Query 012884
Match_columns 454
No_of_seqs 386 out of 3268
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 18:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 1.5E-66 5.1E-71 528.9 23.9 311 75-420 1-329 (342)
2 1udx_A The GTP-binding protein 100.0 3.6E-59 1.2E-63 485.7 25.9 309 75-421 1-325 (416)
3 1xzp_A Probable tRNA modificat 99.9 4.7E-26 1.6E-30 240.9 -6.0 269 74-419 86-403 (482)
4 4a9a_A Ribosome-interacting GT 99.9 3E-24 1E-28 220.2 5.5 124 246-379 72-195 (376)
5 2hjg_A GTP-binding protein ENG 99.9 1.7E-22 5.7E-27 210.8 8.1 217 190-420 111-348 (436)
6 4dcu_A GTP-binding protein ENG 99.9 5E-22 1.7E-26 208.3 9.9 217 190-420 131-368 (456)
7 1mky_A Probable GTP-binding pr 99.8 1.8E-20 6.1E-25 195.6 10.9 217 190-420 110-354 (439)
8 3iev_A GTP-binding protein ERA 99.8 1.4E-19 4.9E-24 180.4 12.8 163 247-421 11-182 (308)
9 1wxq_A GTP-binding protein; st 99.8 2.4E-20 8.3E-25 192.7 7.1 113 248-360 2-141 (397)
10 1jal_A YCHF protein; nucleotid 99.8 7.9E-19 2.7E-23 179.2 11.2 110 248-357 4-132 (363)
11 1wf3_A GTP-binding protein; GT 99.8 8.3E-19 2.8E-23 174.7 10.6 162 247-420 8-172 (301)
12 2dyk_A GTP-binding protein; GT 99.8 6.9E-19 2.4E-23 155.0 8.8 157 247-418 2-159 (161)
13 1mky_A Probable GTP-binding pr 99.8 1.3E-18 4.5E-23 181.5 10.5 157 247-419 2-164 (439)
14 2dby_A GTP-binding protein; GD 99.8 1.3E-18 4.4E-23 178.1 9.7 111 247-357 2-135 (368)
15 3tw8_B RAS-related protein RAB 99.7 3.3E-18 1.1E-22 153.2 10.4 158 246-419 9-169 (181)
16 3gee_A MNME, tRNA modification 99.7 4.3E-18 1.5E-22 179.8 12.9 160 248-420 235-397 (476)
17 1g16_A RAS-related protein SEC 99.7 4.5E-18 1.5E-22 150.8 11.0 158 247-419 4-163 (170)
18 3tkl_A RAS-related protein RAB 99.7 4.4E-18 1.5E-22 155.2 10.7 160 246-420 16-178 (196)
19 2lkc_A Translation initiation 99.7 9.3E-18 3.2E-22 150.4 12.5 150 247-419 9-169 (178)
20 2gj8_A MNME, tRNA modification 99.7 4.5E-19 1.5E-23 160.7 3.1 157 248-419 6-164 (172)
21 4dhe_A Probable GTP-binding pr 99.7 4.2E-18 1.4E-22 159.2 9.8 162 246-420 29-210 (223)
22 2g6b_A RAS-related protein RAB 99.7 1.9E-17 6.4E-22 148.7 12.7 157 247-419 11-172 (180)
23 1ky3_A GTP-binding protein YPT 99.7 1.9E-17 6.3E-22 148.5 12.5 161 247-419 9-176 (182)
24 1c1y_A RAS-related protein RAP 99.7 1.2E-17 4.2E-22 147.5 11.1 156 248-418 5-164 (167)
25 4dsu_A GTPase KRAS, isoform 2B 99.7 8.3E-18 2.8E-22 151.9 10.1 158 248-420 6-165 (189)
26 2wji_A Ferrous iron transport 99.7 9.1E-18 3.1E-22 150.5 10.2 155 247-419 4-163 (165)
27 2qu8_A Putative nucleolar GTP- 99.7 6.1E-18 2.1E-22 159.8 9.4 162 247-419 30-203 (228)
28 3clv_A RAB5 protein, putative; 99.7 2.1E-17 7.3E-22 150.1 12.6 161 247-419 8-202 (208)
29 2efe_B Small GTP-binding prote 99.7 2.1E-17 7.1E-22 148.5 12.2 158 247-419 13-173 (181)
30 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.5E-17 5E-22 149.0 11.0 160 247-419 8-172 (177)
31 3iby_A Ferrous iron transport 99.7 2.1E-18 7.3E-23 167.8 5.8 154 247-418 2-164 (256)
32 1vg8_A RAS-related protein RAB 99.7 1.8E-17 6.2E-22 152.6 11.6 162 246-420 8-174 (207)
33 3q72_A GTP-binding protein RAD 99.7 8.4E-18 2.9E-22 149.0 9.0 156 247-419 3-162 (166)
34 2bcg_Y Protein YP2, GTP-bindin 99.7 1.8E-17 6.3E-22 153.1 11.6 160 246-420 8-170 (206)
35 2gf9_A RAS-related protein RAB 99.7 3.2E-17 1.1E-21 149.5 13.0 159 246-419 22-183 (189)
36 1x3s_A RAS-related protein RAB 99.7 1.6E-17 5.6E-22 151.0 11.1 160 247-420 16-177 (195)
37 3cph_A RAS-related protein SEC 99.7 1.4E-17 4.8E-22 154.0 10.7 158 247-419 21-180 (213)
38 2atx_A Small GTP binding prote 99.7 4.2E-17 1.4E-21 149.1 13.7 155 247-418 19-190 (194)
39 3t5g_A GTP-binding protein RHE 99.7 1.9E-17 6.5E-22 149.3 11.3 159 247-420 7-168 (181)
40 2il1_A RAB12; G-protein, GDP, 99.7 4.3E-18 1.5E-22 156.3 7.1 158 247-419 27-188 (192)
41 2bme_A RAB4A, RAS-related prot 99.7 1.3E-17 4.5E-22 150.7 10.1 159 246-419 10-171 (186)
42 3q85_A GTP-binding protein REM 99.7 9.6E-18 3.3E-22 149.1 8.9 160 247-419 3-165 (169)
43 1z0j_A RAB-22, RAS-related pro 99.7 2.1E-17 7.1E-22 146.5 10.9 156 247-419 7-167 (170)
44 1z08_A RAS-related protein RAB 99.7 1.5E-17 5E-22 147.8 10.0 158 247-419 7-167 (170)
45 3lxw_A GTPase IMAP family memb 99.7 2.3E-17 7.9E-22 159.2 12.1 164 247-419 22-206 (247)
46 3bwd_D RAC-like GTP-binding pr 99.7 1.3E-17 4.5E-22 150.0 9.7 156 247-419 9-179 (182)
47 1z0f_A RAB14, member RAS oncog 99.7 2E-17 6.8E-22 147.9 10.6 158 246-419 15-176 (179)
48 3reg_A RHO-like small GTPase; 99.7 2.7E-17 9.3E-22 150.6 11.7 156 247-419 24-186 (194)
49 2q3h_A RAS homolog gene family 99.7 1.7E-17 5.8E-22 152.6 10.3 156 247-419 21-193 (201)
50 1z2a_A RAS-related protein RAB 99.7 1.3E-17 4.3E-22 147.6 9.0 156 247-418 6-164 (168)
51 1u8z_A RAS-related protein RAL 99.7 1.3E-17 4.6E-22 146.9 9.1 158 247-419 5-165 (168)
52 2a5j_A RAS-related protein RAB 99.7 1.8E-17 6.3E-22 151.6 10.3 158 247-419 22-182 (191)
53 1ega_A Protein (GTP-binding pr 99.7 2.7E-17 9.3E-22 163.5 12.3 158 248-420 10-174 (301)
54 4bas_A ADP-ribosylation factor 99.7 3.9E-17 1.3E-21 149.2 12.3 156 247-419 18-187 (199)
55 2fg5_A RAB-22B, RAS-related pr 99.7 3.5E-17 1.2E-21 150.1 11.7 156 247-419 24-184 (192)
56 2h57_A ADP-ribosylation factor 99.7 2.6E-17 8.9E-22 150.2 10.9 155 247-419 22-185 (190)
57 1r2q_A RAS-related protein RAB 99.7 2.9E-17 9.9E-22 145.3 10.9 156 247-419 7-167 (170)
58 1ek0_A Protein (GTP-binding pr 99.7 1.6E-17 5.6E-22 146.9 9.1 157 248-419 5-167 (170)
59 2y8e_A RAB-protein 6, GH09086P 99.7 2.3E-17 8E-22 147.4 10.0 158 247-419 15-175 (179)
60 2fu5_C RAS-related protein RAB 99.7 9.7E-18 3.3E-22 151.5 7.5 159 246-419 8-169 (183)
61 3pqc_A Probable GTP-binding pr 99.7 6.2E-17 2.1E-21 146.9 12.8 157 246-419 23-192 (195)
62 2hup_A RAS-related protein RAB 99.7 2.7E-17 9.1E-22 152.5 10.6 159 246-419 29-191 (201)
63 2nzj_A GTP-binding protein REM 99.7 5E-17 1.7E-21 145.0 11.9 159 247-419 5-167 (175)
64 2ew1_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 152.4 11.2 159 246-419 26-187 (201)
65 2a9k_A RAS-related protein RAL 99.7 2.6E-17 8.8E-22 148.2 9.8 158 247-419 19-179 (187)
66 2hjg_A GTP-binding protein ENG 99.7 4.3E-18 1.5E-22 177.4 5.4 156 247-420 4-164 (436)
67 2hxs_A RAB-26, RAS-related pro 99.7 8.9E-18 3.1E-22 150.5 6.6 161 247-419 7-171 (178)
68 2j0v_A RAC-like GTP-binding pr 99.7 2.9E-17 1E-21 152.4 10.3 158 247-421 10-180 (212)
69 2iwr_A Centaurin gamma 1; ANK 99.7 2.4E-17 8.3E-22 148.2 9.4 153 247-419 8-167 (178)
70 1svi_A GTP-binding protein YSX 99.7 4.7E-17 1.6E-21 148.4 11.3 156 246-418 23-192 (195)
71 3cbq_A GTP-binding protein REM 99.7 1.7E-17 5.8E-22 153.5 8.4 160 247-419 24-186 (195)
72 3oes_A GTPase rhebl1; small GT 99.7 2.7E-17 9.2E-22 151.9 9.8 159 247-420 25-186 (201)
73 3kkq_A RAS-related protein M-R 99.7 5.6E-17 1.9E-21 146.4 11.6 157 247-419 19-180 (183)
74 1z06_A RAS-related protein RAB 99.7 2.5E-17 8.6E-22 150.2 9.4 159 247-418 21-185 (189)
75 2qtf_A Protein HFLX, GTP-bindi 99.7 3.7E-17 1.3E-21 167.1 11.6 160 248-419 181-352 (364)
76 1zbd_A Rabphilin-3A; G protein 99.7 3E-17 1E-21 151.1 9.8 159 246-419 8-169 (203)
77 1m2o_B GTP-binding protein SAR 99.7 6.7E-17 2.3E-21 148.5 11.8 151 247-417 24-188 (190)
78 4gzl_A RAS-related C3 botulinu 99.7 2.9E-17 9.9E-22 152.6 9.5 155 247-418 31-202 (204)
79 2bov_A RAla, RAS-related prote 99.7 4.3E-17 1.5E-21 149.7 10.5 159 247-420 15-176 (206)
80 3con_A GTPase NRAS; structural 99.7 4.9E-17 1.7E-21 147.9 10.8 158 247-419 22-181 (190)
81 2erx_A GTP-binding protein DI- 99.7 2E-17 7E-22 146.6 8.0 158 248-419 5-165 (172)
82 1mh1_A RAC1; GTP-binding, GTPa 99.7 3.5E-17 1.2E-21 147.4 9.7 156 247-419 6-178 (186)
83 3t1o_A Gliding protein MGLA; G 99.7 1.7E-16 5.9E-21 144.0 14.2 162 247-419 15-190 (198)
84 4djt_A GTP-binding nuclear pro 99.7 2.1E-17 7.1E-22 154.1 8.2 162 247-424 12-178 (218)
85 3bc1_A RAS-related protein RAB 99.7 6.5E-17 2.2E-21 146.2 11.2 165 247-419 12-183 (195)
86 1zj6_A ADP-ribosylation factor 99.7 8.2E-17 2.8E-21 146.5 11.8 153 247-419 17-176 (187)
87 2fn4_A P23, RAS-related protei 99.7 3.3E-17 1.1E-21 146.6 9.0 157 247-419 10-170 (181)
88 3i8s_A Ferrous iron transport 99.7 1.3E-17 4.5E-22 163.5 6.7 156 248-420 5-168 (274)
89 1kao_A RAP2A; GTP-binding prot 99.7 3.3E-17 1.1E-21 144.2 8.7 156 248-418 5-163 (167)
90 2oil_A CATX-8, RAS-related pro 99.7 5.7E-17 1.9E-21 148.1 10.4 159 246-419 25-186 (193)
91 1f6b_A SAR1; gtpases, N-termin 99.7 5.8E-17 2E-21 150.0 10.6 152 247-418 26-196 (198)
92 3r7w_A Gtpase1, GTP-binding pr 99.7 5.5E-17 1.9E-21 161.5 11.1 163 247-419 4-179 (307)
93 1upt_A ARL1, ADP-ribosylation 99.7 1.8E-16 6E-21 140.9 13.1 153 247-419 8-167 (171)
94 2ce2_X GTPase HRAS; signaling 99.7 6.8E-17 2.3E-21 141.8 10.2 157 248-419 5-163 (166)
95 3b1v_A Ferrous iron uptake tra 99.7 1.8E-17 6.1E-22 162.8 7.1 154 247-419 4-162 (272)
96 2o52_A RAS-related protein RAB 99.7 2.9E-17 1E-21 151.9 8.0 159 246-419 25-186 (200)
97 1r8s_A ADP-ribosylation factor 99.7 1.2E-16 4.2E-21 141.1 11.7 152 248-419 2-160 (164)
98 2h17_A ADP-ribosylation factor 99.7 9.3E-17 3.2E-21 145.6 11.1 151 247-417 22-179 (181)
99 3lxx_A GTPase IMAP family memb 99.7 3.5E-17 1.2E-21 156.1 8.5 162 247-418 30-211 (239)
100 1ksh_A ARF-like protein 2; sma 99.7 6.8E-17 2.3E-21 146.5 9.9 153 247-419 19-178 (186)
101 1m7b_A RND3/RHOE small GTP-bin 99.7 8.4E-17 2.9E-21 146.3 10.5 155 247-418 8-180 (184)
102 3cpj_B GTP-binding protein YPT 99.7 6.6E-17 2.3E-21 152.0 10.0 161 246-421 13-176 (223)
103 2gco_A H9, RHO-related GTP-bin 99.7 9.8E-17 3.4E-21 148.3 11.0 155 247-418 26-197 (201)
104 3dz8_A RAS-related protein RAB 99.7 1.3E-17 4.3E-22 152.6 4.9 159 246-419 23-184 (191)
105 2p5s_A RAS and EF-hand domain 99.7 6E-17 2E-21 149.3 9.2 159 246-419 28-195 (199)
106 2gf0_A GTP-binding protein DI- 99.7 5.5E-17 1.9E-21 148.2 8.7 161 247-421 9-171 (199)
107 3q3j_B RHO-related GTP-binding 99.7 1.3E-16 4.5E-21 149.6 11.2 156 247-419 28-201 (214)
108 2yc2_C IFT27, small RAB-relate 99.7 3.2E-17 1.1E-21 150.5 6.4 162 247-419 21-190 (208)
109 2j1l_A RHO-related GTP-binding 99.7 6.5E-17 2.2E-21 151.3 8.5 156 247-419 35-207 (214)
110 2fv8_A H6, RHO-related GTP-bin 99.7 1.1E-16 3.8E-21 148.6 9.9 156 247-419 26-198 (207)
111 1gwn_A RHO-related GTP-binding 99.7 1.3E-16 4.5E-21 148.9 10.4 155 247-418 29-201 (205)
112 3l0i_B RAS-related protein RAB 99.7 2.7E-18 9.3E-23 158.3 -1.1 159 246-419 33-194 (199)
113 3geh_A MNME, tRNA modification 99.7 2.8E-17 9.6E-22 172.9 5.9 157 248-421 226-384 (462)
114 2f7s_A C25KG, RAS-related prot 99.7 2.3E-17 7.8E-22 153.7 4.7 166 246-419 25-197 (217)
115 2atv_A RERG, RAS-like estrogen 99.7 1.6E-16 5.5E-21 145.9 10.1 156 247-419 29-189 (196)
116 3a1s_A Iron(II) transport prot 99.7 3.7E-17 1.3E-21 159.1 6.1 155 247-419 6-165 (258)
117 1zd9_A ADP-ribosylation factor 99.7 1.9E-16 6.5E-21 144.6 10.4 154 247-419 23-183 (188)
118 1moz_A ARL1, ADP-ribosylation 99.7 9.3E-17 3.2E-21 144.7 8.2 153 247-419 19-178 (183)
119 3c5c_A RAS-like protein 12; GD 99.7 1.4E-16 4.9E-21 145.7 9.5 158 247-419 22-184 (187)
120 4dkx_A RAS-related protein RAB 99.7 2E-16 6.7E-21 150.2 10.5 156 248-420 15-175 (216)
121 2wjg_A FEOB, ferrous iron tran 99.7 6.2E-17 2.1E-21 146.8 6.6 157 247-421 8-169 (188)
122 2e87_A Hypothetical protein PH 99.7 8.3E-16 2.8E-20 156.0 15.4 162 246-419 167-334 (357)
123 3lvq_E ARF-GAP with SH3 domain 99.7 3.1E-16 1.1E-20 165.4 12.4 154 247-420 323-483 (497)
124 3llu_A RAS-related GTP-binding 99.6 6.5E-16 2.2E-20 142.2 12.3 158 247-418 21-194 (196)
125 1fzq_A ADP-ribosylation factor 99.6 3.4E-16 1.2E-20 142.4 9.6 153 247-419 17-176 (181)
126 2x77_A ADP-ribosylation factor 99.6 4E-16 1.4E-20 141.9 10.0 153 247-419 23-182 (189)
127 3ihw_A Centg3; RAS, centaurin, 99.6 4.6E-16 1.6E-20 142.3 10.1 152 247-419 21-178 (184)
128 2b6h_A ADP-ribosylation factor 99.6 3.3E-16 1.1E-20 144.1 9.1 153 247-419 30-189 (192)
129 2fh5_B SR-beta, signal recogni 99.6 6.5E-16 2.2E-20 143.5 10.7 120 247-381 8-130 (214)
130 2g3y_A GTP-binding protein GEM 99.6 3.9E-16 1.3E-20 147.5 9.0 160 247-419 38-201 (211)
131 4dcu_A GTP-binding protein ENG 99.6 1.1E-16 3.8E-21 167.7 5.0 155 247-419 24-183 (456)
132 3th5_A RAS-related C3 botulinu 99.4 2.7E-17 9.2E-22 152.0 0.0 153 247-416 31-200 (204)
133 2cjw_A GTP-binding protein GEM 99.6 7.1E-16 2.4E-20 142.2 9.1 160 247-419 7-170 (192)
134 3k53_A Ferrous iron transport 99.6 3.3E-16 1.1E-20 152.7 6.7 156 247-419 4-164 (271)
135 3gj0_A GTP-binding nuclear pro 99.6 1.6E-16 5.4E-21 148.9 4.2 155 247-420 16-174 (221)
136 2xtp_A GTPase IMAP family memb 99.6 1.3E-15 4.3E-20 146.9 10.1 163 247-420 23-207 (260)
137 2ohf_A Protein OLA1, GTP-bindi 99.6 4.3E-16 1.5E-20 160.6 6.8 114 247-360 23-155 (396)
138 2cxx_A Probable GTP-binding pr 99.6 2.9E-15 9.8E-20 135.5 11.1 153 247-419 2-182 (190)
139 3o47_A ADP-ribosylation factor 99.6 1.2E-15 4.2E-20 153.4 9.5 152 248-419 167-325 (329)
140 3qq5_A Small GTP-binding prote 99.6 3.2E-16 1.1E-20 163.1 4.9 159 246-421 34-196 (423)
141 2wkq_A NPH1-1, RAS-related C3 99.6 1.3E-15 4.4E-20 150.4 8.7 156 247-419 156-328 (332)
142 3dpu_A RAB family protein; roc 99.6 1.4E-15 4.8E-20 162.3 9.2 158 247-421 42-208 (535)
143 3sjy_A Translation initiation 99.6 1.7E-14 5.7E-19 148.8 14.7 163 247-420 9-191 (403)
144 2aka_B Dynamin-1; fusion prote 99.6 6E-16 2.1E-20 151.4 3.1 167 246-417 26-249 (299)
145 3def_A T7I23.11 protein; chlor 99.6 1.1E-14 3.7E-19 141.4 10.8 122 247-380 37-165 (262)
146 3j2k_7 ERF3, eukaryotic polype 99.5 1.3E-14 4.3E-19 151.7 11.4 145 246-411 17-215 (439)
147 2zej_A Dardarin, leucine-rich 99.5 7.9E-15 2.7E-19 133.6 8.5 159 248-419 4-176 (184)
148 1wb1_A Translation elongation 99.5 2.2E-14 7.6E-19 151.6 12.4 152 247-419 20-187 (482)
149 3t5d_A Septin-7; GTP-binding p 99.5 2.5E-14 8.6E-19 139.6 11.8 162 247-419 9-202 (274)
150 1h65_A Chloroplast outer envel 99.5 1.3E-14 4.6E-19 141.2 9.6 126 247-381 40-169 (270)
151 2f9l_A RAB11B, member RAS onco 99.5 1.6E-14 5.3E-19 133.2 9.3 158 247-419 6-166 (199)
152 3c5h_A Glucocorticoid receptor 99.5 6.9E-14 2.4E-18 135.2 14.1 168 247-418 20-252 (255)
153 1nrj_B SR-beta, signal recogni 99.5 2.7E-14 9.3E-19 132.9 10.0 118 246-381 12-135 (218)
154 3izy_P Translation initiation 99.5 3.3E-15 1.1E-19 159.6 3.7 154 247-420 5-167 (537)
155 1jwy_B Dynamin A GTPase domain 99.5 2.5E-14 8.6E-19 141.2 9.1 133 246-383 24-215 (315)
156 1oix_A RAS-related protein RAB 99.5 3E-14 1E-18 130.9 8.8 157 246-417 29-188 (191)
157 3izq_1 HBS1P, elongation facto 99.5 5.9E-14 2E-18 152.4 12.4 144 246-410 167-361 (611)
158 2ged_A SR-beta, signal recogni 99.5 3E-14 1E-18 129.7 8.0 117 247-381 49-171 (193)
159 3tr5_A RF-3, peptide chain rel 99.5 5.5E-14 1.9E-18 150.2 11.1 126 246-392 13-162 (528)
160 3p26_A Elongation factor 1 alp 99.5 7.5E-14 2.6E-18 147.3 11.8 145 246-409 33-226 (483)
161 2j69_A Bacterial dynamin-like 99.5 7E-14 2.4E-18 153.9 11.1 126 247-381 70-245 (695)
162 1kk1_A EIF2gamma; initiation o 99.5 1.2E-13 4E-18 142.7 11.8 163 246-420 10-199 (410)
163 2c78_A Elongation factor TU-A; 99.5 1.1E-13 3.9E-18 142.6 11.2 130 246-396 11-162 (405)
164 1s0u_A EIF-2-gamma, translatio 99.5 2.1E-13 7.2E-18 140.8 12.6 163 246-420 8-197 (408)
165 2ywe_A GTP-binding protein LEP 99.5 2.1E-13 7.1E-18 147.5 12.9 158 245-420 5-183 (600)
166 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 7.3E-14 2.5E-18 144.0 8.8 97 247-343 21-127 (392)
167 3cb4_D GTP-binding protein LEP 99.5 2E-13 7E-18 147.7 11.8 159 246-420 4-181 (599)
168 1zun_B Sulfate adenylate trans 99.4 3.3E-13 1.1E-17 140.5 12.6 145 246-410 24-213 (434)
169 3mca_A HBS1, elongation factor 99.4 1.4E-14 4.7E-19 156.8 1.8 144 245-409 176-371 (592)
170 3ec1_A YQEH GTPase; atnos1, at 99.4 5.6E-15 1.9E-19 151.1 -1.6 166 190-381 98-289 (369)
171 2qpt_A EH domain-containing pr 99.4 1.6E-13 5.6E-18 147.2 9.5 131 246-383 65-235 (550)
172 1d2e_A Elongation factor TU (E 99.4 4.6E-13 1.6E-17 137.8 12.4 129 247-396 4-153 (397)
173 2elf_A Protein translation elo 99.4 2.5E-13 8.5E-18 138.9 10.3 141 248-419 23-178 (370)
174 3r7w_B Gtpase2, GTP-binding pr 99.4 2.7E-13 9.2E-18 136.5 9.9 152 248-420 1-173 (331)
175 1f60_A Elongation factor EEF1A 99.4 1.6E-13 5.6E-18 144.0 8.2 141 247-408 8-199 (458)
176 1jny_A EF-1-alpha, elongation 99.4 4E-13 1.4E-17 140.0 9.6 145 246-409 6-201 (435)
177 1pui_A ENGB, probable GTP-bind 99.4 1.2E-12 4.1E-17 120.8 11.5 156 247-419 27-197 (210)
178 2xex_A Elongation factor G; GT 99.4 6.2E-13 2.1E-17 146.3 11.1 126 246-392 10-155 (693)
179 2h5e_A Peptide chain release f 99.4 1.4E-12 4.7E-17 139.4 12.9 126 246-392 13-162 (529)
180 1zo1_I IF2, translation initia 99.4 3.4E-13 1.2E-17 143.0 8.0 150 247-417 5-163 (501)
181 2x2e_A Dynamin-1; nitration, h 99.4 4.1E-14 1.4E-18 143.3 0.9 167 246-417 31-254 (353)
182 3h2y_A GTPase family protein; 99.4 2.6E-14 9E-19 146.1 -1.3 168 190-383 96-290 (368)
183 1g7s_A Translation initiation 99.4 2.4E-12 8.4E-17 139.2 13.0 158 247-419 6-216 (594)
184 1r5b_A Eukaryotic peptide chai 99.4 1.4E-12 4.8E-17 137.2 10.3 114 246-380 43-195 (467)
185 1dar_A EF-G, elongation factor 99.3 2.5E-12 8.7E-17 141.4 11.2 115 246-381 12-144 (691)
186 3avx_A Elongation factor TS, e 99.3 6.6E-12 2.3E-16 143.1 12.8 153 246-419 296-484 (1289)
187 3t34_A Dynamin-related protein 99.3 2.1E-12 7E-17 131.0 7.7 75 302-381 137-218 (360)
188 2www_A Methylmalonic aciduria 99.3 1E-12 3.6E-17 133.2 5.3 99 301-419 167-277 (349)
189 3zvr_A Dynamin-1; hydrolase, D 99.3 1.7E-12 5.8E-17 143.4 6.3 166 246-416 51-273 (772)
190 2rdo_7 EF-G, elongation factor 99.3 1.3E-11 4.5E-16 136.0 12.7 133 246-392 10-162 (704)
191 1n0u_A EF-2, elongation factor 99.3 3.2E-12 1.1E-16 143.5 7.4 119 246-379 19-163 (842)
192 2qag_A Septin-2, protein NEDD5 99.3 5.7E-12 2E-16 128.3 8.2 159 247-417 38-229 (361)
193 3p32_A Probable GTPase RV1496/ 99.2 1.8E-11 6.3E-16 124.0 9.2 99 301-419 172-282 (355)
194 3vqt_A RF-3, peptide chain rel 99.2 5.8E-11 2E-15 127.3 12.3 128 245-393 30-181 (548)
195 2dy1_A Elongation factor G; tr 99.2 9.5E-11 3.3E-15 128.4 12.4 113 246-379 9-139 (665)
196 3j25_A Tetracycline resistance 99.1 6E-11 2.1E-15 129.4 7.4 126 246-392 2-147 (638)
197 2p67_A LAO/AO transport system 99.1 1E-10 3.5E-15 118.0 7.4 153 247-419 57-259 (341)
198 1yrb_A ATP(GTP)binding protein 99.1 2.9E-10 1E-14 108.7 9.0 113 302-419 110-255 (262)
199 2wsm_A Hydrogenase expression/ 99.0 2.9E-10 9.9E-15 105.9 6.8 154 246-419 30-212 (221)
200 4fn5_A EF-G 1, elongation fact 99.0 1.3E-09 4.4E-14 120.2 12.4 134 245-392 12-165 (709)
201 2qm8_A GTPase/ATPase; G protei 99.0 1.4E-10 5E-15 116.9 4.1 99 301-419 148-259 (337)
202 2qag_C Septin-7; cell cycle, c 98.9 3.9E-09 1.3E-13 109.6 12.0 157 248-416 33-222 (418)
203 1puj_A YLQF, conserved hypothe 98.9 4.4E-10 1.5E-14 110.7 4.1 114 190-315 50-179 (282)
204 2qnr_A Septin-2, protein NEDD5 98.9 1.5E-09 5.2E-14 107.6 6.9 160 248-420 20-213 (301)
205 1f5n_A Interferon-induced guan 98.7 1E-08 3.5E-13 110.6 4.7 103 246-354 38-143 (592)
206 3cnl_A YLQF, putative uncharac 98.7 3.8E-09 1.3E-13 102.9 1.0 103 190-314 46-157 (262)
207 3sop_A Neuronal-specific septi 98.6 1.6E-07 5.6E-12 91.7 11.2 139 248-398 4-175 (270)
208 2hf9_A Probable hydrogenase ni 98.6 5.3E-08 1.8E-12 90.7 6.9 153 246-418 38-221 (226)
209 2qag_B Septin-6, protein NEDD5 98.5 1.5E-07 5.2E-12 97.7 8.7 123 248-383 44-193 (427)
210 2j37_W Signal recognition part 98.4 1.6E-07 5.6E-12 99.5 6.7 122 247-381 102-255 (504)
211 1u0l_A Probable GTPase ENGC; p 98.3 1.9E-06 6.6E-11 85.1 9.8 102 302-417 64-169 (301)
212 1tq4_A IIGP1, interferon-induc 98.3 4.8E-06 1.6E-10 86.2 12.4 153 248-421 71-253 (413)
213 2v3c_C SRP54, signal recogniti 98.2 1.5E-06 5.1E-11 90.5 7.1 115 248-381 101-253 (432)
214 1cip_A Protein (guanine nucleo 98.2 6.5E-07 2.2E-11 90.9 3.9 111 301-419 193-342 (353)
215 1zcb_A G alpha I/13; GTP-bindi 98.1 1.3E-06 4.4E-11 88.9 3.6 111 301-419 201-351 (362)
216 3szr_A Interferon-induced GTP- 98.0 8.4E-06 2.9E-10 88.3 8.9 76 301-381 147-229 (608)
217 2xtz_A Guanine nucleotide-bind 98.0 5.5E-06 1.9E-10 84.0 5.5 71 301-379 183-263 (354)
218 4fid_A G protein alpha subunit 97.9 5.1E-06 1.7E-10 83.9 4.6 72 301-380 161-242 (340)
219 1azs_C GS-alpha; complex (lyas 97.9 9E-06 3.1E-10 83.9 6.5 71 302-380 218-298 (402)
220 2yv5_A YJEQ protein; hydrolase 97.9 3.1E-05 1.1E-09 76.5 9.6 85 327-416 75-164 (302)
221 1puj_A YLQF, conserved hypothe 97.9 1.5E-05 5.2E-10 78.2 7.1 96 305-415 3-100 (282)
222 3ohm_A Guanine nucleotide-bind 97.8 6.1E-06 2.1E-10 82.9 2.3 72 301-380 167-248 (327)
223 3dm5_A SRP54, signal recogniti 97.8 6.7E-05 2.3E-09 78.2 9.6 71 301-382 183-255 (443)
224 2rcn_A Probable GTPase ENGC; Y 97.7 7.1E-06 2.4E-10 83.4 0.7 100 190-313 160-280 (358)
225 3l82_B F-box only protein 4; T 97.6 7.5E-05 2.6E-09 70.6 6.2 115 302-419 97-221 (227)
226 1t9h_A YLOQ, probable GTPase E 97.6 6.9E-06 2.4E-10 81.8 -0.8 68 190-270 117-197 (307)
227 3q5d_A Atlastin-1; G protein, 97.6 4.1E-05 1.4E-09 80.0 4.3 69 246-314 67-153 (447)
228 1j8m_F SRP54, signal recogniti 97.5 0.00024 8.4E-09 70.1 8.5 70 302-381 182-254 (297)
229 3ney_A 55 kDa erythrocyte memb 97.5 8.2E-05 2.8E-09 69.4 4.6 55 249-313 22-78 (197)
230 3cnl_A YLQF, putative uncharac 97.4 8.5E-05 2.9E-09 72.0 4.1 91 309-416 5-96 (262)
231 2yv5_A YJEQ protein; hydrolase 97.4 4.3E-05 1.5E-09 75.5 2.1 74 190-277 110-196 (302)
232 3kl4_A SRP54, signal recogniti 97.3 0.00021 7.3E-09 74.3 6.2 71 301-381 180-253 (433)
233 3ec1_A YQEH GTPase; atnos1, at 97.2 0.00031 1E-08 71.4 5.6 86 324-417 63-158 (369)
234 3h2y_A GTPase family protein; 97.1 0.0003 1E-08 71.5 4.8 86 324-417 61-156 (368)
235 3l2o_B F-box only protein 4; s 97.0 0.00036 1.2E-08 68.9 4.3 99 320-420 199-307 (312)
236 2xxa_A Signal recognition part 96.8 0.0025 8.7E-08 66.1 8.4 68 301-380 184-254 (433)
237 3e70_C DPA, signal recognition 96.6 0.0013 4.3E-08 65.9 4.1 22 248-269 131-152 (328)
238 1u0l_A Probable GTPase ENGC; p 96.5 0.0017 5.8E-08 63.8 4.1 69 190-271 115-194 (301)
239 2px0_A Flagellar biosynthesis 96.4 0.0037 1.3E-07 61.5 6.3 70 301-381 183-254 (296)
240 1rj9_A FTSY, signal recognitio 96.3 0.0029 9.8E-08 62.6 4.9 22 248-269 104-125 (304)
241 2yhs_A FTSY, cell division pro 96.3 0.0028 9.5E-08 66.9 5.0 21 249-269 296-316 (503)
242 1t9h_A YLOQ, probable GTPase E 96.3 0.0083 2.8E-07 59.5 8.1 69 328-400 83-154 (307)
243 1vma_A Cell division protein F 96.3 0.0028 9.5E-08 62.8 4.4 21 248-268 106-126 (306)
244 1kgd_A CASK, peripheral plasma 96.2 0.0025 8.5E-08 57.4 3.3 40 249-288 8-49 (180)
245 1zu4_A FTSY; GTPase, signal re 96.1 0.0073 2.5E-07 60.1 6.6 72 301-380 192-268 (320)
246 1ex7_A Guanylate kinase; subst 95.8 0.0047 1.6E-07 56.8 3.2 42 249-290 4-47 (186)
247 1lvg_A Guanylate kinase, GMP k 95.5 0.0043 1.5E-07 56.9 1.9 41 248-288 6-48 (198)
248 3tau_A Guanylate kinase, GMP k 95.4 0.0088 3E-07 55.1 3.6 40 249-288 11-52 (208)
249 2qor_A Guanylate kinase; phosp 95.3 0.0079 2.7E-07 55.0 3.0 41 249-289 15-57 (204)
250 3a00_A Guanylate kinase, GMP k 95.2 0.0066 2.3E-07 54.8 1.9 40 249-288 4-45 (186)
251 2ffh_A Protein (FFH); SRP54, s 95.0 0.049 1.7E-06 56.3 8.0 68 302-380 182-251 (425)
252 2rcn_A Probable GTPase ENGC; Y 94.7 0.088 3E-06 53.2 9.0 82 328-414 127-212 (358)
253 1s96_A Guanylate kinase, GMP k 94.7 0.012 4E-07 55.3 2.3 36 249-284 19-57 (219)
254 1ye8_A Protein THEP1, hypothet 94.4 0.014 4.8E-07 52.9 1.9 23 248-270 2-24 (178)
255 1zp6_A Hypothetical protein AT 94.2 0.017 5.8E-07 51.6 2.0 21 249-269 12-32 (191)
256 3tr0_A Guanylate kinase, GMP k 94.1 0.018 6.1E-07 52.0 2.0 23 249-271 10-32 (205)
257 4dzz_A Plasmid partitioning pr 93.9 0.095 3.2E-06 47.0 6.6 83 302-397 77-159 (206)
258 1znw_A Guanylate kinase, GMP k 93.9 0.02 6.7E-07 52.5 2.0 23 249-271 23-45 (207)
259 3lnc_A Guanylate kinase, GMP k 93.8 0.016 5.3E-07 54.0 1.2 38 249-286 30-69 (231)
260 3c8u_A Fructokinase; YP_612366 93.7 0.021 7.3E-07 52.3 1.8 22 248-269 24-45 (208)
261 1z6g_A Guanylate kinase; struc 93.3 0.028 9.7E-07 52.2 2.0 24 248-271 25-48 (218)
262 1kag_A SKI, shikimate kinase I 93.3 0.031 1.1E-06 49.0 2.0 22 248-269 6-27 (173)
263 4gp7_A Metallophosphoesterase; 93.2 0.033 1.1E-06 49.6 2.0 19 249-267 12-30 (171)
264 2bdt_A BH3686; alpha-beta prot 93.1 0.034 1.2E-06 49.8 2.0 20 249-268 5-24 (189)
265 3tif_A Uncharacterized ABC tra 93.1 0.033 1.1E-06 52.6 2.0 22 249-270 34-55 (235)
266 2pcj_A ABC transporter, lipopr 93.0 0.032 1.1E-06 52.3 1.8 22 249-270 33-54 (224)
267 2j41_A Guanylate kinase; GMP, 92.8 0.038 1.3E-06 49.8 1.9 23 248-270 8-30 (207)
268 4eun_A Thermoresistant glucoki 92.8 0.039 1.3E-06 50.1 2.0 22 248-269 31-52 (200)
269 3asz_A Uridine kinase; cytidin 92.7 0.037 1.3E-06 50.3 1.7 22 248-269 8-29 (211)
270 2onk_A Molybdate/tungstate ABC 92.7 0.044 1.5E-06 52.1 2.3 24 247-270 25-48 (240)
271 1g6h_A High-affinity branched- 92.6 0.042 1.4E-06 52.6 2.0 22 249-270 36-57 (257)
272 1b0u_A Histidine permease; ABC 92.5 0.044 1.5E-06 52.7 2.0 22 249-270 35-56 (262)
273 2cbz_A Multidrug resistance-as 92.5 0.044 1.5E-06 51.9 2.0 23 248-270 33-55 (237)
274 4g1u_C Hemin import ATP-bindin 92.5 0.044 1.5E-06 52.9 2.0 22 249-270 40-61 (266)
275 1sgw_A Putative ABC transporte 92.4 0.046 1.6E-06 51.1 2.0 23 248-270 37-59 (214)
276 1mv5_A LMRA, multidrug resista 92.4 0.046 1.6E-06 51.8 2.0 23 248-270 30-52 (243)
277 3gfo_A Cobalt import ATP-bindi 92.4 0.046 1.6E-06 53.1 2.0 22 249-270 37-58 (275)
278 1htw_A HI0065; nucleotide-bind 92.4 0.047 1.6E-06 48.5 2.0 22 249-270 36-57 (158)
279 2pze_A Cystic fibrosis transme 92.4 0.047 1.6E-06 51.3 2.0 23 248-270 36-58 (229)
280 2ff7_A Alpha-hemolysin translo 92.3 0.048 1.6E-06 51.9 2.0 23 248-270 37-59 (247)
281 2v9p_A Replication protein E1; 92.3 0.046 1.6E-06 54.0 1.9 22 248-269 128-149 (305)
282 3b85_A Phosphate starvation-in 92.2 0.044 1.5E-06 51.0 1.6 21 249-269 25-45 (208)
283 2d2e_A SUFC protein; ABC-ATPas 92.2 0.053 1.8E-06 51.7 2.2 21 249-269 32-52 (250)
284 1ji0_A ABC transporter; ATP bi 92.2 0.049 1.7E-06 51.6 2.0 22 249-270 35-56 (240)
285 2olj_A Amino acid ABC transpor 92.2 0.05 1.7E-06 52.5 2.0 22 249-270 53-74 (263)
286 2bbw_A Adenylate kinase 4, AK4 92.2 0.055 1.9E-06 50.8 2.3 20 248-267 29-48 (246)
287 1knq_A Gluconate kinase; ALFA/ 92.2 0.052 1.8E-06 47.8 1.9 22 248-269 10-31 (175)
288 2zu0_C Probable ATP-dependent 92.1 0.056 1.9E-06 52.1 2.2 22 248-269 48-69 (267)
289 1vpl_A ABC transporter, ATP-bi 92.1 0.053 1.8E-06 52.0 2.0 22 249-270 44-65 (256)
290 2qi9_C Vitamin B12 import ATP- 92.0 0.055 1.9E-06 51.7 2.0 22 249-270 29-50 (249)
291 2ghi_A Transport protein; mult 92.0 0.054 1.9E-06 52.0 2.0 23 248-270 48-70 (260)
292 2ehv_A Hypothetical protein PH 92.0 0.059 2E-06 49.8 2.2 19 249-267 33-51 (251)
293 2i3b_A HCR-ntpase, human cance 91.9 0.057 2E-06 49.4 2.0 22 248-269 3-24 (189)
294 4a74_A DNA repair and recombin 91.9 0.053 1.8E-06 49.5 1.7 21 249-269 28-48 (231)
295 2ixe_A Antigen peptide transpo 91.8 0.058 2E-06 52.1 2.0 23 248-270 47-69 (271)
