLirSlVrr------~tk~ti~~i~GPiTvvsgK-----~RRiTflEcp~Dl----------~~miD 129 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRR------FTKQTIDEIRGPITVVSGK-----TRRITFLECPSDL----------HQMID 129 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHH------HHHhhhhccCCceEEeecc-----eeEEEEEeChHHH----------HHHHh
Confidence 3789999999999999999753 2233555555655543221 2589999998431 24555
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCChHHHHHHHHHHHHh
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEARDRLQSLTEEILK 394 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~-IvV~NK~Dl~~~~e~~~~l~~~l~~ 394 (454)
..+-+|++|++||+.-+...+.++.|.-.+. .+.|. +.|++..|+......+......+..
T Consensus 130 vaKIaDLVlLlIdgnfGfEMETmEFLnil~~------HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh 191 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGFEMETMEFLNILIS------HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH 191 (1077)
T ss_pred HHHhhheeEEEeccccCceehHHHHHHHHhh------cCCCceEEEEeecccccChHHHHHHHHHHhh
Confidence 5667999999999999887888877754333 35664 4599999999876666766665554
No 340
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.99 E-value=5.3e-05 Score=72.02 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=58.2
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.+++++|.|+.- ...+...+ +|.+|.|+|+...+..... . ..+ ....=++|+||+|+.+.
T Consensus 93 D~iiIEt~G~~l--------~~~~~~~l--~~~~i~vvD~~~~~~~~~~--~---~~q-----i~~ad~~~~~k~d~~~~ 152 (199)
T TIGR00101 93 EMVFIESGGDNL--------SATFSPEL--ADLTIFVIDVAAGDKIPRK--G---GPG-----ITRSDLLVINKIDLAPM 152 (199)
T ss_pred CEEEEECCCCCc--------ccccchhh--hCcEEEEEEcchhhhhhhh--h---HhH-----hhhccEEEEEhhhcccc
Confidence 577888888421 11111222 5779999999875432210 0 011 12344899999999852
Q ss_pred -HHHHHHHHHHHHh----cCCceecccccccHHHHHHHHHh
Q 012884 382 -RDRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 382 -~e~~~~l~~~l~~----~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
....+.+.+.+.. ..+.++++.+..++++.++++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 153 VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 1223333334433 45678899999999999988863
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.95 E-value=2.6e-05 Score=69.56 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=47.9
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC 397 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~ 397 (454)
.+++++++||++++|+|+..+....+. .+.+.+.... .++|+++|+||+|+.... ...++.+.+...+.
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~~---~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~ 72 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEVD---PRKKNILLLNKADLLTEE-QRKAWAEYFKKEGI 72 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhcc---CCCcEEEEEechhcCCHH-HHHHHHHHHHhcCC
Confidence 577899999999999999887654443 3334444321 368999999999997643 34455566665543
No 342
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=1.6e-05 Score=85.18 Aligned_cols=150 Identities=21% Similarity=0.196 Sum_probs=95.0
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCC---CccCCC--cee-------------eeccceeeeCCCCCCcccccccEEEe
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKP---DIADYP--FTT-------------LMPNLGRLDGDPTLGAEKYSSEATLA 306 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~---~Ia~~p--fTT-------------~~p~~g~v~~~~~~~~~~~~~~i~li 306 (454)
-++.||++-.--+|||||.++++--.- .+.+.- .+| +..--..+.+ ...++.|+
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w--------~~~~iNiI 109 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW--------RDYRINII 109 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee--------ccceeEEe
Confidence 467899999999999999998864322 121111 222 1111111111 13489999
Q ss_pred cCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH
Q 012884 307 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ 386 (454)
Q Consensus 307 DTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~ 386 (454)
||||+++. .....++++..|..|+|+|+..+...+....| ..+..| ++|.|+.+||+|...+. ...
T Consensus 110 DTPGHvDF-------T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry-----~vP~i~FiNKmDRmGa~-~~~ 175 (721)
T KOG0465|consen 110 DTPGHVDF-------TFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY-----NVPRICFINKMDRMGAS-PFR 175 (721)
T ss_pred cCCCceeE-------EEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc-----CCCeEEEEehhhhcCCC-hHH
Confidence 99999764 44566788889999999999987655555444 456665 69999999999998753 233
Q ss_pred HHHHHHHhcCCceecccccccHHHHHHHHH
Q 012884 387 SLTEEILKIGCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 387 ~l~~~l~~~g~~~~sa~~~~~~~e~~~~l~ 416 (454)
.+.....++.........+.+.++.+..+.
T Consensus 176 ~l~~i~~kl~~~~a~vqiPig~e~~f~Gvv 205 (721)
T KOG0465|consen 176 TLNQIRTKLNHKPAVVQIPIGSESNFKGVV 205 (721)
T ss_pred HHHHHHhhcCCchheeEccccccccchhHH
Confidence 444444444444444444555555444444
No 343
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.91 E-value=2.9e-06 Score=84.97 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCCCEEEEEeCCCCCCh-HHHHHHHHHHHHhc----CCceecccccccHHHHHHHHHh
Q 012884 365 LERPFIVVLNKIDLPEA-RDRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 365 ~~kp~IvV~NK~Dl~~~-~e~~~~l~~~l~~~----g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
...+-++|+||+|+... ...++.+.+.+..+ .+..+++.+..+.+++..++..
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999863 22344555555443 4667788899999998888753
No 344
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.86 E-value=0.00012 Score=74.85 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=79.3
Q ss_pred cccccCCCCCHHHHHHHHHcCCC----CccCCCc----eeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP----DIADYPF----TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 320 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~----~Ia~~pf----TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~ 320 (454)
|-++|..|.|||||+|.|.+..- .+.+... .|+.......... ...+...++++||||+.+.-.....
T Consensus 26 im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~----e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 26 IMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELE----EDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred EEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeee----cCCeEEEEEEeccCCcccccccccc
Confidence 45799999999999999987621 1111111 2222111111111 1123347999999999764321110
Q ss_pred -------ccchh----------hcc--c--ccccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 321 -------LGRNF----------LRH--L--RRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 321 -------lg~~f----------l~~--i--~~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
+..++ .+. + .|.+++||.|-.+. +....|++.+.. |. ...-+|=|+-|+|.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~-ls------~~vNlIPVI~KaD~ 174 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKR-LS------KRVNLIPVIAKADT 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHH-Hh------cccCeeeeeecccc
Confidence 01111 111 1 35799999999765 555677777654 43 24667889999999
Q ss_pred CChHHH---HHHHHHHHHhcCCc
Q 012884 379 PEARDR---LQSLTEEILKIGCD 398 (454)
Q Consensus 379 ~~~~e~---~~~l~~~l~~~g~~ 398 (454)
...+|. .+.+++.+....+.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~ 197 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIP 197 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCc
Confidence 886543 23344555555544
No 345
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.83 E-value=8.2e-05 Score=67.08 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=56.5
Q ss_pred hhccccc-ccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCceec
Q 012884 325 FLRHLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVT 401 (454)
Q Consensus 325 fl~~i~~-advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~s 401 (454)
.++|+.+ +|++|+|+|++.+...++.. +...+.. .++|+++|+||+|+.+..+ .+.+....... .+..++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~-l~~~~~~-----~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRK-LERYVLE-----LGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHH-HHHHHHh-----CCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEEEE
Confidence 4566654 99999999998765444432 2233331 3689999999999975432 23332222222 345678
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++++.++.+...+
T Consensus 78 a~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 78 AKERLGTKILRRTIKELA 95 (156)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 888888988888776543
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.82 E-value=8.7e-06 Score=74.93 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=33.3
Q ss_pred cccccCCCCCHHHHHHHHHcCCC-C---ccCC----CceeeeccceeeeCCCCCCcccccccEEEecCCCCccc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP-D---IADY----PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~-~---Ia~~----pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~ 314 (454)
+.|+|.+|||||||+|+|..... . |+.. -.||....+-.+. ....|+||||+.+-
T Consensus 38 ~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-----------~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 38 SVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-----------DGGYIIDTPGFRSF 100 (161)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-----------TSEEEECSHHHHT-
T ss_pred EEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-----------CCcEEEECCCCCcc
Confidence 57899999999999999998732 2 2222 2455543333331 25789999999653
No 347
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=1.4e-05 Score=82.29 Aligned_cols=126 Identities=23% Similarity=0.220 Sum_probs=83.0
Q ss_pred ccccccccCCCCCHHHHHHHHHc---CCCCccCC---------------CceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITH---AKPDIADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~---~~~~Ia~~---------------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
++.||++-.-.|||||...+|+- +-...++. -+.|+...-..++ |-+.++.++|
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd--------wkg~rinlid 108 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD--------WKGHRINLID 108 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc--------cccceEeeec
Confidence 56889999999999999888743 21111111 1222222212222 2246899999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHH
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRL 385 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~ 385 (454)
|||+.+ +.....+.++--|.+|.|+|++.+...+.+..|++ ..+ .+.|.++.+||||...+. ...
T Consensus 109 tpghvd-------f~leverclrvldgavav~dasagve~qtltvwrq-adk-----~~ip~~~finkmdk~~anfe~av 175 (753)
T KOG0464|consen 109 TPGHVD-------FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-ADK-----FKIPAHCFINKMDKLAANFENAV 175 (753)
T ss_pred CCCcce-------EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-ccc-----cCCchhhhhhhhhhhhhhhhhHH
Confidence 999965 34455667777899999999999877777666655 332 479999999999987642 224
Q ss_pred HHHHHHH
Q 012884 386 QSLTEEI 392 (454)
Q Consensus 386 ~~l~~~l 392 (454)
+.+.+.+
T Consensus 176 dsi~ekl 182 (753)
T KOG0464|consen 176 DSIEEKL 182 (753)
T ss_pred HHHHHHh
Confidence 4444443
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.78 E-value=0.0001 Score=66.81 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=54.7
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC-C--ceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG-C--DKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g-~--~~~s 401 (454)
.++.++.+|++++|+|++.+....+ ..+.+.+... ..++|.++|+||+|+.+.++ .+.+.+.+.+.. + ...+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iS 76 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE---KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHAS 76 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccC-HHHHHHHHhc---cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEee
Confidence 3567889999999999988643332 3333444432 13589999999999986533 444444444321 1 2345
Q ss_pred ccccccHHHHHHHHH
Q 012884 402 SETELSSEDAVKSLS 416 (454)
Q Consensus 402 a~~~~~~~e~~~~l~ 416 (454)
+....+..+..+.+.
T Consensus 77 a~~~~~~~~L~~~l~ 91 (157)
T cd01858 77 INNPFGKGSLIQLLR 91 (157)
T ss_pred ccccccHHHHHHHHH
Confidence 566677776666654
No 349
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.74 E-value=7.9e-05 Score=67.69 Aligned_cols=156 Identities=14% Similarity=0.072 Sum_probs=93.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.+..|||||+-...+.... ..|..|+ +.-....+.... ....|.|||.-|..+. ....
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~d-e~~~q~~GvN~mdkt~~i~~------t~IsfSIwdlgG~~~~-------~n~l 86 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYD-EEYTQTLGVNFMDKTVSIRG------TDISFSIWDLGGQREF-------INML 86 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhH-HHHHHHhCccceeeEEEecc------eEEEEEEEecCCcHhh-------hccC
Confidence 47899999999999999877665432 1111111 111111222111 0236899999998542 1122
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--hHHHHHHHH---HHHH-h--cCC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARDRLQSLT---EEIL-K--IGC 397 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~--~~e~~~~l~---~~l~-~--~g~ 397 (454)
--+...+-+++|++|.+.+.+...+..|....+.++ ....| |+|.+|-|+.- ..+..+.+. ..+. . ..+
T Consensus 87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N--ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL 163 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN--KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASL 163 (205)
T ss_pred ceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC--Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcE
Confidence 223467889999999999988888888877777554 22344 56899998632 112222222 2222 2 345
Q ss_pred ceecccccccHHHHHHHHHhhc
Q 012884 398 DKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+++....++...|+.+.+.+
T Consensus 164 ~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 164 FFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred EEeeccccccHHHHHHHHHHHH
Confidence 6677777888888887765443
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.73 E-value=0.0002 Score=70.31 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=62.9
Q ss_pred cccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--ceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~--~~~sa~ 403 (454)
..++++|.+++|+|+.++. +.+.+..|...++. .+.|.++|+||+||.+..+..+++.+.+...++ ..+++.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAk 106 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSK 106 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3578899999999999765 56666666555542 479999999999997654443345556666654 567888
Q ss_pred ccccHHHHHHHHHh
Q 012884 404 TELSSEDAVKSLST 417 (454)
Q Consensus 404 ~~~~~~e~~~~l~~ 417 (454)
+..++.+.++.+..
T Consensus 107 tg~gi~eLf~~l~~ 120 (245)
T TIGR00157 107 NQDGLKELIEALQN 120 (245)
T ss_pred CchhHHHHHhhhcC
Confidence 88899998887653
No 351
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.72 E-value=3.3e-05 Score=74.45 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=77.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|-+.|++|+||||+=..+-.....- ...++.|+|...+.+.+-. .--+.+||.-|+.+.-. ..+..+-
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-------nl~LnlwDcGgqe~fme--n~~~~q~ 75 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-------NLVLNLWDCGGQEEFME--NYLSSQE 75 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-------hheeehhccCCcHHHHH--HHHhhcc
Confidence 367789999999999866654322111 2345667766555554321 01367899999843210 0011111
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
-...+..+++++|+|++..+...|+......|+..-.....-.+.+.+.|+||...
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 12346789999999999887777776665544432222234557788999999864
No 352
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=2.9e-05 Score=72.62 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=96.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.++.++|.-+.||+|++++....+-. ..|+-|+--...-.+..+. .+ ..+|..|||+|+....- .+--
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe-~~y~at~Gv~~~pl~f~tn---~g--~irf~~wdtagqEk~gg------lrdg 78 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFE-KTYPATLGVEVHPLLFDTN---RG--QIRFNVWDTAGQEKKGG------LRDG 78 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccce-ecccCcceeEEeeeeeecc---cC--cEEEEeeecccceeecc------cccc
Confidence 35568999999999999988654321 2233332111111111100 00 13789999999955321 1111
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHH-HHHHhcCCceeccccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT-EEILKIGCDKVTSETE 405 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~-~~l~~~g~~~~sa~~~ 405 (454)
.+|. ....++++|.+...+......|.+.+..-. .+.|++++.||.|........+.+. -.-..+.+.+.++...
T Consensus 79 yyI~-~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn 154 (216)
T KOG0096|consen 79 YYIQ-GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSN 154 (216)
T ss_pred cEEe-cceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccccccccccceeeecccceeEEeecccc
Confidence 2232 456788999998888877777777666432 4689999999999876431111111 0112345677888888
Q ss_pred ccHHHHHHHHHhhcC
Q 012884 406 LSSEDAVKSLSTEGG 420 (454)
Q Consensus 406 ~~~~e~~~~l~~~~~ 420 (454)
.+++--+.++.+.+.
T Consensus 155 ~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 155 YNFERPFLWLARKLT 169 (216)
T ss_pred cccccchHHHhhhhc
Confidence 888888888887763
No 353
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00016 Score=79.43 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=79.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC-CCceee------eccceeeeCCCC-CCcccccccEEEecCCCCcccccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD-YPFTTL------MPNLGRLDGDPT-LGAEKYSSEATLADLPGLIEGAHL 317 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~-~pfTT~------~p~~g~v~~~~~-~~~~~~~~~i~liDTPGii~~a~~ 317 (454)
++.+++|-.-.-|||||...|..++..|++ .+++-+ |.+..-++.... .....-+..+.++|+||+++..+
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s- 87 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS- 87 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh-
Confidence 567888888899999999999887665533 233222 111111111100 00000023689999999977543
Q ss_pred CCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 318 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 318 ~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..-.+.+-||..+++||+-.+...+.+..+++... .+..+++|+||+|
T Consensus 88 ------evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~------~~~~~~lvinkid 135 (887)
T KOG0467|consen 88 ------EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI------EGLKPILVINKID 135 (887)
T ss_pred ------hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH------ccCceEEEEehhh
Confidence 23345566999999999999988888888777655 3678899999999
No 354
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.63 E-value=5.7e-05 Score=75.65 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=44.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCC------CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 318 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~------~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~ 318 (454)
.|-+||.||+|||||+|++.... ..++.+|+.|+.... .+.+.. ...+.++||||++.....+
T Consensus 145 ~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~-------rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 145 NVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISH-------RPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEecc-------CCceEEecCCCcCCCCCCC
Confidence 35689999999999999996542 234889999985433 222211 2468999999998765443
No 355
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.62 E-value=0.00012 Score=68.24 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=56.4
Q ss_pred chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-----Hhc--
Q 012884 323 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LKI-- 395 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l-----~~~-- 395 (454)
..+..+++++|++++|+|+++.....+.. + ... ..++|+++|+||+|+....+..+.+.... ...
T Consensus 26 ~~l~~~~~~ad~il~VvD~~~~~~~~~~~-l--~~~-----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 26 NLLSSISPKKALVVHVVDIFDFPGSLIPR-L--RLF-----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHhcccCCcEEEEEEECccCCCccchh-H--HHh-----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 34556779999999999998754222211 1 111 13689999999999975322222222111 222
Q ss_pred ---CCceecccccccHHHHHHHHHhhc
Q 012884 396 ---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 ---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+..+++....++++.++.+...+
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 245678889999999998887643
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.60 E-value=0.00017 Score=66.47 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=57.2
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Cceec
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVT 401 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~s 401 (454)
+..+.++++|++++|+|++.+....+.. +...+ .++|.++|+||+|+.+..+ ...+.+.+...+ +...+
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADPKK-TKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcCCeEEEEE
Confidence 4567889999999999998764433322 22222 2689999999999975432 233334444322 34577
Q ss_pred ccccccHHHHHHHHHhh
Q 012884 402 SETELSSEDAVKSLSTE 418 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~ 418 (454)
+....++.+....+...
T Consensus 83 a~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 83 AKSGKGVKKLLKAAKKL 99 (171)
T ss_pred CCCcccHHHHHHHHHHH
Confidence 77888888888777654
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.59 E-value=0.00026 Score=74.78 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=39.8
Q ss_pred ccEEEecCCCCccccccCCcccchhhc--ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~--~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..++|+||||.... ...+-..... .....+.+++|+|++.+. +....+ +.|+. .-.+.-+|+||+|-
T Consensus 183 ~DvViIDTaGr~~~---d~~lm~El~~i~~~~~p~e~lLVlda~~Gq--~a~~~a----~~F~~--~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ---EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ--AAEAQA----KAFKD--SVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcc---hHHHHHHHHHHhhhcCCcEEEEEeccccCh--hHHHHH----HHHHh--ccCCcEEEEECccC
Confidence 37999999997432 1222222211 233468899999998653 222222 22221 12456788999997
Q ss_pred CC
Q 012884 379 PE 380 (454)
Q Consensus 379 ~~ 380 (454)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 54
No 358
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.55 E-value=0.00053 Score=62.14 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=38.4
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..++|+||||+.. .+...+..+|.+++|...+. .+.+..+.-+. ....-++|+||+|
T Consensus 92 ~D~iiIDtaG~~~----------~~~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~-------~~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ----------SEVDIASMADTTVVVMAPGA---GDDIQAIKAGI-------MEIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh----------hhhhHHHhCCEEEEEECCCc---hhHHHHhhhhH-------hhhcCEEEEeCCC
Confidence 3799999999743 23345667999999998763 33443333222 2456699999998
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.50 E-value=0.00026 Score=70.51 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=56.7
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Cceec
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVT 401 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~s 401 (454)
++.+.++.+|++|+|+|+..+....+... .+.+ .++|+|+|+||+|+.+.. ..+.+.+.+...+ +...+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~i-~~~l-------~~kp~IiVlNK~DL~~~~-~~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNPMI-DEIR-------GNKPRLIVLNKADLADPA-VTKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCChhH-HHHH-------CCCCEEEEEEccccCCHH-HHHHHHHHHHHcCCeEEEEE
Confidence 46678899999999999987655444322 2222 268999999999997543 2344444554433 34567
Q ss_pred ccccccHHHHHHHHHhh
Q 012884 402 SETELSSEDAVKSLSTE 418 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~ 418 (454)
+....+..+..+.+...
T Consensus 85 a~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKL 101 (276)
T ss_pred CCCcccHHHHHHHHHHH
Confidence 77777777776665543
No 360
>PRK01889 GTPase RsgA; Reviewed
Probab=97.50 E-value=4.8e-05 Score=78.62 Aligned_cols=70 Identities=21% Similarity=0.144 Sum_probs=43.3
Q ss_pred eCCceeEEEecCCc-----eecccc--CcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCCCHH
Q 012884 190 PVPLGTVVKHKRGK-----LFSDLA--HPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGKS 260 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-----~~~dl~--~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGKS 260 (454)
++|+.+++||.|-. ....+. ..|.++ ++|+.|.|...+...... -..++++|.+|+|||
T Consensus 142 ~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~~------------g~~~~lvG~sgvGKS 209 (356)
T PRK01889 142 GAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLSG------------GKTVALLGSSGVGKS 209 (356)
T ss_pred CCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhhc------------CCEEEEECCCCccHH
Confidence 46778899998741 111122 234333 678887664332221110 124689999999999
Q ss_pred HHHHHHHcCCC
Q 012884 261 TLLAAITHAKP 271 (454)
Q Consensus 261 TLlnaL~~~~~ 271 (454)
||+|.|.+...
T Consensus 210 tLin~L~g~~~ 220 (356)
T PRK01889 210 TLVNALLGEEV 220 (356)
T ss_pred HHHHHHHHhcc
Confidence 99999997643
No 361
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.49 E-value=0.0013 Score=60.53 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=55.3
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++|+|||+.... .....+..+|.+++|+..+.. ...+...+.+.++.+ +.|..+|+||+|...
T Consensus 93 ~d~viiDtpp~~~~---------~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~~ 157 (179)
T cd03110 93 AELIIIDGPPGIGC---------PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLND 157 (179)
T ss_pred CCEEEEECcCCCcH---------HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCc
Confidence 47999999976432 234556789999999998853 455666666666643 467889999999754
Q ss_pred hHHHHHHHHHHHHhcCCc
Q 012884 381 ARDRLQSLTEEILKIGCD 398 (454)
Q Consensus 381 ~~e~~~~l~~~l~~~g~~ 398 (454)
. ..+++.+.++..+++
T Consensus 158 ~--~~~~~~~~~~~~~~~ 173 (179)
T cd03110 158 E--IAEEIEDYCEEEGIP 173 (179)
T ss_pred c--hHHHHHHHHHHcCCC
Confidence 3 234555566665553
No 362
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.49 E-value=0.00016 Score=67.25 Aligned_cols=85 Identities=24% Similarity=0.355 Sum_probs=47.4
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
..+.|+-+.|+-+.... -+....+...-..+.++.|+|+..-....+. ..+...+. ..=+||+||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--------~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA--------FADVIVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC--------T-SEEEEE-GGGH
T ss_pred cCEEEECCccccccchh--hhccccccccccccceeEEeccccccccccchhhhhhcch--------hcCEEEEeccccC
Confidence 36888999997654332 0011222333456889999999652111122 22233333 3348999999999
Q ss_pred ChHHHHHHHHHHHHhc
Q 012884 380 EARDRLQSLTEEILKI 395 (454)
Q Consensus 380 ~~~e~~~~l~~~l~~~ 395 (454)
+..+.++.+++.++++
T Consensus 155 ~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 155 SDEQKIERVREMIREL 170 (178)
T ss_dssp HHH--HHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH
Confidence 7654456777666654
No 363
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00046 Score=69.99 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=83.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCC-----------CccCC-----CceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKP-----------DIADY-----PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~-----------~Ia~~-----pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
--+||-||.-.-|||||..+|+..-. .|..- -+.|+ +...+.|... .+.|.=+|+|
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa------~RhYaH~DCP 125 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETA------KRHYAHTDCP 125 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeecc------ccccccCCCC
Confidence 34789999999999999999975311 11111 13344 2334444322 2468889999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCCChHHHHH--
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLPEARDRLQ-- 386 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~-kp~IvV~NK~Dl~~~~e~~~-- 386 (454)
|+-+ +.+....-..+-|..++||.++++...+.-+-+.-.-+ .+ .-++|.+||.|++++.|.++
T Consensus 126 GHAD-------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ------VGV~~ivvfiNKvD~V~d~e~leLV 192 (449)
T KOG0460|consen 126 GHAD-------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ------VGVKHIVVFINKVDLVDDPEMLELV 192 (449)
T ss_pred chHH-------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH------cCCceEEEEEecccccCCHHHHHHH
Confidence 9843 22333344466899999999999765555444432222 24 44667799999997655444
Q ss_pred --HHHHHHHhcCCc
Q 012884 387 --SLTEEILKIGCD 398 (454)
Q Consensus 387 --~l~~~l~~~g~~ 398 (454)
++++.|..+++.
T Consensus 193 EmE~RElLse~gf~ 206 (449)
T KOG0460|consen 193 EMEIRELLSEFGFD 206 (449)
T ss_pred HHHHHHHHHHcCCC
Confidence 345667777764
No 364
>PRK00098 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00075 Score=68.07 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=56.6
Q ss_pred cccccEEEEEEeCCCCCCHhh-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--ceeccccc
Q 012884 329 LRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSETE 405 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d-~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~--~~~sa~~~ 405 (454)
+.++|++++|+|+.++.+... +..+...+.. .++|.++|+||+||.+..+..+++.+.+...++ ..+++...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 578999999999987654333 2333333432 478999999999997544444555555655554 45677788
Q ss_pred ccHHHHHHHHH
Q 012884 406 LSSEDAVKSLS 416 (454)
Q Consensus 406 ~~~~e~~~~l~ 416 (454)
.++.+.+..+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 88888776653
No 365
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.45 E-value=0.00043 Score=52.72 Aligned_cols=48 Identities=31% Similarity=0.566 Sum_probs=30.7
Q ss_pred hhcccccccEEEEEEeCCC--CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 325 FLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 325 fl~~i~~advll~ViDas~--~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
.++|+ .++++|++|.|. +-+.++...|.++++.. ..++|+++|+||+|
T Consensus 9 AL~hL--~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~---F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHL--ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL---FPNKPVIVVLNKID 58 (58)
T ss_dssp GGGGT---SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH---TTTS-EEEEE--TT
T ss_pred HHHhh--cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH---cCCCCEEEEEeccC
Confidence 45666 578999999986 55666666667777753 24899999999998
No 366
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.44 E-value=8.8e-05 Score=74.46 Aligned_cols=54 Identities=28% Similarity=0.269 Sum_probs=35.7
Q ss_pred cccccCCCCCHHHHHHHHHcCC-CC---ccC----CCceeeeccceeeeCCCCCCcccccccEEEecCCCCcc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK-PD---IAD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 313 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~-~~---Ia~----~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~ 313 (454)
..++|.+|||||||+|+|..+. .. |+. --.||....+-.+. ..=.|+||||+.+
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-----------~gG~iiDTPGf~~ 228 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-----------GGGWIIDTPGFRS 228 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-----------CCCEEEeCCCCCc
Confidence 3678999999999999998642 22 222 12466554433332 1347899999965
No 367
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00095 Score=68.70 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=76.2
Q ss_pred ccccCCCCCHHHHHHHHHcCCC----Cc---cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc--
Q 012884 250 TDKGLPNAGKSTLLAAITHAKP----DI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-- 320 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~~~----~I---a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~-- 320 (454)
-++|..+.|||||+|.|..... .+ ...+-.|.....-.+... ...+.-+++++||||+.+.--....