296 2ihy_A ABC transporter, ATP-bi 91.8 0.06 2E-06 52.4 2.0 23 248-270 49-71 (279)
297 2nq2_C Hypothetical ABC transp 91.8 0.059 2E-06 51.5 2.0 22 249-270 34-55 (253)
298 1np6_A Molybdopterin-guanine d 91.8 0.062 2.1E-06 48.6 2.0 23 247-269 7-29 (174)
299 2if2_A Dephospho-COA kinase; a 91.7 0.059 2E-06 48.7 1.8 21 248-268 3-23 (204)
300 3lw7_A Adenylate kinase relate 91.7 0.066 2.3E-06 46.2 2.0 18 249-266 4-21 (179)
301 2yz2_A Putative ABC transporte 91.7 0.061 2.1E-06 51.7 2.0 22 249-270 36-57 (266)
302 1cke_A CK, MSSA, protein (cyti 91.6 0.065 2.2E-06 49.1 2.0 22 248-269 7-28 (227)
303 1jjv_A Dephospho-COA kinase; P 91.6 0.069 2.4E-06 48.4 2.2 21 248-268 4-24 (206)
304 3uie_A Adenylyl-sulfate kinase 91.5 0.069 2.3E-06 48.5 2.0 21 249-269 28-48 (200)
305 3kb2_A SPBC2 prophage-derived 91.4 0.07 2.4E-06 46.4 1.9 22 248-269 3-24 (173)
306 2eyu_A Twitching motility prot 91.4 0.069 2.4E-06 51.3 2.0 21 249-269 28-48 (261)
307 4ido_A Atlastin-1; GTPase, GTP 91.3 0.32 1.1E-05 50.7 7.0 22 246-267 67-88 (457)
308 3aez_A Pantothenate kinase; tr 91.2 0.072 2.5E-06 52.6 2.0 21 249-269 93-113 (312)
309 3ec2_A DNA replication protein 91.0 0.081 2.8E-06 46.9 1.9 22 248-269 40-61 (180)
310 3t61_A Gluconokinase; PSI-biol 91.0 0.081 2.8E-06 47.8 1.9 22 248-269 20-41 (202)
311 2pjz_A Hypothetical protein ST 90.9 0.082 2.8E-06 50.9 2.0 23 248-270 32-54 (263)
312 2jeo_A Uridine-cytidine kinase 90.9 0.084 2.9E-06 49.6 2.0 22 248-269 27-48 (245)
313 3tui_C Methionine import ATP-b 90.8 0.09 3.1E-06 53.3 2.2 22 249-270 57-78 (366)
314 3nh6_A ATP-binding cassette SU 90.6 0.06 2E-06 53.2 0.7 22 248-269 82-103 (306)
315 2f1r_A Molybdopterin-guanine d 90.6 0.045 1.5E-06 49.4 -0.2 22 248-269 4-25 (171)
316 1ly1_A Polynucleotide kinase; 90.6 0.1 3.5E-06 45.6 2.2 20 249-268 5-24 (181)
317 2qt1_A Nicotinamide riboside k 90.5 0.099 3.4E-06 47.4 2.1 22 248-269 23-44 (207)
318 3vaa_A Shikimate kinase, SK; s 90.5 0.1 3.5E-06 47.3 2.1 24 246-269 25-48 (199)
319 2jaq_A Deoxyguanosine kinase; 90.5 0.099 3.4E-06 46.7 2.0 21 249-269 3-23 (205)
320 2bbs_A Cystic fibrosis transme 90.1 0.097 3.3E-06 51.2 1.7 23 248-270 66-88 (290)
321 1lw7_A Transcriptional regulat 89.9 0.09 3.1E-06 52.6 1.3 24 247-270 171-194 (365)
322 1sq5_A Pantothenate kinase; P- 89.8 0.11 3.7E-06 50.9 1.8 22 248-269 82-103 (308)
323 2kjq_A DNAA-related protein; s 89.8 0.097 3.3E-06 45.8 1.3 21 249-269 39-59 (149)
324 3cwq_A Para family chromosome 89.8 0.59 2E-05 42.7 6.7 81 302-398 69-151 (209)
325 1z47_A CYSA, putative ABC-tran 89.8 0.12 4.2E-06 52.1 2.2 22 249-270 44-65 (355)
326 3fvq_A Fe(3+) IONS import ATP- 89.7 0.12 4E-06 52.3 2.0 22 249-270 33-54 (359)
327 2yyz_A Sugar ABC transporter, 89.6 0.13 4.4E-06 52.0 2.2 22 249-270 32-53 (359)
328 1qhx_A CPT, protein (chloramph 89.6 0.14 4.8E-06 44.9 2.2 21 249-269 6-26 (178)
329 3cm0_A Adenylate kinase; ATP-b 89.6 0.14 4.7E-06 45.3 2.2 21 248-268 6-26 (186)
330 1rz3_A Hypothetical protein rb 89.5 0.12 4.2E-06 46.9 1.8 21 248-268 24-44 (201)
331 1nks_A Adenylate kinase; therm 89.5 0.12 4.2E-06 45.5 1.8 21 249-269 4-24 (194)
332 1g29_1 MALK, maltose transport 89.4 0.13 4.6E-06 52.0 2.2 23 249-271 32-54 (372)
333 2it1_A 362AA long hypothetical 89.4 0.14 4.7E-06 51.8 2.2 22 249-270 32-53 (362)
334 2pt7_A CAG-ALFA; ATPase, prote 89.4 0.11 3.8E-06 51.6 1.5 23 248-270 173-195 (330)
335 3rlf_A Maltose/maltodextrin im 89.3 0.14 4.8E-06 52.1 2.2 23 249-271 32-54 (381)
336 2gza_A Type IV secretion syste 89.3 0.13 4.4E-06 51.7 1.9 23 248-270 177-199 (361)
337 1kht_A Adenylate kinase; phosp 89.2 0.15 5.2E-06 44.9 2.2 20 249-268 6-25 (192)
338 1v43_A Sugar-binding transport 89.2 0.14 4.9E-06 51.8 2.2 22 249-270 40-61 (372)
339 2rhm_A Putative kinase; P-loop 89.1 0.14 4.9E-06 45.3 1.9 20 249-268 8-27 (193)
340 4e22_A Cytidylate kinase; P-lo 89.0 0.15 5.3E-06 48.2 2.2 20 248-267 29-48 (252)
341 3jvv_A Twitching mobility prot 89.0 0.14 4.8E-06 51.6 1.9 21 249-269 126-146 (356)
342 2pez_A Bifunctional 3'-phospho 88.9 0.16 5.3E-06 45.0 2.0 21 249-269 8-28 (179)
343 2x8a_A Nuclear valosin-contain 88.8 0.15 5.2E-06 49.1 2.0 22 248-269 46-67 (274)
344 1via_A Shikimate kinase; struc 88.7 0.18 6E-06 44.4 2.2 23 247-269 5-27 (175)
345 2w0m_A SSO2452; RECA, SSPF, un 88.6 0.16 5.5E-06 46.0 2.0 20 249-268 26-45 (235)
346 2yvu_A Probable adenylyl-sulfa 88.6 0.17 5.8E-06 45.0 2.0 21 249-269 16-36 (186)
347 2ewv_A Twitching motility prot 88.6 0.15 5.3E-06 51.4 1.9 21 249-269 139-159 (372)
348 2plr_A DTMP kinase, probable t 88.5 0.17 5.8E-06 45.4 2.0 21 249-269 7-27 (213)
349 2v54_A DTMP kinase, thymidylat 88.5 0.18 6.1E-06 45.2 2.1 22 248-269 6-27 (204)
350 1nij_A Hypothetical protein YJ 88.4 0.13 4.6E-06 50.5 1.3 23 248-270 6-28 (318)
351 1ixz_A ATP-dependent metallopr 88.3 0.18 6E-06 47.3 2.0 21 249-269 52-72 (254)
352 2pbr_A DTMP kinase, thymidylat 88.3 0.18 6.1E-06 44.6 1.9 20 249-268 3-22 (195)
353 3d31_A Sulfate/molybdate ABC t 88.2 0.13 4.3E-06 51.8 1.0 22 249-270 29-50 (348)
354 1xjc_A MOBB protein homolog; s 88.2 0.19 6.4E-06 45.4 2.0 23 247-269 5-27 (169)
355 3gd7_A Fusion complex of cysti 88.2 0.17 5.8E-06 51.6 2.0 23 248-270 49-71 (390)
356 1y63_A LMAJ004144AAA protein; 88.2 0.18 6.2E-06 45.0 2.0 22 248-269 12-33 (184)
357 1tev_A UMP-CMP kinase; ploop, 88.1 0.2 6.8E-06 44.2 2.2 20 249-268 6-25 (196)
358 1cr0_A DNA primase/helicase; R 88.1 0.17 5.7E-06 48.7 1.7 21 249-269 38-58 (296)
359 3tqc_A Pantothenate kinase; bi 87.9 0.19 6.4E-06 50.0 2.0 21 249-269 95-115 (321)
360 1gtv_A TMK, thymidylate kinase 87.9 0.082 2.8E-06 47.9 -0.6 21 249-269 3-23 (214)
361 2z0h_A DTMP kinase, thymidylat 87.9 0.2 6.7E-06 44.6 2.0 21 249-269 3-23 (197)
362 3b9q_A Chloroplast SRP recepto 87.8 0.19 6.6E-06 49.3 2.0 22 248-269 102-123 (302)
363 3fb4_A Adenylate kinase; psych 87.5 0.21 7.3E-06 45.3 2.0 22 248-269 2-23 (216)
364 2wwf_A Thymidilate kinase, put 87.5 0.21 7.1E-06 45.0 1.9 21 248-268 12-32 (212)
365 1oxx_K GLCV, glucose, ABC tran 87.5 0.12 4E-06 52.1 0.2 22 249-270 34-55 (353)
366 3iij_A Coilin-interacting nucl 87.4 0.23 7.9E-06 43.8 2.1 21 248-268 13-33 (180)
367 2pt5_A Shikimate kinase, SK; a 87.4 0.22 7.6E-06 43.2 2.0 20 249-268 3-22 (168)
368 1uf9_A TT1252 protein; P-loop, 87.4 0.21 7.1E-06 44.6 1.9 22 248-269 10-31 (203)
369 3trf_A Shikimate kinase, SK; a 87.4 0.23 7.9E-06 43.8 2.1 22 248-269 7-28 (185)
370 3kjh_A CO dehydrogenase/acetyl 87.3 0.72 2.5E-05 42.2 5.6 62 302-377 133-194 (254)
371 2oap_1 GSPE-2, type II secreti 87.3 0.2 6.8E-06 52.9 1.9 23 248-270 262-284 (511)
372 1p9r_A General secretion pathw 87.2 0.21 7.1E-06 51.4 1.9 21 249-269 170-190 (418)
373 2vp4_A Deoxynucleoside kinase; 87.2 0.16 5.6E-06 47.1 1.1 21 249-269 23-43 (230)
374 2c95_A Adenylate kinase 1; tra 87.2 0.23 7.8E-06 44.1 2.0 21 248-268 11-31 (196)
375 3dl0_A Adenylate kinase; phosp 87.1 0.23 7.9E-06 45.2 2.0 22 248-269 2-23 (216)
376 2bwj_A Adenylate kinase 5; pho 87.1 0.23 7.9E-06 44.2 2.0 22 248-269 14-35 (199)
377 1nn5_A Similar to deoxythymidy 87.1 0.23 7.7E-06 44.8 1.9 21 248-268 11-31 (215)
378 1yqt_A RNAse L inhibitor; ATP- 87.0 0.23 7.9E-06 52.7 2.2 23 248-270 49-71 (538)
379 1iy2_A ATP-dependent metallopr 87.0 0.23 7.9E-06 47.3 2.0 23 248-270 75-97 (278)
380 3ozx_A RNAse L inhibitor; ATP 87.0 0.22 7.5E-06 52.9 2.0 22 249-270 28-49 (538)
381 1e6c_A Shikimate kinase; phosp 86.9 0.26 9E-06 42.8 2.2 22 248-269 4-25 (173)
382 3kta_A Chromosome segregation 86.9 0.24 8.3E-06 43.7 2.0 21 249-269 29-49 (182)
383 1odf_A YGR205W, hypothetical 3 86.8 0.24 8.1E-06 48.3 2.0 21 248-268 33-53 (290)
384 1vht_A Dephospho-COA kinase; s 86.8 0.24 8.4E-06 45.2 2.0 21 248-268 6-26 (218)
385 3nwj_A ATSK2; P loop, shikimat 86.7 0.24 8.2E-06 47.3 1.9 21 248-268 50-70 (250)
386 2cdn_A Adenylate kinase; phosp 86.6 0.27 9.3E-06 44.2 2.2 22 248-269 22-43 (201)
387 3end_A Light-independent proto 86.6 1.5 5.1E-05 42.2 7.6 67 302-378 158-225 (307)
388 1n0w_A DNA repair protein RAD5 86.5 0.26 8.8E-06 45.3 2.0 21 249-269 27-47 (243)
389 1qf9_A UMP/CMP kinase, protein 86.5 0.25 8.7E-06 43.4 1.9 22 248-269 8-29 (194)
390 2npi_A Protein CLP1; CLP1-PCF1 86.5 0.23 7.8E-06 51.8 1.7 22 248-269 140-161 (460)
391 1in4_A RUVB, holliday junction 86.4 0.25 8.6E-06 48.7 2.0 22 248-269 53-74 (334)
392 3j16_B RLI1P; ribosome recycli 86.3 0.27 9.2E-06 53.1 2.2 22 249-270 106-127 (608)
393 3n70_A Transport activator; si 86.3 0.87 3E-05 38.9 5.1 22 248-269 26-47 (145)
394 2iyv_A Shikimate kinase, SK; t 86.2 0.29 1E-05 43.2 2.1 21 248-268 4-24 (184)
395 2obl_A ESCN; ATPase, hydrolase 86.2 0.25 8.4E-06 49.5 1.8 23 248-270 73-95 (347)
396 1qhl_A Protein (cell division 86.1 0.16 5.4E-06 47.9 0.3 22 249-270 30-51 (227)
397 2cvh_A DNA repair and recombin 86.1 0.28 9.6E-06 44.3 2.0 20 249-268 23-42 (220)
398 3ea0_A ATPase, para family; al 86.0 1.2 4.2E-05 40.7 6.4 67 302-380 120-186 (245)
399 1zd8_A GTP:AMP phosphotransfer 86.0 0.28 9.6E-06 45.2 2.0 22 248-269 9-30 (227)
400 2vli_A Antibiotic resistance p 85.9 0.24 8.1E-06 43.6 1.3 22 248-269 7-28 (183)
401 3euj_A Chromosome partition pr 85.7 0.28 9.7E-06 51.4 2.0 22 248-269 31-52 (483)
402 1aky_A Adenylate kinase; ATP:A 85.6 0.32 1.1E-05 44.4 2.2 22 248-269 6-27 (220)
403 1ukz_A Uridylate kinase; trans 85.5 0.33 1.1E-05 43.6 2.1 22 248-269 17-38 (203)
404 1zuh_A Shikimate kinase; alpha 85.5 0.34 1.2E-05 42.2 2.2 23 246-268 7-29 (168)
405 1m7g_A Adenylylsulfate kinase; 85.4 0.32 1.1E-05 44.3 2.0 21 249-269 28-48 (211)
406 3k9g_A PF-32 protein; ssgcid, 85.4 1.5 5.1E-05 41.1 6.8 64 302-378 146-209 (267)
407 2og2_A Putative signal recogni 85.3 0.31 1.1E-05 49.1 2.0 22 248-269 159-180 (359)
408 3bk7_A ABC transporter ATP-bin 85.2 0.31 1E-05 52.6 2.0 23 248-270 119-141 (607)
409 1e4v_A Adenylate kinase; trans 85.1 0.31 1.1E-05 44.4 1.8 21 248-268 2-22 (214)
410 3b5x_A Lipid A export ATP-bind 84.9 0.33 1.1E-05 51.7 2.1 23 248-270 371-393 (582)
411 3a4m_A L-seryl-tRNA(SEC) kinas 84.8 0.37 1.3E-05 45.7 2.2 22 248-269 6-27 (260)
412 3b60_A Lipid A export ATP-bind 84.8 0.31 1.1E-05 52.0 1.8 23 248-270 371-393 (582)
413 1zak_A Adenylate kinase; ATP:A 84.7 0.35 1.2E-05 44.3 1.9 22 248-269 7-28 (222)
414 1svm_A Large T antigen; AAA+ f 84.5 0.35 1.2E-05 49.1 2.0 22 248-269 171-192 (377)
415 2xb4_A Adenylate kinase; ATP-b 84.4 0.4 1.4E-05 44.3 2.2 21 249-269 3-23 (223)
416 2yl4_A ATP-binding cassette SU 84.4 0.29 1E-05 52.3 1.4 23 248-270 372-394 (595)
417 1yqt_A RNAse L inhibitor; ATP- 84.2 0.38 1.3E-05 51.0 2.2 24 248-271 314-337 (538)
418 3ozx_A RNAse L inhibitor; ATP 84.2 0.36 1.2E-05 51.2 2.0 22 249-270 297-318 (538)
419 2grj_A Dephospho-COA kinase; T 84.1 0.39 1.3E-05 43.8 2.0 22 248-269 14-35 (192)
420 1hyq_A MIND, cell division inh 84.1 1.1 3.9E-05 41.7 5.3 66 302-381 112-177 (263)
421 1g3q_A MIND ATPase, cell divis 84.0 0.99 3.4E-05 41.3 4.7 65 302-380 113-177 (237)
422 3qf4_B Uncharacterized ABC tra 84.0 0.33 1.1E-05 52.1 1.6 23 248-270 383-405 (598)
423 1f2t_A RAD50 ABC-ATPase; DNA d 83.8 0.46 1.6E-05 41.3 2.2 18 250-267 27-44 (149)
424 3bfv_A CAPA1, CAPB2, membrane 83.6 1.7 5.9E-05 41.5 6.4 64 302-379 193-257 (271)
425 2p5t_B PEZT; postsegregational 83.6 0.29 1E-05 46.2 0.9 22 248-269 34-55 (253)
426 2dpy_A FLII, flagellum-specifi 83.5 0.38 1.3E-05 49.7 1.8 23 248-270 159-181 (438)
427 3bk7_A ABC transporter ATP-bin 83.4 0.43 1.5E-05 51.4 2.2 23 249-271 385-407 (607)
428 2ze6_A Isopentenyl transferase 83.3 0.44 1.5E-05 45.1 2.0 21 249-269 4-24 (253)
429 3be4_A Adenylate kinase; malar 83.2 0.44 1.5E-05 43.6 2.0 22 248-269 7-28 (217)
430 4eaq_A DTMP kinase, thymidylat 83.2 0.45 1.5E-05 44.4 2.0 21 249-269 29-49 (229)
431 3la6_A Tyrosine-protein kinase 83.1 2.2 7.5E-05 41.2 7.0 66 302-380 203-268 (286)
432 3qf7_A RAD50; ABC-ATPase, ATPa 82.9 0.47 1.6E-05 47.6 2.2 19 249-267 26-44 (365)
433 1jbk_A CLPB protein; beta barr 82.9 0.49 1.7E-05 40.9 2.0 21 249-269 46-66 (195)
434 1wcv_1 SOJ, segregation protei 82.8 2 6.8E-05 40.2 6.4 69 302-380 113-183 (257)
435 3ake_A Cytidylate kinase; CMP 82.5 0.5 1.7E-05 42.2 2.0 21 248-268 4-24 (208)
436 4a82_A Cystic fibrosis transme 82.5 0.29 9.9E-06 52.2 0.4 23 248-270 369-391 (578)
437 3j16_B RLI1P; ribosome recycli 82.4 0.5 1.7E-05 50.9 2.3 23 249-271 381-403 (608)
438 3tlx_A Adenylate kinase 2; str 82.3 0.54 1.8E-05 44.1 2.2 21 248-268 31-51 (243)
439 1gvn_B Zeta; postsegregational 82.3 0.49 1.7E-05 45.8 1.9 21 249-269 36-56 (287)
440 1nlf_A Regulatory protein REPA 82.2 0.47 1.6E-05 45.2 1.7 20 249-268 33-52 (279)
441 3qf4_A ABC transporter, ATP-bi 82.1 0.35 1.2E-05 51.7 0.9 23 248-270 371-393 (587)
442 1ak2_A Adenylate kinase isoenz 82.1 0.56 1.9E-05 43.4 2.2 22 248-269 18-39 (233)
443 1uj2_A Uridine-cytidine kinase 81.9 0.56 1.9E-05 44.0 2.1 21 248-268 24-44 (252)
444 1lv7_A FTSH; alpha/beta domain 81.9 0.53 1.8E-05 44.0 2.0 22 248-269 47-68 (257)
445 2f6r_A COA synthase, bifunctio 81.7 0.53 1.8E-05 45.3 1.9 21 248-268 77-97 (281)
446 1q3t_A Cytidylate kinase; nucl 81.7 0.55 1.9E-05 43.6 2.0 21 248-268 18-38 (236)
447 4f4c_A Multidrug resistance pr 81.5 0.36 1.2E-05 56.7 0.7 22 248-269 1107-1128(1321)
448 1sxj_A Activator 1 95 kDa subu 81.1 1.8 6E-05 45.3 5.8 21 249-269 80-100 (516)
449 1ltq_A Polynucleotide kinase; 81.1 0.63 2.1E-05 44.5 2.2 20 249-268 5-24 (301)
450 3r20_A Cytidylate kinase; stru 79.9 0.74 2.5E-05 43.5 2.2 21 248-268 11-31 (233)
451 3cr8_A Sulfate adenylyltranfer 79.3 0.44 1.5E-05 50.8 0.5 22 248-269 371-392 (552)
452 2ph1_A Nucleotide-binding prot 79.3 4.5 0.00015 37.8 7.5 64 302-378 130-194 (262)
453 2oze_A ORF delta'; para, walke 78.7 3.8 0.00013 38.9 7.0 66 302-380 156-226 (298)
454 3bos_A Putative DNA replicatio 78.6 0.81 2.8E-05 41.4 2.0 22 248-269 54-75 (242)
455 1xwi_A SKD1 protein; VPS4B, AA 78.5 3.1 0.0001 40.6 6.3 22 248-269 47-68 (322)
456 2dr3_A UPF0273 protein PH0284; 78.5 0.8 2.7E-05 41.9 2.0 19 249-267 26-44 (247)
457 2w58_A DNAI, primosome compone 78.5 0.82 2.8E-05 40.9 2.0 22 248-269 56-77 (202)
458 1bif_A 6-phosphofructo-2-kinas 78.2 0.79 2.7E-05 47.4 2.0 103 248-359 41-147 (469)
459 1cp2_A CP2, nitrogenase iron p 77.4 3.4 0.00012 38.5 6.1 82 302-391 117-199 (269)
460 2iw3_A Elongation factor 3A; a 77.2 0.6 2.1E-05 53.0 0.8 23 248-270 701-723 (986)
461 3qks_A DNA double-strand break 77.2 1 3.5E-05 41.1 2.2 18 250-267 27-44 (203)
462 3q9l_A Septum site-determining 77.1 4.2 0.00014 37.5 6.5 67 302-378 115-185 (260)
463 2p65_A Hypothetical protein PF 76.8 0.74 2.5E-05 39.8 1.1 22 248-269 45-66 (187)
464 2xj4_A MIPZ; replication, cell 76.7 2.8 9.4E-05 40.0 5.3 33 302-343 105-137 (286)
465 3gmt_A Adenylate kinase; ssgci 76.7 0.95 3.2E-05 42.8 1.9 21 248-268 10-30 (230)
466 1njg_A DNA polymerase III subu 76.6 0.99 3.4E-05 40.3 1.9 21 249-269 48-68 (250)
467 1pzn_A RAD51, DNA repair and r 76.5 0.89 3E-05 45.3 1.7 21 249-269 134-154 (349)
468 3zvl_A Bifunctional polynucleo 76.1 1 3.4E-05 46.0 2.1 20 249-268 261-280 (416)
469 3ux8_A Excinuclease ABC, A sub 75.9 0.65 2.2E-05 50.3 0.6 19 249-267 351-369 (670)
470 2iw3_A Elongation factor 3A; a 75.9 0.96 3.3E-05 51.4 2.0 22 248-269 463-484 (986)
471 2qby_A CDC6 homolog 1, cell di 75.4 1 3.5E-05 43.9 1.8 22 248-269 47-68 (386)
472 1tf7_A KAIC; homohexamer, hexa 75.2 0.99 3.4E-05 47.4 1.7 18 249-266 42-59 (525)
473 4aby_A DNA repair protein RECN 74.7 0.39 1.3E-05 48.3 -1.4 21 248-268 62-82 (415)
474 4b4t_L 26S protease subunit RP 74.6 2.3 8E-05 43.9 4.3 23 247-269 216-238 (437)
475 3sr0_A Adenylate kinase; phosp 74.5 1.3 4.4E-05 40.8 2.1 21 249-269 3-23 (206)
476 1p5z_B DCK, deoxycytidine kina 74.4 0.77 2.6E-05 43.3 0.6 22 248-269 26-47 (263)
477 3g5u_A MCG1178, multidrug resi 74.3 0.95 3.2E-05 52.9 1.5 23 248-270 418-440 (1284)
478 2h92_A Cytidylate kinase; ross 74.3 1.3 4.3E-05 40.2 2.0 22 248-269 5-26 (219)
479 2afh_E Nitrogenase iron protei 74.1 5.3 0.00018 37.8 6.5 82 302-391 120-202 (289)
480 2chg_A Replication factor C sm 74.1 1.3 4.4E-05 39.1 2.0 22 248-269 40-61 (226)
481 4f4c_A Multidrug resistance pr 74.0 1 3.6E-05 52.7 1.7 22 248-269 446-467 (1321)
482 3b9p_A CG5977-PA, isoform A; A 74.0 1.2 4.1E-05 42.3 1.9 22 248-269 56-77 (297)
483 1fnn_A CDC6P, cell division co 73.8 1.3 4.3E-05 43.5 2.0 22 248-269 46-67 (389)
484 2ocp_A DGK, deoxyguanosine kin 73.6 1.2 4.2E-05 41.2 1.8 21 249-269 5-25 (241)
485 1jr3_A DNA polymerase III subu 73.5 2.4 8.1E-05 41.4 3.9 21 249-269 41-61 (373)
486 1sxj_E Activator 1 40 kDa subu 73.5 1.1 3.7E-05 43.7 1.5 43 334-379 135-177 (354)
487 2r62_A Cell division protease 73.3 1.4 4.9E-05 41.1 2.2 22 248-269 46-67 (268)
488 1e69_A Chromosome segregation 73.3 1.2 4E-05 43.6 1.6 19 249-267 27-45 (322)
489 3cio_A ETK, tyrosine-protein k 73.2 6.2 0.00021 38.1 6.8 65 302-379 215-279 (299)
490 3qkt_A DNA double-strand break 72.7 1.5 5.1E-05 43.2 2.2 18 250-267 27-44 (339)
491 3umf_A Adenylate kinase; rossm 72.7 1.5 5.3E-05 40.8 2.2 21 249-269 32-52 (217)
492 3cf0_A Transitional endoplasmi 72.4 1.4 4.8E-05 42.5 1.9 22 248-269 51-72 (301)
493 2ga8_A Hypothetical 39.9 kDa p 72.3 1.4 4.9E-05 44.3 2.0 22 248-269 26-47 (359)
494 2qz4_A Paraplegin; AAA+, SPG7, 72.1 1.5 5.2E-05 40.5 2.0 22 248-269 41-62 (262)
495 3h4m_A Proteasome-activating n 72.0 1.5 5E-05 41.4 1.9 22 248-269 53-74 (285)
496 3g5u_A MCG1178, multidrug resi 71.8 1.3 4.6E-05 51.7 1.9 22 248-269 1061-1082(1284)
497 1l8q_A Chromosomal replication 71.3 1.5 5.2E-05 42.4 1.9 22 248-269 39-60 (324)
498 1tf7_A KAIC; homohexamer, hexa 71.2 1.4 4.9E-05 46.2 1.8 21 249-269 284-304 (525)
499 4edh_A DTMP kinase, thymidylat 71.2 1.3 4.5E-05 41.0 1.3 21 249-269 9-29 (213)
500 1w1w_A Structural maintenance 71.0 1.6 5.6E-05 44.3 2.1 21 249-269 29-49 (430)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=1.5e-66 Score=528.88 Aligned_cols=311 Identities=41% Similarity=0.667 Sum_probs=276.9
Q ss_pred CceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 012884 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (454)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (454)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------~~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (342)
T 1lnz_A 1 MFVDQVKVYVKGGDGGNGMVA--------------FRREKY----VPKGGPAGG----DGGKGGDVVFEVDEGLRTLMDF 58 (342)
T ss_dssp CEEEEEEEEEECCCCCCCCCC--------------BCCCSS----SCCCCBCCC----CCCCCCCEEEEECTTCCCSCGG
T ss_pred CCcceEEEEEEecCCCCceee--------------eehhhc----ccCCCCCCC----CCCCCCeEEEEeCCCcChHHHh
Confidence 599999999999999999997 889998 899999998 9999999999999999999999
Q ss_pred cccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEec-CCceeccccCcCcceeeecCCCCCCCcccc---
Q 012884 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEV--- 230 (454)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~~-~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~~--- 230 (454)
+++++|+|++|+||. +++++|++|+|++|+||+||+|++. ++++++||.++|+++++|+||+||.++..+
T Consensus 59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~ 132 (342)
T 1lnz_A 59 RYKKHFKAIRGEHGM------SKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATP 132 (342)
T ss_dssp GTCCEEECCCCCCCC------STTCCCCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBT
T ss_pred CccceEEcCCCCCCC------CCCCcCCCCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccc
Confidence 999999999999986 3789999999999999999999995 568999999999999999999999997543
Q ss_pred ----chh------hhccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCccccc
Q 012884 231 ----PEN------RRKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 300 (454)
Q Consensus 231 ----~~~------~~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~ 300 (454)
|+. .+.+.+.+++|++++|++||+||||||||||+|+++++.+++|+|||++|+.+.+.++. .
T Consensus 133 ~~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-------~ 205 (342)
T 1lnz_A 133 ANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-------G 205 (342)
T ss_dssp TBSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-------S
T ss_pred cccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-------C
Confidence 221 12355678899999999999999999999999999999999999999999999988653 1
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCC---CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~---~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..++||||||+++.++...++.+.|++|+++||++|+|+|+++ .++.+++..|.++|..|.+.+.++|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 4799999999999988888999999999999999999999998 7788899999999999987777999999999999
Q ss_pred CCChHHHHHHHHHHHHh-cCCceecccccccHHHHHHHHHhhcC
Q 012884 378 LPEARDRLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 378 l~~~~e~~~~l~~~l~~-~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+...++..+++++.+.. ..+.++++.+..++.+.++.+...+.
T Consensus 286 l~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 286 MPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp STTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 98766555566555443 35678899999999999999886653
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=3.6e-59 Score=485.67 Aligned_cols=309 Identities=41% Similarity=0.627 Sum_probs=270.4
Q ss_pred CceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhhc
Q 012884 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (454)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~~ 154 (454)
+|+|+++|+|+||+|||||+| |||||| +|+|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------f~re~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (416)
T 1udx_A 1 MFQDVLVITVAAGRGGDGAVS--------------FRREKF----VPKGGPDGG----DGGRGGSVYLRARGSVDSLSRL 58 (416)
T ss_dssp CCCSEEEEEEECCCCCCCCCC--------------BCCBTT----BSCCCBCCC----CCCCCCCEEEEECTTCCSSTTS
T ss_pred CCcceEEEEEEecCCCCceee--------------eecccc----ccCCCCCCC----CCCCCCeEEEEeCCCcCchhhh
Confidence 599999999999999999997 889998 899999998 9999999999999999999999
Q ss_pred cccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEe-cCCceeccccCcCcceeeecCCCCCCCcccc---
Q 012884 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEV--- 230 (454)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~-~~~~~~~dl~~~g~~~i~A~gG~Gg~~~~~~--- 230 (454)
++++|+|++|+||. +++++|++|+|++|+||+||+|++ .++++++||.++|+++++|+||+||.|+..+
T Consensus 59 -~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~ 131 (416)
T 1udx_A 59 -SKRTYKAEDGEHGR------GSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSP 131 (416)
T ss_dssp -CSSCEECCCCCCCB------TTTBCCCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCS
T ss_pred -hhceEEcCCCCCCC------CCCCcCCCCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecc
Confidence 89999999999986 378999999999999999999999 4578999999999999999999999997543
Q ss_pred ----chhh------hccccccccccccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCccccc
Q 012884 231 ----PENR------RKRMTTLTTNIMRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYS 300 (454)
Q Consensus 231 ----~~~~------~~~~~~l~~k~~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~ 300 (454)
|+.. +.+.+.++++..++|+|||+|||||||||++|++..+.+++|+|||+.|+.+.+..+. .
T Consensus 132 ~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-------~ 204 (416)
T 1udx_A 132 TRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-------E 204 (416)
T ss_dssp SCSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-------S
T ss_pred cccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-------c
Confidence 3211 2345667888889999999999999999999999999999999999999999987642 1
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++++||||+++.++...++...|++++++|+.+|+|+|++ ..+..++..+.+++..|...+..+|.++|+||+|+..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 379999999999988888888888999999999999999998 6677888888888887765455799999999999987
Q ss_pred hHHHHHHHHHHHHhcC--CceecccccccHHHHHHHHHhhcCc
Q 012884 381 ARDRLQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 381 ~~e~~~~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
. +.++.+.+.+...+ +..+++.+..++.+.+..+...+..
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 6 56667777766544 5677888899999999998877654
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=4.7e-26 Score=240.88 Aligned_cols=269 Identities=20% Similarity=0.216 Sum_probs=184.1
Q ss_pred CCceEEEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCcCCCCCCcCCCCCCCceEEEEecCCcchhhh
Q 012884 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (454)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~gp~Gg~~~~~GG~GG~v~~~~~~~~~~l~~ 153 (454)
..|+|++.|.+..| +.| |++|++ ++ -|||||.|+++ ..+++|++
T Consensus 86 ~~~iDe~~v~~~~~-----p~S--------------ft~Ed~----ve-----------~~~hGg~~v~~--~~l~~l~~ 129 (482)
T 1xzp_A 86 GEDVDEVVVVFYKS-----PKS--------------YTGEDM----VE-----------VMCHGGPLVVK--KLLDLFLK 129 (482)
T ss_dssp SCCCCEEEEEEECT-----TSS--------------SSSSCE----EE-----------EEECSCHHHHH--HHHHHHHT
T ss_pred CeeeeEEEEEEEeC-----CCc--------------CCCCCE----ee-----------ecCcCcHHHHH--HHHHHHHH
Confidence 46999999999987 654 888886 32 56899999976 55778887
Q ss_pred ccccceEecCCCCCCCCCCcCcccCCCCCCCCCeeeeCCceeEEEecC-CceeccccCcCcc---eeeecCCCCCCCcc-
Q 012884 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKR-GKLFSDLAHPGDE---VLVARGGRGGISLL- 228 (454)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~vPvgtvv~~~~-~~~~~dl~~~g~~---~i~A~gG~Gg~~~~- 228 (454)
+ ....|+.|+..+. ...+|+ + |.+ .+.++|+.+...+ .++++++.|+.++.
T Consensus 130 ~---g~r~A~~Geft~r---------af~nGk---~---------Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~ 185 (482)
T 1xzp_A 130 S---GARMAEPGEFTKR---------AFLNGK---M---------DLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFV 185 (482)
T ss_dssp T---TCEECCTTHHHHH---------HHHTTS---S---------CHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHH
T ss_pred c---CCEeCCCCCcCCc---------CCCcCC---c---------CHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHH
Confidence 6 4556888876432 233443 0 221 3566777655432 25666777765431
Q ss_pred ------------------ccchh--h----h---ccccccccccc-------------cccccccCCCCCHHHHHHHHHc
Q 012884 229 ------------------EVPEN--R----R---KRMTTLTTNIM-------------RDDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 229 ------------------~~~~~--~----~---~~~~~l~~k~~-------------adVglVG~pNaGKSTLlnaL~~ 268 (454)
++|.. . . ...+..+++.+ .+|++||.||||||||+|+|++
T Consensus 186 ~~~r~~l~~~~~~ie~~idf~eei~~~~~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~ 265 (482)
T 1xzp_A 186 DSLRRELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLN 265 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHC
Confidence 01110 0 0 00011111111 5799999999999999999999
Q ss_pred CCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCc-cccccCCcccc-hhhcccccccEEEEEEeCCCCC
Q 012884 269 AKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLGR-NFLRHLRRTRLLVHVIDAAAEN 345 (454)
Q Consensus 269 ~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii-~~a~~~~~lg~-~fl~~i~~advll~ViDas~~~ 345 (454)
.+. .++++|+||+++....+.++. ..++||||||+. +.....+.++. .++.+++++|++|+|+|++++.