T Consensus 25 mvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie----e~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 25 MVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE----ENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred EEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec----CCCeEEeeEEeccCCCcccccccccch
Confidence 4789999999999999876521 11 111111221111111111 1122347999999999653211000
Q ss_pred -----ccchhh-----------cccc--cccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 321 -----LGRNFL-----------RHLR--RTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 321 -----lg~~fl-----------~~i~--~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+..+|- ..+. |.+++||.|..+. +...-|++.+.. +. ....+|=|+-|+|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~-l~------~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKK-LS------KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHH-Hh------ccccccceeeccccCCH
Confidence 011111 1233 7899999999876 355566666544 33 25778889999999887
Q ss_pred HHH---HHHHHHHHHhcCC
Q 012884 382 RDR---LQSLTEEILKIGC 397 (454)
Q Consensus 382 ~e~---~~~l~~~l~~~g~ 397 (454)
++. .+.+.+.+....+
T Consensus 174 ~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHHHHHHHHHHHHcCc
Confidence 553 2233444554433
No 368
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.41 E-value=0.00098 Score=68.06 Aligned_cols=87 Identities=25% Similarity=0.238 Sum_probs=53.2
Q ss_pred cEEEecCCCCccccccCCcccc-hhhcccccccEEEEEEeCCCCCCHhh--HHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGR-NFLRHLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~-~fl~~i~~advll~ViDas~~~~~~d--~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..+++-|-|+-+....-..+.. ..++..-+-|.+|-|||+..-....+ .+...+.+. -.=+||+||.|+
T Consensus 86 D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia--------~AD~ivlNK~Dl 157 (323)
T COG0523 86 DRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA--------FADVIVLNKTDL 157 (323)
T ss_pred CEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH--------hCcEEEEecccC
Confidence 5889999999665322121211 12223345688999999986422111 122223333 334899999999
Q ss_pred CChHHHHHHHHHHHHhcCC
Q 012884 379 PEARDRLQSLTEEILKIGC 397 (454)
Q Consensus 379 ~~~~e~~~~l~~~l~~~g~ 397 (454)
.++.+ ++.+.+.+.+++-
T Consensus 158 v~~~~-l~~l~~~l~~lnp 175 (323)
T COG0523 158 VDAEE-LEALEARLRKLNP 175 (323)
T ss_pred CCHHH-HHHHHHHHHHhCC
Confidence 99764 7788888777643
No 369
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.40 E-value=0.00033 Score=70.25 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=60.8
Q ss_pred cCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH
Q 012884 307 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ 386 (454)
Q Consensus 307 DTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~ 386 (454)
--||+...+ .+++.+.++.+|++|+|+|+..+...++.. +.+.+ .++|+++|+||+|+.+. +..+
T Consensus 6 wfpgHm~k~------~~~l~~~l~~aDvIL~VvDar~p~~~~~~~-l~~~~-------~~kp~iiVlNK~DL~~~-~~~~ 70 (287)
T PRK09563 6 WFPGHMAKA------RREIKENLKLVDVVIEVLDARIPLSSENPM-IDKII-------GNKPRLLILNKSDLADP-EVTK 70 (287)
T ss_pred CcHHHHHHH------HHHHHHHhhhCCEEEEEEECCCCCCCCChh-HHHHh-------CCCCEEEEEEchhcCCH-HHHH
Confidence 357776543 224677889999999999998765444322 22222 26899999999999754 3344
Q ss_pred HHHHHHHhcC--CceecccccccHHHHHHHHH
Q 012884 387 SLTEEILKIG--CDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 387 ~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~ 416 (454)
.+.+.+...+ +...++....+..+....+.
T Consensus 71 ~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~ 102 (287)
T PRK09563 71 KWIEYFEEQGIKALAINAKKGQGVKKILKAAK 102 (287)
T ss_pred HHHHHHHHcCCeEEEEECCCcccHHHHHHHHH
Confidence 5555554433 34556667777776665554
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.39 E-value=0.00085 Score=68.42 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=51.4
Q ss_pred ccEEEecCCCCccccccC-Ccccchhhccc-----ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 012884 301 SEATLADLPGLIEGAHLG-KGLGRNFLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 374 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~-~~lg~~fl~~i-----~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~N 374 (454)
..++|+||||........ +.+. .+.+.+ ...+-.++|+|++.+ .+++.......+. -.+.-+|+|
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~------~~~~giIlT 267 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELK-KIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEA------VGLTGIILT 267 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHH-HHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhh------CCCCEEEEE
Confidence 379999999985421110 1111 122211 236778999999964 3444433222221 245578999
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCceecccccccH
Q 012884 375 KIDLPEARDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 375 K~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
|+|....- -.+.+.....+.+.........+
T Consensus 268 KlD~t~~~---G~~l~~~~~~~~Pi~~v~~Gq~~ 298 (318)
T PRK10416 268 KLDGTAKG---GVVFAIADELGIPIKFIGVGEGI 298 (318)
T ss_pred CCCCCCCc---cHHHHHHHHHCCCEEEEeCCCCh
Confidence 99965432 22333334445655555555554
No 371
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.38 E-value=0.0013 Score=64.03 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=80.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC------Cc--cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP------DI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 319 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~------~I--a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~ 319 (454)
.|-+||..+.|||||+|.|..++. .. -++|-||-.-....+-.+. ...-+++++||||+-+......
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~-----gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEK-----GVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeec-----ceEEEEEEecCCCcccccCccc
Confidence 456899999999999999976532 11 2466666433223222111 1123789999999954321110
Q ss_pred c---cc----c---hh---------hccc--ccccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 320 G---LG----R---NF---------LRHL--RRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 320 ~---lg----~---~f---------l~~i--~~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
- +. . ++ .++| .|.+.+||.|..+. ....-|++.+...-+ -..+|-|+-|+|
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-------vvNvvPVIakaD 195 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-------VVNVVPVIAKAD 195 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-------hheeeeeEeecc
Confidence 0 00 0 11 1233 24788899998876 223345555544222 244677889999
Q ss_pred CCChHH---HHHHHHHHHHhcCCceec
Q 012884 378 LPEARD---RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 378 l~~~~e---~~~~l~~~l~~~g~~~~s 401 (454)
-..-+| ..+.+++++...++...+
T Consensus 196 tlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccccc
Confidence 765332 345566777777665443
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.37 E-value=0.0011 Score=59.80 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=50.1
Q ss_pred cEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-C--CceecccccccHH
Q 012884 333 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-G--CDKVTSETELSSE 409 (454)
Q Consensus 333 dvll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~-g--~~~~sa~~~~~~~ 409 (454)
|++|+|+|+..+....+.......+.. .++|+|+|+||+|+.... ...++...+... + +...++....+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~-~~~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPKE-VLRKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCHH-HHHHHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999876554443222122331 469999999999997653 233333333332 2 3456777888888
Q ss_pred HHHHHHHh
Q 012884 410 DAVKSLST 417 (454)
Q Consensus 410 e~~~~l~~ 417 (454)
+..+.+..
T Consensus 75 ~L~~~i~~ 82 (155)
T cd01849 75 KKESAFTK 82 (155)
T ss_pred hHHHHHHH
Confidence 87776653
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.34 E-value=0.00034 Score=82.64 Aligned_cols=133 Identities=22% Similarity=0.179 Sum_probs=70.4
Q ss_pred cccCCCCCHHHHHHHHHcCCCCccCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccc----cCCcccchh
Q 012884 251 DKGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----LGKGLGRNF 325 (454)
Q Consensus 251 lVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~----~~~~lg~~f 325 (454)
+||.||+||||||+.- +-+....+....+. ....++-+ -++++.++.+++||+|..-... .....-..|
T Consensus 116 viG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 116 VIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHHHHHH
Confidence 6899999999999976 33332222110100 00000100 1223457899999999653211 011111234
Q ss_pred hccc------ccccEEEEEEeCCCCC--CHhh----HHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCh-HHHHHHHH
Q 012884 326 LRHL------RRTRLLVHVIDAAAEN--PVND----YRTVKEELRMYNPD-YLERPFIVVLNKIDLPEA-RDRLQSLT 389 (454)
Q Consensus 326 l~~i------~~advll~ViDas~~~--~~~d----~~~l~~eL~~~~~~-~~~kp~IvV~NK~Dl~~~-~e~~~~l~ 389 (454)
+..+ +-.+.||++||+++-. ..++ .+.++..|++.... -...|+.||++|||+... .+.+..+.
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF~~~f~~l~ 267 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFEEFFADLD 267 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCHHHHHHhCC
Confidence 4433 3379999999987632 1221 12333333322211 147999999999998754 33334443
No 374
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.31 E-value=0.0012 Score=67.99 Aligned_cols=84 Identities=24% Similarity=0.260 Sum_probs=48.1
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC--H----hh-----------------HHHHHHHHH
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP--V----ND-----------------YRTVKEELR 358 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~--~----~d-----------------~~~l~~eL~ 358 (454)
..+++.|.|+-+.+..-..+....+...-+.|.+|.|||+..-.. . .. ...+...+.
T Consensus 94 d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~ 173 (341)
T TIGR02475 94 DHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQLA 173 (341)
T ss_pred CEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHHH
Confidence 688999999965432222221112222235688999999974211 0 00 011122222
Q ss_pred hcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh
Q 012884 359 MYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK 394 (454)
Q Consensus 359 ~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~ 394 (454)
-.=+||+||+|+.++ +.++.+.+.+..
T Consensus 174 --------~AD~IvlnK~Dl~~~-~~l~~~~~~l~~ 200 (341)
T TIGR02475 174 --------CADLVILNKADLLDA-AGLARVRAEIAA 200 (341)
T ss_pred --------hCCEEEEeccccCCH-HHHHHHHHHHHH
Confidence 334899999999986 446677777765
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=97.21 E-value=0.0015 Score=67.48 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=57.1
Q ss_pred cccccccEEEEEEeCCCCCC-HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--ceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~-~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~--~~~sa~ 403 (454)
..+.++|.+++|+|+.++.. ...+..+...+. ..++|.++|+||+||.+..+ .+.+.+.+...++ ..+++.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-----~~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iSA~ 158 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE-----STGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFISVE 158 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEEcC
Confidence 35788999999999986542 222233322232 14799999999999986533 4556666666665 445777
Q ss_pred ccccHHHHHHHHH
Q 012884 404 TELSSEDAVKSLS 416 (454)
Q Consensus 404 ~~~~~~e~~~~l~ 416 (454)
...++.+.+..+.
T Consensus 159 tg~GI~eL~~~L~ 171 (352)
T PRK12289 159 TGIGLEALLEQLR 171 (352)
T ss_pred CCCCHHHHhhhhc
Confidence 8888888877765
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.14 E-value=0.0024 Score=63.75 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=50.9
Q ss_pred ccEEEecCCCCccccccCCccc---chhhcccc-----cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLG---RNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV 372 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg---~~fl~~i~-----~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV 372 (454)
..++|+||||..... ..+- ..+.+.+. .+|.+++|+|++.+ .+++.......+. -.+.-+|
T Consensus 155 ~D~ViIDT~G~~~~d---~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~------~~~~g~I 223 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK---VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEA------VGLTGII 223 (272)
T ss_pred CCEEEEeCCCCCcch---HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhh------CCCCEEE
Confidence 379999999985421 1111 11222222 37899999999753 4555544333332 1356789
Q ss_pred EeCCCCCChHHHHHHHHHHHHhcCCceecccccccH
Q 012884 373 LNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 373 ~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
+||+|........ .......+.+.........+
T Consensus 224 lTKlDe~~~~G~~---l~~~~~~~~Pi~~~~~Gq~~ 256 (272)
T TIGR00064 224 LTKLDGTAKGGII---LSIAYELKLPIKFIGVGEKI 256 (272)
T ss_pred EEccCCCCCccHH---HHHHHHHCcCEEEEeCCCCh
Confidence 9999986543222 22222334444444444444
No 377
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.13 E-value=0.0027 Score=68.44 Aligned_cols=153 Identities=19% Similarity=0.112 Sum_probs=81.8
Q ss_pred ccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccce-eeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcc
Q 012884 250 TDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 328 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g-~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~ 328 (454)
-++|..|+|||.||+++.+..-.- ++.++|-..+.. .+.... . ...+.+-|.+-. ... -+.. +.
T Consensus 429 ~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g---~---~k~LiL~ei~~~-~~~----~l~~---ke 493 (625)
T KOG1707|consen 429 FVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKG---Q---QKYLILREIGED-DQD----FLTS---KE 493 (625)
T ss_pred EEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeecc---c---cceEEEeecCcc-ccc----cccC---cc
Confidence 457999999999999999854221 222332211111 111110 0 123455555433 111 0111 11
Q ss_pred cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH-HHHHHhcCCceeccc-cc-
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILKIGCDKVTSE-TE- 405 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l-~~~l~~~g~~~~sa~-~~- 405 (454)
..||++++|+|++.+.+.+-.. .+.+.|... ...|+++|+.|+|+.+..+..... .+...++++..+... ..
T Consensus 494 -~~cDv~~~~YDsS~p~sf~~~a---~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 494 -AACDVACLVYDSSNPRSFEYLA---EVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred -ceeeeEEEecccCCchHHHHHH---HHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC
Confidence 5699999999999876555433 344444333 579999999999998654322111 233344555433111 11
Q ss_pred ccHHHHHHHHHhhcCcc
Q 012884 406 LSSEDAVKSLSTEGGEA 422 (454)
Q Consensus 406 ~~~~e~~~~l~~~~~~~ 422 (454)
....+.+..+.+++..+
T Consensus 569 ~~s~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 569 LSSNELFIKLATMAQYP 585 (625)
T ss_pred CCCchHHHHHHHhhhCC
Confidence 23356777777666443
No 378
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0011 Score=71.47 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=50.3
Q ss_pred ccEEEecCCCCccccccC-CcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 301 SEATLADLPGLIEGAHLG-KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~-~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
..++|+||||........ ..+ ..+..... ...++|++++.. ..++..+ ++.|. ...+.-+|+||+|..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL--~~L~aa~~-~a~lLVLpAtss--~~Dl~ei---i~~f~---~~~~~gvILTKlDEt 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQL--NWLRAARQ-VTSLLVLPANAH--FSDLDEV---VRRFA---HAKPQGVVLTKLDET 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHH--HHHHHhhc-CCcEEEEECCCC--hhHHHHH---HHHHH---hhCCeEEEEecCcCc
Confidence 479999999985432110 001 12233222 346788888753 3444433 33332 135678999999985
Q ss_pred ChHHHHHHHHHHHHhcCCceecccccccH
Q 012884 380 EARDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 380 ~~~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
.. +-.+...+...+.+.........+
T Consensus 498 ~~---lG~aLsv~~~~~LPI~yvt~GQ~V 523 (559)
T PRK12727 498 GR---FGSALSVVVDHQMPITWVTDGQRV 523 (559)
T ss_pred cc---hhHHHHHHHHhCCCEEEEeCCCCc
Confidence 43 234444445555555544444444
No 379
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.00092 Score=69.53 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++|+|.+||||||++..|...
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999753
No 380
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0011 Score=70.19 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=75.6
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCcc-CCCcee------eeccceeeeCCCCCC----------------c-cccc
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDIA-DYPFTT------LMPNLGRLDGDPTLG----------------A-EKYS 300 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~Ia-~~pfTT------~~p~~g~v~~~~~~~----------------~-~~~~ 300 (454)
.++.+.+|-.-.-|||||..+|.....-|+ ...+.| .|.+...+++....- . ...+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 356677777888899999999964322221 222221 122222222111000 0 0001
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
--+.++|.||+.+.+ ...-.+++-+|..|+|+|.-++.-.+..-.|++.+.. .+.-++|+||+|.
T Consensus 98 FLiNLIDSPGHVDFS-------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E------RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE------RIKPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccch-------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh------hccceEEeehhhH
Confidence 147899999997643 4456778889999999999988777776677777763 4555778999995
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.05 E-value=0.0027 Score=58.27 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=40.2
Q ss_pred ccEEEecCCCCcccccc-CCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 301 SEATLADLPGLIEGAHL-GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~-~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
..++|+||||....... -..+ ..+. .....+.+++|+|+... .+..+.+....+. .+ ..-+|+||+|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l-~~l~-~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~-----~~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEEL-KKIK-RVVKPDEVLLVVDAMTG--QDAVNQAKAFNEA-----LG-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHH-HHHH-hhcCCCeEEEEEECCCC--hHHHHHHHHHHhh-----CC-CCEEEEECCcCC
Confidence 36899999998531000 0001 1122 22458999999998643 3444443333332 12 356788999987
Q ss_pred Ch
Q 012884 380 EA 381 (454)
Q Consensus 380 ~~ 381 (454)
..
T Consensus 153 ~~ 154 (173)
T cd03115 153 AR 154 (173)
T ss_pred CC
Confidence 64
No 382
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.04 E-value=0.0018 Score=61.26 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=47.5
Q ss_pred EEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHH----hcCCceecccccccH
Q 012884 334 LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL----KIGCDKVTSETELSS 408 (454)
Q Consensus 334 vll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~----~~g~~~~sa~~~~~~ 408 (454)
.-|+|||.+.++-. -++..|... +.=++|+||.||...-+. ++...+... +..+..++..+..+.
T Consensus 120 ~~v~VidvteGe~~---------P~K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 120 LRVVVIDVTEGEDI---------PRKGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred eEEEEEECCCCCCC---------cccCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 77999999986411 122122322 366899999999864221 233333333 356778899999999
Q ss_pred HHHHHHHHh
Q 012884 409 EDAVKSLST 417 (454)
Q Consensus 409 ~e~~~~l~~ 417 (454)
.+++.++..
T Consensus 190 ~~~~~~i~~ 198 (202)
T COG0378 190 DEWLRFIEP 198 (202)
T ss_pred HHHHHHHHh
Confidence 999887653
No 383
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.002 Score=66.11 Aligned_cols=139 Identities=24% Similarity=0.267 Sum_probs=80.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc---------------------cCCCceee--eccceeeeCCCCCCcc----ccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI---------------------ADYPFTTL--MPNLGRLDGDPTLGAE----KYS 300 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I---------------------a~~pfTT~--~p~~g~v~~~~~~~~~----~~~ 300 (454)
+|+++|-..+|||||+-.|+..+-.- +...+.++ +..-..++|....... .-.
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SS 248 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSS 248 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhc
Confidence 57899999999999999987542110 11111111 1111122222111100 002
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccc--cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~--~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
+-++++|.+|..+..+. ....+. -.+..++|+.+..+..+..-+-|--.+. .+.|+.++++|+|+
T Consensus 249 KlvTfiDLAGh~kY~~T-------Ti~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A------L~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKT-------TIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA------LNIPFFVLVTKMDL 315 (591)
T ss_pred ceEEEeecccchhhhee-------eeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH------hCCCeEEEEEeecc
Confidence 34899999999654321 111111 2467889999988766655554433333 47999999999999
Q ss_pred CCh---HHHHHHHHHHHHhcCCce
Q 012884 379 PEA---RDRLQSLTEEILKIGCDK 399 (454)
Q Consensus 379 ~~~---~e~~~~l~~~l~~~g~~~ 399 (454)
.+. +...+++...+...|+..
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~k 339 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTK 339 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccc
Confidence 986 334566666677666543
No 384
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.99 E-value=0.0029 Score=63.50 Aligned_cols=82 Identities=17% Similarity=0.103 Sum_probs=55.1
Q ss_pred cccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC--ceeccccc
Q 012884 329 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSETE 405 (454)
Q Consensus 329 i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~--~~~sa~~~ 405 (454)
+.++|++++|+|+..+. +...++.+...+.. .++|.++|+||+||.+..+. ..........++ ..+++...
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDEEE-ELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChHHH-HHHHHHHHhCCCeEEEEECCCC
Confidence 67899999999998876 44555554444442 47899999999999765322 222233333444 45678888
Q ss_pred ccHHHHHHHHH
Q 012884 406 LSSEDAVKSLS 416 (454)
Q Consensus 406 ~~~~e~~~~l~ 416 (454)
.++++....+.
T Consensus 150 ~gi~~L~~~L~ 160 (287)
T cd01854 150 EGLDELREYLK 160 (287)
T ss_pred ccHHHHHhhhc
Confidence 88877776654
No 385
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.97 E-value=0.002 Score=65.75 Aligned_cols=83 Identities=13% Similarity=0.261 Sum_probs=45.6
Q ss_pred cEEEecCCCCccccccCCcc-cchhhcccccccEEEEEEeCCCCCC-HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGL-GRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~l-g~~fl~~i~~advll~ViDas~~~~-~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
..+++.|-|+-+....-..+ ....+...-+.+.++.|+|+..... ..+.......+. -.=+||+||+|+.
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~--------~AD~IvlnK~Dl~ 163 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG--------YADRILLTKTDVA 163 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH--------hCCEEEEeccccC
Confidence 57889999986543221111 0112222234688999999975321 111222223333 2348999999998
Q ss_pred ChHHHHHHHHHHHHhc
Q 012884 380 EARDRLQSLTEEILKI 395 (454)
Q Consensus 380 ~~~e~~~~l~~~l~~~ 395 (454)
.+. +.+.+.+..+
T Consensus 164 ~~~---~~~~~~l~~l 176 (318)
T PRK11537 164 GEA---EKLRERLARI 176 (318)
T ss_pred CHH---HHHHHHHHHh
Confidence 753 3455555544
No 386
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.0021 Score=68.02 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=54.1
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++|+||||..............++.......-.++|++++.. ..+++.+ +..|.. -.+--+|++|+|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~---~~~f~~---~~~~~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDI---YKHFSR---LPLDGLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHH---HHHhCC---CCCCEEEEecccccc
Confidence 37999999998432111000111233322233566888998753 3444433 333331 123368899999754
Q ss_pred hHHHHHHHHHHHHhcCCceecccccccHHHHH
Q 012884 381 ARDRLQSLTEEILKIGCDKVTSETELSSEDAV 412 (454)
Q Consensus 381 ~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~ 412 (454)
. .-.+...+...+++.........+-+.+
T Consensus 372 ~---~G~i~~~~~~~~lPv~yit~Gq~VpdDl 400 (424)
T PRK05703 372 S---LGSILSLLIESGLPISYLTNGQRVPDDI 400 (424)
T ss_pred c---ccHHHHHHHHHCCCEEEEeCCCCChhhh
Confidence 3 2345555566666666555555544443
No 387
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.90 E-value=0.0029 Score=65.31 Aligned_cols=141 Identities=21% Similarity=0.170 Sum_probs=79.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCC---------C-----ceeeeccceeeeCCCCC---------Cccc------
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADY---------P-----FTTLMPNLGRLDGDPTL---------GAEK------ 298 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~---------p-----fTT~~p~~g~v~~~~~~---------~~~~------ 298 (454)
-||..|.-++|||||+-+|+-.++.-++- + +-|-+.....+-++... ....
T Consensus 119 ~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~ 198 (527)
T COG5258 119 LVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKR 198 (527)
T ss_pred EEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhh
Confidence 47888999999999999986544322110 0 11112222222221100 0000
Q ss_pred ccccEEEecCCCCccccccCCcccchhhccc--ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 012884 299 YSSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 299 ~~~~i~liDTPGii~~a~~~~~lg~~fl~~i--~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~ 376 (454)
-++-+.|+||-|+.. ..+.+++-+ ...|-.++|+-+.++.+...-+-+--.+. .+.|+++|++|+
T Consensus 199 aDklVsfVDtvGHEp-------wLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVvvTK~ 265 (527)
T COG5258 199 ADKLVSFVDTVGHEP-------WLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVVVTKI 265 (527)
T ss_pred cccEEEEEecCCccH-------HHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEEEEec
Confidence 012377999999833 222233333 45799999999988755444443333333 479999999999
Q ss_pred CCCChH---HHHHHHHHHHHhcCCceec
Q 012884 377 DLPEAR---DRLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 377 Dl~~~~---e~~~~l~~~l~~~g~~~~s 401 (454)
|+.+++ ...+++.+.|+..+-.+..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~ 293 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLI 293 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhccccee
Confidence 998753 2345555556554443333
No 388
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.88 E-value=0.0016 Score=66.33 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=48.5
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC----------HhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP----------VNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~----------~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
..+.++|+.|.. .....|....+.+++++||+|+++.+. ..+-..+.+.+-. ++.+.++|++
T Consensus 161 ~~~~~~DvgGq~-------~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pil 232 (317)
T cd00066 161 LKFRMFDVGGQR-------SERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSII 232 (317)
T ss_pred eEEEEECCCCCc-------ccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCEE
Confidence 378999999983 344567788899999999999987321 1111111122211 2334689999
Q ss_pred EEEeCCCCCC
Q 012884 371 VVLNKIDLPE 380 (454)
Q Consensus 371 vV~NK~Dl~~ 380 (454)
+++||.|+..
T Consensus 233 l~~NK~D~f~ 242 (317)
T cd00066 233 LFLNKKDLFE 242 (317)
T ss_pred EEccChHHHH
Confidence 9999999864
No 389
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.79 E-value=0.0052 Score=54.73 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.++++|||+.... .....+..||.+++|++.+... ..+...+.+++.... ...++.+|+|+++..
T Consensus 46 d~VIiD~p~~~~~---------~~~~~l~~aD~vviv~~~~~~s-~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~~ 110 (139)
T cd02038 46 DYIIIDTGAGISD---------NVLDFFLAADEVIVVTTPEPTS-ITDAYALIKKLAKQL---RVLNFRVVVNRAESP 110 (139)
T ss_pred CEEEEECCCCCCH---------HHHHHHHhCCeEEEEcCCChhH-HHHHHHHHHHHHHhc---CCCCEEEEEeCCCCH
Confidence 7999999986432 3345567799999999987532 333333334443221 345778999999743
No 390
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.77 E-value=0.0063 Score=65.12 Aligned_cols=130 Identities=22% Similarity=0.255 Sum_probs=77.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCC-------------------------------
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPT------------------------------- 293 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~------------------------------- 293 (454)
+++|.+||.-.|||||.|..+..++..- ++-..-|+.|.-.++.-.+.
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 5789999999999999999998775432 33233344333222211000
Q ss_pred -------------------CCcccccccEEEecCCCCccccccC------CcccchhhcccccccEEEEEEeCCCCCCHh
Q 012884 294 -------------------LGAEKYSSEATLADLPGLIEGAHLG------KGLGRNFLRHLRRTRLLVHVIDAAAENPVN 348 (454)
Q Consensus 294 -------------------~~~~~~~~~i~liDTPGii~~a~~~------~~lg~~fl~~i~~advll~ViDas~~~~~~ 348 (454)
.+++ ..+++++|.||+|..-..+ +.+......|+++.++|+++|--.+-+.
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPg--LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA-- 463 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPG--LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA-- 463 (980)
T ss_pred HhcccCCcccccceEEEeecCCC--cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch--
Confidence 0000 1358999999998643221 1122334567888888888874322111
Q ss_pred hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 349 DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 349 d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+-..+...+...+ ..++..|+|++|.|+.+.
T Consensus 464 ERSnVTDLVsq~D--P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 464 ERSIVTDLVSQMD--PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhHHHHHHhcC--CCCCeeEEEEeecchhhh
Confidence 1122334444444 458999999999999764
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.76 E-value=0.0019 Score=61.38 Aligned_cols=95 Identities=15% Similarity=0.039 Sum_probs=50.7
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++|+||||..........--..+++.+ ..+-+++|+|++.. .+++..+....+.. .+-=+|++|.|....
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~------~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAF------GIDGLILTKLDETAR 155 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHS------STCEEEEESTTSSST
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcc------cCceEEEEeecCCCC
Confidence 6999999998543211100111344444 46788999999865 34555444444322 233567999998654
Q ss_pred HHHHHHHHHHHHhcCCceecccccccH
Q 012884 382 RDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 382 ~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
-- .+-......+.+.........+
T Consensus 156 ~G---~~l~~~~~~~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 156 LG---ALLSLAYESGLPISYITTGQRV 179 (196)
T ss_dssp TH---HHHHHHHHHTSEEEEEESSSST
T ss_pred cc---cceeHHHHhCCCeEEEECCCCh
Confidence 32 2333344445544444444333
No 392
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.72 E-value=0.0011 Score=64.43 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=43.0
Q ss_pred ccEEEecCCCCccccccCCcccchhhccccccc---EEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR---LLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~ad---vll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~ 376 (454)
..+.++|.||+.|--.....+ ...++.++.-| ++|.++|+-- .++..-+..+.-.|...- ..+.|.|=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l-~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSL-NKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchH-HHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHh
Confidence 469999999998743322222 22334444333 4566677532 222332322222222110 1478999999999
Q ss_pred CCCCh
Q 012884 377 DLPEA 381 (454)
Q Consensus 377 Dl~~~ 381 (454)
|+...