T Consensus 266 ~~~a~vs~~~gTT~d~~~~~i~~~g--------~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~ 337 (482)
T 1xzp_A 266 EDRAIVTDIPGTTRDVISEEIVIRG--------ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPL 337 (482)
T ss_dssp HTBCCCCCSSCCSSCSCCEEEEETT--------EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCC
T ss_pred CCCCccCCCCCeeeeeEEEEEecCC--------eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCC
Confidence 875 469999999999999887642 479999999998 65544444443 3577899999999999999887
Q ss_pred CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-cCCceecccccccHHHHHHHHHhhc
Q 012884 346 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 346 ~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.++.+.+ +.+ .++|+++|+||+|+.+... .+++.+.+.. ..+.++++.+..++.+.++.+....
T Consensus 338 s~~~~~il-~~l-------~~~piivV~NK~DL~~~~~-~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 338 DEEDRKIL-ERI-------KNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp CHHHHHHH-HHH-------TTSSEEEEEEECSSCCCCC-HHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CHHHHHHH-HHh-------cCCCEEEEEECcccccccC-HHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 77776544 333 2689999999999975311 2333333221 2457789999999999999888654
No 4
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3e-24 Score=220.24 Aligned_cols=124 Identities=28% Similarity=0.469 Sum_probs=110.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.++|||||+||||||||+|+|++++..+++|||||++|+.|.+.+.. .+++|+||||++++++.+++++.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--------~~i~l~D~pGl~~~a~~~~~~g~~~ 143 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--------AKIQMLDLPGIIDGAKDGRGRGKQV 143 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--------EEEEEEECGGGCCC-----CHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--------cEEEEEeCCCccCCchhhhHHHHHH
Confidence 57899999999999999999999999999999999999999998763 4899999999999999999999999
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
+.++++||++++|+|+++ +..+++.+..||..+...+..+|.++++||+|..
T Consensus 144 l~~i~~ad~il~vvD~~~--p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 144 IAVARTCNLLFIILDVNK--PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHCSEEEEEEETTS--HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHhcCccccccccCc--cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999999999985 4788899999999988777889999999999974
No 5
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.7e-22 Score=210.80 Aligned_cols=217 Identities=15% Similarity=0.126 Sum_probs=143.6
Q ss_pred eCCceeEEEecCCc----eeccccCcC--cce-eeecCCCCCCCccccchhhh-ccccccccccccccccccCCCCCHHH
Q 012884 190 PVPLGTVVKHKRGK----LFSDLAHPG--DEV-LVARGGRGGISLLEVPENRR-KRMTTLTTNIMRDDTDKGLPNAGKST 261 (454)
Q Consensus 190 ~vPvgtvv~~~~~~----~~~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~~~-~~~~~l~~k~~adVglVG~pNaGKST 261 (454)
++|+.+++||.|.. ...+++++| +.+ +||++|.|...+.+.....- +.....+.....+|++||.|||||||
T Consensus 111 ~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSS 190 (436)
T 2hjg_A 111 KKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSS 190 (436)
T ss_dssp CSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHH
T ss_pred CCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHH
Confidence 57999999998852 345666665 444 89999998766543211100 00000011123589999999999999
Q ss_pred HHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc----hhhcccccccEEE
Q 012884 262 LLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR----NFLRHLRRTRLLV 336 (454)
Q Consensus 262 LlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~----~fl~~i~~advll 336 (454)
|+|+|++.+.. ++++++||++.....+..+ +..+.||||||+.+.....+.+.. ..+.+++++|++|
T Consensus 191 Lin~l~~~~~~~~~~~~gtT~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~l 262 (436)
T 2hjg_A 191 LVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--------QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVA 262 (436)
T ss_dssp HHHHHHTSTTEEEC---------CCEEEEET--------TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHhCCCceeecCCCCceeeeeEEEEEEC--------CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEE
Confidence 99999998875 5889999999888877654 237999999999876554333332 2345788999999
Q ss_pred EEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-----HHHHHHHHHHh---cCCceecccccccH
Q 012884 337 HVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILK---IGCDKVTSETELSS 408 (454)
Q Consensus 337 ~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-----~~~~l~~~l~~---~g~~~~sa~~~~~~ 408 (454)
+|+|++.+.+.++.+.+ ..+.. .++|+++|+||||+.+.++ ..+++.+.+.. ..+.++++.+..++
T Consensus 263 lv~D~~~~~s~~~~~~~-~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v 336 (436)
T 2hjg_A 263 VVLDGEEGIIEQDKRIA-GYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRI 336 (436)
T ss_dssp EEEETTTCCCHHHHHHH-HHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTG
T ss_pred EEEcCCcCCcHHHHHHH-HHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCH
Confidence 99999998888887654 33432 4799999999999986432 12223333332 24567899999999
Q ss_pred HHHHHHHHhhcC
Q 012884 409 EDAVKSLSTEGG 420 (454)
Q Consensus 409 ~e~~~~l~~~~~ 420 (454)
.+.+..++....
T Consensus 337 ~~l~~~i~~~~~ 348 (436)
T 2hjg_A 337 HTLMPAIIKASE 348 (436)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888876553
No 6
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=5e-22 Score=208.29 Aligned_cols=217 Identities=16% Similarity=0.137 Sum_probs=143.5
Q ss_pred eCCceeEEEecCCc----eeccccCcC--cce-eeecCCCCCCCccccchhhh-ccccccccccccccccccCCCCCHHH
Q 012884 190 PVPLGTVVKHKRGK----LFSDLAHPG--DEV-LVARGGRGGISLLEVPENRR-KRMTTLTTNIMRDDTDKGLPNAGKST 261 (454)
Q Consensus 190 ~vPvgtvv~~~~~~----~~~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~~~-~~~~~l~~k~~adVglVG~pNaGKST 261 (454)
++|+.+++||.|.. ...+++++| +.+ ++|++|.|...+.+...... ......+.....+|+++|.|||||||
T Consensus 131 ~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSs 210 (456)
T 4dcu_A 131 KKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSS 210 (456)
T ss_dssp CSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHH
T ss_pred CCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHH
Confidence 57999999998752 345666665 444 89999988766543211110 00001111224578999999999999
Q ss_pred HHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc----chhhcccccccEEE
Q 012884 262 LLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG----RNFLRHLRRTRLLV 336 (454)
Q Consensus 262 LlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg----~~fl~~i~~advll 336 (454)
|+|+|++.+.. ++++++||.+.....+..+ +.+++||||||+++..+...... ...+.++++||++|
T Consensus 211 lin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~l 282 (456)
T 4dcu_A 211 LVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--------QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVA 282 (456)
T ss_dssp HHHHHHTSTTEEECC------CTTSEEEEET--------TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHhCCCccccCCCCCeEEEEEEEEEEEC--------CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEE
Confidence 99999988754 4899999999988887754 24799999999987655433222 23456789999999
Q ss_pred EEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-HHHHHHHHHHHh-------cCCceecccccccH
Q 012884 337 HVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK-------IGCDKVTSETELSS 408 (454)
Q Consensus 337 ~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-e~~~~l~~~l~~-------~g~~~~sa~~~~~~ 408 (454)
+|+|++.+...++.+.+. ++.. .++|+|+|+||||+.+.+ ...+++.+.+.+ ..+.++++.+..++
T Consensus 283 lviD~~~~~~~~~~~~~~-~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 356 (456)
T 4dcu_A 283 VVLDGEEGIIEQDKRIAG-YAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRI 356 (456)
T ss_dssp EEEETTTCCCHHHHHHHH-HHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTG
T ss_pred EEEeCCCCcCHHHHHHHH-HHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCH
Confidence 999999987777665543 4443 479999999999998642 223333333332 34567899999999
Q ss_pred HHHHHHHHhhcC
Q 012884 409 EDAVKSLSTEGG 420 (454)
Q Consensus 409 ~e~~~~l~~~~~ 420 (454)
.+.+..+.....
T Consensus 357 ~~l~~~i~~~~~ 368 (456)
T 4dcu_A 357 HTLMPAIIKASE 368 (456)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988876653
No 7
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=1.8e-20 Score=195.63 Aligned_cols=217 Identities=20% Similarity=0.199 Sum_probs=139.3
Q ss_pred eCCceeEEEecCCc-----ee-ccccCcC--cce-eeecCCCCCCCccccchhh--hcc-c-ccc-ccccccccccccCC
Q 012884 190 PVPLGTVVKHKRGK-----LF-SDLAHPG--DEV-LVARGGRGGISLLEVPENR--RKR-M-TTL-TTNIMRDDTDKGLP 255 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-----~~-~dl~~~g--~~~-i~A~gG~Gg~~~~~~~~~~--~~~-~-~~l-~~k~~adVglVG~p 255 (454)
++|+.+++||.|.. .. .+++++| +.+ +||++|.|...+.+..... ... . .+. +.....+|++||.|
T Consensus 110 ~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~ 189 (439)
T 1mky_A 110 TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRP 189 (439)
T ss_dssp TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECST
T ss_pred CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCC
Confidence 57999999998852 22 5666665 344 8999999876654422110 000 0 000 01123589999999
Q ss_pred CCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-Cccc----chhhccc
Q 012884 256 NAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLG----RNFLRHL 329 (454)
Q Consensus 256 NaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~-~~lg----~~fl~~i 329 (454)
|||||||+|+|++.... ++++++||+++..+.+.++ +..+.+|||||+.+..... +.+. ...+.++
T Consensus 190 gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~--------g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 190 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID--------GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp TSSHHHHHHHHHTSTTEEECCCC------CCEEEEET--------TEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC--------CEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 99999999999998765 4899999999999988764 2478999999996543321 1111 1235678
Q ss_pred ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHH----HHHHHhc---CCceec
Q 012884 330 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSL----TEEILKI---GCDKVT 401 (454)
Q Consensus 330 ~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l----~~~l~~~---g~~~~s 401 (454)
+.+|++++|+|++.+.+.++.+. ...+.. .++|+++|+||||+.+.++ ..+++ .+.+... .+.+++
T Consensus 262 ~~ad~vllv~d~~~~~~~~~~~i-~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 335 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQDQRM-AGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTS 335 (439)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHH-HHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECB
T ss_pred hhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 88999999999998777776543 344443 4799999999999986432 12323 2333322 345789
Q ss_pred ccccccHHHHHHHHHhhcC
Q 012884 402 SETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~ 420 (454)
+.+..++.+.+..+.....
T Consensus 336 A~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 336 ADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999988876543
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=1.4e-19 Score=180.43 Aligned_cols=163 Identities=26% Similarity=0.284 Sum_probs=122.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc---cCCccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---LGKGLG 322 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~---~~~~lg 322 (454)
-.|+++|.||||||||+|+|++.+..+ +++++||++...+.+.... ..+++||||||+.+... .++.+.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~-------~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-------EAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-------TEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC-------CCeEEEEECcCCCccccchhHHHHHH
Confidence 468999999999999999999998765 8899999998888876531 23799999999976431 112233
Q ss_pred chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-Hhc----CC
Q 012884 323 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKI----GC 397 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l-~~~----g~ 397 (454)
..+..+++.+|++|+|+|++.+...++...|.+.+.. .+.|+++|+||+|+....+...+..+.+ ..+ .+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 3456678899999999999998888887776666664 3689999999999983222223322222 223 35
Q ss_pred ceecccccccHHHHHHHHHhhcCc
Q 012884 398 DKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
.++++....++.+.+..+...+..
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcc
Confidence 678999999999999999887754
No 9
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.80 E-value=2.4e-20 Score=192.71 Aligned_cols=113 Identities=38% Similarity=0.617 Sum_probs=64.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCC----C-CCC-----------cccccccEEEecCCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD----P-TLG-----------AEKYSSEATLADLPGL 311 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~----~-~~~-----------~~~~~~~i~liDTPGi 311 (454)
+|++||.||||||||+|+|++.+..+++|||||++++.+.+.+. . ... ...-..++.||||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 58999999999999999999988666999999999999975321 0 000 0000136999999999
Q ss_pred ccccccCCcccchhhcccccccEEEEEEeCCCC-----------CCHhhHHHHHHHHHhc
Q 012884 312 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMY 360 (454)
Q Consensus 312 i~~a~~~~~lg~~fl~~i~~advll~ViDas~~-----------~~~~d~~~l~~eL~~~ 360 (454)
.++++..++++..|+.+++.||++++|+|++.. ++..+++.|..||..+
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~ 141 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW 141 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 998888888999999999999999999999886 6777777777666543
No 10
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=7.9e-19 Score=179.20 Aligned_cols=110 Identities=36% Similarity=0.601 Sum_probs=85.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCC--------Cc-ccccccEEEecCCCCccccccC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEGAHLG 318 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~--------~~-~~~~~~i~liDTPGii~~a~~~ 318 (454)
+|++||.||||||||+|+|++.+..+++|||||++|+.+.+.+.... .+ ......++||||||+.++++.+
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~ 83 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKG 83 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccccc
Confidence 68999999999999999999988778999999999999988764210 00 0001369999999999998888
Q ss_pred CcccchhhcccccccEEEEEEeCCCC----------CCHhhHHHHHHHH
Q 012884 319 KGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL 357 (454)
Q Consensus 319 ~~lg~~fl~~i~~advll~ViDas~~----------~~~~d~~~l~~eL 357 (454)
++++..|+.++++||++++|+|+++. ++..+++.+..||
T Consensus 84 ~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 84 EGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp GGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 89999999999999999999999862 5667777766666
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=8.3e-19 Score=174.70 Aligned_cols=162 Identities=22% Similarity=0.196 Sum_probs=114.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~ 324 (454)
..|++||.||||||||+|+|++.+..+ ++.|.||++...+.+... ..+++||||||+.+..+ .++.+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--------~~~l~l~DTpG~~~~~~~l~~~~~~~ 79 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--------RRQIVFVDTPGLHKPMDALGEFMDQE 79 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--------TEEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--------CcEEEEecCccccchhhHHHHHHHHH
Confidence 358999999999999999999998765 788999998777766532 24899999999975321 11113334
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH-HhcCCceeccc
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIGCDKVTSE 403 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l-~~~g~~~~sa~ 403 (454)
+..+++.+|++|+|+|++++....+. .+.+.+..+. .+.|+++|+||+|+....+.+.+..+.+ ....+.++++.
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~~-~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPEDE-LVARALKPLV---GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHHH-HHHHHHGGGT---TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTT
T ss_pred HHHHHhcCCEEEEEEECCCCCChHHH-HHHHHHHhhc---CCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCC
Confidence 56778999999999999987655543 3345565432 3689999999999986544122222222 11123567788
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
...++.+.+..+...+.
T Consensus 156 ~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 156 DERQVAELKADLLALMP 172 (301)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 88999999999887653
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=6.9e-19 Score=154.98 Aligned_cols=157 Identities=26% Similarity=0.298 Sum_probs=104.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.+|||||||+|+|.+.... ..+++.+|.+.....+..+ +..+.+|||||+.+.......+...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~ 73 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--------RGRFLLVDTGGLWSGDKWEKKIQEKV 73 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET--------TEEEEEEECGGGCSSSSCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC--------CceEEEEECCCCCCccchHHHHHHHH
Confidence 47889999999999999999988754 4778888888777766543 23799999999976432112223345
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceeccccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 405 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~ 405 (454)
...++.+|++++|+|++......+. .+.+++.. .+.|+++|+||+|+.+.++..+++. .+....+.++++...
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQADY-EVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHHH-HHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTTT
T ss_pred HHHHHhCCEEEEEEECCCcccHhHH-HHHHHHHh-----cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEecccC
Confidence 5678899999999999986555443 33344543 3689999999999986543333332 111114678899999
Q ss_pred ccHHHHHHHHHhh
Q 012884 406 LSSEDAVKSLSTE 418 (454)
Q Consensus 406 ~~~~e~~~~l~~~ 418 (454)
.++.+.++.+...
T Consensus 147 ~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 147 RGLEELLEAIWER 159 (161)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHh
Confidence 9999999988753
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=1.3e-18 Score=181.47 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=105.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc--cCCcccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR 323 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~--~~~~lg~ 323 (454)
++|++||.||||||||+|+|++.+.. ++++|++|++...+.+.+. +..+.+|||||+..... ..+.+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~~~~ 73 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--------GKTFKLVDTCGVFDNPQDIISQKMKE 73 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--------TEEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC--------CeEEEEEECCCccccccchHHHHHHH
Confidence 47899999999999999999998765 4899999999998888754 24799999999975321 1122334
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Ccee
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKV 400 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~ 400 (454)
.+..+++.||++|+|+|++.+.+..+.. +.++++. .++|+++|+||+|+.+.. ..+....+..++ +.++
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d~~-i~~~l~~-----~~~p~ilv~NK~D~~~~~--~~~~~~~~~~lg~~~~~~i 145 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKEDES-LADFLRK-----STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPV 145 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHHHH-HHHHHHH-----HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEEC
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEeCCCCcccc--HHHHHHHHHhcCCCCEEEE
Confidence 5667889999999999999877666543 3345553 369999999999986421 122212233444 4568
Q ss_pred cccccccHHHHHHHHHhhc
Q 012884 401 TSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~ 419 (454)
++....++.+.++.+...+
T Consensus 146 SA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eccCCCCHHHHHHHHHHhc
Confidence 8999999999999887655
No 14
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.75 E-value=1.3e-18 Score=178.15 Aligned_cols=111 Identities=36% Similarity=0.606 Sum_probs=88.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCC--------Ccc-----cccccEEEecCCCCcc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GAE-----KYSSEATLADLPGLIE 313 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~--------~~~-----~~~~~i~liDTPGii~ 313 (454)
.+|++||.||||||||+|+|++..+.+++|||||++|+.+.+.+.... ... .....+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 478999999999999999999987778999999999999987653210 000 0123699999999999
Q ss_pred ccccCCcccchhhcccccccEEEEEEeCCCC----------CCHhhHHHHHHHH
Q 012884 314 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL 357 (454)
Q Consensus 314 ~a~~~~~lg~~fl~~i~~advll~ViDas~~----------~~~~d~~~l~~eL 357 (454)
+++.+++++..|+.+++.||++++|+|+++. ++..+++.+..||
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL 135 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETEL 135 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHH
Confidence 9988889999999999999999999999862 5666766655555
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=153.20 Aligned_cols=158 Identities=14% Similarity=0.041 Sum_probs=111.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++........+.+|.+.....+..+.. ...+.+|||||..+ +....
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~~ 75 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE------KVKLQIWDTAGQER-------FRTIT 75 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE------EEEEEEEEETTGGG-------CSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE------EEEEEEEcCCCchh-------hhhhH
Confidence 357899999999999999999987665555666666665555554321 13689999999743 22334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
..+++.+|++++|+|++++.+.+++..|..++.... ...|+++|+||+|+.+.+.. .++....... ..+.++++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (181)
T 3tw8_B 76 STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSA 152 (181)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEEC
Confidence 556788999999999998776777666666666543 46899999999998754221 1222222222 35667899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.+...+
T Consensus 153 ~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 153 KENVNVEEMFNCITELV 169 (181)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887654
No 16
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.75 E-value=4.3e-18 Score=179.76 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=95.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc-chh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-RNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg-~~f 325 (454)
+|+++|.||||||||+|+|++.+.. ++++++||++.....+..+. ..+.||||||+.+....-+.++ ...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--------~~l~liDT~G~~~~~~~ve~~gi~~~ 306 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--------TMFRLTDTAGLREAGEEIEHEGIRRS 306 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC------------------CEEEEETT--------EEEEEEC-------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--------eEEEEEECCCCCcchhHHHHHHHHHH
Confidence 5899999999999999999998654 58999999999888877642 3799999999976432222222 235
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHhcCCceecccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIGCDKVTSET 404 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~~g~~~~sa~~ 404 (454)
+.+++.+|++|+|+|++++.+.++.+.+.+.+.... ++|+++|+||+|+....... +++.+. ....+..+++.+
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~~~~~~l~~~-~~~~~i~vSAkt 381 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAANADALIRAIADG-TGTEVIGISALN 381 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTHHHHHHHHHH-HTSCEEECBTTT
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccchhHHHHHhc-CCCceEEEEECC
Confidence 678899999999999999887765555555555432 79999999999998754321 112221 113567889999
Q ss_pred cccHHHHHHHHHhhcC
Q 012884 405 ELSSEDAVKSLSTEGG 420 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~~ 420 (454)
..++.+.++.+.....
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999887664
No 17
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=4.5e-18 Score=150.82 Aligned_cols=158 Identities=13% Similarity=0.010 Sum_probs=105.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.+|||||..+. .....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~~ 70 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK------KVKLQIWDTAGQERF-------RTITT 70 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC------EEEEEEECCTTGGGT-------SCCCH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEeCCCChhh-------hhhHH
Confidence 47899999999999999999987654344444444444444443311 136899999997432 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceecccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.+++.+|++++|+|++++.+.+.+..|..++..+. ..+.|+++|+||+|+.......++..+.... ..+.++++..
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN 148 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCC
Confidence 56788999999999998766667776766666543 1368999999999995422112222222333 3566788999
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
..++.+.+..+...+
T Consensus 149 ~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 149 DDNVNEIFFTLAKLI 163 (170)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887544
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=155.15 Aligned_cols=160 Identities=15% Similarity=0.093 Sum_probs=115.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++........+.+|.+.....+..+.. ...+.||||||..+ +....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~~ 82 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK------TIKLQIWDTAGQER-------FRTIT 82 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE------EEEEEEEEECCSGG-------GCTTH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE------EEEEEEEECCCcHh-------hhhhH
Confidence 458899999999999999999987765555566666655555554321 13689999999743 22334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
..+++.+|++++|+|+++..+.+.+..|..++..+.. .+.|+++|+||+|+.+.++. .++..+.... ..+.++++
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 160 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 5567889999999999987777777777777776542 37899999999999764322 1222222233 35677899
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
....++.+.++.+...+.
T Consensus 161 ~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999886653
No 19
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.74 E-value=9.3e-18 Score=150.42 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=107.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+.....++.+|.+.....+..+ +..+.+|||||+.+. .....
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~ 73 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--------DKKITFLDTPGHEAF-------TTMRA 73 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--------TEEEEESCCCSSSSS-------SCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--------CceEEEEECCCCHHH-------HHHHH
Confidence 478999999999999999999877655666767766555555443 247899999998543 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-----------c
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----------I 395 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-----------~ 395 (454)
.++..+|++++|+|++++...+.++.+.. +.. .+.|+++|+||+|+.+... +++.+.+.. .
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~-~~~-----~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINH-AKA-----ANVPIIVAINKMDKPEANP--DRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHH-HGG-----GSCCEEEEEETTTSSCSCH--HHHHHHHTTTTCCBTTTTSSE
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHH-HHh-----CCCCEEEEEECccCCcCCH--HHHHHHHHhcCcChhHcCCcc
Confidence 66788999999999988766666665533 322 3689999999999986421 222222222 2
Q ss_pred CCceecccccccHHHHHHHHHhhc
Q 012884 396 GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.++++....++.+.++.+....
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhh
Confidence 355788889999999999887554
No 20
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=4.5e-19 Score=160.74 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=110.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc-chh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-RNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg-~~f 325 (454)
+|++||.+|||||||+|+|++.... +.++++||.+...+.+..+. ..+.+|||||+.+....-+.+. ...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 77 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--------MPLHIIDTAGLREASDEVERIGIERA 77 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--------EEEEEEECCCCSCCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--------eEEEEEECCCcccchhHHHHHHHHHH
Confidence 6889999999999999999988754 58899999888777776542 3689999999965321101111 123
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceeccccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 405 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~ 405 (454)
+.+++.+|++++|+|+++..+.++.. |..++.... ..++|+++|+||+|+...... +.+ .....+.++++.+.
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~-~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~---~~~-~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAE-IWPEFIARL--PAKLPITVVRNKADITGETLG---MSE-VNGHALIRLSARTG 150 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHH-HCHHHHHHS--CTTCCEEEEEECHHHHCCCCE---EEE-ETTEEEEECCTTTC
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHHhc--ccCCCEEEEEECccCCcchhh---hhh-ccCCceEEEeCCCC
Confidence 35678999999999999877665443 344454432 236899999999998542110 000 01234567899999
Q ss_pred ccHHHHHHHHHhhc
Q 012884 406 LSSEDAVKSLSTEG 419 (454)
Q Consensus 406 ~~~~e~~~~l~~~~ 419 (454)
.++.+.++.+...+
T Consensus 151 ~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 151 EGVDVLRNHLKQSM 164 (172)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999987655
No 21
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.74 E-value=4.2e-18 Score=159.17 Aligned_cols=162 Identities=20% Similarity=0.143 Sum_probs=115.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCC--CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-----
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----- 318 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~--~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~----- 318 (454)
..+|+++|.+|||||||+|+|++.+. .+.+++++|.+.....+.... ...+.||||||+.+.....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-------EPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-------SCSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-------CCcEEEEcCCCCCcccCChhhHHH
Confidence 35789999999999999999999863 458889999876655554111 2479999999986532111
Q ss_pred -CcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHh
Q 012884 319 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK 394 (454)
Q Consensus 319 -~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~ 394 (454)
..+...+++....+|++++|+|++.+....+... ..++.. .++|+++|+||+|+....+ ..+.+.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRM-IEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHH-HHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 1122345566667999999999998665554443 355553 3689999999999987644 23444445544
Q ss_pred c---------CCceecccccccHHHHHHHHHhhcC
Q 012884 395 I---------GCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 395 ~---------g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
. .+.++++....++.+.++.+...+.
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 2 3567899999999999999886553
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.9e-17 Score=148.66 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=105.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCC-CceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADY-PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~-pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.+|||||||+|+|++.+.....+ +.++.+.....+..+.. ...+.+|||||..+. ...+
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~~-------~~~~ 77 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV------KVKLQMWDTAGQERF-------RSVT 77 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE------EEEEEEEECCCC--------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE------EEEEEEEeCCCcHHH-------HHHH
Confidence 478999999999999999999877543333 33333333333332210 137899999997432 2334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~s 401 (454)
..+++.+|++++|+|++++.+.+++..|..++..+.. .+.|+++|+||+|+.+.+ +..+.+.+.+ ...+.+++
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 154 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFMETS 154 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEEECC
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEEEe
Confidence 5567889999999999987767777777777765542 478999999999998532 2222332222 24566789
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.+..+...+
T Consensus 155 a~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887654
No 23
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.73 E-value=1.9e-17 Score=148.45 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=103.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++........+.++.+.....+..+.. ....+.+|||||..+ +.....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~-------~~~~~~ 76 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD-----KVATMQVWDTAGQER-------FQSLGV 76 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSS-----CCEEEEEECCC-----------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCC-----cEEEEEEEECCCChH-------hhhhhH
Confidence 57899999999999999999987643332333334444444443211 123789999999743 223344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCChH-----HHHHHHHHHHHhcCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEAR-----DRLQSLTEEILKIGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~--~~~~kp~IvV~NK~Dl~~~~-----e~~~~l~~~l~~~g~~~ 399 (454)
..++.+|++++|+|++++.+.++...|..++..+.. ...+.|+++|+||+|+.... +..+++.+......+.+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 567889999999999987766777666666654321 12478999999999996432 22233332223345678
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.++.++...
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 89999999999999987543
No 24
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.73 E-value=1.2e-17 Score=147.53 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=105.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|++... ...+..|+.......+..+.. ...+.+|||||+.+. ......
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~~~ 70 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQ------QCMLEILDTAGTEQF-------TAMRDL 70 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSC------EEEEEEEEECSSCSS-------TTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCE------EEEEEEEECCChHHH-------HHHHHH
Confidence 688999999999999999998643 234444444333333333211 236899999998542 222334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh---cCCceeccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK---IGCDKVTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~---~g~~~~sa~ 403 (454)
.++.+|++++|+|++++.+.+....+.+++..+.. ..+.|+++|+||+|+.+.++. .++..+.... ..+.++++.
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCC
Confidence 56779999999999987666666666665554321 247999999999999754221 2223333333 346678999
Q ss_pred ccccHHHHHHHHHhh
Q 012884 404 TELSSEDAVKSLSTE 418 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~ 418 (454)
...++.+.++.+...
T Consensus 150 ~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 150 SKINVNEIFYDLVRQ 164 (167)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988754
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.73 E-value=8.3e-18 Score=151.92 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=109.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|++... ...++.|+.+.....+..+.. ...+.||||||..+. ......
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~~ 71 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMRDQ 71 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTE------EEEEEEEECCCC----------CTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCc------EEEEEEEECCCcHHH-------HHHHHH
Confidence 688999999999999999997653 456666665554444443311 125788999997542 223334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceeccccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSETE 405 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~~ 405 (454)
.++.+|++++|+|+++..+.++...+..++..+.. ..+.|+++|+||+|+.......+...+.... ..+.++++...
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 150 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTR 150 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 56679999999999987666777777666665432 2479999999999997542222233333333 45667899999
Q ss_pred ccHHHHHHHHHhhcC
Q 012884 406 LSSEDAVKSLSTEGG 420 (454)
Q Consensus 406 ~~~~e~~~~l~~~~~ 420 (454)
.++.+.+..+...+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887664
No 26
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=9.1e-18 Score=150.49 Aligned_cols=155 Identities=21% Similarity=0.332 Sum_probs=103.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC--Ccccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~--~~lg~~ 324 (454)
.+|+++|.+|||||||+|+|++....++.+|++|.+...+.+.++ +..+.+|||||+.+..... +.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--------GEKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--------TEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--------CcEEEEEECCCcccCCCcchhHHHHHH
Confidence 368999999999999999999887667888998988888777653 2379999999986532110 111222
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~s 401 (454)
+++. ..+|++++|+|+++. +....|..++.. .++|+++|+||+|+....+ ..+++.+.+. ..+.+++
T Consensus 76 ~~~~-~~~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~S 145 (165)
T 2wji_A 76 YIIN-EKPDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLS 145 (165)
T ss_dssp HHHH-HCCSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECB
T ss_pred HHhc-CCCCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEE
Confidence 2221 369999999999863 333334444543 3699999999999864321 1233433332 4567899
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+.+..++.+.++.+.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999887543
No 27
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.73 E-value=6.1e-18 Score=159.85 Aligned_cols=162 Identities=18% Similarity=0.269 Sum_probs=106.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc-ccch-
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-LGRN- 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~-lg~~- 324 (454)
.+|+++|.+|||||||+|+|++.+....+++++|.+.....+... ...+.||||||+.+....... +...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--------LNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--------TEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--------CCeEEEEECCCCcCcccchhhhHHHHH
Confidence 478999999999999999999887666788999988777766543 237999999999654322111 0011
Q ss_pred hhcccccccEEEEEEeCCCCCCHh--hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH----HHHHHHHHHh----
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILK---- 394 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~--d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~----~~~l~~~l~~---- 394 (454)
+...+..+|++|+|+|+++..+.+ ....+...+... ..+.|+++|+||+|+.+.++. .+.+.+....
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV---FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP 178 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC---C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSC
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh---hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCC
Confidence 122356789999999999875543 222333444432 237999999999999764321 1223333333
Q ss_pred cCCceecccccccHHHHHHHHHhhc
Q 012884 395 IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 395 ~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+.++++.+..++.+.+..++..+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEecccCCCHHHHHHHHHHHH
Confidence 3467889999999999999988665
No 28
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.73 E-value=2.1e-17 Score=150.07 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=105.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCC-------------------------------
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTL------------------------------- 294 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~------------------------------- 294 (454)
.+|+++|.+|||||||+|+|++.+.. ..+..|+ .+.....+..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999987643 2222221 22222222222100
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 374 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~N 374 (454)
........+.||||||+.+. ......+++.+|++|+|+|++++.+.+++..|..++..+. ..|+++|+|
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~N 155 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERY-------ASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVAN 155 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGC-------TTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEE
T ss_pred cCccceeEEEEEECCCcHHH-------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEE
Confidence 00000147899999997432 2234556788999999999998777777777767676543 499999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcC--CceecccccccHHHHHHHHHhhc
Q 012884 375 KIDLPEARDRLQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 375 K~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
|+|+.......+++.+.+...+ +.++++....++.+.++.+...+
T Consensus 156 K~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 156 KIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9994322222345555555554 46778889999999999887543
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=2.1e-17 Score=148.51 Aligned_cols=158 Identities=14% Similarity=0.024 Sum_probs=106.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+..+.+.....+..+. ....+.||||||..+ +.....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~~ 79 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND------ATVKFEIWDTAGQER-------YHSLAP 79 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT------EEEEEEEEECCCSGG-------GGGGTH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC------EEEEEEEEeCCCChh-------hhhhhH
Confidence 4789999999999999999998764332222222221222222221 023799999999743 223344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa~ 403 (454)
..++.+|++++|+|++++.+.+....|..++..+. ..+.|+++|+||+|+.+.++. .+++.+.....+ +.++++.
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (181)
T 2efe_B 80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG--NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK 157 (181)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSS
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 56788999999999998766666666666666543 237899999999999754321 233444444444 5678888
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.++..+
T Consensus 158 ~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 158 TATNVKEIFYEIARRL 173 (181)
T ss_dssp SCTTHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988655
No 30
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=1.5e-17 Score=149.01 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=107.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.+|||||..+ +.....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~-------~~~~~~ 74 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH------FVTMQIWDTAGQER-------FRSLRT 74 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE------EEEEEEEECCCCGG-------GHHHHG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCE------EEEEEEEeCCCchh-------hhhhHH
Confidence 47899999999999999999987644333333333333333333210 13789999999743 223344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCceec
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKVT 401 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~--~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~---~~g~~~~s 401 (454)
..++.+|++++|+|+++..+.+++..|..++..+.. ...+.|+++|+||+|+.+.....++..+... ...+.+++
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS 154 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEe
Confidence 567889999999999987766777666666654321 1246899999999999743222233333333 34567889
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+...+
T Consensus 155 a~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887544
No 31
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.72 E-value=2.1e-18 Score=167.75 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=111.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc------CCc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------GKG 320 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~------~~~ 320 (454)
.+|+++|.||||||||+|+|++.+..++++|++|.+...+.+.+. +..+.||||||+.+.... .+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--------~~~~~lvDtpG~~~~~~~~~~~~~~e~ 73 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--------EHLIEITDLPGVYSLVANAEGISQDEQ 73 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--------TEEEEEEECCCCSSCC------CHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--------CeEEEEEeCCCcccccccccCCCHHHH
Confidence 478999999999999999999998778999999999888888754 237999999999664321 111
Q ss_pred ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCC
Q 012884 321 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGC 397 (454)
Q Consensus 321 lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~ 397 (454)
+...++.. +.+|++|+|+|++.. +....+..++.. .++|+++|+||+|+..... ..+.+.+.+. ..+
T Consensus 74 i~~~~~~~-~~~d~vi~VvDas~~---~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~v 143 (256)
T 3iby_A 74 IAAQSVID-LEYDCIINVIDACHL---ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSV 143 (256)
T ss_dssp HHHHHHHH-SCCSEEEEEEEGGGH---HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCE
T ss_pred HHHHHHhh-CCCCEEEEEeeCCCc---hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCE
Confidence 22222211 789999999999873 333333344442 3799999999999865421 1333443332 455
Q ss_pred ceecccccccHHHHHHHHHhh
Q 012884 398 DKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~ 418 (454)
.++++....++.+.++.+...
T Consensus 144 i~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 144 IPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECBGGGTBSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678899999999999998865
No 32
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.72 E-value=1.8e-17 Score=152.60 Aligned_cols=162 Identities=17% Similarity=0.099 Sum_probs=110.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++........+.++.+.....+..+.. ...+.||||||..+. ....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~ 74 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR------LVTMQIWDTAGQERF-------QSLG 74 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSC------EEEEEEEEECSSGGG-------SCSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE------EEEEEEEeCCCcHHH-------HHhH
Confidence 357899999999999999999987654333344444444444443311 137899999997442 2223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCcee
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV 400 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~--~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~---~~g~~~~ 400 (454)
...++.+|++|+|+|++++.+.+++..|..++..+.. ...+.|+++|+||+|+.+.....++..+... ...+.++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET 154 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEEC
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEE
Confidence 4556789999999999987666676666665554321 1136899999999999753222233333332 3456788
Q ss_pred cccccccHHHHHHHHHhhcC
Q 012884 401 TSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~~ 420 (454)
++....++.+.++.+...+-
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 155 SAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999886653
No 33
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.72 E-value=8.4e-18 Score=149.00 Aligned_cols=156 Identities=15% Similarity=0.046 Sum_probs=94.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.+|||||||+|+|++..... .+.+++|..... ..+. ....+.+|||||..+. ....
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~i~D~~g~~~~-------~~~~ 66 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI---VVDG------EEASLMVYDIWEQDGG-------RWLP 66 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE---EETT------EEEEEEEEECC----------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE---EECC------EEEEEEEEECCCCccc-------hhhh
Confidence 478999999999999999999876533 556666664322 2111 1237899999998543 2223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHhc--CCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKI--GCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~~--g~~~~sa 402 (454)
..+++.+|++++|+|++++.+.+....+..++..+.. ..+.|+++|+||+|+.+.++.. ++..+..... .+.++++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 145 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBG
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEecc
Confidence 3456789999999999987777777777666665421 2479999999999997643221 2222222333 4567899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.+...+
T Consensus 146 ~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 146 ALHHNVQALFEGVVRQI 162 (166)
T ss_dssp GGTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887543
No 34
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=1.8e-17 Score=153.14 Aligned_cols=160 Identities=16% Similarity=0.050 Sum_probs=111.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++........+.++.+.....+..+.. ...+.||||||..+. ....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~ 74 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK------TVKLQIWDTAGQERF-------RTIT 74 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE------EEEEEEECCTTTTTT-------TCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEeCCChHHH-------HHHH
Confidence 357899999999999999999987654443444444443344433210 137999999997442 2334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa 402 (454)
..+++.+|++|+|+|++++.+.+++..|..++..+. ....|+++|+||+|+.+.++. .++..+..... .+.++++
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 152 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCT
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeC
Confidence 566788999999999998777777777777776654 236899999999999764221 22233333333 4567888
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
....++.+.+..+...+.
T Consensus 153 ~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 153 LDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 899999999998887663
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=3.2e-17 Score=149.51 Aligned_cols=159 Identities=13% Similarity=0.052 Sum_probs=107.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++.+......+..+.+.....+..+. ....+.||||||..+ +....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~~~ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD------KRIKLQIWDTAGQER-------YRTIT 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT------EEEEEEEEECCSCCS-------SCCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC------eEEEEEEEeCCCcHH-------HhhhH
Confidence 45889999999999999999998764322122111111112222111 023789999999743 23334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa 402 (454)
...++.+|++++|+|+++..+.+++..|..++..+. ..+.|+++|+||+|+.+.++. .++..+..... .+.++++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASA 166 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 566788999999999998777777777777777653 237899999999999753221 12233333333 4567899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.+...+
T Consensus 167 ~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 167 KENINVKQVFERLVDVI 183 (189)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887543
No 36
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.6e-17 Score=150.96 Aligned_cols=160 Identities=16% Similarity=0.007 Sum_probs=107.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++........+..+.+.....+..+. ....+.||||||+.+. .....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 82 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG------NKAKLAIWDTAGQERF-------RTLTP 82 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT------EEEEEEEEEECSSGGG-------CCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECC------eEEEEEEEeCCCchhh-------hhhhH
Confidence 4789999999999999999998764332222222222223333221 0237999999997432 22345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC--Cceecccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSET 404 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g--~~~~sa~~ 404 (454)
.+++.+|++|+|+|++++.+.+++..|..++..+.. ...+|+++|+||+|+.......++..+.....+ +.++++..