T Consensus 174 Dl~~~ 178 (290)
T KOG1533|consen 174 DLLKK 178 (290)
T ss_pred HHHHh
Confidence 99764
No 393
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.67 E-value=0.0039 Score=64.23 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=48.4
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC----------CHhhHHHHHHHHHhcCCCCCCCCEEE
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 371 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~----------~~~d~~~l~~eL~~~~~~~~~kp~Iv 371 (454)
.+.++|+.|.. .....|..+.+.+++++||+|+++-+ ...+...+.+.+-. ++.+.+.|++|
T Consensus 185 ~~~~~DvgGqr-------~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~piil 256 (342)
T smart00275 185 FFRMFDVGGQR-------SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSIIL 256 (342)
T ss_pred EEEEEecCCch-------hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcEEE
Confidence 68999999983 33456777889999999999999732 11122222222221 23456899999
Q ss_pred EEeCCCCCC
Q 012884 372 VLNKIDLPE 380 (454)
Q Consensus 372 V~NK~Dl~~ 380 (454)
++||.|+..
T Consensus 257 ~~NK~D~~~ 265 (342)
T smart00275 257 FLNKIDLFE 265 (342)
T ss_pred EEecHHhHH
Confidence 999999874
No 394
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.67 E-value=0.0041 Score=57.81 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=37.5
Q ss_pred cEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Q 012884 333 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 395 (454)
Q Consensus 333 dvll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~ 395 (454)
|++++|+|+..+....+..+ .+.+.. . ..++|+|+|+||+|+.+. +.+..+.+.+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i-~~~~~l-~--~~~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQV-EEAVLQ-A--GGNKKLVLVLNKIDLVPK-ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHH-HHHHHh-c--cCCCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence 78999999987644433322 222110 0 136999999999999875 4455666666554
No 395
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0048 Score=72.13 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=69.2
Q ss_pred cccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc----hhh
Q 012884 251 DKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR----NFL 326 (454)
Q Consensus 251 lVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~----~fl 326 (454)
+||.||+||||++.-.- .+..++....-.-....|+-.. ++++.+.-+++||+|-.-.-........ .|+
T Consensus 130 viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~c-----dwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 130 VIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNC-----DWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred EecCCCCCcchHHhccc-ccCcchhhhccccccCCCCccc-----CcccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 58999999999986432 2222211111110111111111 2345678999999997543210111111 121
Q ss_pred ------cccccccEEEEEEeCCCC---CCHhh---HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCh-HHHHHHHH
Q 012884 327 ------RHLRRTRLLVHVIDAAAE---NPVND---YRTVKEELRMYNPDY-LERPFIVVLNKIDLPEA-RDRLQSLT 389 (454)
Q Consensus 327 ------~~i~~advll~ViDas~~---~~~~d---~~~l~~eL~~~~~~~-~~kp~IvV~NK~Dl~~~-~e~~~~l~ 389 (454)
+..+-.+.||+-+|+++- +..+. ...|+..|++....+ ...|+.|++||+|+... ++.+..+.
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~ 280 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLN 280 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccC
Confidence 223457999999998762 22222 223333333322111 46899999999999863 33333343
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0077 Score=63.64 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=49.2
Q ss_pred ccEEEecCCCCccccccCCcccch--hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~--fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..++++||+|...... .+... .+.......-.++|+|++.. .+++. +.+..|. .-..-=+|++|.|-
T Consensus 270 ~d~VLIDTaGrsqrd~---~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~---~~~~~f~---~~~~~~~I~TKlDE 338 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQ---MLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLD---EVISAYQ---GHGIHGCIITKVDE 338 (420)
T ss_pred CCEEEecCCCCCcchH---HHHHHHHHHhccCCCceEEEEEcCCCC--HHHHH---HHHHHhc---CCCCCEEEEEeeeC
Confidence 3689999999864311 11111 11222224467899999853 34443 3444443 12344678999997
Q ss_pred CChHHHHHHHHHHHHhcCCceecccccccH
Q 012884 379 PEARDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 379 ~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
...- -.+.......+.+.........+
T Consensus 339 t~~~---G~~l~~~~~~~lPi~yvt~Gq~V 365 (420)
T PRK14721 339 AASL---GIALDAVIRRKLVLHYVTNGQKV 365 (420)
T ss_pred CCCc---cHHHHHHHHhCCCEEEEECCCCc
Confidence 6532 22333344444544444444444
No 397
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.66 E-value=0.0061 Score=51.63 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=30.2
Q ss_pred cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.+.++.++.|+|.....+.+.. |...+.... ....|.+++.||.|+.+
T Consensus 44 ~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~--k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 44 YESFDVVLQCWRVDDRDSADNK--NVPEVLVGN--KSDLPILVGGNRDVLEE 91 (124)
T ss_pred cCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC--CCCCcEEEEeechhhHh
Confidence 3457888888988775544432 333333322 13578899999999843
No 398
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.58 E-value=0.0042 Score=64.33 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=51.6
Q ss_pred ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC
Q 012884 321 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 396 (454)
Q Consensus 321 lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g 396 (454)
+...|.+.++.+|+||.|+|+.++......+.=...++.. .++..|+|+||+||+. .|.++.+..+|.+.+
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~----gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAH----GNKKLILVLNKIDLVP-REVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhcc----CCceEEEEeehhccCC-HHHHHHHHHHHHhhC
Confidence 4456888899999999999999875543322211222221 2589999999999997 477899998888764
No 399
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.58 E-value=0.017 Score=52.49 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=43.9
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.++|+|||+-... .+...+..+|.+|+|++.+... ..+...+.+.++..+ .....+|+|++|...
T Consensus 64 d~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~~~~~~----~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER---------GFITAIAPADEALLVTTPEISS-LRDADRVKGLLEALG----IKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH---------HHHHHHHhCCcEEEEeCCCcch-HHHHHHHHHHHHHcC----CceEEEEEeCCcccc
Confidence 7999999986432 2445567899999999987643 444444555555421 245678999998653
No 400
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.56 E-value=0.0014 Score=62.59 Aligned_cols=78 Identities=28% Similarity=0.353 Sum_probs=45.2
Q ss_pred cccEEEecCCCCcccc-ccCCcccchhhccccc---ccEEEEEEeCCCCCCHhhHHHHHHHHHhcC-CCCCCCCEEEEEe
Q 012884 300 SSEATLADLPGLIEGA-HLGKGLGRNFLRHLRR---TRLLVHVIDAAAENPVNDYRTVKEELRMYN-PDYLERPFIVVLN 374 (454)
Q Consensus 300 ~~~i~liDTPGii~~a-~~~~~lg~~fl~~i~~---advll~ViDas~~~~~~d~~~l~~eL~~~~-~~~~~kp~IvV~N 374 (454)
...+.++|.||+|+-- |. -+-.++.+|+++ --.++|++|+.-- .+..+.+.-.+.... --..+.|.|=|++
T Consensus 97 eddylifDcPGQIELytH~--pVm~~iv~hl~~~~F~~c~Vylldsqf~--vD~~KfiSG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHL--PVMPQIVEHLKQWNFNVCVVYLLDSQFL--VDSTKFISGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecC--hhHHHHHHHHhcccCceeEEEEeccchh--hhHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 4579999999999832 21 123356666655 2356788887431 122222221111000 0014799999999
Q ss_pred CCCCCCh
Q 012884 375 KIDLPEA 381 (454)
Q Consensus 375 K~Dl~~~ 381 (454)
|+||...
T Consensus 173 KMDLlk~ 179 (273)
T KOG1534|consen 173 KMDLLKD 179 (273)
T ss_pred HHHHhhh
Confidence 9999875
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.0065 Score=63.68 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=48.9
Q ss_pred cEEEecCCCCccccccCCcccc---hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~---~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
.++|+||||..... ..+-. .+++. ...+.+++|+|++.. .+++. +.++.|+. -..-=+|++|+|-
T Consensus 322 DvVLIDTaGRs~kd---~~lm~EL~~~lk~-~~PdevlLVLsATtk--~~d~~---~i~~~F~~---~~idglI~TKLDE 389 (436)
T PRK11889 322 DYILIDTAGKNYRA---SETVEEMIETMGQ-VEPDYICLTLSASMK--SKDMI---EIITNFKD---IHIDGIVFTKFDE 389 (436)
T ss_pred CEEEEeCccccCcC---HHHHHHHHHHHhh-cCCCeEEEEECCccC--hHHHH---HHHHHhcC---CCCCEEEEEcccC
Confidence 79999999985422 11111 22222 224677899998643 23433 33444432 2334678999997
Q ss_pred CChHHHHHHHHHHHHhcCCceecccccccHHH
Q 012884 379 PEARDRLQSLTEEILKIGCDKVTSETELSSED 410 (454)
Q Consensus 379 ~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e 410 (454)
...-- .+-......+.+.........+-+
T Consensus 390 T~k~G---~iLni~~~~~lPIsyit~GQ~VPe 418 (436)
T PRK11889 390 TASSG---ELLKIPAVSSAPIVLMTDGQDVKK 418 (436)
T ss_pred CCCcc---HHHHHHHHHCcCEEEEeCCCCCCc
Confidence 65422 223333334444444334333333
No 402
>PRK01889 GTPase RsgA; Reviewed
Probab=96.49 E-value=0.014 Score=60.57 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=49.5
Q ss_pred cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcCC--ceeccccc
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGC--DKVTSETE 405 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~~g~--~~~sa~~~ 405 (454)
+.++|.+++|+++........++.+...++. .+.+.+||+||+||.+..+ ..+.+... ..++ ..+++...
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCC
Confidence 4679999999999643333333333333332 3678899999999986432 22333322 2333 44567777
Q ss_pred ccHHHHHHHHH
Q 012884 406 LSSEDAVKSLS 416 (454)
Q Consensus 406 ~~~~e~~~~l~ 416 (454)
.++.+....+.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 78777776664
No 403
>PRK14974 cell division protein FtsY; Provisional
Probab=96.47 E-value=0.016 Score=59.63 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=49.8
Q ss_pred ccEEEecCCCCccccccCCcccc---hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~---~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..++|+||||..... ..+.. .+.+. -..|.+++|+|+..+. +.++.+...... -..--+|+||+|
T Consensus 223 ~DvVLIDTaGr~~~~---~~lm~eL~~i~~~-~~pd~~iLVl~a~~g~--d~~~~a~~f~~~------~~~~giIlTKlD 290 (336)
T PRK14974 223 IDVVLIDTAGRMHTD---ANLMDELKKIVRV-TKPDLVIFVGDALAGN--DAVEQAREFNEA------VGIDGVILTKVD 290 (336)
T ss_pred CCEEEEECCCccCCc---HHHHHHHHHHHHh-hCCceEEEeeccccch--hHHHHHHHHHhc------CCCCEEEEeeec
Confidence 369999999986421 11111 12222 2468889999997642 333333222221 234578899999
Q ss_pred CCChHHHHHHHHHHHHhcCCceecccccccH
Q 012884 378 LPEARDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 378 l~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
....--. +-......+.+.....+...+
T Consensus 291 ~~~~~G~---~ls~~~~~~~Pi~~i~~Gq~v 318 (336)
T PRK14974 291 ADAKGGA---ALSIAYVIGKPILFLGVGQGY 318 (336)
T ss_pred CCCCccH---HHHHHHHHCcCEEEEeCCCCh
Confidence 8653222 222223345555555555555
No 404
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.0031 Score=65.66 Aligned_cols=69 Identities=13% Similarity=-0.001 Sum_probs=37.9
Q ss_pred ccEEEecCCCCccccccCCcccc---hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~---~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..++|+||||..... ..+-. .+...+ ..+.+++|+++.. ...+.. +.++.|. .-..--+|+||.|
T Consensus 286 ~D~VLIDTAGr~~~d---~~~l~EL~~l~~~~-~p~~~~LVLsag~--~~~d~~---~i~~~f~---~l~i~glI~TKLD 353 (407)
T PRK12726 286 VDHILIDTVGRNYLA---EESVSEISAYTDVV-HPDLTCFTFSSGM--KSADVM---TILPKLA---EIPIDGFIITKMD 353 (407)
T ss_pred CCEEEEECCCCCccC---HHHHHHHHHHhhcc-CCceEEEECCCcc--cHHHHH---HHHHhcC---cCCCCEEEEEccc
Confidence 378999999985321 11111 122222 3467788887743 233333 3344443 1234567899999
Q ss_pred CCCh
Q 012884 378 LPEA 381 (454)
Q Consensus 378 l~~~ 381 (454)
-...
T Consensus 354 ET~~ 357 (407)
T PRK12726 354 ETTR 357 (407)
T ss_pred CCCC
Confidence 7653
No 405
>PRK12288 GTPase RsgA; Reviewed
Probab=96.32 E-value=0.027 Score=58.24 Aligned_cols=83 Identities=23% Similarity=0.153 Sum_probs=56.4
Q ss_pred ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--HHHHHHHHHHhcCC--ceeccccc
Q 012884 330 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGC--DKVTSETE 405 (454)
Q Consensus 330 ~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e--~~~~l~~~l~~~g~--~~~sa~~~ 405 (454)
.++|.+++|++.........+..+...+. ..++|.+||+||+||.+..+ ..+++.+.+...++ ..+++...
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE-----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 56899999999875555555554443333 24689999999999986432 23444455555554 45677788
Q ss_pred ccHHHHHHHHHh
Q 012884 406 LSSEDAVKSLST 417 (454)
Q Consensus 406 ~~~~e~~~~l~~ 417 (454)
.++.+.++.+..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 889888887754
No 406
>PRK13796 GTPase YqeH; Provisional
Probab=96.31 E-value=0.011 Score=61.55 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=55.1
Q ss_pred hhccccccc-EEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHH-HHHHHhcCC--
Q 012884 325 FLRHLRRTR-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL-TEEILKIGC-- 397 (454)
Q Consensus 325 fl~~i~~ad-vll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~---e~~~~l-~~~l~~~g~-- 397 (454)
.++++...+ ++++|+|+.+.. .. +..++..+. .++|+++|+||+||.... +..+++ .......++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~--~s---~~~~L~~~~---~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN--GS---WIPGLHRFV---GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC--Cc---hhHHHHHHh---CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 566777666 999999998632 11 223444332 368999999999997532 222322 222334443
Q ss_pred ---ceecccccccHHHHHHHHHhh
Q 012884 398 ---DKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 398 ---~~~sa~~~~~~~e~~~~l~~~ 418 (454)
..+++....++.+.++.+...
T Consensus 134 ~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 134 VDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457888888999988887543
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.0035 Score=66.11 Aligned_cols=95 Identities=15% Similarity=0.041 Sum_probs=48.3
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccc--cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~--~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..++|+||||........-.--..+++.+. ...-.++|+|++.. .+++. +.+..|. .-.+-=+|++|.|-
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~---~~~~~f~---~~~~~glIlTKLDE 371 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTL---TVLKAYE---SLNYRRILLTKLDE 371 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHH---HHHHHhc---CCCCCEEEEEcccC
Confidence 378999999985432111000112333332 23467899999865 23333 3344442 12345678999997
Q ss_pred CChHHHHHHHHHHHHhcCCceecccccc
Q 012884 379 PEARDRLQSLTEEILKIGCDKVTSETEL 406 (454)
Q Consensus 379 ~~~~e~~~~l~~~l~~~g~~~~sa~~~~ 406 (454)
...-- .+-......+.+........
T Consensus 372 t~~~G---~il~i~~~~~lPI~ylt~GQ 396 (432)
T PRK12724 372 ADFLG---SFLELADTYSKSFTYLSVGQ 396 (432)
T ss_pred CCCcc---HHHHHHHHHCCCEEEEecCC
Confidence 65322 23333334444444433333
No 408
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.17 E-value=0.029 Score=47.69 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=57.4
Q ss_pred cCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcccccc
Q 012884 253 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRT 332 (454)
Q Consensus 253 G~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~a 332 (454)
+..++||||+-..|..+-.....+ .+ ..++.+.. ....++|+|||+.... .....+..|
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~--~~-----~l~d~d~~-----~~~D~IIiDtpp~~~~---------~~~~~l~~a 65 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGR--RV-----LLVDLDLQ-----FGDDYVVVDLGRSLDE---------VSLAALDQA 65 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCC--cE-----EEEECCCC-----CCCCEEEEeCCCCcCH---------HHHHHHHHc
Confidence 568999999877665432111011 11 12222221 1236899999997432 344567789
Q ss_pred cEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 012884 333 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 375 (454)
Q Consensus 333 dvll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK 375 (454)
|.+++|++.+.. .......+.+.++..... ....+.+|+|+
T Consensus 66 D~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 66 DRVFLVTQQDLP-SIRNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred CeEEEEecCChH-HHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 999999998753 344445555555543311 13457788886
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.0043 Score=69.76 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred ccEEEecCCCCccccccCCcccc--hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGR--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~--~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..++|+||||..... ..+.. ..+......+-.++|+|++.. .+++. +.++.|.....-.+-=+|++|.|-
T Consensus 264 ~D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~---~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 264 KHLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLN---EVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CCEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHH---HHHHHHhhcccCCCCEEEEeccCC
Confidence 369999999964321 11111 112222345567999999852 33333 344444321101234678999997
Q ss_pred CCh
Q 012884 379 PEA 381 (454)
Q Consensus 379 ~~~ 381 (454)
...
T Consensus 336 t~~ 338 (767)
T PRK14723 336 ATH 338 (767)
T ss_pred CCC
Confidence 653
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.023 Score=59.59 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=50.1
Q ss_pred ccEEEecCCCCccccccCCccc--chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg--~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..++|+||||...... ..+. ..++..+..-.-.++|+|++.. ..++. +.+..|. .-.+-=+|++|.|-
T Consensus 255 ~DlVLIDTaGr~~~~~--~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~---~~~~~~~---~~~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPKDF--MKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK---EIFHQFS---PFSYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCccCH--HHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH---HHHHHhc---CCCCCEEEEEeccC
Confidence 3799999999854211 0111 1233333322357899999875 34444 3444443 11345688999997
Q ss_pred CChHHHHHHHHHHHHhcCCceecccccccH
Q 012884 379 PEARDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 379 ~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
...-- .+-......+.+.........+
T Consensus 325 t~~~G---~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 325 TTCVG---NLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred CCcch---HHHHHHHHHCCCEEEEeCCCCC
Confidence 65432 2233333444444444444444
No 411
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.10 E-value=0.01 Score=61.11 Aligned_cols=85 Identities=25% Similarity=0.284 Sum_probs=49.0
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
-++|+|.+|+.+.-+... + -.-.|+ .|...++|-+..+..-...+-|--.|. ...|+.+|++|+|+-.+
T Consensus 220 viTFIDLAGHEkYLKTTv-F--GMTGH~--PDf~MLMiGaNaGIiGmTKEHLgLALa------L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTV-F--GMTGHM--PDFTMLMIGANAGIIGMTKEHLGLALA------LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eEEEEeccchhhhhheee-e--ccccCC--CCceEEEecccccceeccHHhhhhhhh------hcCcEEEEEEeeccCcH
Confidence 388999999854321100 0 112233 578888888877543222333333343 47999999999999876
Q ss_pred H---HHHHHHHHHHHhcCC
Q 012884 382 R---DRLQSLTEEILKIGC 397 (454)
Q Consensus 382 ~---e~~~~l~~~l~~~g~ 397 (454)
. |.++.+...++.-|+
T Consensus 289 NiLqEtmKll~rllkS~gc 307 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGC 307 (641)
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 2 333334444444343
No 412
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.021 Score=56.87 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=67.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCcc----CCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc--
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-- 321 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia----~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l-- 321 (454)
.|-.||-++.|||||+..|.+.+..-. .+|..-+.++...+.- . ...-+++|+||.|+-+.....+..
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE----s--nvrlKLtiv~tvGfGDQinK~~Syk~ 117 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE----S--NVRLKLTIVDTVGFGDQINKEDSYKP 117 (406)
T ss_pred EEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh----c--CeeEEEEEEeecccccccCcccccch
Confidence 445689999999999999988654321 1222222221111110 0 112379999999995432111111
Q ss_pred -----cchhhc---------------ccccccEEEEEEeCCCCCCHhhHHHH-HHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 322 -----GRNFLR---------------HLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 322 -----g~~fl~---------------~i~~advll~ViDas~~~~~~d~~~l-~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..+|.. |=.|.+++||.|..+.- ....+..+ ...|. ....+|-|+-|+|...
T Consensus 118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld------skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD------SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh------hhhhhHHHHHHhhhhh
Confidence 111211 22467889999988752 23322221 12233 3456677889999887
Q ss_pred hHH
Q 012884 381 ARD 383 (454)
Q Consensus 381 ~~e 383 (454)
..+
T Consensus 191 K~e 193 (406)
T KOG3859|consen 191 KEE 193 (406)
T ss_pred HHH
Confidence 544
No 413
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.06 E-value=0.0043 Score=55.35 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=37.0
Q ss_pred cccccCCCCCHHHHHHHHHcCCC-C-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP-D-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 312 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~-~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii 312 (454)
|+++|.+++|||||++.|...-+ . ....+.||+.|..+.... ..+.++|...+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g----------~~~~~v~~~~~~ 57 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDG----------VDYHFVSKEEFE 57 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCC----------ceeEEeCHHHHH
Confidence 46899999999999999997633 1 244566888776665432 245666654443
No 414
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.05 E-value=0.013 Score=60.63 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=52.6
Q ss_pred cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHH-HHHHHHhcCC-----ce
Q 012884 329 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQS-LTEEILKIGC-----DK 399 (454)
Q Consensus 329 i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~---e~~~~-l~~~l~~~g~-----~~ 399 (454)
.+.++++++|+|+.+.... |..++..+. .++|+++|+||+|+.... +...+ +.+.+...++ ..
T Consensus 61 ~~~~~~Il~VvD~~d~~~s-----~~~~l~~~~---~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 61 GDSNALIVYVVDIFDFEGS-----LIPELKRFV---GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred ccCCcEEEEEEECcCCCCC-----ccHHHHHHh---CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 4678999999999764311 122333321 268999999999997532 22222 2233444553 45
Q ss_pred ecccccccHHHHHHHHHh
Q 012884 400 VTSETELSSEDAVKSLST 417 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~ 417 (454)
+++....++.+.+..+..
T Consensus 133 vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKK 150 (360)
T ss_pred ecCCCCCCHHHHHHHHHH
Confidence 788899999999888854
No 415
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.01 E-value=0.062 Score=57.70 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=33.6
Q ss_pred CCCEEEEEeCCCCCCh--------HHHHHHHHHHHHh----cC--CceecccccccHHHHHHHHHhhc
Q 012884 366 ERPFIVVLNKIDLPEA--------RDRLQSLTEEILK----IG--CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 366 ~kp~IvV~NK~Dl~~~--------~e~~~~l~~~l~~----~g--~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.|++||++|+|.... ++.++-++..++. .| +..++...+.++....+++...+
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 5899999999997542 2334444555544 33 34456666767766666665544
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.99 E-value=0.028 Score=58.78 Aligned_cols=148 Identities=12% Similarity=0.086 Sum_probs=73.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC--C-ccCCCceeeecc-ceeee----------CC--CCCCccc--------ccccE
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP--D-IADYPFTTLMPN-LGRLD----------GD--PTLGAEK--------YSSEA 303 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~--~-Ia~~pfTT~~p~-~g~v~----------~~--~~~~~~~--------~~~~i 303 (454)
-|+|||++||||||-|-.|...-. . -....+.|.|.. .|.++ .+ -...... -...+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 478999999999999887753211 0 012233443321 11000 00 0000000 02369
Q ss_pred EEecCCCCccccccCCcccc---hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 304 TLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 304 ~liDTPGii~~a~~~~~lg~---~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
+|+||.|.-... ..... .+..+- ...-..+|++++.. .+|++.+ ++.|.. -..--++++|+|-..
T Consensus 285 ILVDTaGrs~~D---~~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei---~~~f~~---~~i~~~I~TKlDET~ 352 (407)
T COG1419 285 ILVDTAGRSQYD---KEKIEELKELIDVS-HSIEVYLVLSATTK--YEDLKEI---IKQFSL---FPIDGLIFTKLDETT 352 (407)
T ss_pred EEEeCCCCCccC---HHHHHHHHHHHhcc-ccceEEEEEecCcc--hHHHHHH---HHHhcc---CCcceeEEEcccccC
Confidence 999999974321 11111 233333 34455778888753 4555544 444431 112346799999765
Q ss_pred hHHHHHHHHHHHHhcCCceecccccccHHH
Q 012884 381 ARDRLQSLTEEILKIGCDKVTSETELSSED 410 (454)
Q Consensus 381 ~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e 410 (454)
.- -.+...+...+.+......+..+-+
T Consensus 353 s~---G~~~s~~~e~~~PV~YvT~GQ~VPe 379 (407)
T COG1419 353 SL---GNLFSLMYETRLPVSYVTNGQRVPE 379 (407)
T ss_pred ch---hHHHHHHHHhCCCeEEEeCCCCCCc
Confidence 42 3344444445554444444433333
No 417
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.99 E-value=0.013 Score=62.56 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=49.9
Q ss_pred chhhcccccccEEEEEEeCCCCCCH--hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCcee
Q 012884 323 RNFLRHLRRTRLLVHVIDAAAENPV--NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKV 400 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~~~~~--~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~ 400 (454)
++.++.++++|+||.+||+..+.-+ .+++....+.. ..|..++++||+||... +....+++++...++..+
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d------~~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~ni~~v 238 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD------PSKANVLLVNKADLLPP-EQRVAWAEYFRQNNIPVV 238 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc------cccceEEEEehhhcCCH-HHHHHHHHHHHhcCceEE
Confidence 3577889999999999999886432 23332222222 34888999999999986 456778888876655443
No 418
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0074 Score=60.64 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=65.6
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCC----CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----NPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 376 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~----~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~ 376 (454)
+.+.|+|.||+.- |-...|.-..-.|..+++|-+... .+.+.+..+ +.++ -+-++++-||+
T Consensus 125 RHVSfVDCPGHDi-------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM~-------LkhiiilQNKi 189 (466)
T KOG0466|consen 125 RHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIMK-------LKHIIILQNKI 189 (466)
T ss_pred EEEEeccCCchHH-------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHhh-------hceEEEEechh
Confidence 4588999999831 222344444446778888877652 233333322 2222 36689999999
Q ss_pred CCCChHHH---HHHHHHHHHh-----cCCceecccccccHHHHHHHHHhhcC
Q 012884 377 DLPEARDR---LQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 377 Dl~~~~e~---~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
||..+.+. .++++.++.. ..+.+.++....++....++++...-
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 99976443 4444444443 24556777788888888888886554
No 419
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.98 E-value=0.029 Score=44.95 Aligned_cols=71 Identities=23% Similarity=0.145 Sum_probs=44.8
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 328 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~ 328 (454)
+.+.|.+++||||+...|...-.. ..+... .+ +.++++|+|+....... .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~-------~~------------~d~iivD~~~~~~~~~~------~~~~~ 55 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVL-------LI------------DDYVLIDTPPGLGLLVL------LCLLA 55 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEE-------EE------------CCEEEEeCCCCccchhh------hhhhh
Confidence 346688999999999888654211 111111 11 15899999998643210 01345
Q ss_pred cccccEEEEEEeCCCCC
Q 012884 329 LRRTRLLVHVIDAAAEN 345 (454)
Q Consensus 329 i~~advll~ViDas~~~ 345 (454)
+..+|.++++++.....
T Consensus 56 ~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 56 LLAADLVIIVTTPEALA 72 (99)
T ss_pred hhhCCEEEEecCCchhh
Confidence 66799999999987644
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.92 E-value=0.025 Score=60.85 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=47.3
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++++||+|....... ......++..+....-.++|+|++.. .. .+.+.++.|.. ....-+|+||+|-...