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKT 161 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCC
Confidence 567889999999999987666677666666665421 246899999999999643221233334444444 45778899
Q ss_pred cccHHHHHHHHHhhcC
Q 012884 405 ELSSEDAVKSLSTEGG 420 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~~ 420 (454)
..++.+.+..+...+.
T Consensus 162 ~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 162 CDGVQCAFEELVEKII 177 (195)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999886553
No 37
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1.4e-17 Score=154.04 Aligned_cols=158 Identities=14% Similarity=0.015 Sum_probs=109.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.||||||+.+. ...+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~~ 87 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK------KVKLQLWDTAGQERF-------RTITT 87 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTE------EEEEEEECCTTGGGG-------TCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCE------EEEEEEEeCCCcHHH-------HHHHH
Confidence 57899999999999999999987654444444444444444443210 136899999997432 22345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceecccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.+++.+|++++|+|++++.+.+.+..|..++..+.. .+.|+++|+||+|+.......++..+.... ..+.++++..
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN 165 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 567889999999999987666776666666665432 368999999999995422112222222232 3567789999
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
..++.+.+..+...+
T Consensus 166 ~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 166 DDNVNEIFFTLAKLI 180 (213)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887655
No 38
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=4.2e-17 Score=149.09 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=107.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+..+.. ...+.||||||+.+. .....
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~D~~G~~~~-------~~~~~ 84 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGK------QYLLGLYDTAGQEDY-------DRLRP 84 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSC------EEEEEEECCCCSSSS-------TTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCE------EEEEEEEECCCCcch-------hHHHH
Confidence 4789999999999999999997642 355666665444344443211 136899999998543 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------------HHHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-------------~~~l~~~l 392 (454)
.+++.+|++++|+|++++.+.+... .|..++..+. .+.|+++|+||+|+.+..+. .++..+..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 161 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence 5678899999999999876666665 5666666553 37899999999999764211 12222222
Q ss_pred Hhc---CCceecccccccHHHHHHHHHhh
Q 012884 393 LKI---GCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 393 ~~~---g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
... .+.++++.+..++.+.++.+...
T Consensus 162 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 162 KEIGACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 222 56678999999999999888754
No 39
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.72 E-value=1.9e-17 Score=149.26 Aligned_cols=159 Identities=14% Similarity=0.045 Sum_probs=108.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.. ....++.|+.......+..+.. ...+.+|||||+.+. .....
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~~ 72 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQ------EYHLQLVDTAGQDEY-------SIFPQ 72 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTE------EEEEEEEECCCCCTT-------CCCCG
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCE------EEEEEEEeCCCchhh-------hHHHH
Confidence 478999999999999999999655 3455666655444444443211 136799999998543 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+.+..|..++..+.. ..+.|+++|+||+|+.+.++. .++..+.....+ +.++++.
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecC
Confidence 456779999999999987777777766666654321 236899999999999654322 233333344444 5678888
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
...++.+.+..+...+.
T Consensus 152 ~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 152 ENQTAVDVFRRIILEAE 168 (181)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999886653
No 40
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=4.3e-18 Score=156.32 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=105.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++........+..+.+.....+..+.. ...+.||||||..+ +.....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~-------~~~~~~ 93 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK------KIRLQIWDTAGQER-------FNSITS 93 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCe------EEEEEEEeCCCcHH-------HHHHHH
Confidence 47899999999999999999987643333333333333334433210 13689999999743 223345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHH---hcCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL---KIGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~---~~g~~~~sa 402 (454)
..++.+|++|+|+|+++..+.+++..|.+++..+. ..+.|+++|+||+|+.+.++. .++..+... ...+.++++
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeC
Confidence 56788999999999998777777777777777654 236899999999999754221 122222222 234567899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.++.+...+
T Consensus 172 ~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 172 KDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887543
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.72 E-value=1.3e-17 Score=150.73 Aligned_cols=159 Identities=15% Similarity=0.026 Sum_probs=112.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.+|||||+.+ +...+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~~ 76 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK------YVKLQIWDTAGQER-------FRSVT 76 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEeCCCcHH-------HHHHH
Confidence 357899999999999999999987655444455554444444443210 13789999999743 23345
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa 402 (454)
..+++.+|++++|+|++++.+.+.+..|..++..+.. .+.|+++|+||+|+...++. .++..+.....+ +.++++
T Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (186)
T 2bme_A 77 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154 (186)
T ss_dssp HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecC
Confidence 5678889999999999987777777777666665432 47899999999999643221 233333344444 567888
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.++.+...+
T Consensus 155 ~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 155 LTGENVEEAFVQCARKI 171 (186)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999999887654
No 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.72 E-value=9.6e-18 Score=149.06 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=100.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++........+.+|.+.....+..+.. ...+.+|||||..+... .+. .
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~D~~g~~~~~~---~~~---~ 70 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKE------EVTLIVYDIWEQGDAGG---WLQ---D 70 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTE------EEEEEEECCCCC--------------C
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCe------EEEEEEEECCCccccch---hhh---h
Confidence 47889999999999999999976655444444555554454443321 23688999999854311 011 1
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..++.+|++++|+|++++.+.+....+..++..+.+ ..+.|+++|+||+|+.+.++. .++..+..... .+.++++.
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 149 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCc
Confidence 235669999999999987777777777666665432 137999999999999753222 22233333333 45678999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.+...+
T Consensus 150 ~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 150 LHHNTRELFEGAVRQI 165 (169)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999887543
No 43
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=2.1e-17 Score=146.52 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=107.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC--ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~--Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|+++|.+|||||||+|+|.+.... ..+..+++.......+... ...+.+|||||+.+ +...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dt~G~~~-------~~~~ 71 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE--------LHKFLIWDTAGLER-------FRAL 71 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE--------EEEEEEEEECCSGG-------GGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe--------EEEEEEEcCCCchh-------hhcc
Confidence 47899999999999999999987632 2334444443222222111 23789999999843 2233
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~s 401 (454)
...+++.+|++++|+|++++.+.++...|..++..+. ....|+++|+||+|+.+.++. .++........ .+.+++
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETS 149 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 4456788999999999998776777777777777653 246899999999999764322 12233333333 355778
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+...+
T Consensus 150 a~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 150 AKNAININELFIEISRRI 167 (170)
T ss_dssp TTTTBSHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 889999999999887544
No 44
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=1.5e-17 Score=147.76 Aligned_cols=158 Identities=17% Similarity=0.048 Sum_probs=103.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.+|||||..+. .....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 73 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK------RVNLAIWDTAGQERF-------HALGP 73 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC------EEEEEEEECCCC--------------C
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCE------EEEEEEEECCCcHhh-------hhhHH
Confidence 47899999999999999999977543222333333333333433211 136899999997442 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+++..|..++..+. ..+.|+++|+||+|+.+.++. .++..+.....+ +.++++.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1z08_A 74 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML--GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 151 (170)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 45678999999999998766666666666665432 136899999999999753221 233333344444 5678899
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.++..+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 152 QNKGIEELFLDLCKRM 167 (170)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887543
No 45
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.72 E-value=2.3e-17 Score=159.24 Aligned_cols=164 Identities=18% Similarity=0.127 Sum_probs=105.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCc--eeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-Ccccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPF--TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGR 323 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pf--TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~-~~lg~ 323 (454)
.+|++||.||||||||+|+|++.+..+..+++ +|..+..+.+..+ +.+++||||||+.+..... +.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--------KCHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--------TEEEEEEECCSCSSTTHHHHSTTSH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--------CcEEEEEECCCCCCCCCCcHHHHHH
Confidence 37899999999999999999999887766554 7888877777654 2479999999997543322 33333
Q ss_pred hhhccc----ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHH-----HHHHHHH
Q 012884 324 NFLRHL----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL-----QSLTEEI 392 (454)
Q Consensus 324 ~fl~~i----~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~-----~~l~~~l 392 (454)
.+.+.+ +.+|++|+|+|++. ....+...+....+.+.....+.|+|+|.||+|+.+. .+.+ +.++..+
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 333333 88999999999985 4555655555444445544457899999999999753 1222 2345555
Q ss_pred HhcCCcee--ccc-----ccccHHHHHHHHHhhc
Q 012884 393 LKIGCDKV--TSE-----TELSSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~g~~~~--sa~-----~~~~~~e~~~~l~~~~ 419 (454)
..++.... ... ...++.+.+..+...+
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 55554332 111 1356666666555444
No 46
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.72 E-value=1.3e-17 Score=149.95 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=99.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+. ...+..|+.+.....+..+. ....+.+|||||..+. .....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 74 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNG------ATVNLGLWDTAGQEDY-------NRLRP 74 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------------CEEECCCC-CTT-------TTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECC------EEEEEEEEECCCChhh-------hhhHH
Confidence 4789999999999999999997652 34555555433322222211 1135779999998432 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-----------HHHHHHHHHh
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-----------LQSLTEEILK 394 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-----------~~~l~~~l~~ 394 (454)
.+++.+|++++|+|++++.+.+++. .|..++..+. .+.|+++|+||+|+.+..+. .++..+....
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~ 151 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL 151 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH
Confidence 5678899999999999876666665 5667777653 37999999999999765432 1222222222
Q ss_pred c---CCceecccccccHHHHHHHHHhhc
Q 012884 395 I---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 395 ~---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
. .+.++++.+..++.+.++.+....
T Consensus 152 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 456789999999999999887543
No 47
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.72 E-value=2e-17 Score=147.88 Aligned_cols=158 Identities=20% Similarity=0.095 Sum_probs=107.6
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
..+|+++|.+|||||||+|+|++.... ..++.|+. +.....+..+. ....+.||||||..+ +...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~~ 80 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSG------QKIKLQIWDTAGQER-------FRAV 80 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETT------EEEEEEEEECTTGGG-------TCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECC------eEEEEEEEECCCChH-------hhhh
Confidence 357899999999999999999987642 23332221 11122222211 013789999999743 2334
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~s 401 (454)
...+++.+|++++|+|+++..+.+++..|..++..+.. .+.|+++|+||+|+.+.++. .+++.+.....+ +.+++
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEAS 158 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 55667889999999999987777777777777765532 36899999999999753221 233444444444 56788
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+...+
T Consensus 159 a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 889999999998887543
No 48
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.71 E-value=2.7e-17 Score=150.59 Aligned_cols=156 Identities=15% Similarity=0.056 Sum_probs=107.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+. ...+..|+.......+..+.. ...+.||||||..+. .....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~ 89 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNE------EFILHLWDTAGQEEY-------DRLRP 89 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGGG-------TTTGG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCE------EEEEEEEECCCcHHH-------HHHhH
Confidence 4789999999999999999998763 344555554433333332211 125799999997432 23344
Q ss_pred cccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--H-HHHHHHHHHHHhcC---Cce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA--R-DRLQSLTEEILKIG---CDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~-e~~~~l~~~l~~~g---~~~ 399 (454)
..++.+|++++|+|+++..+.+++ ..|..++..+. .+.|+++|+||+|+.+. . ...++..+.....+ +.+
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIE 166 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEE
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEE
Confidence 567889999999999987666665 55666666553 46899999999999752 1 11223333333333 668
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.++.+...+
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 167 ASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 89999999999999987654
No 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=152.57 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=104.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||+++|++.. ....++.|+.+.....+..+.. ...+.||||||+.+. .....
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~ 86 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGR------PVRLQLCDTAGQDEF-------DKLRP 86 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTE------EEEEEEEECCCSTTC-------SSSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCE------EEEEEEEECCCCHHH-------HHHhH
Confidence 478999999999999999999765 3456667766554444433210 126789999998543 12233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----------------HHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSLT 389 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----------------e~~~~l~ 389 (454)
.+++.+|++++|+|++++.+.++.. .|..++..+. .+.|+++|+||+|+.... +..+.+.
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA 163 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH
Confidence 4678899999999999877666665 5666676653 379999999999997532 1122222
Q ss_pred HHHHhcCCceecccccccHHHHHHHHHhhc
Q 012884 390 EEILKIGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 390 ~~l~~~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+....+.++++.+..++.+.++.+....
T Consensus 164 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 164 EEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 222222457789999999999999887544
No 50
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=1.3e-17 Score=147.62 Aligned_cols=156 Identities=14% Similarity=0.042 Sum_probs=104.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|.+........+.++.+.....+..+. ....+.+|||||..+. .....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~~ 72 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND------EDVRLMLWDTAGQEEF-------DAITK 72 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT------EEEEEEEECCTTGGGT-------TCCCH
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC------EEEEEEEEcCCCcHhH-------HHHHH
Confidence 4788999999999999999998654322222222233233333221 0137899999997432 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..++.+|++++|+|++++.+.++...+..++..+. .+.|+++|+||+|+.+.++. .+++.+..... .+.++++.
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1z2a_A 73 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVK 149 (168)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecC
Confidence 55678999999999998766666666666665443 47899999999999753221 22333333333 45678888
Q ss_pred ccccHHHHHHHHHhh
Q 012884 404 TELSSEDAVKSLSTE 418 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~ 418 (454)
...++.+.++.+...
T Consensus 150 ~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEK 164 (168)
T ss_dssp TTBSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999888754
No 51
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=1.3e-17 Score=146.92 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=106.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|.+.+. ...++.|+.......+..+.. ...+.+|||||..+. .....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~D~~G~~~~-------~~~~~ 70 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQEDY-------AAIRD 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCC---C-------HHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCE------EEEEEEEECCCcchh-------HHHHH
Confidence 4789999999999999999998653 345555555444333333210 136899999997432 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+....+..++..+.. ..++|+++|+||+|+.+.++. .++..+..... .+.++++.
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCC
Confidence 556789999999999987666666666666654431 237899999999999754221 23334444433 45678889
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.+....
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887543
No 52
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=1.8e-17 Score=151.57 Aligned_cols=158 Identities=16% Similarity=0.020 Sum_probs=106.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.||||||..+. .....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~ 88 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGK------QIKLQIWDTAGQESF-------RSITR 88 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTE------EEEEEEECCTTGGGT-------SCCCH
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEECCCchhh-------hhhHH
Confidence 47899999999999999999987654433333333333333333210 137899999997432 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+++..|..++..+. ..+.|+++|+||+|+.+.++. .++..+..... .+.++++.
T Consensus 89 ~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 89 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 56778999999999998777777777777776543 237899999999999753221 22233333333 45678999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.+..++..+
T Consensus 167 ~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 167 TACNVEEAFINTAKEI 182 (191)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887554
No 53
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=2.7e-17 Score=163.52 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=113.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCc-ccc-ccCCcccch
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGA-HLGKGLGRN 324 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii-~~a-~~~~~lg~~ 324 (454)
.|++||.||||||||+|+|++.+..+ ++.++||++...+.+... ..++.++||||+. +.. ..++.+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--------~~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--------AYQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--------TEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--------CeeEEEEECcCCCccchhhHHHHHHHH
Confidence 68999999999999999999987654 778899988877776543 2479999999996 211 111123334
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-hcCC---cee
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGC---DKV 400 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-~~g~---~~~ 400 (454)
....++.+|++++|+|++. ....+. .+.+.+.. .++|.++|+||+|+....+.+.+..+.+. .+++ .++
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~-~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDE-MVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHH-HHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHH-HHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 5677899999999999987 444443 33344542 37999999999999873333333333343 3443 456
Q ss_pred cccccccHHHHHHHHHhhcC
Q 012884 401 TSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~~ 420 (454)
++....++.+.+..+...+.
T Consensus 155 SA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHhCC
Confidence 77788999999999886653
No 54
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.71 E-value=3.9e-17 Score=149.22 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=103.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||+++|++.+....+|..| .......+... ...+.||||||+.+. .....
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t-~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~ 81 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT-VGYNVETFEKG--------RVAFTVFDMGGAKKF-------RGLWE 81 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCC-SSEEEEEEEET--------TEEEEEEEECCSGGG-------GGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccc-cceeEEEEEeC--------CEEEEEEECCCCHhH-------HHHHH
Confidence 478999999999999999999876544233322 22222233322 247999999998542 23344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhc------CCCCCCCCEEEEEeCCCCCChHHHHHHHHHHH------H-
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY------NPDYLERPFIVVLNKIDLPEARDRLQSLTEEI------L- 393 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~------~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l------~- 393 (454)
.+++.+|++|+|+|+++..+.+....+...+... .+...+.|+++|+||+|+..... .+++.+.+ .
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-AAELVEILDLTTLMGD 160 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-HHHHHHHHTHHHHHTT
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-HHHHHHHhcchhhccC
Confidence 5678899999999999887777665555444321 11112789999999999987521 12222222 1
Q ss_pred -hcCCceecccccccHHHHHHHHHhhc
Q 012884 394 -KIGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 394 -~~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
...+.++++....++.+.++.+...+
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 12356789999999999999988655
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=3.5e-17 Score=150.07 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=110.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC--CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~--~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|+++|.+|||||||+|+|++... ...+..++|.......+... ...+.||||||..+ +...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~~~~ 88 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE--------LHKFLIWDTAGQER-------FHSL 88 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSS--------EEEEEEEEECCSGG-------GGGG
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCE--------EEEEEEEcCCCchh-------hHhh
Confidence 4789999999999999999998763 23445555543322222111 23799999999743 2233
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--Cceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~~g--~~~~s 401 (454)
....++.+|++++|+|+++..+.+.+..|..++..+. ..+.|+++|+||+|+.+.++ ..+++.+.....+ +.+++
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECB
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 4456788999999999998877777777777777654 23689999999999975322 1234444444444 45788
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+...+
T Consensus 167 a~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQI 184 (192)
T ss_dssp TTTTBSHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 889999999999998655
No 56
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=150.20 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=107.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++....+..+. +|.......+.++ +..+.||||||..+ +...+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~-------~~~~~~ 85 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSS--------SLSFTVFDMSGQGR-------YRNLWE 85 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECS--------SCEEEEEEECCSTT-------TGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEEC--------CEEEEEEECCCCHH-------HHHHHH
Confidence 4789999999999999999998764343333 3444444455443 23799999999743 233345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCChHHHHHHHHHHHH--h-----cCC
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY--LERPFIVVLNKIDLPEARDRLQSLTEEIL--K-----IGC 397 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~--~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~-----~g~ 397 (454)
.+++.+|++++|+|+++..+.++...+..++.... .. .++|+++|+||+|+.+... .+++.+.+. . ..+
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPWHI 163 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEEE
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCceEE
Confidence 66788999999999998665666555544444321 11 4789999999999976422 234444442 1 235
Q ss_pred ceecccccccHHHHHHHHHhhc
Q 012884 398 DKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.++++....++.+.++.+...+
T Consensus 164 ~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 164 CASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC
T ss_pred EEccCCCCcCHHHHHHHHHHHH
Confidence 6789999999999999987654
No 57
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=2.9e-17 Score=145.29 Aligned_cols=156 Identities=13% Similarity=0.050 Sum_probs=104.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc--cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I--a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|+++|.+|||||||+|+|++.+... .+..+++.... .+..+. ....+.+|||||+.+ +...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~D~~G~~~-------~~~~ 71 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ--TVCLDD------TTVKFEIWDTAGQER-------YHSL 71 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE--EEEETT------EEEEEEEEEECCSGG-------GGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE--EEEECC------EEEEEEEEeCCCcHH-------hhhh
Confidence 478899999999999999999765432 22222332222 122111 023789999999743 2233
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~s 401 (454)
...+++.+|++++|+|++++.+.++...+..++..+. ....|+++|+||+|+.+.++. .++..+.....+ +.+++
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA--SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 4556788999999999998766666666666666543 236899999999999753221 233333444444 46688
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+...+
T Consensus 150 a~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TTTCTTHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 899999999999987544
No 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=1.6e-17 Score=146.91 Aligned_cols=157 Identities=14% Similarity=0.015 Sum_probs=104.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|.+.+......+.++.+.....+..+. ....+.+|||||..+. ......
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~-------~~~~~~ 71 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE------HTVKFEIWDTAGQERF-------ASLAPX 71 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------GGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCChhh-------hhhhhh
Confidence 688999999999999999998764322222222222222332221 0237899999997432 233455
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh---HHHH-HHHHHHHHh--cCCceec
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDRL-QSLTEEILK--IGCDKVT 401 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~---~e~~-~~l~~~l~~--~g~~~~s 401 (454)
.++.+|++++|+|++++.+.++...|..++..+. ..+.|+++|+||+|+.+. ++.. ++..+.... ..+.+++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1ek0_A 72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETS 149 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 6788999999999998766677766666666543 247899999999999753 1111 222222223 3456789
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+...+
T Consensus 150 a~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 150 AKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp TTTCTTHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987543
No 59
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.71 E-value=2.3e-17 Score=147.38 Aligned_cols=158 Identities=13% Similarity=0.048 Sum_probs=108.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.+|||||..+. ...+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~~-------~~~~~ 81 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR------TVRLQLWDTAGQERF-------RSLIP 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGGG-------GGGSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCe------EEEEEEEECCCcHHH-------HHHHH
Confidence 47899999999999999999977654444455555554444443311 137899999997432 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
.+++.+|++++|+|++++.+.+....+..++..+. ..+.|+++|+||+|+.+.++. .++....... ..+.++++.
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 56778999999999998766666666666665432 136899999999999754221 2223333333 345678889
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.+...+
T Consensus 160 ~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTBSHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887544
No 60
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=9.7e-18 Score=151.46 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=85.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+++|++........|.++.+.....+..+.. ...+.||||||..+. ....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~ 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK------RIKLQIWDTAGQERF-------RTIT 74 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTE------EEEEEEEEC----------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEcCCCChhh-------hhhH
Confidence 357899999999999999999976543333343444443334433210 137899999998542 2223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
...++.+|++++|+|++++.+.+.+..|..++..+. ..+.|+++|+||+|+.+.++. .++..+.... ..+.++++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 152 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeC
Confidence 456778999999999998766667666666666543 236899999999999753221 2223333333 34567889
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.+..+...+
T Consensus 153 ~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 153 KANINVENAFFTLARDI 169 (183)
T ss_dssp ---CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887554
No 61
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.71 E-value=6.2e-17 Score=146.87 Aligned_cols=157 Identities=23% Similarity=0.223 Sum_probs=109.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc------C
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------G 318 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~------~ 318 (454)
..+|+++|.+|||||||+|+|++.+.. ..+.+++|........ ..++.+|||||+...... -
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-----------NSKYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-----------TTTEEEEECCCBSSSCCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-----------CCcEEEEECCCCccccCChhhHHHH
Confidence 357899999999999999999988743 3677777776544333 237899999997432111 0
Q ss_pred CcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHHHHhc
Q 012884 319 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKI 395 (454)
Q Consensus 319 ~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~---~~~l~~~l~~~ 395 (454)
..+...+++....+|++++|+|++......+... ..++.. .+.|+++|+||+|+.+..+. .+++.+.+...
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~-~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMM-VEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH-HHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHH-HHHHHH-----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 1122334555567799999999987665555543 345554 26999999999999865332 33444444442
Q ss_pred ---CCceecccccccHHHHHHHHHhhc
Q 012884 396 ---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 ---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.++++....++.+.++.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 466789999999999999987544
No 62
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=152.48 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=106.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+++|++........+..+.+.....+.++.. ...+.||||||..+ +....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~-------~~~~~ 95 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK------RVKLQIWDTAGQER-------FRTIT 95 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTE------EEEEEEECCTTCGG-------GHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCE------EEEEEEEECCCcHh-------HHHHH
Confidence 358899999999999999999976532211111122222333333210 13799999999843 22234
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcCC---ceec
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGC---DKVT 401 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~~g~---~~~s 401 (454)
...++.+|++++|+|+++..+.+++..|..++..+. ..+.|+++|+||+|+.+.++ ..+++.+.....++ .+++
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (201)
T 2hup_A 96 QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS 173 (201)
T ss_dssp HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe
Confidence 456788999999999998776777777777776653 24689999999999975321 12334444444444 6789
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+.+..++.+.+..+...+
T Consensus 174 A~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 174 AKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 63
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=144.99 Aligned_cols=159 Identities=14% Similarity=0.055 Sum_probs=98.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.+|||||||+|+|++..... .+.+++|... ..+..+. ....+.+|||||+.... .....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~D~~g~~~~~-----~~~~~ 71 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE--RTLTVDG------EDTTLVVVDTWEAEKLD-----KSWSQ 71 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE--EEEEETT------EEEEEEEECCC------------CHHH
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE--EEEEECC------EEEEEEEEecCCCCccc-----hhhhH
Confidence 478999999999999999999876533 3333333322 2222221 01368999999985420 11112
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
...++.+|++++|+|+++..+.+....|..++..+.. ..++|+++|+||+|+.+.++. .++....... ..+.++++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEec
Confidence 2345679999999999987767777767666665421 237999999999999764221 1222222222 34678899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.+....
T Consensus 151 ~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 64
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.7e-17 Score=152.41 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=110.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+++|++........+..+.+.....+..+.. ...+.||||||..+ +....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~-------~~~~~ 92 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE------KVKLQIWDTAGQER-------FRSIT 92 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE------EEEEEEEEECCSGG-------GHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCcHH-------HHHHH
Confidence 458899999999999999999987644333343334433334433210 13789999999743 23334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
..+++.+|++++|+|+++..+.+.+..|..++..+. ....|+++|+||+|+.+.++. .++..+.... ..+.++++
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 170 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYA--SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 170 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 566788999999999998777777777777776654 236899999999999753221 1222222222 45667899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.+..+...+
T Consensus 171 ~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 171 KESDNVEKLFLDLACRL 187 (201)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887554
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=2.6e-17 Score=148.17 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=109.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|.+.+. ...++.|+.+.....+..+.. ...+.||||||+.+ +.....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~-------~~~~~~ 84 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQED-------YAAIRD 84 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTC-------CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCE------EEEEEEEECCCCcc-------cHHHHH
Confidence 4789999999999999999997653 355666665544443433210 12689999999743 222344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+....|..++..+.. ..++|+++|+||+|+.+.++. .+++.+.....+ +.++++.
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 163 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCC
Confidence 556789999999999987666666666666655432 237899999999999754221 334444455444 4678888
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.+....
T Consensus 164 ~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 164 TRANVDKVFFDLMREI 179 (187)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887554
No 66
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=4.3e-18 Score=177.41 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=98.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccc-cCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~-~~~~lg~~ 324 (454)
.+|++||.||||||||+|+|++.+..+ .++|++|++...+.+.+. +..+.||||||+..... ..+.+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~~~~ 75 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--------NYDFNLIDTGGIDIGDEPFLAQIRQQ 75 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC--------SSCCEEEC---------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC--------CceEEEEECCCCCCcchhHHHHHHHH
Confidence 478999999999999999999987654 889999999888877654 24799999999963321 11123334
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcC---Cceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g---~~~~s 401 (454)
+..+++.||++|+|+|++.+.+..+.. +.+.++. .++|+++|+||+|+....+. +.+ +..++ +.+++
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d~~-~~~~l~~-----~~~pvilv~NK~D~~~~~~~---~~~-~~~lg~~~~~~iS 145 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAADEE-VAKILYR-----TKKPVVLAVNKLDNTEMRAN---IYD-FYSLGFGEPYPIS 145 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHTT-----CCSCEEEEEECCCC-----C---CCS-SGGGSSCCCEECB
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECccCccchhh---HHH-HHHcCCCCeEEEe
Confidence 566788999999999999887766644 3344542 47999999999998754221 111 12333 45688
Q ss_pred ccccccHHHHHHHHHhhcC
Q 012884 402 SETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~ 420 (454)
+....++.+.++.+...+.
T Consensus 146 A~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGG
T ss_pred CcCCCChHHHHHHHHHhcC
Confidence 9999999999999886653
No 67
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.70 E-value=8.9e-18 Score=150.52 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=105.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......|.++.+.....+..+.. ....+.+|||||..+. .....
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~~Dt~G~~~~-------~~~~~ 74 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN-----LNVTLQIWDIGGQTIG-------GKMLD 74 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTT-----EEEEEEEEECTTCCTT-------CTTHH
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCCccc-------cchhh
Confidence 47899999999999999999976532111111122333333333210 0137999999997432 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
.+++.+|++++|+|++++.+.+++..|..++..+.......| +++|+||+|+.+.++. .++..+.... ..+.++++
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSA 154 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 567889999999999987777777777776765421112456 7899999999753211 1222223333 34567889
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.++..+
T Consensus 155 ~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 155 KTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999988654
No 68
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=2.9e-17 Score=152.43 Aligned_cols=158 Identities=18% Similarity=0.108 Sum_probs=110.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+. ..+|..|+.+.....+..+.. ...+.||||||+.+. .....
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~ 75 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQ------IVNLGLWDTAGQEDY-------SRLRP 75 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSC------EEEEEEECCCCCCCC-------CC--C
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCE------EEEEEEEECCCcHHH-------HHHHH
Confidence 4789999999999999999997653 345555655444434433211 137899999998542 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---------HHHHHHHHHhc-
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---------LQSLTEEILKI- 395 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~---------~~~l~~~l~~~- 395 (454)
.+++.+|++|+|+|++++.+.+++. .|..++..+. .+.|+++|+||+|+.+..+. .++..+.....
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG 152 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence 4678899999999999876666664 5667777654 37999999999999764331 22333333333
Q ss_pred --CCceecccccccHHHHHHHHHhhcCc
Q 012884 396 --GCDKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 396 --g~~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
.+.++++.+..++.+.++.+...+..
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 153 AAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 45778999999999999998876643
No 69
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=2.4e-17 Score=148.18 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=103.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+... +..|+.+.....+..+. ....+.+|||||+.+ .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG------QTHLVLIREEAGAPD------------A 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETT------EEEEEEEEECSSSCC------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECC------EEEEEEEEECCCCch------------h
Confidence 378999999999999999999876432 33333222222333221 013689999999843 2
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCC--h----HHHHHHHHHHHHhcCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPE--A----RDRLQSLTEEILKIGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~-~~~~kp~IvV~NK~Dl~~--~----~e~~~~l~~~l~~~g~~~ 399 (454)
.+++.+|++++|+|++++.+.+++..|.+++..+.. ...+.|+++|+||+|+.. . .+..+++...+....+.+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 345679999999999987777777776555654321 124689999999999942 1 222333333333345678
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.+..+...+
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHH
Confidence 99999999999999887554
No 70
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.70 E-value=4.7e-17 Score=148.43 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=100.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCC--CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-----
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----- 318 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~--~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~----- 318 (454)
..+|+++|.+|||||||+|+|++.+ ..+.+.+++|.+.....+ +.++.+|||||+.......
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-----------NDELHFVDVPGYGFAKVSKSEREA 91 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-----------TTTEEEEECCCBCCCSSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-----------CCcEEEEECCCCCccccCHHHHHH
Confidence 4578999999999999999999875 234677777776544333 1379999999975432110
Q ss_pred -CcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHHHHh
Q 012884 319 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILK 394 (454)
Q Consensus 319 -~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~---~~~l~~~l~~ 394 (454)
..+...+++....+|++++|+|++.+.+..+...+ .++.. .+.|+++|+||+|+.+.++. .+++.+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 165 (195)
T 1svi_A 92 WGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMY-EFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI 165 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH-HHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc
Confidence 11122344444556999999999988777765543 44543 36899999999999876443 2333333432
Q ss_pred ---cCCceecccccccHHHHHHHHHhh
Q 012884 395 ---IGCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 395 ---~g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
..+.++++....++.+.++.+...
T Consensus 166 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 166 DPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 235678888999999999888754
No 71
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=153.48 Aligned_cols=160 Identities=17% Similarity=0.079 Sum_probs=110.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|++||.+|||||||+++|++.......++.+|.+.....+..+.. ...+.+|||||..+.. . ....
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~Dt~g~~~~~----~--~~~~ 91 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKE------EVTLVVYDIWEQGDAG----G--WLRD 91 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTE------EEEEEEECCCCCSGGG----H--HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCE------EEEEEEEecCCCccch----h--hhHH
Confidence 47899999999999999999876555555666666555555543321 1368899999984321 0 0112
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+.+..|..++..+.. ....|+++|+||+|+.+.++. .++..+.... ..+.++++.
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence 235679999999999987777777777777765432 136899999999999753221 2222222233 346788999
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...++.+.++.+...+
T Consensus 171 ~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988655
No 72
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=151.88 Aligned_cols=159 Identities=14% Similarity=0.032 Sum_probs=106.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+.. ..+..|+.......+..+.. ...+.||||||..+. .....
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~~ 90 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKD------EFHLHLVDTAGQDEY-------SILPY 90 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----------CEEEEEEEECCCCTT-------CCCCG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCE------EEEEEEEECCCccch-------HHHHH
Confidence 57899999999999999999987644 44555554433333332211 236899999997543 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+.+..|..++..+.. ..++|+++|+||+|+....+. .++..+.... ..+.++++.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 169 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCC
Confidence 567789999999999987667777766666654321 236899999999999754321 1222222222 345678899
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
...++.+.+..+...+.
T Consensus 170 ~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999886653
No 73
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.70 E-value=5.6e-17 Score=146.45 Aligned_cols=157 Identities=17% Similarity=0.100 Sum_probs=106.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.. ....+..|+.......+..+.. ...+.+|||||..+. .....
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 84 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI-FVDDYDPTIEDSYLKHTEIDNQ------WAILDVLDTAGQEEF-------SAMRE 84 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTE------EEEEEEEECCSCGGG-------CSSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceeEEEEEeCCc------EEEEEEEECCCchhh-------HHHHH
Confidence 478999999999999999999753 2344555544433333333211 125778999997432 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 402 (454)
.+++.+|++++|+|++++.+.+.+..|..++..+.. ..+.|+++|+||+|+.+.+ +..+++.+.+. ..+.++++
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa 162 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSA 162 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEBC
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEecc
Confidence 456779999999999987667777666666644221 2478999999999997532 22333333332 45677888
Q ss_pred c-ccccHHHHHHHHHhhc
Q 012884 403 E-TELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~-~~~~~~e~~~~l~~~~ 419 (454)
. ...++.+.++.++..+
T Consensus 163 ~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SSSCBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 8 8899999999887543
No 74
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=2.5e-17 Score=150.18 Aligned_cols=159 Identities=17% Similarity=0.007 Sum_probs=104.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+......+..+.+.....+..+.. ...+.||||||..+.. . ....
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~~---~---~~~~ 88 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE------RIKIQLWDTAGQERFR---K---SMVQ 88 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE------EEEEEEEECCCSHHHH---T---TTHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCE------EEEEEEEECCCchhhh---h---hhhH
Confidence 57899999999999999999976543322333333333333332210 1378999999974321 0 2234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..++.+|++|+|+|+++..+.+.+..|..++..+.. ..+.|+++|+||+|+.+.++. .++..+..... .+.++++.
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 167 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSS
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCC
Confidence 456789999999999987666677666666665421 247899999999999754221 12222333333 45677888
Q ss_pred cc---ccHHHHHHHHHhh
Q 012884 404 TE---LSSEDAVKSLSTE 418 (454)
Q Consensus 404 ~~---~~~~e~~~~l~~~ 418 (454)
.. .++.+.+..++..
T Consensus 168 ~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 168 NPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp SGGGGSCHHHHHHHHC--
T ss_pred cCCcccCHHHHHHHHHHH
Confidence 88 8899999888643
No 75
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=3.7e-17 Score=167.07 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=105.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc---cch
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL---GRN 324 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l---g~~ 324 (454)
.|+++|.||||||||+|+|++....+.+++|+|+++..+.+.++. ..+.++||||++.... ..+ ...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--------~~v~l~DT~G~i~~lp--~~lve~f~~ 250 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--------RKIMLVDTVGFIRGIP--PQIVDAFFV 250 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--------EEEEEEECCCBCSSCC--GGGHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--------EEEEEEeCCCchhcCC--HHHHHHHHH
Confidence 489999999999999999999887668999999999999887642 3789999999865311 111 123
Q ss_pred hhcccccccEEEEEEeCCCCC--CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHHHHHhc-----
Q 012884 325 FLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKI----- 395 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~--~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~l~~~l~~~----- 395 (454)
++..+..+|++++|+|++++. ..+.+..+.+.+..+. ..++|+|+|+||+|+.... +..+.+......+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 456788999999999998764 3444555555565543 2478999999999997642 1112221112222
Q ss_pred CCceecccccccHHHHHHHHHhhc
Q 012884 396 GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.++++.+..++.+.++.+....
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHh
Confidence 346678889999999988877544
No 76
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.70 E-value=3e-17 Score=151.10 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=106.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++.+......+..+.+.....+..+. ....+.||||||+.+ +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND------KRIKLQIWDTAGLER-------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGG-------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC------eEEEEEEEECCCchh-------hcchH
Confidence 35789999999999999999998764322112111111122222211 023789999999843 23335
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
..+++.+|++|+|+|++++.+.+.+..|..++..+. ..+.|+++|+||+|+.+.++. .++..+.... ..+.++++
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASA 152 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEEC
Confidence 567788999999999998766677777777776653 237899999999999764221 1222222333 34567888
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.+..+...+
T Consensus 153 ~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 153 KDNINVKQTFERLVDVI 169 (203)
T ss_dssp TTTBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887654
No 77
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=6.7e-17 Score=148.49 Aligned_cols=151 Identities=24% Similarity=0.224 Sum_probs=105.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+.. .+ .+|..+....+.++. ..+.+|||||+.+. ...+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~~~ 85 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN--------IKFTTFDLGGHIQA-------RRLWK 85 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT--------EEEEEEECCCSGGG-------TTSGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC--------EEEEEEECCCCHHH-------HHHHH
Confidence 47899999999999999999986642 22 234444455555432 37999999998543 12234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh------------
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------------ 394 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~------------ 394 (454)
..++.+|++++|+|++++.+.++...+..++.... ...+.|+++|+||+|+.+. ...+++.+.+..
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEGQ 163 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCSS
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCcccccccccccc
Confidence 45678999999999998877776666555554321 1247999999999999763 112344444332
Q ss_pred --cCCceecccccccHHHHHHHHHh
Q 012884 395 --IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 395 --~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+.++++.+..++.+.++.++.
T Consensus 164 ~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 164 RPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ceEEEEEeECCcCCCHHHHHHHHHh
Confidence 23567899999999999988864
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.70 E-value=2.9e-17 Score=152.59 Aligned_cols=155 Identities=18% Similarity=0.130 Sum_probs=108.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+..+.. ...+.||||||+.+. .....
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 96 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK------PVNLGLWDTAGLEDY-------DRLRP 96 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-C------EEEEEEEEECCSGGG-------TTTGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCE------EEEEEEEECCCchhh-------HHHHH
Confidence 4789999999999999999997543 355666666555444444321 125679999998432 23344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-------------HHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~-------------~l~~~l 392 (454)
.+++.+|++++|+|++++.+.++.. .|..++..+. .++|+++|+||+|+....+..+ +.....
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHH
Confidence 5678899999999999877777765 5666676653 4799999999999986543221 122223
Q ss_pred HhcC---CceecccccccHHHHHHHHHhh
Q 012884 393 LKIG---CDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 393 ~~~g---~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
...+ +.++++.+..++.+.++.+.+.