T Consensus 336 d~VLIDTaGr~~~d~~-~~e~~~~l~~~~~p~e~~LVLdAt~~--~~---~l~~i~~~f~~---~~~~g~IlTKlDet~~ 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDRM-VSEQIAMLHGAGAPVKRLLLLNATSH--GD---TLNEVVQAYRG---PGLAGCILTKLDEAAS 406 (484)
T ss_pred CeEEeCCCCcChhhHH-HHHHHHHHhccCCCCeeEEEEeCCCc--HH---HHHHHHHHhcc---CCCCEEEEeCCCCccc
Confidence 6899999997432110 00011122222212236899999753 23 33344555542 2344577999997643
Q ss_pred HHHHHHHHHHHHhcCCceecccccccH
Q 012884 382 RDRLQSLTEEILKIGCDKVTSETELSS 408 (454)
Q Consensus 382 ~e~~~~l~~~l~~~g~~~~sa~~~~~~ 408 (454)
- -.+.......+++.........+
T Consensus 407 ~---G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 407 L---GGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred c---hHHHHHHHHHCCCeEEEecCCCC
Confidence 2 22333344444444444444444
No 421
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.91 E-value=0.0073 Score=56.80 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=34.4
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDG 290 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~ 290 (454)
|.|+|.+|||||||+++|....+.+ ...+.||+.|..+.++.
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G 49 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEG 49 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCC
Confidence 4678999999999999999876544 55688999988887654
No 422
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=95.86 E-value=0.083 Score=53.75 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=33.9
Q ss_pred CCCCEEEEEeCCCCCCh--------HHHHHHHHHHHHhc----C--CceecccccccHHHHHHHHHh
Q 012884 365 LERPFIVVLNKIDLPEA--------RDRLQSLTEEILKI----G--CDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 365 ~~kp~IvV~NK~Dl~~~--------~e~~~~l~~~l~~~----g--~~~~sa~~~~~~~e~~~~l~~ 417 (454)
.+.|++||++|||...- .+.++-++..++++ | +..+++....++.-.-+++..
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 37899999999998431 23445555555543 3 345677766676666665554
No 423
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.76 E-value=0.012 Score=54.11 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=31.1
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 288 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v 288 (454)
|+++|.++||||||++.|.+..+.+ .....||+.|..+.+
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~ 44 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEV 44 (180)
T ss_pred EEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCc
Confidence 5789999999999999999865543 444667887776654
No 424
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.74 E-value=0.027 Score=59.93 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=39.0
Q ss_pred cEEEecCCCCccccccCCcccc--hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGR--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~--~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.++|+||||.... +..+-. ..+..+..+|.+++|+|++.+ .+.+.. ++.|.... ...-+|+||+|-.
T Consensus 177 DvVIIDTAGr~~~---d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~----a~~F~~~l--~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHAL---EEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQ----AKAFHEAV--GIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccc---hHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHH----HHHHHhcC--CCCEEEEecccCC
Confidence 7999999997432 111111 122334468899999999775 222222 33332111 2345788999965
Q ss_pred C
Q 012884 380 E 380 (454)
Q Consensus 380 ~ 380 (454)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
No 425
>PRK13695 putative NTPase; Provisional
Probab=95.70 E-value=0.033 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.0
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
+|+++|.+++|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999997643
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.63 E-value=0.02 Score=57.10 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=51.6
Q ss_pred ccEEEecCCCCccccccCCcccc---hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~---~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..++|+||||..... ..+-. .+++.. ..+.+++|+|++.. .++.. +.++.|.. -.+-=+|++|.|
T Consensus 155 ~D~ViIDt~Gr~~~~---~~~l~el~~~~~~~-~~~~~~LVl~a~~~--~~d~~---~~~~~f~~---~~~~~~I~TKlD 222 (270)
T PRK06731 155 VDYILIDTAGKNYRA---SETVEEMIETMGQV-EPDYICLTLSASMK--SKDMI---EIITNFKD---IHIDGIVFTKFD 222 (270)
T ss_pred CCEEEEECCCCCcCC---HHHHHHHHHHHhhh-CCCeEEEEEcCccC--HHHHH---HHHHHhCC---CCCCEEEEEeec
Confidence 379999999985321 11111 233333 34678999998753 23333 33445542 244567899999
Q ss_pred CCChHHHHHHHHHHHHhcCCceecccccccHHHHH
Q 012884 378 LPEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 412 (454)
Q Consensus 378 l~~~~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~ 412 (454)
-...-- .+-......+.+.........+-+.+
T Consensus 223 et~~~G---~~l~~~~~~~~Pi~~it~Gq~vp~di 254 (270)
T PRK06731 223 ETASSG---ELLKIPAVSSAPIVLMTDGQDVKKNI 254 (270)
T ss_pred CCCCcc---HHHHHHHHHCcCEEEEeCCCCCCcch
Confidence 765422 22333334445544444444443333
No 427
>PRK10867 signal recognition particle protein; Provisional
Probab=95.52 E-value=0.03 Score=59.50 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=35.7
Q ss_pred ccEEEecCCCCccccccCCcccc---hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~---~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..++|+||||.... +..+-. .+.+. -..+-+++|+|+..+ .+.+... +.|... . ...-+|+||+|
T Consensus 184 ~DvVIIDTaGrl~~---d~~lm~eL~~i~~~-v~p~evllVlda~~g--q~av~~a----~~F~~~-~-~i~giIlTKlD 251 (433)
T PRK10867 184 YDVVIVDTAGRLHI---DEELMDELKAIKAA-VNPDEILLVVDAMTG--QDAVNTA----KAFNEA-L-GLTGVILTKLD 251 (433)
T ss_pred CCEEEEeCCCCccc---CHHHHHHHHHHHHh-hCCCeEEEEEecccH--HHHHHHH----HHHHhh-C-CCCEEEEeCcc
Confidence 36899999997431 111111 12222 245677999998653 2222222 222211 1 22457789999
Q ss_pred CCC
Q 012884 378 LPE 380 (454)
Q Consensus 378 l~~ 380 (454)
-..
T Consensus 252 ~~~ 254 (433)
T PRK10867 252 GDA 254 (433)
T ss_pred Ccc
Confidence 643
No 428
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.48 E-value=0.052 Score=52.85 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=57.9
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.|+|+||+|.-.. ..--.|.++|++|.=.-.+..+..+..+.+....+.........|.-|+.|++.-...
T Consensus 85 d~VlvDleG~as~---------~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~ 155 (231)
T PF07015_consen 85 DFVLVDLEGGASE---------LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL 155 (231)
T ss_pred CEEEEeCCCCCch---------hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh
Confidence 6899999997321 1123456799988877666555444444433322222212346899999999984432
Q ss_pred HHHHHHHHHHHHhcCCceecccccccHHHHHH
Q 012884 382 RDRLQSLTEEILKIGCDKVTSETELSSEDAVK 413 (454)
Q Consensus 382 ~e~~~~l~~~l~~~g~~~~sa~~~~~~~e~~~ 413 (454)
......+.+.+..+.+..+.......+.+.+.
T Consensus 156 ~~~~~~~~e~~~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 156 TRAQRIISEQLESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred hHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 22223334455555555555555555544443
No 429
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.32 E-value=0.017 Score=49.51 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.8
Q ss_pred ccccCCCCCHHHHHHHHHcC
Q 012884 250 TDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~ 269 (454)
-+.|.||+|||+|++.+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHH
T ss_pred EEECcCCCCeeHHHHHHHhh
Confidence 47899999999999999864
No 430
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.24 E-value=0.053 Score=45.21 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=42.8
Q ss_pred cccc-CCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhcc
Q 012884 250 TDKG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 328 (454)
Q Consensus 250 glVG-~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~ 328 (454)
+++| ..|+||||+...|...-.. .. .....++.+.. | .++++|+|+.... .+...
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~-~~-------~~vl~~d~d~~-----~--d~viiD~p~~~~~---------~~~~~ 58 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALAR-RG-------KRVLLIDLDPQ-----Y--DYIIIDTPPSLGL---------LTRNA 58 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHh-CC-------CcEEEEeCCCC-----C--CEEEEeCcCCCCH---------HHHHH
Confidence 4444 6799999987766432111 11 11112222221 2 6899999997432 34466
Q ss_pred cccccEEEEEEeCCC
Q 012884 329 LRRTRLLVHVIDAAA 343 (454)
Q Consensus 329 i~~advll~ViDas~ 343 (454)
+..||.++++++.+.
T Consensus 59 l~~ad~viv~~~~~~ 73 (104)
T cd02042 59 LAAADLVLIPVQPSP 73 (104)
T ss_pred HHHCCEEEEeccCCH
Confidence 777999999999865
No 431
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.012 Score=55.30 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=33.9
Q ss_pred ccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeC
Q 012884 250 TDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDG 290 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~ 290 (454)
.+.|+.|||||||+++|.... .+ -+...||+.|..|.+++
T Consensus 8 vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G 48 (191)
T COG0194 8 VLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDG 48 (191)
T ss_pred EEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCC
Confidence 467999999999999999877 55 55778999999998765
No 432
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.064 Score=52.52 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=74.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCC-CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~-~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.|-+.|.--+||||+-...-..- |.-.-+--.|-.+....+... + ..+.+||.||+..... .. ..+.
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~s-------f-inf~v~dfPGQ~~~Fd--~s--~D~e 96 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNS-------F-INFQVWDFPGQMDFFD--PS--FDYE 96 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhh-------h-cceEEeecCCccccCC--Cc--cCHH
Confidence 36688999999999877654321 111112222222222222110 1 3689999999976421 11 1233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCChH-------HHHHHHHHHHHhcCCc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEAR-------DRLQSLTEEILKIGCD 398 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~-~~~~~~~~kp~IvV~NK~Dl~~~~-------e~~~~l~~~l~~~g~~ 398 (454)
.-.+.+-+++||||+.+. -.+.+..|...+. .|..+ .+..+=+.+-|.|-...+ +..++..+.+...|..
T Consensus 97 ~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvN-p~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle 174 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVN-PNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLE 174 (347)
T ss_pred HHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecC-CCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhc
Confidence 445779999999999642 1222222222222 23322 356677889999976542 2233334455555554
Q ss_pred e
Q 012884 399 K 399 (454)
Q Consensus 399 ~ 399 (454)
.
T Consensus 175 ~ 175 (347)
T KOG3887|consen 175 K 175 (347)
T ss_pred c
Confidence 3
No 433
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.92 E-value=0.37 Score=50.96 Aligned_cols=157 Identities=21% Similarity=0.232 Sum_probs=82.8
Q ss_pred cccccCCCCCHHHHHHHHHcC------------CCCc----cCCCceee---ecc----cee-eeCCCCCCcccccccEE
Q 012884 249 DTDKGLPNAGKSTLLAAITHA------------KPDI----ADYPFTTL---MPN----LGR-LDGDPTLGAEKYSSEAT 304 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~------------~~~I----a~~pfTT~---~p~----~g~-v~~~~~~~~~~~~~~i~ 304 (454)
+|+||+--+|||||+.++-.. .+.. .+-++.|+ .|. ..+ +..+. ...-++.
T Consensus 20 iGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~-----~~~~kVR 94 (492)
T PF09547_consen 20 IGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDD-----GIKVKVR 94 (492)
T ss_pred EEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecC-----CceEEEE
Confidence 689999999999999999432 1111 11223332 221 111 22211 1123788
Q ss_pred EecCCCCccccccC------Ccccc--h------h--------hccccc--ccEEEEEEeCCCC-CCHh----hHHHHHH
Q 012884 305 LADLPGLIEGAHLG------KGLGR--N------F--------LRHLRR--TRLLVHVIDAAAE-NPVN----DYRTVKE 355 (454)
Q Consensus 305 liDTPGii~~a~~~------~~lg~--~------f--------l~~i~~--advll~ViDas~~-~~~~----d~~~l~~ 355 (454)
++|+-|+.-....+ ..+-+ . | .+-|.. +=.+|+--|.|-. .+.+ .-+...+
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999987432211 11111 0 1 122322 2234444565532 2222 3345567
Q ss_pred HHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-hcCCceecccccccHHHHHHHHHh
Q 012884 356 ELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 356 eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-~~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
||+. .+||+||++|-.+-... ...++++.+. +.+.+..+......-++.+..+.+
T Consensus 175 ELk~-----igKPFvillNs~~P~s~--et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~ 230 (492)
T PF09547_consen 175 ELKE-----IGKPFVILLNSTKPYSE--ETQELAEELEEKYDVPVLPVNCEQLREEDITRILE 230 (492)
T ss_pred HHHH-----hCCCEEEEEeCCCCCCH--HHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHH
Confidence 7875 47999999999985432 3455555554 457776666655555555554443
No 434
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.66 E-value=0.029 Score=53.39 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=30.3
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLD 289 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~ 289 (454)
|.|+|.++||||||+++|....... -..+.||+.+..+...
T Consensus 16 ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~ 57 (206)
T PRK14738 16 VVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEID 57 (206)
T ss_pred EEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCC
Confidence 4678999999999999998654434 5566788766555443
No 435
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.59 E-value=0.033 Score=52.35 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=30.4
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 288 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v 288 (454)
|+++|.+++|||||++.|.+..+.+ ...+.||+.|..+.+
T Consensus 8 i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~ 48 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEV 48 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCc
Confidence 6899999999999999998865432 344567777766654
No 436
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.45 E-value=0.15 Score=54.24 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=36.8
Q ss_pred cEEEecCCCCccccccCCcccc--hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGR--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~--~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.++|+||||.... +..+-. .-+...-..+-+++|+|+..+ .+..... .+... . . ...=+|+||+|-.
T Consensus 184 DvVIIDTaGr~~~---d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a-~~f~~---~-v-~i~giIlTKlD~~ 252 (428)
T TIGR00959 184 DVVIVDTAGRLQI---DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTA-KTFNE---R-L-GLTGVVLTKLDGD 252 (428)
T ss_pred CEEEEeCCCcccc---CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHH-HHHHh---h-C-CCCEEEEeCccCc
Confidence 6899999997431 111111 111223347888999998753 2322322 22221 1 1 2345779999954
Q ss_pred C
Q 012884 380 E 380 (454)
Q Consensus 380 ~ 380 (454)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
No 437
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.02 E-value=0.082 Score=54.04 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=53.5
Q ss_pred EEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH
Q 012884 303 ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 382 (454)
Q Consensus 303 i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~ 382 (454)
..+-+.||+...+ -+.+.+.+..+|+++.|+|+.++....... +..+. .+++.++|+||+||.+.