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 174 KEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 3333 5678999999999999888743
No 79
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=149.72 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=111.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++... ...++.|+.+.....+..+.. ...+.||||||..+. .....
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~~ 80 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE------EVQIDILDTAGQEDY-------AAIRD 80 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTCC-------HHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCE------EEEEEEEcCCChhhh-------HHHHH
Confidence 4789999999999999999997663 456666666554444443211 126899999997432 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..++.+|++++|+|+++..+.+....|..++..+.. ..+.|+++|+||+|+.+..+. .+++.+..... .+.++++.
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence 456779999999999987666666666666665432 237999999999999764221 23344444433 45678899
Q ss_pred ccccHHHHHHHHHhhcC
Q 012884 404 TELSSEDAVKSLSTEGG 420 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~~ 420 (454)
+..++.+.+..+.....
T Consensus 160 ~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 160 TRANVDKVFFDLMREIR 176 (206)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998886653
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=4.9e-17 Score=147.90 Aligned_cols=158 Identities=19% Similarity=0.134 Sum_probs=103.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++... ...+..|+.+.....+..+.. ...+.||||||..+. .....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~~ 87 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMRD 87 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCC----------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCE------EEEEEEEECCChHHH-------HHHHH
Confidence 3788999999999999999997643 344555554444334433210 125899999997532 22234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceecccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~ 404 (454)
..++.+|++++|+|+++..+.+++..|..++..+.. ..+.|+++|+||+|+.......+++.+.... ..+.++++..
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 166 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKT 166 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 557789999999999987666777766666665432 1368999999999997532122333333333 3466788899
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
..++.+.+..+...+
T Consensus 167 ~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 167 RQGVEDAFYTLVREI 181 (190)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887554
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2e-17 Score=146.57 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=101.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|++...... +..|+-......+..+. ....+.+|||||+.+. ......
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~-------~~~~~~ 70 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDK------SICTLQITDTTGSHQF-------PAMQRL 70 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETT------EEEEEEEEECCSCSSC-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECC------EEEEEEEEECCCchhh-------HHHHHH
Confidence 688999999999999999998654221 11111111111122111 0136899999998432 223444
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|++++|+|++++.+.++...+..++..+.....+.|+++|+||+|+.+.++. .++....... ..+.++++..
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 150 (172)
T 2erx_A 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKL 150 (172)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCC
Confidence 567799999999999876666666666666654333347999999999999754221 1122222222 3456789999
Q ss_pred cccHHHHHHHHHhhc
Q 012884 405 ELSSEDAVKSLSTEG 419 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~ 419 (454)
..++.+.++.+....
T Consensus 151 ~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 151 NHNVKELFQELLNLE 165 (172)
T ss_dssp TBSHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999987544
No 82
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.70 E-value=3.5e-17 Score=147.40 Aligned_cols=156 Identities=17% Similarity=0.081 Sum_probs=105.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+..+. ....+.+|||||+.+. .....
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 71 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDY-------DRLRP 71 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETT------EEEEEEEECCCCSGGG-------TTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECC------EEEEEEEEECCCCHhH-------HHHHH
Confidence 3789999999999999999997543 24444454433322232221 1136789999998543 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-------------HHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~-------------~l~~~l 392 (454)
.+++.+|++++|+|++++.+.++.. .|..++..+. .+.|+++|+||+|+.+.....+ +..+..
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC---CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 4678899999999999876666665 5666676553 2789999999999976432211 122222
Q ss_pred Hhc---CCceecccccccHHHHHHHHHhhc
Q 012884 393 LKI---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
... .+.++++.+..++.+.++.+...+
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 149 KEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 333 456788899999999999988655
No 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.70 E-value=1.7e-16 Score=144.03 Aligned_cols=162 Identities=21% Similarity=0.188 Sum_probs=104.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCC--------CceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADY--------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 318 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~--------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~ 318 (454)
.+|.++|.+|||||||++.|.+.......- ..+|............ .. .....+.||||||+.+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~--~~~~~~~i~Dt~G~~~----- 86 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGE-VK--GFKTRFHLYTVPGQVF----- 86 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCC-SS--SCEEEEEEEECCSCCS-----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeeccccccc-cc--CCceEEEEEeCCChHH-----
Confidence 478999999999999999998765432110 1122211111111100 00 0123799999999843
Q ss_pred CcccchhhcccccccEEEEEEeCCCCCC---HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Q 012884 319 KGLGRNFLRHLRRTRLLVHVIDAAAENP---VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 395 (454)
Q Consensus 319 ~~lg~~fl~~i~~advll~ViDas~~~~---~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~ 395 (454)
+......+++.+|++|+|+|++++.. .+.++.+..++..+.....+.|+++|+||+|+.+. ...+++.+.+...
T Consensus 87 --~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 87 --YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVDPE 163 (198)
T ss_dssp --CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHCTT
T ss_pred --HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-cCHHHHHHHHHhc
Confidence 23334456788999999999985432 23344455566655444568999999999999764 2234455555444
Q ss_pred C---CceecccccccHHHHHHHHHhhc
Q 012884 396 G---CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 g---~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+ +.++++....++.+.++.++..+
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 4 46789999999999999988654
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=2.1e-17 Score=154.11 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=104.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc--cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I--a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|+++|.+|||||||+|+|++.+... .....++.... .+.... .....+.||||||+.+. ...
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~-----~~~~~~~l~Dt~G~~~~-------~~~ 77 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQ-----GNVIKFNVWDTAGQEKK-------AVL 77 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTT-----SCEEEEEEEEECSGGGT-------SCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCC-----CcEEEEEEEecCCchhh-------chH
Confidence 478999999999999999999765321 12222222111 111110 00136899999998543 122
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHH-HHHHHHhcC--Cceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEILKIG--CDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~-l~~~l~~~g--~~~~s 401 (454)
....++.+|++|+|+|+++..+.+++..|..++..+.. .++|+++|+||+|+.+..+...+ ..+.....+ +.+++
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (218)
T 4djt_A 78 KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEIS 155 (218)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEB
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEe
Confidence 33456779999999999988777777777676665431 35899999999999865332222 222323333 56789
Q ss_pred ccccccHHHHHHHHHhhcCcccc
Q 012884 402 SETELSSEDAVKSLSTEGGEADL 424 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~~~~ 424 (454)
+....++.+.+..+...+.....
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCCTT
T ss_pred cCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999877754443
No 85
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.69 E-value=6.5e-17 Score=146.20 Aligned_cols=165 Identities=16% Similarity=0.043 Sum_probs=107.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeecc-ceeeeCCCCCCc---ccccccEEEecCCCCccccccCCccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGA---EKYSSEATLADLPGLIEGAHLGKGLG 322 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~-~g~v~~~~~~~~---~~~~~~i~liDTPGii~~a~~~~~lg 322 (454)
.+|+++|.+|||||||+|+|++.+......+..+.+.. ...+..+..... ......+.||||||+.+ +.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~ 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FR 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HH
Confidence 47899999999999999999986543222221111211 122222211000 00013799999999843 33
Q ss_pred chhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCce
Q 012884 323 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDK 399 (454)
Q Consensus 323 ~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~ 399 (454)
..+..+++.+|++++|+|++++.+.+++..+..++..+.. ..+.|+++|+||+|+.+.++. .+++.+.... ..+.+
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE 163 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence 3456678899999999999987777777777666665432 147899999999999753221 2223333333 35677
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.+..+...+
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88899999999999887654
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=8.2e-17 Score=146.53 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=103.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+.. .+ ..|.......+.++ +..+.+|||||+.+. ...+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~ 78 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVIN--------NTRFLMWDIGGQESL-------RSSWN 78 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--EE-ECCSCSSCEEEEET--------TEEEEEEECCC-----------CGGGH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cC-cCCCccceEEEEEC--------CEEEEEEECCCCHhH-------HHHHH
Confidence 47899999999999999999976542 11 12333333334332 247999999998542 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-----c--CCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----I--GCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-----~--g~~~ 399 (454)
.+++.+|++++|+|++++.+.+....+..++..+. ...+.|+++|+||+|+.+... .+++.+.+.. . .+.+
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 156 (187)
T 1zj6_A 79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHIQA 156 (187)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEEEEE
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCcEEEE
Confidence 56788999999999999887777766665555321 124799999999999976421 2333333321 1 3467
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.++.++...
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 157 CCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp CBTTTTBTHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHH
Confidence 89999999999999988655
No 87
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.69 E-value=3.3e-17 Score=146.65 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=107.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.. ...+++.|+.......+..+.. ...+.||||||..+. .....
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~Dt~G~~~~-------~~~~~ 75 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGI------PARLDILDTAGQEEF-------GAMRE 75 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTE------EEEEEEEECCCTTTT-------SCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCE------EEEEEEEECCCchhh-------HHHHH
Confidence 478999999999999999999864 3456666665544444443211 136899999997542 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHH-HhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL-~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa 402 (454)
.+++.+|++++|+|+++..+.+.+..+..++ .... ..+.|+++|+||+|+.+.++. .++........ .+.++++
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 153 (181)
T 2fn4_A 76 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 153 (181)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 4567799999999999876666666555555 3222 246899999999999764222 12222222333 3567899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.+...+
T Consensus 154 ~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 88
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.69 E-value=1.3e-17 Score=163.49 Aligned_cols=156 Identities=22% Similarity=0.284 Sum_probs=111.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC--Ccccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~--~~lg~~f 325 (454)
+|+++|.||||||||+|+|++.+..++++|++|.+...+.+... +..+.||||||+.+..... ..+...+
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~e~i 76 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT--------DHQVTLVDLPGTYSLTTISSQTSLDEQI 76 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS--------SCEEEEEECCCCSCSCC----CCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC--------CCceEEEECcCCCccccccccCCHHHHH
Confidence 68999999999999999999998777999999999988888764 2379999999997643211 1111122
Q ss_pred hc---ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCce
Q 012884 326 LR---HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDK 399 (454)
Q Consensus 326 l~---~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~ 399 (454)
.+ ..+.+|++|+|+|++.. +....+..++.. .++|+++|+||+|+.+... ..+.+.+.+. ..+.+
T Consensus 77 ~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~ 147 (274)
T 3i8s_A 77 ACHYILSGDADLLINVVDASNL---ERNLYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIP 147 (274)
T ss_dssp HHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHH-----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEE
T ss_pred HHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHh-----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEE
Confidence 22 23789999999999863 233333344443 2699999999999865321 2333433332 45667
Q ss_pred ecccccccHHHHHHHHHhhcC
Q 012884 400 VTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+++....++.+.++.+.....
T Consensus 148 ~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 148 LVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CCCGGGHHHHHHHHHHHTCCC
T ss_pred EEcCCCCCHHHHHHHHHHHHh
Confidence 888899999999999886654
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=3.3e-17 Score=144.21 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=103.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|++.... ..+..|+.+.....+..+. ....+.+|||||+.+. ......
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~-------~~~~~~ 70 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDS------SPSVLEILDTAGTEQF-------ASMRDL 70 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTCC-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECC------EEEEEEEEECCCchhh-------HHHHHH
Confidence 6889999999999999999976532 3344444333333333221 1135899999997432 223344
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSET 404 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa~~ 404 (454)
.++.+|++++|+|+++..+.+....+..++..+.. ..+.|+++|+||+|+.+.++. .++..+.... ..+.++++.+
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKS 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTC
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCC
Confidence 56789999999999987666666666555554321 247999999999998753221 1222222332 3466788999
Q ss_pred cccHHHHHHHHHhh
Q 012884 405 ELSSEDAVKSLSTE 418 (454)
Q Consensus 405 ~~~~~e~~~~l~~~ 418 (454)
..++.+.++.+...
T Consensus 150 ~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 150 KTMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999888754
No 90
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=148.11 Aligned_cols=159 Identities=16% Similarity=0.012 Sum_probs=104.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++........+..+.+.....+.... ....+.||||||+.+. ....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT------AAVKAQIWDTAGLERY-------RAIT 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT------EEEEEEEEEESCCCTT-------CTTH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEeCCCchhh-------hhhh
Confidence 35889999999999999999998765432111111111111121111 0237899999998432 2334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa 402 (454)
...++.+|++|+|+|++.+.+.+.+..|..++..+. ..+.|+++|+||+|+...++. .++........+ +.++++
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 169 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSA 169 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 456788999999999998766666666666666442 247899999999999753221 233333333444 567888
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.+..+...+
T Consensus 170 ~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 170 LDSTNVELAFETVLKEI 186 (193)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999999887543
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.69 E-value=5.8e-17 Score=150.02 Aligned_cols=152 Identities=22% Similarity=0.202 Sum_probs=101.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+. ..+. +|..+..+.+.++. .++.+|||||+.+. ...+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~--~~~~-~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~-------~~~~~ 87 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRL--GQHV-PTLHPTSEELTIAG--------MTFTTFDLGGHIQA-------RRVWK 87 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT--------EEEEEEEECC-----------CCGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CccC-CCCCceeEEEEECC--------EEEEEEECCCcHhh-------HHHHH
Confidence 4789999999999999999987653 2222 34444555555432 37999999998542 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh------------
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------------ 394 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~------------ 394 (454)
.+++.+|++++|+|++++.+.++...+..++.... ...+.|+++|+||+|+.+. ...+++.+.+..
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSL 165 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCcccc-CCHHHHHHHhCccccccccccccc
Confidence 56778999999999998776666665555554321 1247999999999999752 112334444331
Q ss_pred -------cCCceecccccccHHHHHHHHHhh
Q 012884 395 -------IGCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 395 -------~g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
..+.++++.+..++.+.++.++..
T Consensus 166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 235678999999999999988743
No 92
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.69 E-value=5.5e-17 Score=161.53 Aligned_cols=163 Identities=17% Similarity=0.080 Sum_probs=111.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.||||||||+|+|++... ...+++++|++...+.+.++. ..++.||||||+.+... .-+....
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~--~~~~~~~ 74 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-------NMTLNLWDCGGQDVFME--NYFTKQK 74 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-------TEEEEEEEECCSHHHHH--HHHTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-------ceEEEEEECCCcHHHhh--hhhhhHH
Confidence 3788999999999999999988744 447789999988888776431 23799999999853200 0001223
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------HHHHHHHHHhcC--
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILKIG-- 396 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-------~~~l~~~l~~~g-- 396 (454)
...++.+|++|+|+|+++..+.+++..|.+++........+.|+++|+||+|+.+..+. .+++.+.....+
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 34567899999999999988888876665555432111246999999999999873222 133444444454
Q ss_pred ---CceecccccccHHHHHHHHHhhc
Q 012884 397 ---CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 397 ---~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.++++.. .+..+++..+...+
T Consensus 155 ~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp SCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 34566666 67777777766544
No 93
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.69 E-value=1.8e-16 Score=140.86 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=102.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|.+.+.. .+ ..|.......+.++ ...+.+|||||+.+ +...+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~~~Dt~G~~~-------~~~~~~ 69 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV--TT-IPTIGFNVETVTYK--------NLKFQVWDLGGLTS-------IRPYWR 69 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--CC-CCCSSEEEEEEEET--------TEEEEEEEECCCGG-------GGGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--Cc-CCcCccceEEEEEC--------CEEEEEEECCCChh-------hhHHHH
Confidence 47899999999999999999876532 11 11222223333332 23799999999843 223345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
.+++.+|++++|+|++++.+.+....+...+.... ...+.|+++|+||+|+.+..+ .+++.+.+.. ..+.+
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 147 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFK 147 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCceEEEE
Confidence 66788999999999998877776655444443211 124789999999999986522 2233333321 13567
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.++.+...+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 148 TSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHH
Confidence 88999999999999887544
No 94
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.69 E-value=6.8e-17 Score=141.78 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=104.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|.+... ...+..|+.+.....+..+.. ...+.+|||||..+. ......
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~D~~G~~~~-------~~~~~~ 70 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGE------TCLLDILDTAGQEEY-------SAMRDQ 70 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTE------EEEEEEEECCCCSSC-------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCE------EEEEEEEECCCchhh-------hHHHHH
Confidence 688999999999999999997643 233444443333233332210 136889999997432 222334
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh--cCCceeccccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSETE 405 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~--~g~~~~sa~~~ 405 (454)
.++.+|++++|+|+++..+.++...+..++..+.. ..+.|+++|+||+|+.+.....++..+.... ..+.++++...
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (166)
T 2ce2_X 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTR 149 (166)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 56779999999999987666666666666655432 1369999999999987632222233333333 35667888999
Q ss_pred ccHHHHHHHHHhhc
Q 012884 406 LSSEDAVKSLSTEG 419 (454)
Q Consensus 406 ~~~~e~~~~l~~~~ 419 (454)
.++.+.+..+...+
T Consensus 150 ~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 150 QGVEDAFYTLVREI 163 (166)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887543
No 95
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.69 E-value=1.8e-17 Score=162.83 Aligned_cols=154 Identities=19% Similarity=0.320 Sum_probs=110.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc--CCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~--~~~lg~~ 324 (454)
.+|+++|.||||||||+|+|++.+..++++|++|.+...+.+.. . ..+.+|||||+.+.... .+.+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~--------~~l~l~DtpG~~~~~~~~~~e~v~~~ 74 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N--------KDLEIQDLPGIYSMSPYSPEAKVARD 74 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C--------TTEEEEECCCCSCSSCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C--------CeEEEEECCCcCccCCCChHHHHHHH
Confidence 47899999999999999999998877899999999888887753 1 37999999999653211 1122233
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~s 401 (454)
++.. +.+|++++|+|++.. +....|..++.. .++|+++|+||+|+..... ..+.+.+.+ ...+.+++
T Consensus 75 ~~~~-~~~d~vi~V~D~t~~---e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~S 144 (272)
T 3b1v_A 75 YLLS-QRADSILNVVDATNL---ERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-GVPVVATS 144 (272)
T ss_dssp HHHT-TCCSEEEEEEEGGGH---HHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred HHhc-CCCCEEEEEecCCch---HhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-CCCEEEEE
Confidence 3332 469999999999863 333334444443 3799999999999864321 123344333 24566789
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.+..+....
T Consensus 145 A~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TTTTBSHHHHHHHHHHSC
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 999999999999998755
No 96
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=151.90 Aligned_cols=159 Identities=14% Similarity=0.007 Sum_probs=104.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++.+......+.++.+.....+..+.. ...+.||||||..+. ...+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~~-------~~~~ 91 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK------TVKLQIWDTAGQERF-------RSVT 91 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTE------EEEEEEECCTTHHHH-------SCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCe------eeEEEEEcCCCcHhH-------HHHH
Confidence 358899999999999999999987654433444444433334433210 137999999997432 2234
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa 402 (454)
..+++.+|++|+|+|++++.+.+++..|..++..+.. .+.|+++|+||+|+...++. .++..+.....+ +.++++
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA 169 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSA 169 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 4567889999999999987767777777666665432 47899999999999653221 223333334444 567899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.+..+...+
T Consensus 170 ~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 170 LTGENVEEAFLKCARTI 186 (200)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887655
No 97
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.69 E-value=1.2e-16 Score=141.14 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=102.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+|+|++.+.. ... .|.......+... ...+.+|||||+.+ +...+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~~~~~~~ 63 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYK--------NISFTVWDVGGQDK-------IRPLWRH 63 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCC--CCSSCCEEEEECS--------SCEEEEEECCCCGG-------GHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-ccc--CcCceeEEEEEEC--------CEEEEEEEcCCChh-------hHHHHHH
Confidence 5789999999999999999876532 222 2333333344432 24799999999843 2223445
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCcee
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDKV 400 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~~ 400 (454)
+++.+|++++|+|++++.+.+....+...+... ....+.|+++|+||+|+.+... .+++.+.+.. ..+.++
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQAT 141 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEEC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEEc
Confidence 678899999999999876666655444444321 1124789999999999976422 2333333321 125678
Q ss_pred cccccccHHHHHHHHHhhc
Q 012884 401 TSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~ 419 (454)
++....++.+.++.+...+
T Consensus 142 Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 142 CATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp BTTTTBTHHHHHHHHHHHC
T ss_pred ccCCCcCHHHHHHHHHHHH
Confidence 9999999999999987544
No 98
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.69 E-value=9.3e-17 Score=145.63 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=101.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+.. . ...|.......+.++ +..+.||||||+.+ +...+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~--~-~~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~-------~~~~~~ 83 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVV--H-TSPTIGSNVEEIVIN--------NTRFLMWDIGGQES-------LRSSWN 83 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCE--E-EECCSSSSCEEEEET--------TEEEEEEEESSSGG-------GTCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--c-cCCcCceeeEEEEEC--------CEEEEEEECCCCHh-------HHHHHH
Confidence 47899999999999999999987541 1 111222222233322 23799999999844 223345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH-----hc--CCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~-----~~--g~~~ 399 (454)
.+++.+|++++|+|+++..+.++...+...+.... ...++|+++|+||+|+.+... .+++.+.+. .. .+.+
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 161 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHIQA 161 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCceEEEE
Confidence 66788999999999999877777665555444321 124799999999999976321 223333321 11 3567
Q ss_pred ecccccccHHHHHHHHHh
Q 012884 400 VTSETELSSEDAVKSLST 417 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~ 417 (454)
+++....++.+.++.++.
T Consensus 162 ~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 162 CCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CBTTTTBTHHHHHHHHHT
T ss_pred ccCCCCcCHHHHHHHHHh
Confidence 888999999999988864
No 99
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.68 E-value=3.5e-17 Score=156.10 Aligned_cols=162 Identities=14% Similarity=0.074 Sum_probs=96.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCC--ceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc---
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL--- 321 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~p--fTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l--- 321 (454)
.+|++||.+|||||||+|+|++.......++ ++|.++....+... +..+.||||||+.+.......+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--------ETELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--------TEEEEEEECCSCC-----CHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--------CceEEEEECCCccCCCCCHHHHHHH
Confidence 4789999999999999999999887666666 67777776666543 2479999999998754433222
Q ss_pred -cchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------HHHHHHHH
Q 012884 322 -GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------QSLTEEIL 393 (454)
Q Consensus 322 -g~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-------~~l~~~l~ 393 (454)
...+....+.+|++|+|+|++... ..+...+...+..+... ..+|+++|+||+|+....+.. +.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYT-EEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCS-SHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCC-HHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 223344456789999999998543 34455544444332211 246999999999997653221 23445555
Q ss_pred hcCCceeccc-------ccccHHHHHHHHHhh
Q 012884 394 KIGCDKVTSE-------TELSSEDAVKSLSTE 418 (454)
Q Consensus 394 ~~g~~~~sa~-------~~~~~~e~~~~l~~~ 418 (454)
.++....... ...++.+.+..+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 5554322211 224556666555433
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.68 E-value=6.8e-17 Score=146.49 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=104.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+ ...+.. |.......+.++ ...+.+|||||+.+. ...+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~-------~~~~~ 80 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGFNIKTLEHR--------GFKLNIWDVGGQKSL-------RSYWR 80 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSEEEEEEEET--------TEEEEEEEECCSHHH-------HTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCccceEEEEEC--------CEEEEEEECCCCHhH-------HHHHH
Confidence 478999999999999999999876 333322 222223334332 237999999998542 22345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
.+++.+|++++|+|++++.+.++...+..++.... ...+.|+++|+||+|+.+... .+++.+.+.. ..+.+
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQG 158 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEEEE
Confidence 56788999999999998776666655555444321 124699999999999976422 2334433321 23567
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.++.+...+
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 159 CSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHH
Confidence 88999999999999987654
No 101
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.68 E-value=8.4e-17 Score=146.28 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=101.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.... ..|..|+.......+..+.. ...+.||||||..+. .....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~~ 73 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQ------RIELSLWDTSGSPYY-------DNVRP 73 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSC------EEEEEEEEECCSGGG-------TTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCE------EEEEEEEECCCChhh-------hhhHH
Confidence 47889999999999999999986532 33333333222223332211 237899999998542 12233
Q ss_pred cccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----------------HHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSLT 389 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----------------e~~~~l~ 389 (454)
..++.+|++++|+|++++.+.+++ ..|..++..+. .+.|+++|+||+|+.+.. +..+++.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 150 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 150 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence 456889999999999987666666 56666676653 368999999999997431 1122222
Q ss_pred HHHHhcCCceeccc-ccccHHHHHHHHHhh
Q 012884 390 EEILKIGCDKVTSE-TELSSEDAVKSLSTE 418 (454)
Q Consensus 390 ~~l~~~g~~~~sa~-~~~~~~e~~~~l~~~ 418 (454)
+.+....+.++++. ...++.+.++.+...
T Consensus 151 ~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 151 KQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp HHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 22222345677887 577899998887643
No 102
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.6e-17 Score=152.01 Aligned_cols=161 Identities=15% Similarity=0.021 Sum_probs=105.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+++|++........+..+.+.....+..+.. ...+.||||||+.+. ....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 79 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK------RIKAQIWDTAGQERY-------RAIT 79 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTE------EEEEEEECCTTTTTT-------TCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE------EEEEEEEECCCccch-------hhhH
Confidence 458899999999999999999987654433333333333333333210 137899999997442 2234
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhcC--Cceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG--CDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~g--~~~~sa 402 (454)
..+++.+|++|+|+|++++.+.+++..|..++..+. ..+.|++||+||+|+...++. .++..+.....+ +.++++
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 157 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCC
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 456788999999999998777777777777776553 236899999999999753221 123333333343 456888
Q ss_pred cccccHHHHHHHHHhhcCc
Q 012884 403 ETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~~ 421 (454)
....++.+.++.+...+..
T Consensus 158 ~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998877643
No 103
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.68 E-value=9.8e-17 Score=148.28 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=104.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+.. ..+..|+.......+..+. ....+.||||||..+. .....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~ 91 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDG------KQVELALWDTAGQEDY-------DRLRP 91 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETT------EEEEEEEECCCCSGGG-------TTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECC------EEEEEEEEECCCchhH-------HHHHH
Confidence 47899999999999999999987643 2333333332222333221 0137899999997442 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-------------HHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~-------------~l~~~l 392 (454)
..++.+|++++|+|+++..+.++. ..|..++..+. .+.|+++|+||+|+....+..+ +..+..
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 467889999999999987666666 45666666543 3789999999999986532211 222223
Q ss_pred HhcC---CceecccccccHHHHHHHHHhh
Q 012884 393 LKIG---CDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 393 ~~~g---~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
...+ +.++++.+..++.+.+..+...
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 169 NRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 3333 4678888899999999887643
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.3e-17 Score=152.65 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=106.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++........+..+.+.....+..+. ....+.||||||..+ +....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~-------~~~~~ 89 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE------KRVKLQIWDTAGQER-------YRTIT 89 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT------TTEEEEEECHHHHHH-------CHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC------EEEEEEEEeCCChHH-------HHHHH
Confidence 45889999999999999999998653221111111111112222111 123699999999743 23334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
...++.+|++++|+|+++..+.+.+..|..++..+. ..+.|+++|+||+|+.+.++. .++....... ..+.++++
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASA 167 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEEC
Confidence 556788999999999998777777777777777654 247899999999999654221 1222222222 34567899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
....++.+.++.+...+
T Consensus 168 ~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 168 KENISVRQAFERLVDAI 184 (191)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887544
No 105
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.68 E-value=6e-17 Score=149.31 Aligned_cols=159 Identities=14% Similarity=0.032 Sum_probs=101.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++........+..+.+.....+..+. ....+.||||||..+ +...+
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~-------~~~~~ 94 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG------ERTVLQLWDTAGQER-------FRSIA 94 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETT------EEEEEEEEECTTCTT-------CHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECC------EEEEEEEEECCCCcc-------hhhhH
Confidence 35889999999999999999998653211111111111222222221 013689999999743 33345
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh------HHH-HHHHHHHHHh--cC
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDR-LQSLTEEILK--IG 396 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~------~e~-~~~l~~~l~~--~g 396 (454)
...++.+|++|+|+|++++.+.+++..|.+++..+. ..+.|+++|+||+|+.+. ++. .++..+.... ..
T Consensus 95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~ 172 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA--HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL 172 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE
T ss_pred HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe
Confidence 566788999999999998777777777777776543 136899999999999632 111 1122222222 34
Q ss_pred CceecccccccHHHHHHHHHhhc
Q 012884 397 CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 397 ~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+.++++.+..++.+.+..++...
T Consensus 173 ~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 56789999999999999887544
No 106
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=5.5e-17 Score=148.17 Aligned_cols=161 Identities=11% Similarity=0.052 Sum_probs=104.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++..... .+..|+-......+..+. ....+.||||||+.+. .....
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~~ 74 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDK------SVCTLQITDTTGSHQF-------PAMQR 74 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETT------EEEEEEEEECCGGGSC-------HHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECC------EEEEEEEEeCCChHHh-------HHHHH
Confidence 478999999999999999999865422 121111111111121111 0136899999997432 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCceecccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSET 404 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~~sa~~ 404 (454)
..++.+|++++|+|+++..+.+....+...+..+.....+.|+++|+||+|+.......++..+..... .+.++++..
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (199)
T 2gf0_A 75 LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKM 154 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCC
Confidence 456779999999999987666666656555554432224689999999999975322222333333333 456789999
Q ss_pred cccHHHHHHHHHhhcCc
Q 012884 405 ELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 405 ~~~~~e~~~~l~~~~~~ 421 (454)
..++.+.++.+......
T Consensus 155 ~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 155 NYNVKELFQELLTLETR 171 (199)
T ss_dssp TBSHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999876643
No 107
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.68 E-value=1.3e-16 Score=149.59 Aligned_cols=156 Identities=13% Similarity=0.023 Sum_probs=106.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|.++|.+|||||||+++|++.+. ...|..|+.+.....+..+.. ...+.||||||..+. .....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 93 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQ------RVELSLWDTSGSPYY-------DNVRP 93 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--C------EEEEEEEEECCSGGG-------TTTGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCE------EEEEEEEECCCCHhH-------HHHHH
Confidence 4789999999999999999998653 244444444333333333211 237899999998543 22234
Q ss_pred cccccccEEEEEEeCCCCCCHhh-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-------------HHHHHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------DRLQSLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d-~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-------------e~~~~l~~~l 392 (454)
..++.+|++|+|+|+++..+.++ +..|..++..+. .+.|+++|+||+|+.+.. ...++..+..
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH
Confidence 45778999999999999877776 577777777664 478999999999997521 1112222333
Q ss_pred Hhc---CCceeccccccc-HHHHHHHHHhhc
Q 012884 393 LKI---GCDKVTSETELS-SEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~---g~~~~sa~~~~~-~~e~~~~l~~~~ 419 (454)
... .+.++++.+..+ +.+.+..+...+
T Consensus 171 ~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 171 KQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 333 456788888887 999999887654
No 108
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=3.2e-17 Score=150.53 Aligned_cols=162 Identities=19% Similarity=0.134 Sum_probs=79.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceee-eccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~-~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|+++|.+|||||||+++|++.+... ..+..|+. +.....+.++... ....+.||||||+.+. ...
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~-------~~~ 89 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT----VSVELFLLDTAGSDLY-------KEQ 89 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSS----EEEEEEEEETTTTHHH-------HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc----cEEEEEEEECCCcHHH-------HHH
Confidence 478999999999999999999874433 45555553 5555555543210 0136999999998542 223
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCC-hHHH-HHHHHHHHHhcC--Cce
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPE-ARDR-LQSLTEEILKIG--CDK 399 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~-~~~kp~IvV~NK~Dl~~-~~e~-~~~l~~~l~~~g--~~~ 399 (454)
+..+++.+|++++|+|++++.+.+.+..|..++..+... ..+.|+++|+||+|+.+ .++. .++..+.....+ +.+
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 169 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFD 169 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEE
Confidence 456678899999999999877777777777777765421 13789999999999976 3221 233444444444 456
Q ss_pred ecccc-cccHHHHHHHHHhhc
Q 012884 400 VTSET-ELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~-~~~~~e~~~~l~~~~ 419 (454)
+++.. ..++.+.+..+...+
T Consensus 170 ~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 170 VSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp CCC-------CHHHHHHHHHH
T ss_pred eccCCCCcCHHHHHHHHHHHH
Confidence 78888 889999998887654
No 109
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=151.34 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=95.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+. ...+..|+.+.....+..+.. ...+.||||||..+. .....
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~l~l~Dt~G~~~~-------~~~~~ 100 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGK------PVHLHIWDTAGQDDY-------DRLRP 100 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTE------EEEEEEEEC------------------
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCE------EEEEEEEECCCchhh-------hHHHH
Confidence 4789999999999999999997653 234445554433333332210 136899999997542 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-------------~~l~~~l 392 (454)
..++.+|++++|+|++++.+.+.+. .|..++..+. .+.|+++|+||+|+....... ++..+..
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA 177 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence 4567899999999999876666664 5666666553 468999999999998754321 1222233
Q ss_pred Hhc---CCceecccccccHHHHHHHHHhhc
Q 012884 393 LKI---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
... .+.++++.+..++.+.+..+...+
T Consensus 178 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 178 RSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 333 346788999999999999887544
No 110
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.1e-16 Score=148.62 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=102.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+.. ..+..|+.+.....+..+. ....+.||||||+.+. .....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 91 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDG------KQVELALWDTAGQEDY-------DRLRP 91 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETT------EEEEEEEEECTTCTTC-------TTTGG
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECC------EEEEEEEEECCCcHHH-------HHHHH
Confidence 47899999999999999999986543 3343444332222232221 0136899999998543 22334
Q ss_pred cccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH-------------HHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-------------TEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l-------------~~~l 392 (454)
..++.+|++++|+|+++..+.+.. ..|..++..+. .++|+++|+||+|+....+..+.+ .+..
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMA 168 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHH
Confidence 567889999999999987666665 45666666543 379999999999997653322211 1222
Q ss_pred Hhc---CCceecccccccHHHHHHHHHhhc
Q 012884 393 LKI---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
... .+.++++.+..++.+.+..+....
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 169 VRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 233 346788999999999999887654
No 111
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.67 E-value=1.3e-16 Score=148.92 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=102.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.... ..|..|+.......+..+.. ...+.||||||..+. .....
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~-------~~~~~ 94 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQ------RIELSLWDTSGSPYY-------DNVRP 94 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSS------EEEEEEEEECCSGGG-------TTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCE------EEEEEEEeCCCcHhh-------hHHHH
Confidence 47899999999999999999986542 33333433322223333211 237899999998543 11223
Q ss_pred cccccccEEEEEEeCCCCCCHhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------------HHHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~-~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-------------~~~l~~~l 392 (454)
..++.+|++|+|+|+++..+.+++ ..|..++..+. .+.|+++|+||+|+.+.... .++..+..
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence 456789999999999987666666 56666776653 36899999999999743111 12222222
Q ss_pred Hh---cCCceeccc-ccccHHHHHHHHHhh
Q 012884 393 LK---IGCDKVTSE-TELSSEDAVKSLSTE 418 (454)
Q Consensus 393 ~~---~g~~~~sa~-~~~~~~e~~~~l~~~ 418 (454)
.. ..+.++++. ...++.+.++.++..
T Consensus 172 ~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 172 KQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 23 345677877 567899988887643
No 112
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=2.7e-18 Score=158.33 Aligned_cols=159 Identities=15% Similarity=0.072 Sum_probs=104.1
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+|+|++.+......+.+|.+.....+..+.. ...+.||||||..+. ....
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~-------~~~~ 99 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK------TIKLQIWDTAGQERF-------RTIT 99 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTE------EEEEEEECCTTCTTC-------CCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCE------EEEEEEEECCCcHhH-------HHHH
Confidence 358899999999999999999987654444455555555555544311 136899999997432 2334
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-HHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-~~l~~~l~~--~g~~~~sa 402 (454)
..+++.+|++++|+|+++..+.+.+..|..++..+.. .+.|+++|+||+|+.+.++.. ++..+.... ..+.++++
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA 177 (199)
T 3l0i_B 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 177 (199)
T ss_dssp CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEEC
Confidence 4567889999999999998777777777777765532 368999999999997542111 112222222 35677888
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.++.+...+
T Consensus 178 ~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 178 KNATNVEQSFMTMAAEI 194 (199)
T ss_dssp ---HHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999998887544
No 113
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.67 E-value=2.8e-17 Score=172.92 Aligned_cols=157 Identities=24% Similarity=0.232 Sum_probs=104.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc-chh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-RNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg-~~f 325 (454)
+|+++|.||||||||+|+|++.+.. +.++++||++.....+..+ +..+.||||||+.+....-+.++ ...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--------g~~v~liDT~G~~~~~~~ve~~gi~~~ 297 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--------GIPVQVLDTAGIRETSDQVEKIGVERS 297 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--------TEEEEECC-------------------
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--------CEEEEEEECCccccchhHHHHHHHHHH
Confidence 5899999999999999999988655 5889999998877777654 24799999999966432222222 235
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCCceeccccc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 405 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~~~~sa~~~ 405 (454)
+..++.+|++|+|+|++.+...++.+ +...+. .+|+++|+||+|+...... ..+.+......+..+++.+.
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~-i~~~l~-------~~piivV~NK~Dl~~~~~~-~~~~~~~~~~~~i~iSAktg 368 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQE-IYEQVK-------HRPLILVMNKIDLVEKQLI-TSLEYPENITQIVHTAAAQK 368 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHH-HHHHHT-------TSCEEEEEECTTSSCGGGS-TTCCCCTTCCCEEEEBTTTT
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHH-HHHhcc-------CCcEEEEEECCCCCcchhh-HHHHHhccCCcEEEEECCCC
Confidence 66788999999999999877666533 333343 4799999999999875431 11111111234567899999
Q ss_pred ccHHHHHHHHHhhcCc
Q 012884 406 LSSEDAVKSLSTEGGE 421 (454)
Q Consensus 406 ~~~~e~~~~l~~~~~~ 421 (454)
.++.+.++.+......
T Consensus 369 ~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 369 QGIDSLETAILEIVQT 384 (462)
T ss_dssp BSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999988876643
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.67 E-value=2.3e-17 Score=153.74 Aligned_cols=166 Identities=17% Similarity=0.098 Sum_probs=102.6
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCC----CcccccccEEEecCCCCccccccCCcc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGKGL 321 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~----~~~~~~~~i~liDTPGii~~a~~~~~l 321 (454)
..+|+++|.+|||||||+|+|++........+..+.+.....+.++... ........+.||||||+.+ +
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~ 97 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------F 97 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------H
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-------H
Confidence 3578999999999999999999865432222222222222223221100 0000023699999999743 2
Q ss_pred cchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCc
Q 012884 322 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCD 398 (454)
Q Consensus 322 g~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~ 398 (454)
...+..+++.+|++|+|+|+++..+.+++..|..++..+. ...+.|+++|+||+|+.+.++. .++..+..... .+.
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEE
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEE
Confidence 2334566788999999999988655554444433332211 1147899999999999753221 22333333333 456
Q ss_pred eecccccccHHHHHHHHHhhc
Q 012884 399 KVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 399 ~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++++....++.+.+..+...+
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999887654
No 115
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.6e-16 Score=145.87 Aligned_cols=156 Identities=19% Similarity=0.107 Sum_probs=105.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+.. ..+..|+.......+..+. ....+.||||||+.+ .....