T Consensus 12 ~~i~~~~g~~~k~------~~~~~~~~~~~d~vvevvDar~P~~s~~~~-----l~~~v---~~k~~i~vlNK~DL~~~- 76 (322)
T COG1161 12 NKIQWFPGHMKKA------KRQLKEVLKSVDVVVEVVDARDPLGTRNPE-----LERIV---KEKPKLLVLNKADLAPK- 76 (322)
T ss_pred ccccCCCCchHHH------HHHHHHhcccCCEEEEEEeccccccccCcc-----HHHHH---ccCCcEEEEehhhcCCH-
Confidence 3455668886543 234566778899999999998865443322 22221 36777999999999986
Q ss_pred HHHHHHHHHHHhc
Q 012884 383 DRLQSLTEEILKI 395 (454)
Q Consensus 383 e~~~~l~~~l~~~ 395 (454)
...+.+.+.+.+.
T Consensus 77 ~~~~~W~~~~~~~ 89 (322)
T COG1161 77 EVTKKWKKYFKKE 89 (322)
T ss_pred HHHHHHHHHHHhc
Confidence 4467777777766
No 438
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.98 E-value=0.14 Score=43.53 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
+.++|.||+|||+|++.+.+.
T Consensus 22 v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 22 LLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999865
No 439
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.84 E-value=0.032 Score=48.72 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|..|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 46899999999999999998764
No 440
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.78 E-value=0.033 Score=47.49 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.9
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|++.|.|+|||||+.+.|...
T Consensus 2 I~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 441
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.77 E-value=0.036 Score=54.39 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
|++||.+|+|||||||.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998864
No 442
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=93.70 E-value=0.19 Score=50.80 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=45.5
Q ss_pred cEEEecCCCCccccccCCcccchhhc-----ccccccEEEEEEeCCCCC----CHhhHHHHHHHHHhcCCCCCCCCEEEE
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLR-----HLRRTRLLVHVIDAAAEN----PVNDYRTVKEELRMYNPDYLERPFIVV 372 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~-----~i~~advll~ViDas~~~----~~~d~~~l~~eL~~~~~~~~~kp~IvV 372 (454)
...++.|-|+-..+.. ...|+. .=-.-|.+|-|+|+.... -..+--.+.+...+. .-.=-|+
T Consensus 147 D~IllETTGlAnPaPi----a~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi-----A~AD~II 217 (391)
T KOG2743|consen 147 DHILLETTGLANPAPI----ASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI-----ALADRII 217 (391)
T ss_pred ceEEEeccCCCCcHHH----HHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH-----hhhheee
Confidence 5789999999765432 222221 112369999999986410 000101111111111 1222578
Q ss_pred EeCCCCCChHHHHHHHHHHHHhc
Q 012884 373 LNKIDLPEARDRLQSLTEEILKI 395 (454)
Q Consensus 373 ~NK~Dl~~~~e~~~~l~~~l~~~ 395 (454)
+||.||+.. +.+..+++.+..+
T Consensus 218 ~NKtDli~~-e~~~~l~q~I~~I 239 (391)
T KOG2743|consen 218 MNKTDLVSE-EEVKKLRQRIRSI 239 (391)
T ss_pred eccccccCH-HHHHHHHHHHHHh
Confidence 999999986 4566666665543
No 443
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.60 E-value=0.038 Score=51.31 Aligned_cols=42 Identities=33% Similarity=0.384 Sum_probs=31.8
Q ss_pred cccccCCCCCHHHHHHHHHcCCCC-c-cCCCceeeeccceeeeC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDG 290 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~-I-a~~pfTT~~p~~g~v~~ 290 (454)
|.|+|.+++||+||.++|....+. . ...+.||+.|..+..+.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g 48 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDG 48 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TT
T ss_pred EEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCC
Confidence 457999999999999999887663 3 45678999888776543
No 444
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.60 E-value=0.18 Score=49.34 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=40.8
Q ss_pred ccEEEecC-CCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCC-CCEEEEEeCCCC
Q 012884 301 SEATLADL-PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDT-PGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~-kp~IvV~NK~Dl 378 (454)
..++++|| +|+ .|--.+.++.+|++|.|+|.+... ....+.+.+..+. .+ +++.+|+||+|-
T Consensus 134 ~e~VivDtEAGi----------EHfgRg~~~~vD~vivVvDpS~~s-l~taeri~~L~~e-----lg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGI----------EHFGRGTIEGVDLVIVVVDPSYKS-LRTAERIKELAEE-----LGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccch----------hhhccccccCCCEEEEEeCCcHHH-HHHHHHHHHHHHH-----hCCceEEEEEeeccc
Confidence 37899998 344 333335577899999999998531 2222233222222 35 899999999985
Q ss_pred C
Q 012884 379 P 379 (454)
Q Consensus 379 ~ 379 (454)
.
T Consensus 198 ~ 198 (255)
T COG3640 198 E 198 (255)
T ss_pred h
Confidence 4
No 445
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.041 Score=57.06 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=28.3
Q ss_pred cEEEecCCCCccccccCCcccchhhcc--cccccEEEEEEeCCCCCCHh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVN 348 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~--i~~advll~ViDas~~~~~~ 348 (454)
.++|+||.|-.. ++.+|-...+.. .-.-|-+|||+|++-+...+
T Consensus 185 dvIIvDTSGRh~---qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 185 DVIIVDTSGRHK---QEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred cEEEEeCCCchh---hhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence 699999999643 334443332221 12369999999999875443
No 446
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=92.87 E-value=0.35 Score=47.03 Aligned_cols=64 Identities=19% Similarity=0.084 Sum_probs=40.6
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHH---HHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV---KEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l---~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
.++|+||||... ......+..||.+|..+..+..+...-.+.+ .+..+.++ .+.+..+++|.++
T Consensus 85 D~iiID~pp~~~---------~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~---~~l~~~iv~~~~~ 151 (231)
T PRK13849 85 DYALADTHGGSS---------ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSEN---LAIPTAILRQRVP 151 (231)
T ss_pred CEEEEeCCCCcc---------HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEEecc
Confidence 799999999742 2345567789999998888653322222222 22222222 3567789999997
No 447
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=0.37 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-||++|.-++||||||+.|....
T Consensus 190 VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccC
Confidence 47889999999999999998764
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.78 E-value=0.07 Score=41.74 Aligned_cols=21 Identities=24% Similarity=0.242 Sum_probs=18.6
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|++.|.|++||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999864
No 449
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.73 E-value=0.063 Score=50.78 Aligned_cols=23 Identities=39% Similarity=0.271 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.|+++|..++|||||+|-+.+-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 57999999999999999998754
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.68 E-value=0.067 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.290 Sum_probs=19.7
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
|+++|.+|+|||||||.|.+-.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6899999999999999997653
No 451
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.59 E-value=0.071 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.147 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999864
No 452
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.56 E-value=0.084 Score=55.14 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=46.4
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC----------H-hhHHHHHHHHHhcCCCCCCCCEE
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP----------V-NDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~----------~-~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
.+.++|+.|+.. -.+.|..+.+.+++||||++.++-+. . +.+..+ +++.. ++-+.+.|+|
T Consensus 237 ~~~~~DvGGqr~-------eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF-~~i~~-~~~~~~~~ii 307 (389)
T PF00503_consen 237 KFRLIDVGGQRS-------ERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLF-ESICN-NPWFKNTPII 307 (389)
T ss_dssp EEEEEEETSSGG-------GGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHH-HHHHT-SGGGTTSEEE
T ss_pred ccceecCCCCch-------hhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHH-HHHHh-CcccccCceE
Confidence 679999999943 24578888999999999999875211 1 122222 22221 1223579999
Q ss_pred EEEeCCCCCC
Q 012884 371 VVLNKIDLPE 380 (454)
Q Consensus 371 vV~NK~Dl~~ 380 (454)
|++||+|+..
T Consensus 308 l~lnK~D~f~ 317 (389)
T PF00503_consen 308 LFLNKIDLFE 317 (389)
T ss_dssp EEEE-HHHHH
T ss_pred EeeecHHHHH
Confidence 9999999753
No 453
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=92.53 E-value=0.059 Score=60.12 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~ 269 (454)
++.|++||..++||||.++++.+.
T Consensus 29 lP~I~vvG~QSsGKSSvLE~lvG~ 52 (657)
T KOG0446|consen 29 LPQIVVVGGQSSGKSSVLESLVGF 52 (657)
T ss_pred CCceEEecCCCCcchhHHHHhhcc
Confidence 568899999999999999999884
No 454
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.49 E-value=0.088 Score=54.35 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=48.5
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC--Hhh--HHHHHHHHHhc-----CCCCCCCCEEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP--VND--YRTVKEELRMY-----NPDYLERPFIV 371 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~--~~d--~~~l~~eL~~~-----~~~~~~kp~Iv 371 (454)
..+.++|.+|++.. .+.|....+.+++++|+++.|+-+. .+| ...+.+.++.+ ++-..+.++|+
T Consensus 195 ~~f~~~DvGGQRse-------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSE-------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred CceEEEeCCCcHHH-------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 47999999998532 2346667789999999999987321 111 12222223222 12345799999
Q ss_pred EEeCCCCCCh
Q 012884 372 VLNKIDLPEA 381 (454)
Q Consensus 372 V~NK~Dl~~~ 381 (454)
.+||.||..+
T Consensus 268 FLNK~DLFeE 277 (354)
T KOG0082|consen 268 FLNKKDLFEE 277 (354)
T ss_pred EeecHHHHHH
Confidence 9999999753
No 455
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.45 E-value=0.075 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.192 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 456
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.44 E-value=0.076 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.205 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 457
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.42 E-value=0.076 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 36899999999999999999864
No 458
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.41 E-value=0.059 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=17.6
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
+|+|.|-|++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5789999999999999999865
No 459
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.41 E-value=0.077 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|..|+|||||++.|.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
No 460
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.40 E-value=0.073 Score=52.17 Aligned_cols=24 Identities=38% Similarity=0.252 Sum_probs=21.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-.||+||.++||||||++-|++.-
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 368999999999999999999863
No 461
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.34 E-value=0.12 Score=48.05 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=32.5
Q ss_pred cccccCCCCCHHHHHHHHHcCCC-Cc-cCCCceeeeccceeee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP-DI-ADYPFTTLMPNLGRLD 289 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~-~I-a~~pfTT~~p~~g~v~ 289 (454)
|.++|.++|||+||.+.|....+ .. ...+.||+.+..+...
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~ 47 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVN 47 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcC
Confidence 46789999999999999998765 23 5567888887776654
No 462
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.28 E-value=0.08 Score=50.23 Aligned_cols=23 Identities=35% Similarity=0.215 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999864
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.28 E-value=0.096 Score=40.66 Aligned_cols=19 Identities=47% Similarity=0.501 Sum_probs=17.0
Q ss_pred cccccCCCCCHHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~ 267 (454)
..|.|..++|||||+.++.
T Consensus 26 tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999999985
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.26 E-value=0.078 Score=49.65 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.1
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
||++|.++||||||.++|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999765
No 465
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.15 E-value=0.086 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.189 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 466
>PRK07261 topology modulation protein; Provisional
Probab=92.12 E-value=0.082 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=19.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
+|.++|.||+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 467
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.10 E-value=0.088 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.122 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 468
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.08 E-value=0.09 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.248 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|..|+|||||++.|.+.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999863
No 469
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.06 E-value=0.09 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.098 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999863
No 470
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.05 E-value=0.085 Score=50.00 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=19.2
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+++|||||+++|.+.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999864
No 471
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.02 E-value=0.09 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999864
No 472
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.00 E-value=0.093 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.107 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|+|||||++.|.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.95 E-value=0.088 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..++|||||++.|.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36899999999999999999864
No 474
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.95 E-value=0.093 Score=47.00 Aligned_cols=23 Identities=39% Similarity=0.254 Sum_probs=20.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..++|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 36899999999999999998864
No 475
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.95 E-value=0.095 Score=49.09 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|.+|+|||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999864
No 476
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.89 E-value=0.093 Score=50.72 Aligned_cols=22 Identities=41% Similarity=0.338 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|+.+|||||||..|+++-
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred EEEECCCCccHHHHHHHhhCcc
Confidence 5889999999999999999874
No 477
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.88 E-value=0.094 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999864
No 478
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.85 E-value=0.096 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.176 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 479
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.098 Score=49.51 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 480
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.84 E-value=0.098 Score=49.42 Aligned_cols=23 Identities=39% Similarity=0.248 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999864
No 481
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.84 E-value=0.098 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.055 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|..|+|||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 482
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.83 E-value=0.098 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.254 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 483
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.82 E-value=0.096 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998864
No 484
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.78 E-value=0.099 Score=44.49 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.6
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+|.|.|+||||||.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999765
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.77 E-value=0.1 Score=48.14 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999864
No 486
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.74 E-value=0.1 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=21.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~ 271 (454)
-++++|..|+|||||++.|.+..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999998643
No 487
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.74 E-value=0.1 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 488
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.73 E-value=0.1 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999864
No 489
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.73 E-value=0.1 Score=50.41 Aligned_cols=23 Identities=39% Similarity=0.283 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 36899999999999999999864
No 490
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.72 E-value=0.1 Score=47.95 Aligned_cols=21 Identities=33% Similarity=0.210 Sum_probs=18.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
+.++|.+|||||||+++|...
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999764
No 491
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.69 E-value=0.1 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 492
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.66 E-value=0.096 Score=47.01 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.8
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|+.|+|||||+..|.+.
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998764
No 493
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.62 E-value=0.11 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999864
No 494
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.61 E-value=0.1 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++++|..|+|||||++.|.+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3689999999999999999975
No 495
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.60 E-value=0.1 Score=45.60 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHcCC
Q 012884 250 TDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~~~~ 270 (454)
-++|.|+||||||...|....
T Consensus 3 i~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEESTTSSHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999998543
No 496
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.60 E-value=0.1 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.216 Sum_probs=19.5
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++++|.+|+|||||+++|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 3689999999999999999854
No 497
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.58 E-value=0.11 Score=50.92 Aligned_cols=20 Identities=40% Similarity=0.405 Sum_probs=18.9
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|++||..+|||||||.+|-+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999976
No 498
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.56 E-value=0.11 Score=47.33 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..++|||||++.|.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999864
No 499
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.46 E-value=0.11 Score=49.92 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|+|||||++.|.+..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999864
No 500
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.44 E-value=0.12 Score=48.79 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+|++|..++|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
Done!