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~--------~~~~~ 93 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDD------EVVSMEILDTAGQED--------TIQRE 93 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETT------EEEEEEEEECCCCCC--------CHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECC------EEEEEEEEECCCCCc--------ccchh
Confidence 47899999999999999999987542 3333333322222232221 023689999999854 12344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 402 (454)
..++.+|++++|+|++++.+.+++..|..++..+.. ..+.|+++|+||+|+.+.+ +..+++.+.+ ...+.++++
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 171 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAFYECSA 171 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEEEECCT
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHh-CCeEEEECC
Confidence 566789999999999987777777766666665421 2478999999999997532 2222332222 234567888
Q ss_pred cccc-cHHHHHHHHHhhc
Q 012884 403 ETEL-SSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~-~~~e~~~~l~~~~ 419 (454)
.... ++.+.+..++...
T Consensus 172 ~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 172 CTGEGNITEIFYELCREV 189 (196)
T ss_dssp TTCTTCHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHH
Confidence 8888 9999999887544
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.66 E-value=3.7e-17 Score=159.11 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=110.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc--CCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~--~~~lg~~ 324 (454)
.+|+++|.||||||||+|+|++.+..++++|++|.+...+.+... +..+.||||||+...... .+.+...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~e~v~~~ 77 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--------GYTINLIDLPGTYSLGYSSIDEKIARD 77 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--------TEEEEEEECCCCSSCCSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--------CeEEEEEECCCcCccCCCCHHHHHHHH
Confidence 478999999999999999999988778999999998888887653 237999999999653211 1112233
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~s 401 (454)
++.. +.+|++++|+|++.. ..... +...+.. .+.|+++|+||+|+...+. ..+.+.+.+. ..+.+++
T Consensus 78 ~~~~-~~~d~ii~V~D~t~~--~~~~~-~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~S 147 (258)
T 3a1s_A 78 YLLK-GDADLVILVADSVNP--EQSLY-LLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTS 147 (258)
T ss_dssp HHHH-SCCSEEEEEEETTSC--HHHHH-HHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECC
T ss_pred HHhh-cCCCEEEEEeCCCch--hhHHH-HHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEE
Confidence 3322 679999999999874 23332 3344442 3799999999999864321 1233333332 4556788
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+....
T Consensus 148 A~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHh
Confidence 889999999999887654
No 117
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.66 E-value=1.9e-16 Score=144.63 Aligned_cols=154 Identities=22% Similarity=0.232 Sum_probs=102.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|++.+... .+. .|.......+... ...+.||||||+.+. ...+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~-~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~ 85 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNE-DMI-PTVGFNMRKITKG--------NVTIKLWDIGGQPRF-------RSMWE 85 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC-SCC-CCCSEEEEEEEET--------TEEEEEEEECCSHHH-------HTTHH
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCC-ccC-CCCceeEEEEEeC--------CEEEEEEECCCCHhH-------HHHHH
Confidence 478999999999999999999765432 111 2222222233322 237999999998542 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
..++.+|++++|+|+++..+.+....+...+.... ...+.|+++|+||+|+....+ .+++.+.+.. ..+.+
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCeeEEE
Confidence 56788999999999998766666655544443211 124799999999999986422 1233333221 13467
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.++.+...+
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 88999999999999988654
No 118
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=9.3e-17 Score=144.74 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=99.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+. ..+ ..|.......+.++ +..+.+|||||+.+. ...+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~--~~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~ 80 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV--VTT-KPTIGFNVETLSYK--------NLKLNVWDLGGQTSI-------RPYWR 80 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE--EEE-CSSTTCCEEEEEET--------TEEEEEEEEC----C-------CTTGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc--Ccc-CCcCccceEEEEEC--------CEEEEEEECCCCHhH-------HHHHH
Confidence 4789999999999999999986543 111 11211222233322 237899999998542 22345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
.+++.+|++++|+|+++..+.++...+...+.... ...++|+++|+||+|+.+... .+++.+.+.. ..+.+
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 158 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSIVA 158 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEE
Confidence 66788999999999998877776665555444321 125799999999999976421 2334433321 13467
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.++.+...+
T Consensus 159 ~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 159 SSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp EBGGGTBTHHHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHHH
Confidence 88999999999999887544
No 119
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=145.72 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=103.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+ ....|..|+.+.....+..+. ....+.||||||+.+.. . ..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~----~~ 86 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR-FISEYDPNLEDTYSSEETVDH------QPVHLRVMDTADLDTPR----N----CE 86 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETT------EEEEEEEEECCC---CC----C----TH
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceeeEEEEECC------EEEEEEEEECCCCCcch----h----HH
Confidence 478999999999999999999865 235555555433222222221 01368899999985431 1 23
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~-~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa 402 (454)
..++.+|++++|+|+++..+.+++..|..++..+.. ...+.|+++|+||+|+.+.++. .++..+..... .+.++++
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 166 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSA 166 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCS
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEee
Confidence 466789999999999987767777666666654410 0137899999999999653221 12233333333 4567788
Q ss_pred -cccccHHHHHHHHHhhc
Q 012884 403 -ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 -~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.++.++..+
T Consensus 167 ~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 167 CLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSCSHHHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHH
Confidence 78889999998887543
No 120
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.66 E-value=2e-16 Score=150.22 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=106.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
+|.+||.+|||||||+++++.... ...|..|. .+.....+..+. ...++.||||+|+.+. .....
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~------~~v~l~iwDtaGqe~~-------~~l~~ 80 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLED------RTIRLQLWDTAGLERF-------RSLIP 80 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSS------CEEEEEEECCSCTTTC-------GGGHH
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecc------eEEEEEEEECCCchhh-------hhHHH
Confidence 678999999999999999986542 23332222 122222222221 1237899999998543 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH----HHHHHHHHHHHhcCCceecc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 402 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~----e~~~~l~~~l~~~g~~~~sa 402 (454)
.+++.++++++|+|.++..+++.+..|+.++..+.. .+.|++||+||+|+.+.+ +..+++++.+. ..+.++++
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~SA 157 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSA 157 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEEBT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEEeC
Confidence 467889999999999998888888888887775532 368999999999997643 22333333332 34678999
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
.+..++.++|+.+++.+.
T Consensus 158 ktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp TTTBSHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999987764
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=6.2e-17 Score=146.78 Aligned_cols=157 Identities=21% Similarity=0.341 Sum_probs=110.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC--Ccccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~--~~lg~~ 324 (454)
.+|+++|.+|||||||+|+|++....+..+|++|.+...+.+... +..+.+|||||+.+..... +.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--------GEKFKVVDLPGVYSLTANSIDEIIARD 79 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--------TEEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--------CcEEEEEECCCcCccccccHHHHHHHH
Confidence 378999999999999999999877666888999988888877654 2479999999986532110 011222
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~s 401 (454)
+++. ..+|++++|+|++. .+....+..++.. .+.|+++|+||+|+..... ..+++.+.+. ..+.+++
T Consensus 80 ~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~S 149 (188)
T 2wjg_A 80 YIIN-EKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLS 149 (188)
T ss_dssp HHHH-HCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECB
T ss_pred HHhc-cCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEE
Confidence 2221 35899999999875 3444445555543 3689999999999864321 2333333332 4567788
Q ss_pred ccccccHHHHHHHHHhhcCc
Q 012884 402 SETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~ 421 (454)
+....++.+.+..+......
T Consensus 150 a~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHHh
Confidence 89999999999998866543
No 122
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=8.3e-16 Score=156.03 Aligned_cols=162 Identities=27% Similarity=0.389 Sum_probs=116.1
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc-cc-c
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-LG-R 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~-lg-~ 323 (454)
...|+++|.||||||||+|+|++....+.+++++|.+...+.+... ...+.+|||||+.+....... .. .
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~ 238 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--------YFRYQIIDTPGLLDRPISERNEIEKQ 238 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--------TEEEEEEECTTTSSSCSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--------CceEEEEeCCCccccchhhhhHHHHH
Confidence 3478999999999999999999988777889999998877766543 237999999999764221111 11 1
Q ss_pred hhhcccccccEEEEEEeCCCCC--CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc--CCce
Q 012884 324 NFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDK 399 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~--~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~--g~~~ 399 (454)
.+......+|++++|+|++... ..++...+..++.... .++|+++|+||+|+....+ .++..+.+... .+.+
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 314 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPIK 314 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc---CCCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeEE
Confidence 2222234599999999998754 4555555555565432 2799999999999987543 34444444333 4667
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.++.++..+
T Consensus 315 iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHH
Confidence 88889999999999988665
No 123
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.66 E-value=3.1e-16 Score=165.43 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=111.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|++||.||||||||+|+|++.+. +. .++|++.....+.+.. ..+.||||||+.+ +...+.
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~--------~~~~l~Dt~G~~~-------~~~~~~ 384 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKN--------VKFNVWDVGGQDK-------IRPLWR 384 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSS--------CEEEEEEECCCGG-------GSGGGG
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCC--------EEEEEEECCCcHH-------HHHHHH
Confidence 4789999999999999999998773 22 3457777777776542 3799999999744 333466
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~-------g~~~ 399 (454)
.+++.+|++|+|+|+++..+.++...+..++... ....++|+|||+||+|+.+... .+++.+.+... .+.+
T Consensus 385 ~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQP 462 (497)
T ss_dssp GGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECcchhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEE
Confidence 7889999999999999877777766555555321 1124799999999999976422 23333333211 2567
Q ss_pred ecccccccHHHHHHHHHhhcC
Q 012884 400 VTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+++.+..++.+.++.+...+.
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999986653
No 124
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.65 E-value=6.5e-16 Score=142.19 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=97.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeee--CCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD--GDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~--~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|.++|.+|||||||++++.+..... +..+.+.....+. .... ....+.||||||..+.. .+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~l~i~Dt~G~~~~~----~~~~~ 88 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNS-----SFVNFQIWDFPGQMDFF----DPTFD 88 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCT-----TSCCEEEEECCSSCCTT----CTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCC-----CeeEEEEEECCCCHHHH----hhhhh
Confidence 578999999999999999998753321 1111111111111 1000 02379999999974421 11100
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-------HHHHHHHHHh---
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK--- 394 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-------~~~l~~~l~~--- 394 (454)
...+++.+|++|+|+|+++. ..+.+..+..++........+.|+++|+||+|+...... ..+..+.+..
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 14567789999999999986 445555555555543111247999999999999874322 1122223333
Q ss_pred ----cCCceecccccccHHHHHHHHHhh
Q 012884 395 ----IGCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 395 ----~g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
..+.++++.. .++.+.+..+++.
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 2356788888 9999999888754
No 125
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.64 E-value=3.4e-16 Score=142.45 Aligned_cols=153 Identities=20% Similarity=0.176 Sum_probs=101.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|.+.... .+. .|.......+..+ ...+.+|||||+.+ +...+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~--------~~~l~i~Dt~G~~~-------~~~~~~ 78 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDIS--HIT-PTQGFNIKSVQSQ--------GFKLNVWDIGGQRK-------IRPYWR 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCE--EEE-EETTEEEEEEEET--------TEEEEEEECSSCGG-------GHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--ccc-CcCCeEEEEEEEC--------CEEEEEEECCCCHH-------HHHHHH
Confidence 47899999999999999999976431 111 1111111123322 23799999999843 233345
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
.+++.+|++++|+|+++..+.++...+..++... ....+.|+++|+||+|+.+... .+++.+.+.. ..+.+
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCceEEEE
Confidence 6678899999999999876666655444433221 1124789999999999986432 2334333321 23567
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++.+..++.+.++.+...+
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHH
Confidence 89999999999999987654
No 126
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.64 E-value=4e-16 Score=141.93 Aligned_cols=153 Identities=20% Similarity=0.146 Sum_probs=101.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+|+|.+.+.. ...| |.......+..+ ...+.+|||||+.+. ...+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~-------~~~~~ 84 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYK--------NISFEVWDLGGQTGV-------RPYWR 84 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEET--------TEEEEEEEECCSSSS-------CCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEEC--------CEEEEEEECCCCHhH-------HHHHH
Confidence 47899999999999999999765431 1111 222222333332 247999999998542 22234
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
.+++.+|++++|+|++++.+.+....+...+... ....++|+++|+||+|+.+..+ .+++.+.+.. ..+.+
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEEEE
Confidence 5677899999999999887777665544444322 1224799999999999986522 2233333321 13567
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.++.+....
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCccCHHHHHHHHHHHH
Confidence 88899999999999887544
No 127
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=4.6e-16 Score=142.31 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=103.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++..... .+..| .......+.++.. ...+.||||||+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~t-~~~~~~~~~~~~~------~~~l~i~Dt~G~~~~------------ 80 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQ-EESPE-GGRFKKEIVVDGQ------SYLLLIRDEGGPPEL------------ 80 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCC-CCCTT-CEEEEEEEEETTE------EEEEEEEECSSSCCH------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCC-cceEEEEEEECCE------EEEEEEEECCCChhh------------
Confidence 478999999999999999999765432 22222 2222223333211 136788999998432
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh------HHHHHHHHHHHHhcCCcee
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDRLQSLTEEILKIGCDKV 400 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~------~e~~~~l~~~l~~~g~~~~ 400 (454)
++++.+|++++|+|+++..+.+++..|..++..+. ...+.|+++|+||+|+... .+..+++...+....+.++
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 81 QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 15677999999999998777777777777776542 1136899999999999421 1223333333333456789
Q ss_pred cccccccHHHHHHHHHhhc
Q 012884 401 TSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~ 419 (454)
++.+..++.+.+..++..+
T Consensus 160 Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987644
No 128
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.64 E-value=3.3e-16 Score=144.07 Aligned_cols=153 Identities=19% Similarity=0.158 Sum_probs=99.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++.+.. . + ..|.......+... ...+.+|||||+.+. ...+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~~-~-~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~ 91 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYK--------NICFTVWDVGGQDKI-------RPLWR 91 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCCE-E-E-EEETTEEEEEEEET--------TEEEEEEECC------------CTTHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCcc-c-c-CCcCceeEEEEEEC--------CEEEEEEECCCCHhH-------HHHHH
Confidence 47899999999999999999865431 1 1 22333223333332 237999999998432 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh-------cCCce
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 399 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~-------~g~~~ 399 (454)
..++.+|++++|+|++++.+.+....+...+.... ...+.|+++|+||+|+.+... .+++.+.+.. ..+.+
T Consensus 92 ~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 169 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYVQA 169 (192)
T ss_dssp HHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEE
Confidence 56788999999999998766666655444443211 123789999999999976422 2334333321 12567
Q ss_pred ecccccccHHHHHHHHHhhc
Q 012884 400 VTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 400 ~sa~~~~~~~e~~~~l~~~~ 419 (454)
+++....++.+.++.++..+
T Consensus 170 ~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 170 TCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CBTTTTBTHHHHHHHHHHHT
T ss_pred CcCCCcCCHHHHHHHHHHHH
Confidence 89999999999999987544
No 129
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.63 E-value=6.5e-16 Score=143.51 Aligned_cols=120 Identities=22% Similarity=0.127 Sum_probs=76.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc-hh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-NF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~-~f 325 (454)
.+|+++|.+|||||||+++|++.. ....|+.++.+. ..+.++.. ....+.||||||+.+. .. ..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~~~--~~~~~~~~-----~~~~~~i~Dt~G~~~~-------~~~~~ 72 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDSS--AIYKVNNN-----RGNSLTLIDLPGHESL-------RFQLL 72 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCEE--EEEECSST-----TCCEEEEEECCCCHHH-------HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccCCcceee--EEEEecCC-----CccEEEEEECCCChhH-------HHHHH
Confidence 478999999999999999999765 335555444322 22433211 0137999999998542 11 12
Q ss_pred hcccccccEEEEEEeCCCCC-CH-hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 326 LRHLRRTRLLVHVIDAAAEN-PV-NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~-~~-~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
..+++.+|++|+|+|+++.. .. ...+.|..++........+.|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 73 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 23477899999999998621 11 1223333333322111236899999999999754
No 130
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=3.9e-16 Score=147.48 Aligned_cols=160 Identities=15% Similarity=0.072 Sum_probs=103.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|++||.+|||||||+|+|++.+..+ ..++.++.+.....+.++.. ..++.+|||+|.... ...+ .
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~------~~~l~~~Dt~g~~~~---~~~l---~ 105 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE------SATIILLDMWENKGE---NEWL---H 105 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTE------EEEEEEECCTTTTHH---HHHH---H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCe------eeEEEEeecCCCcch---hhhH---H
Confidence 578999999999999999999765544 44554444333333333211 125789999997431 0111 1
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--cCCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~g~~~~sa 402 (454)
...++.+|++|+|+|+++..+++....|..++..... ..+.|+|+|+||+|+.+.++. .++....... ..+.++++
T Consensus 106 ~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SA 184 (211)
T 2g3y_A 106 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 184 (211)
T ss_dssp HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeC
Confidence 2245679999999999987767777666666654311 136899999999999753221 1111111222 34677899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.++.+++.+
T Consensus 185 k~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999988654
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=1.1e-16 Score=167.68 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=97.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccccc-CCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~-~~~lg~~ 324 (454)
.+|++||.||||||||+|+|++.+.. +.++|++|++.....+... +..+.+|||||+...... .+.+...
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~~~~ 95 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--------NYDFNLIDTGGIDIGDEPFLAQIRQQ 95 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC--------SSCCEEECCCC------CCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC--------CceEEEEECCCCCCcchHHHHHHHHH
Confidence 57899999999999999999998765 4889999999888877653 247999999998632110 1223334
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhcCC---ceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~g~---~~~s 401 (454)
+..+++.+|++|+|+|+..+....+... .+.+.. .++|+++|+||+|+.+..+. .. .+..+++ ..++
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l-~~~l~~-----~~~pvilV~NK~D~~~~~~~---~~-e~~~lg~~~~~~iS 165 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEV-AKILYR-----TKKPVVLAVNKLDNTEMRAN---IY-DFYSLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHH-HHHHTT-----CCSCEEEEEECC------------C-CSGGGSSSSEEECC
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHH-HHHHHH-----cCCCEEEEEECccchhhhhh---HH-HHHHcCCCceEEee
Confidence 5667889999999999988766666543 345553 47999999999998754221 11 1223333 3578
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.+..+....
T Consensus 166 A~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp TTTCTTHHHHHHHHHTTG
T ss_pred cccccchHHHHHHHHhhc
Confidence 888899999998887554
No 132
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.42 E-value=2.7e-17 Score=152.01 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=99.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+..+. ....+.||||||+.+. .....
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~~ 96 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGQEDY-------DRLRP 96 (204)
Confidence 4889999999999999999986543 34455565544433333221 1135779999998543 22233
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHH-------------HHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~-------------~l~~~l 392 (454)
..++.+|++++|+|++++.+.++.. .|..++..+. .+.|+++|+||+|+.+..+..+ +..+..
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
Confidence 4567899999999999887777765 5555565432 2789999999999976432111 111111
Q ss_pred Hhc---CCceecccccccHHHHHHHHH
Q 012884 393 LKI---GCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 393 ~~~---g~~~~sa~~~~~~~e~~~~l~ 416 (454)
... .+.++++.+..++.+.++.+.
T Consensus 174 ~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 174 KEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 111 345667777777777766654
No 133
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.62 E-value=7.1e-16 Score=142.17 Aligned_cols=160 Identities=15% Similarity=0.079 Sum_probs=102.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|++||.||||||||+|+|++.+..+ .+++.++.+.....+..+.. ...+.+|||+|.... ...+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~Dt~~~~~~---~~~~~--- 74 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGE------SATIILLDMWENKGE---NEWLH--- 74 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTE------EEEEEEECCCCC-------CTTG---
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCe------EEEEEEEEeccCcch---hhhHH---
Confidence 478999999999999999999755433 44555444433333333211 125789999997431 11121
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa 402 (454)
..+++.+|++++|+|+++..+++....|...+..... ..+.|+++|+||+|+...+.. .++........ .+.++++
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA 153 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSA 153 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEecc
Confidence 1234568999999999987777777666666654321 136899999999999753221 12211111223 3567899
Q ss_pred cccccHHHHHHHHHhhc
Q 012884 403 ETELSSEDAVKSLSTEG 419 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~ 419 (454)
.+..++.+.++.++...
T Consensus 154 ~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 154 AVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999999988665
No 134
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.62 E-value=3.3e-16 Score=152.70 Aligned_cols=156 Identities=20% Similarity=0.315 Sum_probs=108.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC--Ccccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~--~~lg~~ 324 (454)
.+|+++|.||||||||+|+|++....+++++++|.+...+.+.+. +..+.+|||||+.+..... +.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~~~~~~~ 75 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--------EKEFLVVDLPGIYSLTAHSIDELIARN 75 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--------TEEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--------CceEEEEeCCCccccccCCHHHHHHHH
Confidence 478999999999999999999988777899999998888877654 2369999999996532110 001112
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~s 401 (454)
++ ..+.+|++++|+|++.. ......+.+.++ . ..+|+++|+||+|+.+... ..+.+.+.+. ..+.+++
T Consensus 76 ~~-~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~-~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~S 146 (271)
T 3k53_A 76 FI-LDGNADVIVDIVDSTCL--MRNLFLTLELFE-M----EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTN 146 (271)
T ss_dssp HH-HTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-T----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECB
T ss_pred hh-hccCCcEEEEEecCCcc--hhhHHHHHHHHh-c----CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEE
Confidence 22 12679999999999874 333333333333 2 1399999999999864321 1333433332 4556788
Q ss_pred ccccccHHHHHHHHHhhc
Q 012884 402 SETELSSEDAVKSLSTEG 419 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~ 419 (454)
+....++.+.++.+....
T Consensus 147 a~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMA 164 (271)
T ss_dssp GGGTBTHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 888999999998887655
No 135
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.61 E-value=1.6e-16 Score=148.86 Aligned_cols=155 Identities=11% Similarity=0.017 Sum_probs=109.8
Q ss_pred cccccccCCCCCHHHHHHHH-HcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 247 RDDTDKGLPNAGKSTLLAAI-THAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL-~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
.+|+++|.+|||||||+|+| .+... ...+.+++|.......+... ...+.||||||+.+. ...
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~ 80 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--------PIKFNVWDTAGQEKF-------GGL 80 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE--------EEEEEEEEECSGGGT-------SCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------EEEEEEEeCCChHHH-------hHH
Confidence 47899999999999999994 44323 23666777776555544321 237899999997432 222
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH--hcCCceecc
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTS 402 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~--~~g~~~~sa 402 (454)
....++.+|++++|+|+++..+.+++..|..++..+. .+.|+++|+||+|+.+.... .+..+... ...+.++++
T Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~Sa 156 (221)
T 3gj0_A 81 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQYYDISA 156 (221)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCEEEECBG
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccccc-HHHHHHHHHcCCEEEEEeC
Confidence 3345678999999999998777777777777777653 37899999999999764211 11111222 245678899
Q ss_pred cccccHHHHHHHHHhhcC
Q 012884 403 ETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~~~~ 420 (454)
....++.+.+..+...+.
T Consensus 157 ~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp GGTBTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887663
No 136
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.61 E-value=1.3e-15 Score=146.87 Aligned_cols=163 Identities=14% Similarity=0.083 Sum_probs=103.8
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCC-Cc-eeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcc---
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADY-PF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL--- 321 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~-pf-TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~l--- 321 (454)
.+|+++|.+|||||||+|+|++.+..+..+ +. +|.+...+.+... +.++.||||||+.+.......+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--------NREIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--------TEEEEEEECCGGGGSSCCCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--------CCEEEEEECcCCCCCCCCHHHHHHH
Confidence 478999999999999999999887655443 33 6776666665543 2479999999997654322111
Q ss_pred -cchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCChHHHHH--------HHHHH
Q 012884 322 -GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN-KIDLPEARDRLQ--------SLTEE 391 (454)
Q Consensus 322 -g~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~N-K~Dl~~~~e~~~--------~l~~~ 391 (454)
...+...++.+|++|+|+|++. ....+.. +...+..+......+|.++|+| |+|+.... ..+ ++.+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~-~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQ-AAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTC-CCHHHHH-HHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHH-HHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence 2223346788999999999985 3333333 3344443211112468888887 99998531 111 12223
Q ss_pred HHhcC-----C--ceecccccccHHHHHHHHHhhcC
Q 012884 392 ILKIG-----C--DKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 392 l~~~g-----~--~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+..++ + .++++....++.+.+..+...+.
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence 33322 3 45677788889998888776553
No 137
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=160.55 Aligned_cols=114 Identities=32% Similarity=0.537 Sum_probs=70.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCC---------cccccccEEEecCCCCcccccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---------AEKYSSEATLADLPGLIEGAHL 317 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~---------~~~~~~~i~liDTPGii~~a~~ 317 (454)
.+|++||.||||||||+|+|++.+..+++|||||++|+.+.+......- .......+++|||||+.++++.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~ 102 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN 102 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch
Confidence 4789999999999999999999988779999999999999987642100 0000135999999999999988
Q ss_pred CCcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHHhc
Q 012884 318 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY 360 (454)
Q Consensus 318 ~~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~~~ 360 (454)
+++++..|+.+++.||++++|+|+++ .+|..+++.+..||..+
T Consensus 103 ~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~ 155 (396)
T 2ohf_A 103 GQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLK 155 (396)
T ss_dssp ----CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhh
Confidence 88999999999999999999999975 25677888888877644
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.60 E-value=2.9e-15 Score=135.49 Aligned_cols=153 Identities=21% Similarity=0.140 Sum_probs=99.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC----C---
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----K--- 319 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~----~--- 319 (454)
.+|+++|.+|||||||+|+|++.+......|++|.+.....+ ..+.+|||||+....... +
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 69 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------------KNHKIIDMPGFGFMMGLPKEVQERIK 69 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------------TTEEEEECCCBSCCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec------------CCEEEEECCCccccccCCHHHHHHHH
Confidence 478899999999999999999887666677777765433322 168999999974321100 1
Q ss_pred cccchhhcc-cccccEEEEEEeCCCCCCHhhH-HHH------------HHHHHhcCCCCCCCCEEEEEeCCCCCChH-HH
Q 012884 320 GLGRNFLRH-LRRTRLLVHVIDAAAENPVNDY-RTV------------KEELRMYNPDYLERPFIVVLNKIDLPEAR-DR 384 (454)
Q Consensus 320 ~lg~~fl~~-i~~advll~ViDas~~~~~~d~-~~l------------~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~-e~ 384 (454)
.+...+++. ...++++++|+|.+. .++. ..| ...+.. .+.|+++|+||+|+.... +.
T Consensus 70 ~~~~~~~~~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~ 141 (190)
T 2cxx_A 70 DEIVHFIEDNAKNIDVAVLVVDGKA---APEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNVQEV 141 (190)
T ss_dssp HHHHHHHHHHGGGCCEEEEEEETTH---HHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCHHHH
T ss_pred HHHHHHHHhhhccCCEEEEEEcchh---hhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCcHHHH
Confidence 111223333 566788888888754 2221 111 122221 369999999999998753 23
Q ss_pred HHHHHHHHHh------cCCceecccccccHHHHHHHHHhhc
Q 012884 385 LQSLTEEILK------IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 385 ~~~l~~~l~~------~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+++.+.+.. ..+.++++.+..++.+.++.+...+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 3444443331 1136789999999999999988654
No 139
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=153.40 Aligned_cols=152 Identities=19% Similarity=0.188 Sum_probs=103.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
+|+++|.+|||||||+++|++.+. +..+ .|+......+... ...+.||||||..+ +......
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~--------~~~l~i~Dt~G~~~-------~~~~~~~ 228 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYK--------NISFTVWDVGGQDK-------IRPLWRH 228 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEET--------TEEEEEEECC------------CCSHHH
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecC--------cEEEEEEECCCCHh-------HHHHHHH
Confidence 689999999999999999987653 2322 2544444444432 23799999999643 2333455
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHhc-------CCcee
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCDKV 400 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~~-------g~~~~ 400 (454)
.++.+|++|+|+|+++..+.+....+...+... ....++|++||+||+|+.+... .+++...+... .+.++
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~v 306 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQAT 306 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEEEEC
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEEEEE
Confidence 678899999999999888777766544444321 1124789999999999986532 34444444332 25678
Q ss_pred cccccccHHHHHHHHHhhc
Q 012884 401 TSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 401 sa~~~~~~~e~~~~l~~~~ 419 (454)
++.+..++.+.++.+...+
T Consensus 307 SAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 307 CATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp BTTTTBTHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999988654
No 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.60 E-value=3.2e-16 Score=163.13 Aligned_cols=159 Identities=26% Similarity=0.251 Sum_probs=109.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccch
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 324 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~ 324 (454)
..+|+++|.+|+|||||+|+|++.+.. +.++++||.++....+.+... ..+.||||||+.+...........
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-------~~l~liDTpG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVEK 106 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-------EEEEEEECSSTTCCCTTCCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-------CeEEEEECcCCCcccchhHHHHHH
Confidence 357999999999999999999988764 488999999998888876421 279999999998754443333344
Q ss_pred hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHH---hcCCceec
Q 012884 325 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKVT 401 (454)
Q Consensus 325 fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~---~~g~~~~s 401 (454)
+...++.+|++|+|+|++ . .+....+..++..+ ++|+++|+||+|+...... +..+.+. ...+.+++
T Consensus 107 ~~~~l~~aD~vllVvD~~--~-~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSA--P-TPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHHHHTSCSEEEEECSSS--C-CHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred HHHHHhcCCEEEEEEeCC--C-hHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence 667788999999999992 2 23445556667653 7999999999999875432 2222222 24567889
Q ss_pred ccccccHHHHHHHHHhhcCc
Q 012884 402 SETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 402 a~~~~~~~e~~~~l~~~~~~ 421 (454)
+.+..++.+.++.+...+..
T Consensus 177 Aktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHhhhh
Confidence 99999999999999877743
No 141
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.59 E-value=1.3e-15 Score=150.44 Aligned_cols=156 Identities=17% Similarity=0.099 Sum_probs=108.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||++++++... ...+..||.+.....+..+.. ...+.||||||+.+. .....
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~~l~Dt~G~~~~-------~~~~~ 221 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK------PVNLGLWDTAGLEDY-------DRLRP 221 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTE------EEEEEEEEECCCGGG-------TTTGG
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCE------EEEEEEEeCCCchhh-------hHHHH
Confidence 4789999999999999999997643 456667776555444443211 125679999998543 22344
Q ss_pred cccccccEEEEEEeCCCCCCHhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH-------------HHHHHHH
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 392 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~-~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~-------------~~l~~~l 392 (454)
.+++.+|++++|+|++++.+.+++. .|..++..+. .++|+++|+||+|+....+.. ++..+..
T Consensus 222 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 298 (332)
T 2wkq_A 222 LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 298 (332)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC---CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH
Confidence 5678899999999999876666664 4556666554 279999999999997542211 1222223
Q ss_pred Hhc---CCceecccccccHHHHHHHHHhhc
Q 012884 393 LKI---GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 393 ~~~---g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
... .+.++++.+..++.+.+..+...+
T Consensus 299 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 299 KEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 333 346788889999999998887543
No 142
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.59 E-value=1.4e-15 Score=162.29 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=105.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCC------CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 320 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~------~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~ 320 (454)
.+|++||.||||||||+|+|++.+ +.++.+.+++..++.+.+..+.. .....+.+|||||+.+. ..
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~----~~~~~~~i~Dt~G~e~~----~~ 113 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE----LKECLFHFWDFGGQEIM----HA 113 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCST----TTTCEEEEECCCSCCTT----TT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCC----CceEEEEEEECCcHHHH----HH
Confidence 589999999999999999999876 34445555555555555544321 01247999999996432 22
Q ss_pred ccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHhcC--C
Q 012884 321 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--C 397 (454)
Q Consensus 321 lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~~g--~ 397 (454)
+...| ++.+|++|+|+|++.. ++...|..++..+. .++|+|+|+||+|+....+ ..+++.+.+...+ +
T Consensus 114 ~~~~~---l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~---~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~ 184 (535)
T 3dpu_A 114 SHQFF---MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG---GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRF 184 (535)
T ss_dssp TCHHH---HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS---SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCE
T ss_pred HHHHH---ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC---CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCce
Confidence 33334 4569999999999864 66677778888775 3689999999999976433 2344555555555 6
Q ss_pred ceecccccccHHHHHHHHHhhcCc
Q 012884 398 DKVTSETELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~~~~ 421 (454)
.++++.+..++.+.++.+...+..
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHTC
T ss_pred EEEecCcccCHHHHHHHHHHHHhc
Confidence 778999999999999988876644
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.57 E-value=1.7e-14 Score=148.81 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=107.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeecccee-----eeCCCCCC--c----ccccccEEEecCCCCccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGR-----LDGDPTLG--A----EKYSSEATLADLPGLIEG 314 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~-----v~~~~~~~--~----~~~~~~i~liDTPGii~~ 314 (454)
.+|+++|.+|+|||||+|+|++.... ...++.+|....... +..+.... . ......+.||||||+
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh--- 85 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH--- 85 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC---
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc---
Confidence 47899999999999999999986432 234444443211000 00000000 0 000147999999997
Q ss_pred cccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHH
Q 012884 315 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEE 391 (454)
Q Consensus 315 a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~---~~~l~~~ 391 (454)
+.+...+...+..+|++|+|+|++.+.+..+...+...+..+. .+|+++|+||+|+.+.++. .+++.+.
T Consensus 86 ----~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 86 ----EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp ----GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 3355567778889999999999998765555554445555432 3699999999999876432 3334444
Q ss_pred HHh-----cCCceecccccccHHHHHHHHHhhcC
Q 012884 392 ILK-----IGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 392 l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+.. ..+.++++....++.+.++.+...+.
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 432 24567899999999999999886553
No 144
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.56 E-value=6e-16 Score=151.43 Aligned_cols=167 Identities=18% Similarity=0.201 Sum_probs=99.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC------ccCCCc----------------------eeeeccceeee-----CCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD------IADYPF----------------------TTLMPNLGRLD-----GDP 292 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~------Ia~~pf----------------------TT~~p~~g~v~-----~~~ 292 (454)
..+|+++|.||||||||+|+|++.+.. ++..|. ||.+.....+. ...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999988752 244454 44332111110 000
Q ss_pred ---CC-Cc-------ccccccEEEecCCCCccccc--cCC----cccchhhcccccccEEE-EEEeCCCCCCHhhHHHHH
Q 012884 293 ---TL-GA-------EKYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHLRRTRLLV-HVIDAAAENPVNDYRTVK 354 (454)
Q Consensus 293 ---~~-~~-------~~~~~~i~liDTPGii~~a~--~~~----~lg~~fl~~i~~advll-~ViDas~~~~~~d~~~l~ 354 (454)
.. .. .....+++||||||+.+... +.+ .+...+..+++.++.++ +|+|++.....++...+.
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 00 00 00014799999999976431 011 23334556777777665 799998765555543344
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCChHH-HHHHHHHHHHh-----cCCceecccccccHHHHHHHHHh
Q 012884 355 EELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 355 ~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e-~~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
+++.. .++|+++|+||+|+.+..+ ..+.+...+.. ..+.++++....++.+.++.+..
T Consensus 186 ~~~~~-----~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 186 KEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHCT-----TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHhCC-----CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 44432 4789999999999986433 12222221111 13456788888888888777765
No 145
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=1.1e-14 Score=141.36 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=84.4
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.+|||||||+|+|++.+. .+.+++++|.......+..+ +..+.||||||+.+..... ..+
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~liDTpG~~~~~~~~----~~~ 104 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--------GFTINIIDTPGLVEAGYVN----HQA 104 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--------TEEEEEEECCCSEETTEEC----HHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--------CeeEEEEECCCCCCcccch----HHH
Confidence 4789999999999999999999876 45888999988777766654 2479999999997654332 233
Q ss_pred hcccc------cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 326 LRHLR------RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 326 l~~i~------~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
++.+. .+|++|+|+|+......+....+.+++.........+|+++|+||+|+..
T Consensus 105 ~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 105 LELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 33332 78999999988764322222233444543211112359999999999963
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.55 E-value=1.3e-14 Score=151.65 Aligned_cols=145 Identities=20% Similarity=0.173 Sum_probs=96.1
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC-------------------------------CCceeeeccceeeeCCCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDPTL 294 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~-------------------------------~pfTT~~p~~g~v~~~~~~ 294 (454)
..+|+++|.+|+|||||+++|+.....+.. .+++|++.....+..+
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~--- 93 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE--- 93 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC---
Confidence 458899999999999999999665332211 1456776666555543
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC-------HhhHHHHHHHHHhcCCCCCCC
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYLER 367 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~-------~~d~~~l~~eL~~~~~~~~~k 367 (454)
+.+++||||||+.+ +.......+..+|++|+|||++.+.. .+..+.+. .+.. .+.
T Consensus 94 -----~~~~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~-~~~~-----~~v 155 (439)
T 3j2k_7 94 -----KKHFTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM-LAKT-----AGV 155 (439)
T ss_pred -----CeEEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHH-HHHH-----cCC
Confidence 24799999999843 44556677889999999999998643 23333332 2332 356
Q ss_pred C-EEEEEeCCCCCCh---HHHH----HHHHHHHHhcC--------CceecccccccHHHH
Q 012884 368 P-FIVVLNKIDLPEA---RDRL----QSLTEEILKIG--------CDKVTSETELSSEDA 411 (454)
Q Consensus 368 p-~IvV~NK~Dl~~~---~e~~----~~l~~~l~~~g--------~~~~sa~~~~~~~e~ 411 (454)
| +|+|+||+|+... ++.. +++.+.+..++ +.++++....++.+.
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence 6 8999999999642 2222 33334444444 355677778777764
No 147
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=7.9e-15 Score=133.55 Aligned_cols=159 Identities=19% Similarity=0.188 Sum_probs=91.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC-CccCCCcee-eeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT-~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
+|+++|.+|||||||+++|.+... ....+..|+ .+.....+..... .. ....+.+|||||+.+... + .
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~-~~--~~~~~~i~Dt~G~~~~~~----~---~ 73 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK-RK--RDLVLNVWDFAGREEFYS----T---H 73 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC------------CEEEEEEECSHHHHHT----T---S
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC-CC--CceEEEEEecCCCHHHHH----h---h
Confidence 688999999999999999998642 223333322 2211111111000 00 123789999999854321 2 1
Q ss_pred hcccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHH---HHHHHHHH-hcC----
Q 012884 326 LRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEIL-KIG---- 396 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~---~~l~~~l~-~~g---- 396 (454)
..+++.++++++|+|++++. +.+.+..|..++.... .+.|+++|+||+|+.+..... .+..+.+. ..+
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 23356689999999998762 4555666666555432 368999999999998754322 22222332 233
Q ss_pred --Cceecccccc-cHHHHHHHHHhhc
Q 012884 397 --CDKVTSETEL-SSEDAVKSLSTEG 419 (454)
Q Consensus 397 --~~~~sa~~~~-~~~e~~~~l~~~~ 419 (454)
+.++++.... ++.+.++.+...+
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred hheEEEecccCchhHHHHHHHHHHHH
Confidence 3456777764 7777777665443
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.54 E-value=2.2e-14 Score=151.55 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=102.5
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-------CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 319 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-------~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~ 319 (454)
.+|+++|.+|+|||||+++|++... .....+++|.+.....+.++ +..++||||||+.+
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~i~iiDtPGh~~------ 85 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--------NYRITLVDAPGHAD------ 85 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--------TEEEEECCCSSHHH------
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--------CEEEEEEECCChHH------
Confidence 4789999999999999999998761 12345567777666555543 24799999999833
Q ss_pred cccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhc-
Q 012884 320 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI- 395 (454)
Q Consensus 320 ~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~- 395 (454)
+...+...+..+|++|+|+|++++...+..+.+. .+.. .+.|.++|+||+|+.+... ..+++.+.+...
T Consensus 86 -~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~ 158 (482)
T 1wb1_A 86 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML-ILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH 158 (482)
T ss_dssp -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS
T ss_pred -HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH-HHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc
Confidence 4455677788999999999999876556555543 3443 3688999999999987422 233444444433
Q ss_pred -----CCceecccccccHHHHHHHHHhhc
Q 012884 396 -----GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 -----g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.+.++++....++.+.++.+....
T Consensus 159 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 159 NLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp SGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 345678888999999888887643
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.54 E-value=2.5e-14 Score=139.62 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=85.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCC------ceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 320 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~p------fTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~ 320 (454)
.+|++||.+|||||||+|+|.+.+....+++ .+|............. ....+++||||||+.+.......
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG----GVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC------CCEEEEEEECCCCSCCSCCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC----CeEEEEEEEECCCccccccchhh
Confidence 3688999999999999999998887766663 3444333333222110 01127999999999543211111
Q ss_pred ccc-------hhhcc-------------cccccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 321 LGR-------NFLRH-------------LRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 321 lg~-------~fl~~-------------i~~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
+.. +|..+ -.++|++|+++|.+. +....+... .+++.. .+|+|+|+||+|+.
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~-l~~l~~------~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF-MKRLHE------KVNIIPLIAKADTL 157 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHH-HHHHTT------TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHH-HHHHhc------cCCEEEEEeccCCC
Confidence 100 11111 134789999998765 444455443 344542 69999999999998
Q ss_pred ChHHH---HHHHHHHHHhcC--CceecccccccHHHHHHHHHhhc
Q 012884 380 EARDR---LQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 380 ~~~e~---~~~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
...+. .+.+.+.+...+ +...++....+..+.++.+....
T Consensus 158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 75432 234455555444 44567777777887777776544
No 150
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.53 E-value=1.3e-14 Score=141.15 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=82.7
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCC-ccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~-Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
.+|+++|.+|+|||||+|+|++.+.. +++++++|.++....+... +..++||||||+.+...........+
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~iiDTpG~~~~~~~~~~~~~~i 111 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--------GFTLNIIDTPGLIEGGYINDMALNII 111 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--------TEEEEEEECCCSEETTEECHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--------CeEEEEEECCCCCCCccchHHHHHHH
Confidence 47899999999999999999988753 4778888877665555432 24799999999976533222111111
Q ss_pred hcc--cccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 326 LRH--LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 326 l~~--i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++ .+.+|++|+|+|++... ...+.+. ...+.........+|+++|+||+|+...
T Consensus 112 ~~~~~~~~~d~il~v~~~d~~~~~~~~~~~-~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 112 KSFLLDKTIDVLLYVDRLDAYRVDNLDKLV-AKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHHTTTCEECEEEEEEESSCCCCCHHHHHH-HHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HHHhhcCCCCEEEEEEeCCCCcCCHHHHHH-HHHHHHHhCcccccCEEEEEECcccCCc
Confidence 111 34799999999886532 2233333 3444432100112699999999999754
No 151
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.53 E-value=1.6e-14 Score=133.22 Aligned_cols=158 Identities=19% Similarity=0.072 Sum_probs=104.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|||||||+++|++........|..+.++..+.+.++.. ...+.+|||||..+. ..+ ..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~------~~~~~i~Dt~g~~~~----~~~---~~ 72 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK------TIKAQIWDTAGQERY----RRI---TS 72 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE------EEEEEEEECSSGGGT----TCC---CH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE------EEEEEEEECCCchhh----hhh---hH
Confidence 47899999999999999999987654433344344555555554321 126789999997542 112 22
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceeccc
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 403 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa~ 403 (454)
..++.++++++|+|++...+.++...|..++..+. ....|+++|+||+|+.+..+. .++.++..... .+.++++.
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal 150 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL 150 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCC
Confidence 33457899999999988665666655655555432 236899999999999753221 12223333333 34568888
Q ss_pred ccccHHHHHHHHHhhc
Q 012884 404 TELSSEDAVKSLSTEG 419 (454)
Q Consensus 404 ~~~~~~e~~~~l~~~~ 419 (454)
...+..+.++.+...+
T Consensus 151 ~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEI 166 (199)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8999999998887655
No 152
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.53 E-value=6.9e-14 Score=135.24 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=103.2
Q ss_pred cccccccCC---------CCCHHHHHHHHHcC--CCCccCCCcee--eeccceeeeCCCC----------CCcccccccE
Q 012884 247 RDDTDKGLP---------NAGKSTLLAAITHA--KPDIADYPFTT--LMPNLGRLDGDPT----------LGAEKYSSEA 303 (454)
Q Consensus 247 adVglVG~p---------NaGKSTLlnaL~~~--~~~Ia~~pfTT--~~p~~g~v~~~~~----------~~~~~~~~~i 303 (454)
.+|++||.+ |||||||+|+|++. ...+.++..|| .+.....+.++.. ... ....+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~l 97 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC--VECKM 97 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----------CE
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC--cEEEE
Confidence 478999999 99999999999985 33445566665 3332222221100 000 12368
Q ss_pred EEec------CCCCcccccc--------------------------CCcccchhhcccc-----cccEEEEEEeCCCC--
Q 012884 304 TLAD------LPGLIEGAHL--------------------------GKGLGRNFLRHLR-----RTRLLVHVIDAAAE-- 344 (454)
Q Consensus 304 ~liD------TPGii~~a~~--------------------------~~~lg~~fl~~i~-----~advll~ViDas~~-- 344 (454)
.||| |||....... ..++...|.+++. .||++|+|+|++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 8888 5554322110 0112222333332 69999999999987
Q ss_pred CCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHHHHHh---cCCceecccccccHHHHHHHHHhh
Q 012884 345 NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 345 ~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~~l~~---~g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
.+.+.+..|..++..+.. ..+.|+++|+||+|+.+.++. ++..+.... ..+.++++....++.+.+..+...
T Consensus 178 ~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp -CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 788887777776654310 136899999999999865443 444444333 345678999999999999988754
No 153
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=2.7e-14 Score=132.89 Aligned_cols=118 Identities=18% Similarity=0.162 Sum_probs=74.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc--cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I--a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~ 323 (454)
..+|.++|.+|||||||+++|++..... ..+..|+.... . ...+.+|||||+.+.. ....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------~--------~~~~~l~Dt~G~~~~~----~~~~ 73 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------D--------GSGVTLVDFPGHVKLR----YKLS 73 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------G--------GSSCEEEECCCCGGGT----HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------e--------CceEEEEECCCcHHHH----HHHH
Confidence 3578899999999999999999876322 22222221111 0 2378999999995431 1112
Q ss_pred hhh-cccccccEEEEEEeCC-CCCCHhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCh
Q 012884 324 NFL-RHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 324 ~fl-~~i~~advll~ViDas-~~~~~~d~~~l~~eL~~~~~--~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++ ..+..+|++|+|+|++ +..+..+...+..++..... ...+.|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 222 2234489999999999 66665555444443332100 0147999999999999865
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.51 E-value=3.3e-15 Score=159.62 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=111.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
.+|+++|.+|+|||||+++|++.+......+++|.+.....+.... +..++||||||+.. +.....
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-------g~~i~~iDTPGhe~-------f~~~~~ 70 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-------GEKITFLDTPGHAA-------FSAMRA 70 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-------SSCCBCEECSSSCC-------TTTSBB
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-------CCEEEEEECCChHH-------HHHHHH
Confidence 5789999999999999999998765556778888877766665421 23789999999743 444455
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--HHHHHHHH---HHh----cCC
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEE---ILK----IGC 397 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e--~~~~l~~~---l~~----~g~ 397 (454)
+.++.+|++|+|+|++++...+..+.+.. +.. .+.|+++|+||+|+.+... ..+++.+. ... ..+
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~-~~~-----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~i 144 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQH-AKD-----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQA 144 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHH-HHT-----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEE
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHH-HHH-----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceE
Confidence 67788999999999999877777666543 432 4689999999999975321 11112111 011 235
Q ss_pred ceecccccccHHHHHHHHHhhcC
Q 012884 398 DKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
.++++.+..++.+.++.+...+.
T Consensus 145 v~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCchhHHHHHHHhhh
Confidence 67899999999999998876543
No 155
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.51 E-value=2.5e-14 Score=141.23 Aligned_cols=133 Identities=21% Similarity=0.266 Sum_probs=77.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCC-----Cc-cCCC---ceeeecc---------ceeeeCCCCC-------------
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKP-----DI-ADYP---FTTLMPN---------LGRLDGDPTL------------- 294 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~-----~I-a~~p---fTT~~p~---------~g~v~~~~~~------------- 294 (454)
+..|+++|.||||||||+|+|++.+. .+ +..| .||..+. .+.+...+..
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 45799999999999999999998864 22 3344 3333321 0000000000
Q ss_pred -------C--------------cccccccEEEecCCCCcccccc------CCcccchhhcccccccEEEEEEeCCC-CCC
Q 012884 295 -------G--------------AEKYSSEATLADLPGLIEGAHL------GKGLGRNFLRHLRRTRLLVHVIDAAA-ENP 346 (454)
Q Consensus 295 -------~--------------~~~~~~~i~liDTPGii~~a~~------~~~lg~~fl~~i~~advll~ViDas~-~~~ 346 (454)
+ ......+++||||||+.+.... .+.+...+..+++.+|++++|+|++. ...
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 0 0001247999999999763311 12233456678899999999999744 332
Q ss_pred HhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH
Q 012884 347 VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 383 (454)
Q Consensus 347 ~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e 383 (454)
..+...+...+.. .++|+++|+||+|+....+
T Consensus 184 ~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 184 NSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp TCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSC
T ss_pred hhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcch
Confidence 2333334444442 4789999999999986533
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.50 E-value=3e-14 Score=130.91 Aligned_cols=157 Identities=18% Similarity=0.075 Sum_probs=103.6
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
..+|+++|.+|||||||+++|++........+..+.+...+.+..+.. ...+.+|||||+.+. .. ..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~------~~~~~i~Dt~g~~~~----~~---~~ 95 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK------TIKAQIWDTAGLERY----RA---IT 95 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE------EEEEEEEEECSCCSS----SC---CC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE------EEEEEEEECCCCcch----hh---hh
Confidence 357899999999999999999988765444454455555566654321 125678999998542 11 22
Q ss_pred hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHhc--CCceecc
Q 012884 326 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 402 (454)
Q Consensus 326 l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~~--g~~~~sa 402 (454)
...++.++.+++|+|.+...+.+++..|..++..+. ....|+++|+||+|+.+..+. .+..++..... .+.++++
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sa 173 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 334567899999999987655555555555555432 236899999999999753221 22222333333 3456788
Q ss_pred cccccHHHHHHHHHh
Q 012884 403 ETELSSEDAVKSLST 417 (454)
Q Consensus 403 ~~~~~~~e~~~~l~~ 417 (454)
.+..+..+.++.+.+
T Consensus 174 ld~~~v~~l~~~l~~ 188 (191)
T 1oix_A 174 LDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 888888888887764
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5.9e-14 Score=152.39 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=95.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC-------------------------------CCceeeeccceeeeCCCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDPTL 294 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~-------------------------------~pfTT~~p~~g~v~~~~~~ 294 (454)
..+|+++|.+|+|||||+|+|++....+.. .+++|++.....+...
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~--- 243 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--- 243 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS---
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC---
Confidence 458999999999999999999977544432 1466777766666543
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-------CHhhHHHHHHHHHhcCCCCCC-
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLE- 366 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-------~~~d~~~l~~eL~~~~~~~~~- 366 (454)
..+++||||||+. .+...+...++.+|++|+|||++.+. ..+..+.+ ..+.. .+
T Consensus 244 -----~~~~~iiDTPG~e-------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~-----lgi 305 (611)
T 3izq_1 244 -----RANFTIVDAPGHR-------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASS-----LGI 305 (611)
T ss_dssp -----SCEEEEEECCSSS-------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHT-----TTC
T ss_pred -----CceEEEEECCCCc-------ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHH-----cCC
Confidence 2489999999983 35556778889999999999998631 11222222 22332 23
Q ss_pred CCEEEEEeCCCCCCh-HHH----HHHHHHHHHhcCC-------ceecccccccHHH
Q 012884 367 RPFIVVLNKIDLPEA-RDR----LQSLTEEILKIGC-------DKVTSETELSSED 410 (454)
Q Consensus 367 kp~IvV~NK~Dl~~~-~e~----~~~l~~~l~~~g~-------~~~sa~~~~~~~e 410 (454)
+|+|||+||+|+.+. .+. .+++...+..+++ .++++....++.+
T Consensus 306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~e 361 (611)
T 3izq_1 306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 361 (611)
T ss_dssp CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSS
T ss_pred CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccc
Confidence 459999999999862 222 2333444444433 4567766666553
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3e-14 Score=129.72 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=71.1
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 323 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~ 323 (454)
.+|+++|.+|||||||+|+|++..... ...+.+|.+. . ...+.+|||||+.+.. ..+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~--------~~~~~l~Dt~G~~~~~---~~~~~ 110 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D--------GSGVTLVDFPGHVKLR---YKLSD 110 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C--------CTTCSEEEETTCCBSS---CCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c--------CCeEEEEECCCCchHH---HHHHH
Confidence 478999999999999999999875322 1122222211 1 2378999999995532 11122
Q ss_pred hhhcccccccEEEEEEeCC-CCCCHhhHHHHHHHHHhc-CC-CCCCCCEEEEEeCCCCCCh
Q 012884 324 NFLRHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMY-NP-DYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas-~~~~~~d~~~l~~eL~~~-~~-~~~~kp~IvV~NK~Dl~~~ 381 (454)
.+...++.+|++|+|+|++ +..+......+...+... .. ...+.|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 2333456699999999998 443333333332222211 00 1137999999999999864
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.49 E-value=5.5e-14 Score=150.16 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=89.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc----------------cC------CCceeeeccceeeeCCCCCCcccccccE
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI----------------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEA 303 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I----------------a~------~pfTT~~p~~g~v~~~~~~~~~~~~~~i 303 (454)
+++|+++|.+|||||||+|+|+.....+ .+ ..++|.......+.+. +..+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~i 84 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--------DYLI 84 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--------TEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--------CEEE
Confidence 5689999999999999999997322211 11 1344555555555443 2479
Q ss_pred EEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--
Q 012884 304 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-- 381 (454)
Q Consensus 304 ~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~-- 381 (454)
.||||||+.+ +...+.++++.+|++|+|+|++.+...+....|. .+.. .++|+++|+||+|+...
T Consensus 85 ~liDTPG~~d-------f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~-----~~iPiivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 85 NLLDTPGHAD-------FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL-----RHTPIMTFINKMDRDTRPS 151 (528)
T ss_dssp EEECCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT-----TTCCEEEEEECTTSCCSCH
T ss_pred EEEECCCchh-------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH-----cCCCEEEEEeCCCCccccH
Confidence 9999999844 4456778889999999999999987777766654 4443 37899999999999754
Q ss_pred HHHHHHHHHHH
Q 012884 382 RDRLQSLTEEI 392 (454)
Q Consensus 382 ~e~~~~l~~~l 392 (454)
.+.++++.+.+
T Consensus 152 ~~~l~ei~~~l 162 (528)
T 3tr5_A 152 IELLDEIESIL 162 (528)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 23344444433
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.49 E-value=7.5e-14 Score=147.31 Aligned_cols=145 Identities=15% Similarity=0.123 Sum_probs=90.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-------------------------------cCCCceeeeccceeeeCCCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTL 294 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-------------------------------a~~pfTT~~p~~g~v~~~~~~ 294 (454)
..+|+++|.+|+|||||+|+|+.....+ ....++|++.....+...
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--- 109 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH--- 109 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC---
Confidence 4589999999999999999997652211 112355555554445432
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCH------hhHHHHHHHHHhcCCCCCCCC
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLERP 368 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~------~d~~~l~~eL~~~~~~~~~kp 368 (454)
..++.||||||+. .+.......++.+|++|+|||++.+..+ .+.......+... ..+|
T Consensus 110 -----~~~~~iiDTPG~~-------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~~~ 173 (483)
T 3p26_A 110 -----RANFTIVDAPGHR-------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GIHN 173 (483)
T ss_dssp -----SCEEEEECCCCCG-------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TCCC
T ss_pred -----CceEEEEECCCcH-------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CCCc
Confidence 2489999999994 3555677788999999999999986322 1222222223321 2367
Q ss_pred EEEEEeCCCCCCh-HHHHH----HHHHHHHhcC-------CceecccccccHH
Q 012884 369 FIVVLNKIDLPEA-RDRLQ----SLTEEILKIG-------CDKVTSETELSSE 409 (454)
Q Consensus 369 ~IvV~NK~Dl~~~-~e~~~----~l~~~l~~~g-------~~~~sa~~~~~~~ 409 (454)
+|+|+||+|+.+. ++..+ ++.+.+..++ +.++++....++.
T Consensus 174 iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~ 226 (483)
T 3p26_A 174 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 226 (483)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred EEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence 9999999999863 22233 3333444333 3556776666654
No 161
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.48 E-value=7e-14 Score=153.93 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=84.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc-cCCCce--------------eeecccee-------------eeCCC------
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFT--------------TLMPNLGR-------------LDGDP------ 292 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfT--------------T~~p~~g~-------------v~~~~------ 292 (454)
.+|+++|.||||||||+|+|++.+..+ +..|.| |++...+. +....
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l 149 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKL 149 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHH
Confidence 478999999999999999999987644 556666 33211100 00000
Q ss_pred -------C---------CCcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHH
Q 012884 293 -------T---------LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEE 356 (454)
Q Consensus 293 -------~---------~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~e 356 (454)
. .........++||||||+.+... ....+..+++.||++|+|+|++.+.+..+...|.+.
T Consensus 150 ~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 150 EQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred hhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0 00000003699999999976421 233456778899999999999988877877766555
Q ss_pred HHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 357 LRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 357 L~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
+.. .++|+++|+||+|+...
T Consensus 226 l~~-----~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 226 IKG-----RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTT-----SCCCEEEEEECGGGGGG
T ss_pred HHh-----hCCCEEEEEECcccccc
Confidence 542 36789999999999754
No 162
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.48 E-value=1.2e-13 Score=142.74 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=104.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeC-----------CCCCC--cccc--cccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~-----------~~~~~--~~~~--~~~i~liD 307 (454)
..+|+++|.+|+|||||+++|++..... ...++.|++........ ..... ...+ ...+.|||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 3578999999999999999999754321 11244455432221111 00000 0000 14799999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--- 383 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e--- 383 (454)
|||+.+ +...+++.+..+|++|+|||++++. ..+..+.+. .+..+. .+|+++|+||+|+.+..+
T Consensus 90 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~~~----~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 90 APGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-ALQIIG----QKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp CSSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HHHHHT----CCCEEEEEECGGGSCHHHHHH
T ss_pred CCChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HHHHcC----CCcEEEEEECccCCCHHHHHH
Confidence 999843 4445677788899999999999865 344444433 333321 368999999999987542
Q ss_pred HHHHHHHHHHh-----cCCceecccccccHHHHHHHHHhhcC
Q 012884 384 RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 384 ~~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
..+++.+.+.. ..+.++++....++.+.++.+...+.
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 34455555543 34567788899999999999886553
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.47 E-value=1.1e-13 Score=142.57 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=85.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcC---CCC---ccC-----------CCceeeeccceeeeCCCCCCcccccccEEEecC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA---KPD---IAD-----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 308 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~---~~~---Ia~-----------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDT 308 (454)
..+|+++|.+|+|||||+++|++. ... ... ..+.|++.....+... ..++.||||
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~~~iiDt 82 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVDC 82 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEEC
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC--------CeEEEEEEC
Confidence 357899999999999999999873 110 000 1234444332223321 247999999
Q ss_pred CCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHHH-
Q 012884 309 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ- 386 (454)
Q Consensus 309 PGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~~- 386 (454)
||+.+ +.......+..+|++|+|+|++++...+..+.+ ..+.. .+.| +++|+||+|+.+..+..+
T Consensus 83 pG~~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l-~~~~~-----~~ip~iivviNK~Dl~~~~~~~~~ 149 (405)
T 2c78_A 83 PGHAD-------YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFMNKVDMVDDPELLDL 149 (405)
T ss_dssp CCSGG-------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCCCHHHHHH
T ss_pred CChHH-------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEECccccCcHHHHHH
Confidence 99853 344566778899999999999987665554444 44443 3678 889999999985333222
Q ss_pred ---HHHHHHHhcC
Q 012884 387 ---SLTEEILKIG 396 (454)
Q Consensus 387 ---~l~~~l~~~g 396 (454)
++.+.+...+
T Consensus 150 ~~~~~~~~l~~~~ 162 (405)
T 2c78_A 150 VEMEVRDLLNQYE 162 (405)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 4445555554
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.46 E-value=2.1e-13 Score=140.77 Aligned_cols=163 Identities=17% Similarity=0.107 Sum_probs=98.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc---cCCCceeeeccceeeeC-----------CCCCC--cccc--cccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I---a~~pfTT~~p~~g~v~~-----------~~~~~--~~~~--~~~i~liD 307 (454)
..+|+++|.+|+|||||+++|++..... ...++.|++........ ..... ...+ ...+.|||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 3578999999999999999999754322 11244455432221110 00000 0000 14799999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---H
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---D 383 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~---e 383 (454)
|||+.+ +...+++.+..+|++|+|+|++++. ..+..+.+. .++.+ ..+|+++|+||+|+.+.. +
T Consensus 88 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~l----~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 88 SPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-ALEIL----GIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp CSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-HHHHT----TCCCEEEEEECTTSSCTTTTTT
T ss_pred CCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-HHHHc----CCCeEEEEEEccCCCCHHHHHH
Confidence 999843 4445667788899999999999865 344444432 33332 236899999999998643 2
Q ss_pred HHHHHHHHHHh-----cCCceecccccccHHHHHHHHHhhcC
Q 012884 384 RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 384 ~~~~l~~~l~~-----~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
..+++.+.+.. ..+.++++....++.+.++.+...+.
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 45556655543 34567888899999999999886553
No 165
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.46 E-value=2.1e-13 Score=147.52 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=103.9
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCcc---------C------CCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDIA---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~Ia---------~------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
.+++|+++|.+|+|||||+++|+.....+. + ..+.|+......+.+... .. ....+.|||||
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~-dg--~~~~inliDTP 81 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK-DG--NTYKLHLIDTP 81 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT-TS--CEEEEEEECCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC-CC--CeEEEEEEECC
Confidence 357899999999999999999976422221 1 122343333333322110 00 01378899999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHH
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT 389 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~ 389 (454)
|+.+ +.....+.++.||++|+|+|++++...+....|...+. .+.|+++|+||+|+..+. .++..
T Consensus 82 Gh~d-------F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~v~ 146 (600)
T 2ywe_A 82 GHVD-------FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDRVK 146 (600)
T ss_dssp CSGG-------GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHHH
T ss_pred CcHh-------HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHHHH
Confidence 9954 44456677889999999999999887887777766554 378999999999998642 12222
Q ss_pred HHHH-hcC-----CceecccccccHHHHHHHHHhhcC
Q 012884 390 EEIL-KIG-----CDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 390 ~~l~-~~g-----~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+.+. .++ +..+++.+..++.+.++.+...+.
T Consensus 147 ~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 147 KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2332 233 567889999999999999887664
No 166
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.46 E-value=7.3e-14 Score=143.95 Aligned_cols=97 Identities=32% Similarity=0.507 Sum_probs=81.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCC--------Ccc-cccccEEEecCCCCccccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL--------GAE-KYSSEATLADLPGLIEGAH 316 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~--------~~~-~~~~~i~liDTPGii~~a~ 316 (454)
..||+||.||||||||+|+|++.+. .+++|||||++|+.|.+...... ... .....+.++||||+..+++
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 3689999999999999999999887 67999999999999998764200 000 0012589999999999999
Q ss_pred cCCcccchhhcccccccEEEEEEeCCC
Q 012884 317 LGKGLGRNFLRHLRRTRLLVHVIDAAA 343 (454)
Q Consensus 317 ~~~~lg~~fl~~i~~advll~ViDas~ 343 (454)
.+++++..|+.+++.+|.+++|+|+..
T Consensus 101 ~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 101 TGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888999999999999999999999975
No 167
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.45 E-value=2e-13 Score=147.68 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=101.6
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccC---------------CCceeeeccceeeeCCCCCCcccccccEEEecCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 310 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~---------------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPG 310 (454)
+++|+++|.+++|||||+++|+.....+.. ..+.|+......+.+... .. ....+.||||||
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~-~g--~~~~l~liDTPG 80 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS-DG--ETYQLNFIDTPG 80 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT-TS--CEEEEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC-CC--CeEEEEEEECCC
Confidence 568999999999999999999864322211 123344333333332210 00 013789999999
Q ss_pred CccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHH
Q 012884 311 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSL 388 (454)
Q Consensus 311 ii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~l 388 (454)
+.+ +.....+.++.||++|+|+|++++...+....|...+. .+.|+|+|+||+|+..+. +..+++
T Consensus 81 h~d-------F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~~~~v~~ei 147 (599)
T 3cb4_D 81 HVD-------FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAADPERVAEEI 147 (599)
T ss_dssp CGG-------GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCCHHHHHHHH
T ss_pred chH-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCcccccHHHHHHHH
Confidence 954 44456677888999999999999887787777766554 378999999999998642 223334
Q ss_pred HHHHHh--cCCceecccccccHHHHHHHHHhhcC
Q 012884 389 TEEILK--IGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 389 ~~~l~~--~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
.+.+.. ..+..+++.+..++.+.++.+...+.
T Consensus 148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 333211 12567899999999999998887654
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.45 E-value=3.3e-13 Score=140.47 Aligned_cols=145 Identities=19% Similarity=0.111 Sum_probs=89.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-----------cCCCceeeecc----------------------ceeeeCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-----------ADYPFTTLMPN----------------------LGRLDGDP 292 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-----------a~~pfTT~~p~----------------------~g~v~~~~ 292 (454)
..+|+++|.+|+|||||+++|++....+ +.+++||.+.. ...+...
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~- 102 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA- 102 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS-
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC-
Confidence 3578999999999999999998765322 22344442211 1111111
Q ss_pred CCCcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEE
Q 012884 293 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV 372 (454)
Q Consensus 293 ~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV 372 (454)
..++.||||||+.+ +.......+..+|++|+|+|++.+...+..+.+ ..+... .-+|+|+|
T Consensus 103 -------~~~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l-~~~~~~----~~~~iIvv 163 (434)
T 1zun_B 103 -------KRKFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASLL----GIKHIVVA 163 (434)
T ss_dssp -------SEEEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHHT----TCCEEEEE
T ss_pred -------CceEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHHc----CCCeEEEE
Confidence 24799999999843 444566678899999999999987655554443 334332 12468999
Q ss_pred EeCCCCCCh-HHH----HHHHHHHHHhcC-------CceecccccccHHH
Q 012884 373 LNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSED 410 (454)
Q Consensus 373 ~NK~Dl~~~-~e~----~~~l~~~l~~~g-------~~~~sa~~~~~~~e 410 (454)
+||+|+.+. ++. .+++.+.+..++ +.++++....++.+
T Consensus 164 iNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 164 INKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred EEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 999999863 232 234444455555 23456666666554
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.44 E-value=1.4e-14 Score=156.83 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=74.8
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCCc-c------------------------------CCCceeeeccceeeeCCCC
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPDI-A------------------------------DYPFTTLMPNLGRLDGDPT 293 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~I-a------------------------------~~pfTT~~p~~g~v~~~~~ 293 (454)
.+.+|+++|.+|+|||||+|+|+.....+ . ..+++|++.....+...
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-- 253 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-- 253 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC--
Confidence 34579999999999999999996532111 0 13466776665555432
Q ss_pred CCcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-------CHhhHHHHHHHHHhcCCCCCC
Q 012884 294 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLE 366 (454)
Q Consensus 294 ~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-------~~~d~~~l~~eL~~~~~~~~~ 366 (454)
+..+.||||||+.+ +.......+..||++|+|||++.+. ..+..+.+ ..+.. .+
T Consensus 254 ------~~~i~iiDTPGh~~-------f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~-----lg 314 (592)
T 3mca_A 254 ------KKIYEIGDAPGHRD-------FISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRA-----LG 314 (592)
T ss_dssp -----------CCEEESSSE-------EEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHH-----SS
T ss_pred ------CeEEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHH-----cC
Confidence 24799999999953 3445567778899999999998643 23333333 23332 35
Q ss_pred CC-EEEEEeCCCCCCh-HHHHH----HHHHHH-HhcCC-------ceecccccccHH
Q 012884 367 RP-FIVVLNKIDLPEA-RDRLQ----SLTEEI-LKIGC-------DKVTSETELSSE 409 (454)
Q Consensus 367 kp-~IvV~NK~Dl~~~-~e~~~----~l~~~l-~~~g~-------~~~sa~~~~~~~ 409 (454)
.| +|+|+||+|+.+. .+.++ ++.+.+ ...++ .++++.+..++.
T Consensus 315 ip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 315 ISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred CCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 65 8999999999862 23333 344444 33343 456777776665
No 170
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.44 E-value=5.6e-15 Score=151.06 Aligned_cols=166 Identities=20% Similarity=0.165 Sum_probs=110.8
Q ss_pred eCCceeEEEecCCc-----------eecc-ccCcCc---c--eeeecCCCCCCCccccchhhhccccccccccccccccc
Q 012884 190 PVPLGTVVKHKRGK-----------LFSD-LAHPGD---E--VLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 252 (454)
Q Consensus 190 ~vPvgtvv~~~~~~-----------~~~d-l~~~g~---~--~i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglV 252 (454)
++|+.+|+||.|-. .+.+ +.+.|- . .+||+.|.|...+.+...... . -.+|+++
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~------~---~~~i~~v 168 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR------E---GGDVYVV 168 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH------T---TSCEEEE
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc------c---cCcEEEE
Confidence 57999999997631 0111 233442 2 278888877655433221100 1 1368999
Q ss_pred cCCCCCHHHHHHHHHcC------CCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 253 GLPNAGKSTLLAAITHA------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 253 G~pNaGKSTLlnaL~~~------~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
|.||||||||+|+|++. ...++++|+||++.....+. ..+.++||||+.........+....+
T Consensus 169 G~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 169 GCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-----------SGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-----------TTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred cCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-----------CCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 99999999999999987 34558999999987665432 36899999999877655556666777
Q ss_pred ccc---ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 327 RHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 327 ~~i---~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++ ++.+.++|++|+........+..+ +.+. ..+.|+++++||+|....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l-~~l~-----~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLARL-DYIK-----GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEE-EEEE-----SSSEEEEEEECTTSCEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEEE-EEcc-----CCCceEEEEecCCccccc
Confidence 777 889999999998532111111110 1111 136899999999998764
No 171
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=1.6e-13 Score=147.18 Aligned_cols=131 Identities=21% Similarity=0.336 Sum_probs=82.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC---ccCCCceeeeccceeeeCCC-------C-----------C---C------
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP-------T-----------L---G------ 295 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~---Ia~~pfTT~~p~~g~v~~~~-------~-----------~---~------ 295 (454)
...|+++|.+|||||||+|+|++.+.. +++.|.||... +....+. . . +
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCCTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 457899999999999999999998763 57777775421 1111000 0 0 0
Q ss_pred ------cccccccEEEecCCCCccccc--cCCcc--cchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCC
Q 012884 296 ------AEKYSSEATLADLPGLIEGAH--LGKGL--GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 365 (454)
Q Consensus 296 ------~~~~~~~i~liDTPGii~~a~--~~~~l--g~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~ 365 (454)
...+..+++||||||+.+... .++.+ .......++++|++|+|+|++.....++...+.+.+.. .
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~ 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-----H 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----C
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----c
Confidence 000003699999999976322 22222 12334567889999999999875333444444444442 3
Q ss_pred CCCEEEEEeCCCCCChHH
Q 012884 366 ERPFIVVLNKIDLPEARD 383 (454)
Q Consensus 366 ~kp~IvV~NK~Dl~~~~e 383 (454)
+.|+++|+||+|+...++
T Consensus 218 ~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGGEEEEEECGGGSCHHH
T ss_pred CCCEEEEEECCCccCHHH
Confidence 689999999999997644
No 172
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.43 E-value=4.6e-13 Score=137.84 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=85.9
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCc--c--------------CCCceeeeccceeeeCCCCCCcccccccEEEecCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDI--A--------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 310 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~I--a--------------~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPG 310 (454)
.+|+++|.+|+|||||+++|++..... + ...+.|++.....+... ...+.||||||
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------~~~~~iiDtpG 75 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCPG 75 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECSS
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------CeEEEEEECCC
Confidence 378999999999999999998741100 0 02344555433223221 24799999999
Q ss_pred CccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHH----
Q 012884 311 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL---- 385 (454)
Q Consensus 311 ii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~---- 385 (454)
+.+ +.......+..+|++|+|+|++.+...+..+.+ ..+.. .+.| +++|+||+|+.+..+..
T Consensus 76 ~~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~~ 142 (397)
T 1d2e_A 76 HAD-------YVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQDSEMVELVE 142 (397)
T ss_dssp HHH-------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSCHHHHHHHH
T ss_pred hHH-------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCCHHHHHHHH
Confidence 854 333456678889999999999987766666555 44443 3678 68999999998533322
Q ss_pred HHHHHHHHhcC
Q 012884 386 QSLTEEILKIG 396 (454)
Q Consensus 386 ~~l~~~l~~~g 396 (454)
+++.+.+...+
T Consensus 143 ~~~~~~l~~~~ 153 (397)
T 1d2e_A 143 LEIRELLTEFG 153 (397)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 34455555555
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.43 E-value=2.5e-13 Score=138.94 Aligned_cols=141 Identities=11% Similarity=0.058 Sum_probs=95.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhhc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 327 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~ 327 (454)
.|+++|.+|+|||||+++|+ ..++|++.....++.. ..++.||||||+.+ +......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~--------~~~i~iiDtPGh~~-------f~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE--------GRNMVFVDAHSYPK-------TLKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS--------SSEEEEEECTTTTT-------CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC--------CeEEEEEECCChHH-------HHHHHHH
Confidence 78999999999999999998 2356665555444432 24799999999843 4445666
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCE-EEEEe-CCCCCChHH---HHHHHHHHHHhcC-----C
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN-KIDLPEARD---RLQSLTEEILKIG-----C 397 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~-IvV~N-K~Dl~~~~e---~~~~l~~~l~~~g-----~ 397 (454)
.++.+|++|+|+| +.+...+. +.+...+.. .+.|. |+|+| |+|+ +.+. ..+++.+.+...+ +
T Consensus 80 ~~~~aD~ailVvd-~~g~~~qt-~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~i 151 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAHT-GECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWEC 151 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHHH-HHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEE
T ss_pred HHHHCCEEEEEEc-CCCCcHHH-HHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 7788999999999 65543333 333344443 36777 99999 9999 5422 1234444444332 3
Q ss_pred ce--ecccc---cccHHHHHHHHHhhc
Q 012884 398 DK--VTSET---ELSSEDAVKSLSTEG 419 (454)
Q Consensus 398 ~~--~sa~~---~~~~~e~~~~l~~~~ 419 (454)
.+ +++.. ..++.+.++.+...+
T Consensus 152 i~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 152 ISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp EECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred EecccccccCcCCCCHHHHHHHHHhhc
Confidence 45 77777 888888887776543
No 174
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.43 E-value=2.7e-13 Score=136.49 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=96.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccc---
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR--- 323 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~--- 323 (454)
+|.++|..|||||||++++.+....- .....+|.......+.. ..+++||||||+.+. ..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~---------~v~LqIWDTAGQErf-------~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST---------LIDLAVMELPGQLNY-------FEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECS---------SSCEEEEECCSCSSS-------CCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEcc---------EEEEEEEECCCchhc-------cchhh
Confidence 46789999999999999987543211 11223344333333311 137999999999543 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHH---HhcCCCCCCCCEEEEEeCCCCCChHHH-------HHHHHHHHH
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL---RMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEIL 393 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL---~~~~~~~~~kp~IvV~NK~Dl~~~~e~-------~~~l~~~l~ 393 (454)
....+++.++++|+|+|+++. ..+....|.+++ ..+. .+.|+++|+||+|+....++ ..+..+.+.
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la 140 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELL 140 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHH
Confidence 123456889999999999987 444445554433 3333 36899999999999875322 122222333
Q ss_pred hc-------CCceecccccccHHHHHHHHHhhcC
Q 012884 394 KI-------GCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 394 ~~-------g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
+. .+.++++.. .++.++|..+...+-
T Consensus 141 ~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 141 ELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp SSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred hhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 32 345778876 579999998887664
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.42 E-value=1.6e-13 Score=143.98 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=88.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCcc-------------------------C------CCceeeeccceeeeCCCCCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTLG 295 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia-------------------------~------~pfTT~~p~~g~v~~~~~~~ 295 (454)
.+|+++|.+|+|||||+|+|++....+. + ..++|++.....+...
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~---- 83 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS----
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC----
Confidence 4789999999999999999986421110 1 1345555544444432
Q ss_pred cccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCH-------hhHHHHHHHHHhcCCCCCCCC
Q 012884 296 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-------NDYRTVKEELRMYNPDYLERP 368 (454)
Q Consensus 296 ~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~-------~d~~~l~~eL~~~~~~~~~kp 368 (454)
..+++||||||+. .+.......+..+|++|+|||++++... +..+.+ ..+.. .+.|
T Consensus 84 ----~~~~~iiDtPGh~-------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~-----~~v~ 146 (458)
T 1f60_A 84 ----KYQVTVIDAPGHR-------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT-----LGVR 146 (458)
T ss_dssp ----SEEEEEEECCCCT-------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH-----TTCC
T ss_pred ----CceEEEEECCCcH-------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH-----cCCC
Confidence 2479999999984 3445567778999999999999864211 333322 22332 3555
Q ss_pred -EEEEEeCCCCCC-hHHHH----HHHHHHHHhcC-------CceecccccccH
Q 012884 369 -FIVVLNKIDLPE-ARDRL----QSLTEEILKIG-------CDKVTSETELSS 408 (454)
Q Consensus 369 -~IvV~NK~Dl~~-~~e~~----~~l~~~l~~~g-------~~~~sa~~~~~~ 408 (454)
+|+|+||+|+.+ .++.+ +++.+.+...+ +.++++....++
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 899999999984 22322 33444444444 334555555554
No 176
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.40 E-value=4e-13 Score=139.97 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=86.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCcc-------------------------C------CCceeeeccceeeeCCCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTL 294 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia-------------------------~------~pfTT~~p~~g~v~~~~~~ 294 (454)
..+|+++|.+|+|||||+++|+.....+. + ..++|++.....+...
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~--- 82 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--- 82 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS---
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC---
Confidence 35789999999999999999986421110 0 2456666555445432
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC------CHhhHHHHHHHHHhcCCCCCCCC
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERP 368 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~------~~~d~~~l~~eL~~~~~~~~~kp 368 (454)
..++.||||||+.+ +.......+..+|++|+|+|++++. ...+.+.....+... .-.+
T Consensus 83 -----~~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~----~~~~ 146 (435)
T 1jny_A 83 -----KYFFTIIDAPGHRD-------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM----GLDQ 146 (435)
T ss_dssp -----SCEEEECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT----TCTT
T ss_pred -----CeEEEEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc----CCCe
Confidence 24799999999854 4445677889999999999999841 111222222333322 1246
Q ss_pred EEEEEeCCCCCCh---HH----HHHHHHHHHHhcC-------CceecccccccHH
Q 012884 369 FIVVLNKIDLPEA---RD----RLQSLTEEILKIG-------CDKVTSETELSSE 409 (454)
Q Consensus 369 ~IvV~NK~Dl~~~---~e----~~~~l~~~l~~~g-------~~~~sa~~~~~~~ 409 (454)
+|+|+||+|+.+. ++ ..+++.+.+...+ +.++++....++.
T Consensus 147 iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 147 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred EEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 8999999999862 22 2345555565555 3345655555543
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.40 E-value=1.2e-12 Score=120.83 Aligned_cols=156 Identities=21% Similarity=0.176 Sum_probs=94.2
Q ss_pred cccccccCCCCCHHHHHHHHHcCCC--CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC-----
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK----- 319 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~--~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~----- 319 (454)
..|+++|.+|||||||+|+|++... .+.+.+++|... +.+.+ ...+.++||||+........
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~---------~~~~~l~Dt~G~~~~~~~~~~~~~~ 95 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEV---------ADGKRLVDLPGYGYAEVPEEMKRKW 95 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEE---------ETTEEEEECCCCC------CCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEe---------cCCEEEEECcCCcccccCHHHHHHH
Confidence 4689999999999999999998762 235666777642 22222 12688999999854211000
Q ss_pred -cccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH---HHHHHHHHHhc
Q 012884 320 -GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKI 395 (454)
Q Consensus 320 -~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~---~~~l~~~l~~~ 395 (454)
.....++.+.+.++.+++|+|++.+....+.+ +..++.. .+.|.++|.||+|+....+. .+.+++.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 96 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ-MIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAF 169 (210)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhhhcccEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhc
Confidence 01112334446789999999998866554332 3344443 36899999999999875332 33444455443
Q ss_pred C----CceecccccccHHHHHHHHHhhc
Q 012884 396 G----CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 396 g----~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
. ..++++....+..+.++.+....
T Consensus 170 ~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 2 34678888889999888876544
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.40 E-value=6.2e-13 Score=146.30 Aligned_cols=126 Identities=21% Similarity=0.172 Sum_probs=86.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC------------ccC------CCceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD------------IAD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~------------Ia~------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
+.+|+++|.+|+|||||+|+|+..... +.+ .+++|+......+.+. +.++.|||
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--------~~~i~liD 81 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--------GHRVNIID 81 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--------TEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--------CeeEEEEE
Confidence 568999999999999999999843111 112 2355555555555443 24799999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHH
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL 385 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~ 385 (454)
|||+.+ +...+.++++.+|++|+|+|++.+...++...|.. +.. .++|+++|+||+|+... .+.+
T Consensus 82 TPG~~d-------f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~-----~~~p~ilviNK~Dl~~~~~~~~~ 148 (693)
T 2xex_A 82 TPGHVD-------FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT-----YGVPRIVFVNKMDKLGANFEYSV 148 (693)
T ss_dssp CCCCSS-------CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTTCCHHHHH
T ss_pred CcCCcc-------hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEECCCccccchHHHH
Confidence 999954 44556778888999999999999877777766654 443 37899999999999864 2234
Q ss_pred HHHHHHH
Q 012884 386 QSLTEEI 392 (454)
Q Consensus 386 ~~l~~~l 392 (454)
+++.+.+
T Consensus 149 ~~l~~~l 155 (693)
T 2xex_A 149 STLHDRL 155 (693)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.39 E-value=1.4e-12 Score=139.36 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=82.1
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCcc----------------C------CCceeeeccceeeeCCCCCCcccccccE
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIA----------------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEA 303 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia----------------~------~pfTT~~p~~g~v~~~~~~~~~~~~~~i 303 (454)
..+|+++|.+|||||||+++|+.....+. + ..+.|+......+.+. +..+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~~~i 84 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--------DCLV 84 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------TEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------CeEE
Confidence 46899999999999999999987532220 0 1122222222233322 2479
Q ss_pred EEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH-
Q 012884 304 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR- 382 (454)
Q Consensus 304 ~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~- 382 (454)
.||||||+.+ +.....++++.+|++|+|+|++.+...+.... ...+.. .+.|+++|+||+|+....
T Consensus 85 ~liDTPG~~d-------f~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~-~~~~~~-----~~ipiivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 85 NLLDTPGHED-------FSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKL-MEVTRL-----RDTPILTFMNKLDRDIRDP 151 (529)
T ss_dssp EEECCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHHHTT-----TTCCEEEEEECTTSCCSCH
T ss_pred EEEECCCChh-------HHHHHHHHHHHCCEEEEEEeCCccchHHHHHH-HHHHHH-----cCCCEEEEEcCcCCccccH
Confidence 9999999943 44456778899999999999998765444333 333432 478999999999997642
Q ss_pred -HHHHHHHHHH
Q 012884 383 -DRLQSLTEEI 392 (454)
Q Consensus 383 -e~~~~l~~~l 392 (454)
+.++++.+.+
T Consensus 152 ~~~~~~i~~~l 162 (529)
T 2h5e_A 152 MELLDEVENEL 162 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 3344555444
No 180
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.39 E-value=3.4e-13 Score=143.01 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=101.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchhh
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 326 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl 326 (454)
..|+++|.+|+|||||+++|.+.+......+++|.+.....+.++ +..++||||||+.+ +.....
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--------~~~i~~iDTPGhe~-------f~~~~~ 69 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--------NGMITFLDTPGHAA-------FTSMRA 69 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--------SSCCCEECCCTTTC-------CTTSBC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--------CEEEEEEECCCcHH-------HHHHHH
Confidence 578999999999999999998764333444566765544444332 24789999999843 333445
Q ss_pred cccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHHHHHHH--HH-Hh----cCC
Q 012884 327 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTE--EI-LK----IGC 397 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~~~l~~--~l-~~----~g~ 397 (454)
+.+..+|++++|+|++++...+..+.+.. +.. .+.|+++|+||+|+.... +..+++.+ .+ .. ..+
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~-~~~-----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQH-AKA-----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF 143 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHH-HHH-----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHH-HHh-----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE
Confidence 66788999999999998655555555533 332 478999999999997531 11111100 00 11 235
Q ss_pred ceecccccccHHHHHHHHHh
Q 012884 398 DKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 398 ~~~sa~~~~~~~e~~~~l~~ 417 (454)
.++++.+..++.+.++.+..
T Consensus 144 v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTT
T ss_pred EEEeeeeccCcchhhhhhhh
Confidence 56788889999998888764
No 181
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.39 E-value=4.1e-14 Score=143.34 Aligned_cols=167 Identities=20% Similarity=0.184 Sum_probs=89.3
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC-----c-cCCCc----------------------eeeecc-------------
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD-----I-ADYPF----------------------TTLMPN------------- 284 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~-----I-a~~pf----------------------TT~~p~------------- 284 (454)
+.+|++||.||||||||+|+|++.+.. + +..|. ||++..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 358999999999999999999987642 2 33444 332210
Q ss_pred --ceeeeCCCCCC-cccccccEEEecCCCCccccccC--C----cccchhhcccc-cccEEEEEEeCCCCCCHhhHHHHH
Q 012884 285 --LGRLDGDPTLG-AEKYSSEATLADLPGLIEGAHLG--K----GLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTVK 354 (454)
Q Consensus 285 --~g~v~~~~~~~-~~~~~~~i~liDTPGii~~a~~~--~----~lg~~fl~~i~-~advll~ViDas~~~~~~d~~~l~ 354 (454)
.+......... ......+++||||||+.+....+ . .+......+++ .++++|+|+|++......+...+.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 00000000000 00002479999999997643211 1 12222334443 456777788887644334433233
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCChHHH-HHHHHHHHHh--c---CCceecccccccHHHHHHHHHh
Q 012884 355 EELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--I---GCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 355 ~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~-~~~l~~~l~~--~---g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
+++. ..++|+++|+||+|+.+..+. .+.+...... . .+..+++....++.+.++.+..
T Consensus 191 ~~~~-----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEVD-----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHC-----TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHhC-----cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333 247899999999999864321 1111111111 1 2345666666665555555543
No 182
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.38 E-value=2.6e-14 Score=146.08 Aligned_cols=168 Identities=20% Similarity=0.173 Sum_probs=103.5
Q ss_pred eCCceeEEEecCCc--e-----ecc-----ccCcCc---ce--eeecCCCCCCCccccchhhhccccccccccccccccc
Q 012884 190 PVPLGTVVKHKRGK--L-----FSD-----LAHPGD---EV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDK 252 (454)
Q Consensus 190 ~vPvgtvv~~~~~~--~-----~~d-----l~~~g~---~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglV 252 (454)
++|+.+|+||.|-. . +.+ +.+.|- .+ +||+.|.|...+.+...... + -.+|+++
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~--------~-~~~i~~v 166 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR--------G-GKDVYVV 166 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH--------T-TSCEEEE
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc--------c-cceEEEe
Confidence 57999999998731 0 111 122332 22 78888877655433221100 0 1368999
Q ss_pred cCCCCCHHHHHHHHHcCC-------CCccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCcccchh
Q 012884 253 GLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 325 (454)
Q Consensus 253 G~pNaGKSTLlnaL~~~~-------~~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg~~f 325 (454)
|.||||||||+|+|++.. ..++++|+||++.....+. ..+.++||||+.........+....
T Consensus 167 G~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 167 GCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-----------EESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp EBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-----------SSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-----------CCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 999999999999999862 2358899999987665432 2589999999987654444455555
Q ss_pred hcc---cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH
Q 012884 326 LRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 383 (454)
Q Consensus 326 l~~---i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e 383 (454)
+.+ .++.+.+++++|+........+..+ +.+. ..+.|+++|+||+|.....+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~-d~l~-----~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLARF-DYVS-----GGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEEE-EEEE-----SSSEEEEEEECTTSCEEEEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEEE-EEec-----CCCceEEEEecCcccccccc
Confidence 544 4678999999998432111111110 1111 13689999999999986543
No 183
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.36 E-value=2.4e-12 Score=139.18 Aligned_cols=158 Identities=19% Similarity=0.116 Sum_probs=96.6
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCC-C-ceeeeccceeeeCC------CCC-Ccc---cccccEEEecCCCCccc
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADY-P-FTTLMPNLGRLDGD------PTL-GAE---KYSSEATLADLPGLIEG 314 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~-p-fTT~~p~~g~v~~~------~~~-~~~---~~~~~i~liDTPGii~~ 314 (454)
..|+++|.+|+|||||+++|++... .++ + +.|.+.....+..+ ... ... .....+.||||||+.+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4789999999999999999987532 111 1 22221111111100 000 000 00125999999998543
Q ss_pred cccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-------------
Q 012884 315 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------------- 381 (454)
Q Consensus 315 a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~------------- 381 (454)
.....+.++.||++|+|+|++++...+.++.|. .+.. .+.|+++|+||+|+...
T Consensus 84 -------~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~-----~~vPiIVViNKiDl~~~~~~~~~~~~~e~s 150 (594)
T 1g7s_A 84 -------TTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-----YRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (594)
T ss_dssp -------TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH-----TTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred -------HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH-----cCCeEEEEecccccccccccccCCchHHHH
Confidence 222335667899999999999977667666654 3443 37899999999999642
Q ss_pred ----H---H----HHHHHHHHHHhcC-----------------CceecccccccHHHHHHHHHhhc
Q 012884 382 ----R---D----RLQSLTEEILKIG-----------------CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 382 ----~---e----~~~~l~~~l~~~g-----------------~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
. + .+.++.+.+...+ +..+++.+..++.+.+..+....
T Consensus 151 a~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 0 1 1112233333322 34578888999999988877543
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.36 E-value=1.4e-12 Score=137.21 Aligned_cols=114 Identities=23% Similarity=0.164 Sum_probs=65.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-------------------------cC------CCceeeeccceeeeCCCCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-------------------------AD------YPFTTLMPNLGRLDGDPTL 294 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-------------------------a~------~pfTT~~p~~g~v~~~~~~ 294 (454)
..+|+++|.+|+|||||+++|+.....+ .+ ..++|++.....+..+
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~--- 119 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE--- 119 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS---
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC---
Confidence 4579999999999999999997532111 11 1344555444444432
Q ss_pred CcccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCC-------HhhHHHHHHHHHhcCCCCCCC
Q 012884 295 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYLER 367 (454)
Q Consensus 295 ~~~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~-------~~d~~~l~~eL~~~~~~~~~k 367 (454)
..++.||||||+.+ +...+...+..+|++|+|||++++.. .+..+.+ ..+.. .+.
T Consensus 120 -----~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~-----~~v 181 (467)
T 1r5b_A 120 -----HRRFSLLDAPGHKG-------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART-----QGI 181 (467)
T ss_dssp -----SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH-----TTC
T ss_pred -----CeEEEEEECCCcHH-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH-----cCC
Confidence 24799999999843 44456677788999999999987621 1222222 22322 367
Q ss_pred C-EEEEEeCCCCCC
Q 012884 368 P-FIVVLNKIDLPE 380 (454)
Q Consensus 368 p-~IvV~NK~Dl~~ 380 (454)
| +|+|+||+|+..
T Consensus 182 p~iivviNK~Dl~~ 195 (467)
T 1r5b_A 182 NHLVVVINKMDEPS 195 (467)
T ss_dssp SSEEEEEECTTSTT
T ss_pred CEEEEEEECccCCC
Confidence 7 999999999964
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.34 E-value=2.5e-12 Score=141.41 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=80.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC------c------cC------CCceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~------I------a~------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
+.+|+++|.+|+|||||+++|+..... + .+ ..++|+......+.+. ...+.|||
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--------~~~i~liD 83 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--------DHRINIID 83 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--------TEEEEEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--------CeEEEEEE
Confidence 568999999999999999999842111 1 11 2344544444444332 24799999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
|||+.+ +...+.++++.+|++|+|+|++.+...+....|.. +.. .+.|+++|+||+|+...
T Consensus 84 TPG~~d-------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~-----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 84 TPGHVD-------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK-----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCSSTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTTC
T ss_pred CcCccc-------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH-----cCCCEEEEEECCCcccC
Confidence 999944 44456778889999999999999887777766654 443 37999999999999864
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.31 E-value=6.6e-12 Score=143.11 Aligned_cols=153 Identities=18% Similarity=0.126 Sum_probs=95.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCC-----C-----c------cCCCceeeeccceeeeCCCCCCcccccccEEEecCC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKP-----D-----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 309 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~-----~-----I------a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTP 309 (454)
..+|+++|.+|+|||||+++|++... . . ....+.|++.....+... ...+.|||||
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------~~kI~IIDTP 367 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------TRHYAHVDCP 367 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------SCEEEEEECC
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------CEEEEEEECC
Confidence 45799999999999999999987410 0 0 012234444322223221 2479999999
Q ss_pred CCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCChHHHH---
Q 012884 310 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL--- 385 (454)
Q Consensus 310 Gii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~~~e~~--- 385 (454)
|+.+ +.......+..+|++|+|||++++...+..+.+ ..+.. .+.| +|||+||+|+.+.++..
T Consensus 368 GHed-------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-~ll~~-----lgIP~IIVVINKiDLv~d~e~le~i 434 (1289)
T 3avx_A 368 GHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLGRQ-----VGVPYIIVFLNKCDMVDDEELLELV 434 (1289)
T ss_dssp CHHH-------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-HHHHH-----HTCSCEEEEEECCTTCCCHHHHHHH
T ss_pred ChHH-------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-HHHHH-----cCCCeEEEEEeecccccchhhHHHH
Confidence 9854 334556678899999999999987655555544 34443 2678 78999999998643332
Q ss_pred -HHHHHHHHhcCC-------ceeccccc--------ccHHHHHHHHHhhc
Q 012884 386 -QSLTEEILKIGC-------DKVTSETE--------LSSEDAVKSLSTEG 419 (454)
Q Consensus 386 -~~l~~~l~~~g~-------~~~sa~~~--------~~~~e~~~~l~~~~ 419 (454)
+++.+.+...++ .++++.+. .++.+.++.+...+
T Consensus 435 ~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 435 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 344555555543 34555554 23566666665433
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.31 E-value=2.1e-12 Score=130.95 Aligned_cols=75 Identities=27% Similarity=0.279 Sum_probs=49.6
Q ss_pred cEEEecCCCCccccccC------CcccchhhcccccccEEEEEEeCCCCCCH-hhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 012884 302 EATLADLPGLIEGAHLG------KGLGRNFLRHLRRTRLLVHVIDAAAENPV-NDYRTVKEELRMYNPDYLERPFIVVLN 374 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~------~~lg~~fl~~i~~advll~ViDas~~~~~-~d~~~l~~eL~~~~~~~~~kp~IvV~N 374 (454)
.++||||||+.+....+ ..+...+..+++++|++++|+|++..+.. .+. ...+.... ..++|+|+|+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~---~~l~~~~~--~~~~~~i~V~n 211 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA---IKISREVD--PSGDRTFGVLT 211 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH---HHHHHHSC--TTCTTEEEEEE
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH---HHHHHHhc--ccCCCEEEEEe
Confidence 68999999998753211 11233456678899999999997654322 222 23334333 24689999999
Q ss_pred CCCCCCh
Q 012884 375 KIDLPEA 381 (454)
Q Consensus 375 K~Dl~~~ 381 (454)
|+|+.+.
T Consensus 212 K~Dl~~~ 218 (360)
T 3t34_A 212 KIDLMDK 218 (360)
T ss_dssp CGGGCCT
T ss_pred CCccCCC
Confidence 9999864
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=133.19 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=58.2
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++|+||||+... .....+.+|++++|+|++.+...+. +... ..+.|.++|+||+|+.+
T Consensus 167 ~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~~~~~~---i~~~-------il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGGDELQG---IKRG-------IIEMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcchhHHH---hHHH-------HHhcCCEEEEeeecCCC
Confidence 37899999998532 1223567999999999986532221 1111 23578899999999975
Q ss_pred hHH---HHHHHHHHHHhc---------CCceecccccccHHHHHHHHHhhc
Q 012884 381 ARD---RLQSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~~e---~~~~l~~~l~~~---------g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
... ....+...+... .+..+++.+..++.+.+..+....
T Consensus 227 ~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 227 IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 322 122333322211 123468888999999888877554
No 189
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.29 E-value=1.7e-12 Score=143.42 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=94.1
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCCC---------------------------------
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDP--------------------------------- 292 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~~--------------------------------- 292 (454)
+.+|++||.+|||||||+|+|++....-.....+|+.|..-.+...+
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 46899999999999999999999764221112334322111110000
Q ss_pred ---CCCc--------ccccccEEEecCCCCcccccc--C----Ccccchhhccc-ccccEEEEEEeCCCCCCHhhHHHHH
Q 012884 293 ---TLGA--------EKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRTVK 354 (454)
Q Consensus 293 ---~~~~--------~~~~~~i~liDTPGii~~a~~--~----~~lg~~fl~~i-~~advll~ViDas~~~~~~d~~~l~ 354 (454)
.... .....+++|+||||+...... . ..+......++ +.+|++|+|+|++.....++...+.
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 0000 000136899999999874311 1 11222222333 5799999999999866556653344
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHHHH-HHH--hc---CCceecccccccHHHHHHHHH
Q 012884 355 EELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EIL--KI---GCDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 355 ~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l~~-~l~--~~---g~~~~sa~~~~~~~e~~~~l~ 416 (454)
.++.. .++|+|+|+||+|+.+..+....+.+ .+. .. .+...++....++.+..+.+.
T Consensus 211 ~~L~~-----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 211 KEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp HHHCT-----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred HHHHh-----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 55542 47999999999999865332222221 010 01 234567766666555554444
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.28 E-value=1.3e-11 Score=135.96 Aligned_cols=133 Identities=17% Similarity=0.081 Sum_probs=85.5
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc------------cC------CCceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI------------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I------------a~------~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
+.+|+++|.+|+|||||+++|+.....+ .+ ..+.|+......+.+..... ..-...+.|||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~i~liD 88 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAK-QYEPHRINIID 88 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccc-cCCceeEEEEe
Confidence 5789999999999999999997532111 11 12334433333333321000 00014799999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH--HHH
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRL 385 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~--e~~ 385 (454)
|||+.+ +.....+.++.||++|+|+|++.+...+....|.. +.. .+.|+++|+||+|+.... +.+
T Consensus 89 TPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~-----~~ip~ilviNKiD~~~~~~~~~~ 155 (704)
T 2rdo_7 89 TPGHVD-------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK-----YKVPRIAFVNKMDRMGANFLKVV 155 (704)
T ss_pred CCCccc-------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEeCCCcccccHHHHH
Confidence 999954 33456677888999999999998766665555543 332 378999999999997642 334
Q ss_pred HHHHHHH
Q 012884 386 QSLTEEI 392 (454)
Q Consensus 386 ~~l~~~l 392 (454)
+++.+.+
T Consensus 156 ~~l~~~l 162 (704)
T 2rdo_7 156 NQIKTRL 162 (704)
T ss_pred HHHHHHh
Confidence 4444444
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.27 E-value=3.2e-12 Score=143.48 Aligned_cols=119 Identities=23% Similarity=0.194 Sum_probs=81.6
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc-cCCC---------------ceeeeccceeeeCCC----------CCCcccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI-ADYP---------------FTTLMPNLGRLDGDP----------TLGAEKY 299 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I-a~~p---------------fTT~~p~~g~v~~~~----------~~~~~~~ 299 (454)
+.+|+++|.+|+|||||+++|+.....+ ...+ +.|+......+.+.. .... -
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~--~ 96 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG--N 96 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS--S
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC--C
Confidence 5689999999999999999998753222 1111 223322222222210 0000 0
Q ss_pred cccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 300 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 300 ~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
...+.||||||+.+ +...+.++++.+|++|+|+|++++...+....|...+. .+.|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCS-------SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchh-------hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCeEEEEECCCcc
Confidence 24789999999954 44456778889999999999999888888776665443 368999999999987
No 192
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=5.7e-12 Score=128.30 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=70.0
Q ss_pred cccccccCCCCCHHHHHHHHHcCCCCccCCC-------ceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccC-
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 318 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~~~Ia~~p-------fTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~- 318 (454)
.+|++||.+|+|||||+|+|.+.......+. .+|.......+.... . .....+++|||||+.+.....
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~--~--~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE--R--GVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC--------CEEEEEEEEC------------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec--C--CcccceEEEEeccccccCccHH
Confidence 4679999999999999999987654433221 122211111111110 0 011368999999994322110
Q ss_pred --Ccccc-------hhhcc--------c--ccccEEEEEEeCC-CCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 319 --KGLGR-------NFLRH--------L--RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 319 --~~lg~-------~fl~~--------i--~~advll~ViDas-~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..+.. .+++. + .+++++||+||.+ ......+.. +...+. ...|+|+|+||+|+
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~-~~~~l~------~~~piIlV~NK~Dl 186 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA-FMKAIH------NKVNIVPVIAKADT 186 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHH-HHHHTC------S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHH-HHHHhc------cCCCEEEEEECCCC
Confidence 11211 12221 1 1345788888863 333233322 222332 46899999999999
Q ss_pred CChHHHH---HHHHHHHHhcC--CceecccccccHHHHHHHHHh
Q 012884 379 PEARDRL---QSLTEEILKIG--CDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 379 ~~~~e~~---~~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~~ 417 (454)
....+.. +++.+.+...+ +.++++....+ .+.+..+..
T Consensus 187 ~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 187 LTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp SCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence 8765432 23334443333 44556655554 444444443
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.22 E-value=1.8e-11 Score=124.03 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=66.1
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
..++|+||||+... ....++.+|++|+|+|++..+..+.+. ....++|.++|+||+|+..
T Consensus 172 ~~~iiiDTpGi~~~----------~~~~~~~aD~vl~V~d~~~~~~~~~l~----------~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 172 FDVILIETVGVGQS----------EVAVANMVDTFVLLTLARTGDQLQGIK----------KGVLELADIVVVNKADGEH 231 (355)
T ss_dssp CCEEEEEECSCSSH----------HHHHHTTCSEEEEEEESSTTCTTTTCC----------TTSGGGCSEEEEECCCGGG
T ss_pred CCEEEEeCCCCCcH----------HHHHHHhCCEEEEEECCCCCccHHHHH----------HhHhhcCCEEEEECCCCcC
Confidence 47999999997432 223357899999999987654332211 1234579999999999975
Q ss_pred hHHH---HHHHHHHHHhc---------CCceecccccccHHHHHHHHHhhc
Q 012884 381 ARDR---LQSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~~e~---~~~l~~~l~~~---------g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+. .+++.+.+..+ .+..+++.+..++.+.+..+....
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 232 HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4322 23333333222 245678889999999998887655
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.20 E-value=5.8e-11 Score=127.34 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=89.0
Q ss_pred cccccccccCCCCCHHHHHHHHHcCCCC----------------ccCC------CceeeeccceeeeCCCCCCccccccc
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAKPD----------------IADY------PFTTLMPNLGRLDGDPTLGAEKYSSE 302 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~~~----------------Ia~~------pfTT~~p~~g~v~~~~~~~~~~~~~~ 302 (454)
.++.|||||...+|||||..+|+-..-. +.|+ -+.|+......+.+. +..
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~--------~~~ 101 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR--------DRV 101 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--------TEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--------CEE
Confidence 3678999999999999999999632211 1111 133333333444433 348
Q ss_pred EEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh-
Q 012884 303 ATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA- 381 (454)
Q Consensus 303 i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~- 381 (454)
|.|+||||+.+ |.....+.++-||.+|+|||+..+...+....|.. +.. .+.|.++++||+|...+
T Consensus 102 iNlIDTPGHvD-------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~-----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 102 VNLLDTPGHQD-------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM-----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp EEEECCCCGGG-------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSCCCC
T ss_pred EEEEeCCCcHH-------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH-----hCCceEEEEecccchhcc
Confidence 99999999955 55677888999999999999999887776666644 444 37999999999999765
Q ss_pred -HHHHHHHHHHHH
Q 012884 382 -RDRLQSLTEEIL 393 (454)
Q Consensus 382 -~e~~~~l~~~l~ 393 (454)
.+.++++++.+.
T Consensus 169 ~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 169 PLDVMADIEQHLQ 181 (548)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhHhhhhhhhhcC
Confidence 344555555553
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.17 E-value=9.5e-11 Score=128.36 Aligned_cols=113 Identities=24% Similarity=0.217 Sum_probs=77.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc------------cCC------CceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI------------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I------------a~~------pfTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
...|+++|.+|+|||||+++|++....+ .++ .+.|.......+... ...+.|||
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------~~~~nliD 80 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVFLLD 80 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEEEEE
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--------CEEEEEEe
Confidence 4678999999999999999998543221 111 112222222222221 23789999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
|||+.+ +.....+.++.+|++++|+|++.+...+..+.+ ..+.. .+.|+++|+||+|+.
T Consensus 81 TpG~~~-------f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~-~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGD-------FVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGG-------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCEEEEEECGGGC
T ss_pred CCCccc-------hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHH-HHHHH-----ccCCEEEEecCCchh
Confidence 999854 334567778889999999999887655555444 44443 379999999999997
No 196
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.11 E-value=6e-11 Score=129.37 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=86.0
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCc---c---------CCC------ceeeeccceeeeCCCCCCcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDI---A---------DYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~I---a---------~~p------fTT~~p~~g~v~~~~~~~~~~~~~~i~liD 307 (454)
|++||++|...+|||||..+|+...-.| + |+- +.|+......+.+. +..|.|+|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------~~~iNlID 73 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------NTKVNIID 73 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--------SCBCCCEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--------CEEEEEEE
Confidence 5789999999999999999995321111 1 110 22222222223322 34799999
Q ss_pred CCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHHH
Q 012884 308 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRL 385 (454)
Q Consensus 308 TPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~~ 385 (454)
|||+.+ |.....+.++-||.+|+|||+..+...+....|+. +..+ +.|.|+++||+|.... ...+
T Consensus 74 TPGH~D-------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~-----~lp~i~~INKmDr~~a~~~~~~ 140 (638)
T 3j25_A 74 TPGHMD-------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM-----GIPTIFFINKIDQNGIDLSTVY 140 (638)
T ss_dssp CCCSSS-------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH-----TCSCEECCEECCSSSCCSHHHH
T ss_pred CCCcHH-------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc-----CCCeEEEEeccccccCCHHHHH
Confidence 999954 55667888999999999999999876666555554 4443 6899999999998764 2334
Q ss_pred HHHHHHH
Q 012884 386 QSLTEEI 392 (454)
Q Consensus 386 ~~l~~~l 392 (454)
+++++.+
T Consensus 141 ~~i~~~l 147 (638)
T 3j25_A 141 QDIKEKL 147 (638)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 4444433
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.09 E-value=1e-10 Score=117.99 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=84.3
Q ss_pred cccccccCCCCCHHHHHHHHHcC------CCCc-cCCCceeeec--cce--------------eeeCCC---CCCc----
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHA------KPDI-ADYPFTTLMP--NLG--------------RLDGDP---TLGA---- 296 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~------~~~I-a~~pfTT~~p--~~g--------------~v~~~~---~~~~---- 296 (454)
..|+++|.||||||||+|.|++. +..+ +..+++|... ..+ .+.... ....
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~~ 136 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQR 136 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHHH
Confidence 45799999999999999999642 2222 3344444310 000 000000 0000
Q ss_pred --------ccccccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC
Q 012884 297 --------EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 368 (454)
Q Consensus 297 --------~~~~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp 368 (454)
...+.+++|+||||+.+... ..++.+|++|+|+|++.++..+.++ ... .++|
T Consensus 137 ~~~~~~~~~~~~~~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~~~~l~---~~~-------~~~p 196 (341)
T 2p67_A 137 ARELMLLCEAAGYDVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDDLQGIK---KGL-------MEVA 196 (341)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECCTTHHH----------HHHTTCSEEEEEECC------CCCC---HHH-------HHHC
T ss_pred HHHHHHHhhccCCCEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHHHHHHH---Hhh-------hccc
Confidence 00124799999999864311 1247899999999997653222111 111 1468
Q ss_pred EEEEEeCCCCCChHHH---HHHHHHHHHhcC---------CceecccccccHHHHHHHHHhhc
Q 012884 369 FIVVLNKIDLPEARDR---LQSLTEEILKIG---------CDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 369 ~IvV~NK~Dl~~~~e~---~~~l~~~l~~~g---------~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
.++|+||+|+....+. .+++.+.+..+. +..+++.+..++.+.+..+....
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 8999999999875322 223444333322 23567778899999888776543
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.06 E-value=2.9e-10 Score=108.74 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=68.8
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHH-HHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKE-ELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~-eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.++|+||||+.+..... .++..+..++.. +++|+|+|++......++..... .+.... ..++|+++|+||+|+..
T Consensus 110 d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp SEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 79999999997643221 123344456677 99999999876544444332211 111000 12689999999999986
Q ss_pred hHHHHHHHHH----------H------------------HHh----cCCceecccccccHHHHHHHHHhhc
Q 012884 381 ARDRLQSLTE----------E------------------ILK----IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~~e~~~~l~~----------~------------------l~~----~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+ .+++.+ . +.. ..+.++++....++.+.++.+....
T Consensus 186 ~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 186 EEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 532 111111 1 122 1456778888899999888876543
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.02 E-value=2.9e-10 Score=105.86 Aligned_cols=154 Identities=11% Similarity=0.016 Sum_probs=88.7
Q ss_pred ccccccccCCCCCHHHHHHHHHcCC-----CC-ccCCCceeeecc------ceeeeCCCC--CCc----------ccccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAK-----PD-IADYPFTTLMPN------LGRLDGDPT--LGA----------EKYSS 301 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~-----~~-Ia~~pfTT~~p~------~g~v~~~~~--~~~----------~~~~~ 301 (454)
+..|+++|++|||||||+++|+... .. +...+++|.+.. ...+..+.. ..- .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 4578999999999999999998652 11 122333332211 000111100 000 01123
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.+.++||+|+.... . ... ...+.+++|+|++.... ... ..+.. .+.|.++|+||+|+.+.
T Consensus 110 d~iiidt~G~~~~~----~----~~~--~~~~~~i~vvd~~~~~~--~~~---~~~~~-----~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 110 DLLLIENVGNLICP----V----DFD--LGENYRVVMVSVTEGDD--VVE---KHPEI-----FRVADLIVINKVALAEA 169 (221)
T ss_dssp SEEEEEEEEBSSGG----G----GCC--CSCSEEEEEEEGGGCTT--HHH---HCHHH-----HHTCSEEEEECGGGHHH
T ss_pred CEEEEeCCCCCCCC----c----hhc--cccCcEEEEEeCCCcch--hhh---hhhhh-----hhcCCEEEEecccCCcc
Confidence 78999999962110 0 000 13578999999987532 111 11221 25889999999998643
Q ss_pred H-HHHHHHHHHHHhc----CCceecccccccHHHHHHHHHhhc
Q 012884 382 R-DRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 382 ~-e~~~~l~~~l~~~----g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
. ...+++.+.+... .+..+++.+..++.+.+..+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 170 VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 2 1234444444432 345678889999999999887554
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.00 E-value=1.3e-09 Score=120.23 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=87.3
Q ss_pred cccccccccCCCCCHHHHHHHHHcCC------CCc------cCC------CceeeeccceeeeCCCCCCcccccccEEEe
Q 012884 245 IMRDDTDKGLPNAGKSTLLAAITHAK------PDI------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLA 306 (454)
Q Consensus 245 ~~adVglVG~pNaGKSTLlnaL~~~~------~~I------a~~------pfTT~~p~~g~v~~~~~~~~~~~~~~i~li 306 (454)
.++.||+||...+|||||..+|+... ..+ .|+ -+.|+....-.+.+...... .-+..|.|+
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~-~~~~~iNlI 90 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQ-YDNYRVNVI 90 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSC-SCCEEEEEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCC-CCCEEEEEE
Confidence 47899999999999999999995321 011 110 12233222223332211000 002379999
Q ss_pred cCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh--HHH
Q 012884 307 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDR 384 (454)
Q Consensus 307 DTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~--~e~ 384 (454)
||||+.+ |.....+.++-||.+|+|||+..+...+....|++.++ .+.|.++|+||+|.... ...
T Consensus 91 DTPGHvD-------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~a~~~~~ 157 (709)
T 4fn5_A 91 DTPGHVD-------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK------YGVPRIVYVNKMDRQGANFLRV 157 (709)
T ss_dssp CCCSCTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH------HTCCEEEEEECSSSTTCCHHHH
T ss_pred eCCCCcc-------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEccccccCccHHHH
Confidence 9999955 55667788899999999999999987777777766555 37999999999998764 234
Q ss_pred HHHHHHHH
Q 012884 385 LQSLTEEI 392 (454)
Q Consensus 385 ~~~l~~~l 392 (454)
++++.+.+
T Consensus 158 ~~ei~~~l 165 (709)
T 4fn5_A 158 VEQIKKRL 165 (709)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhhc
Confidence 45555444
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=1.4e-10 Score=116.91 Aligned_cols=99 Identities=10% Similarity=0.127 Sum_probs=57.2
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.+++|+||||+.+.. ....+.+|++++|+|++.++. .+.+...+ .+.+.++|+||+|+..
T Consensus 148 ~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~---~~~i~~~i-------~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 148 FDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDE---LQGIKKGI-------FELADMIAVNKADDGD 207 (337)
T ss_dssp CCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCTTH-------HHHCSEEEEECCSTTC
T ss_pred CCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCccc---HHHHHHHH-------hccccEEEEEchhccC
Confidence 479999999996431 122467999999999865421 11111111 1346688889999765
Q ss_pred hHHHH----HHHHHHHHhc---------CCceecccccccHHHHHHHHHhhc
Q 012884 381 ARDRL----QSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 381 ~~e~~----~~l~~~l~~~---------g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
..+.. +++...+... .+..+++....++.+.++.+....
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33322 2222222111 123467788888888877776543
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=3.9e-09 Score=109.60 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=71.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCC-------ceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC-
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK- 319 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~p-------fTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~- 319 (454)
+|++||.+|||||||+|+|.+.......+. .|+.....+.+... ......+++|||||+........
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-----~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-----GGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----------CEEEEEEECC-----------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-----CCcccceeeeechhhhhhccchhh
Confidence 569999999999999999998764322121 11111111111000 01113689999999965321000
Q ss_pred --cc--------cch------h-hcccc--cccEEEEEEeCC-CCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 320 --GL--------GRN------F-LRHLR--RTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 320 --~l--------g~~------f-l~~i~--~advll~ViDas-~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.+ ... . ...+. +++++||+++.+ ......+... ...|. .+.|+|+|+||+|+.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~-lk~L~------~~v~iIlVinK~Dll 180 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF-MKRLH------EKVNIIPLIAKADTL 180 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHH-HHHHT------TTSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHH-HHHHh------ccCcEEEEEEcccCc
Confidence 00 000 0 11223 355677777765 3444444433 34443 268999999999998
Q ss_pred ChHHHH---HHHHHHHHhcC--CceecccccccHHHHHHHHH
Q 012884 380 EARDRL---QSLTEEILKIG--CDKVTSETELSSEDAVKSLS 416 (454)
Q Consensus 380 ~~~e~~---~~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~ 416 (454)
...+.. +.+.+.+...+ +..+++.+..+..+.+..+.
T Consensus 181 ~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 181 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCCCC---------------
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHH
Confidence 754432 34445555444 45556655555555554444
No 203
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=4.4e-10 Score=110.68 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=64.4
Q ss_pred eCCceeEEEecCCc------eecccc-CcCcce--eeecCCCCCCCccccchhhhc------cccccccccccccccccC
Q 012884 190 PVPLGTVVKHKRGK------LFSDLA-HPGDEV--LVARGGRGGISLLEVPENRRK------RMTTLTTNIMRDDTDKGL 254 (454)
Q Consensus 190 ~vPvgtvv~~~~~~------~~~dl~-~~g~~~--i~A~gG~Gg~~~~~~~~~~~~------~~~~l~~k~~adVglVG~ 254 (454)
.+|+.+++||.|-. .+.+++ +.|-++ ++|+.|.|...+.+....... +..... +.-.+|++||.
T Consensus 50 ~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~-~~~~~v~~vG~ 128 (282)
T 1puj_A 50 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVK-PRAIRALIIGI 128 (282)
T ss_dssp SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCC-CCCEEEEEEES
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEec
Confidence 57999999998742 223443 335343 788988876654432111000 000000 11236899999
Q ss_pred CCCCHHHHHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcccc
Q 012884 255 PNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 315 (454)
Q Consensus 255 pNaGKSTLlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a 315 (454)
||||||||+|+|++.+. .+++.|+||++...-.+ +..+.++||||+....
T Consensus 129 ~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 129 PNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPK 179 (282)
T ss_dssp TTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSC
T ss_pred CCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-----------CCCEEEEECcCcCCCC
Confidence 99999999999999874 56899999998753322 2379999999997653
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.89 E-value=1.5e-09 Score=107.64 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=73.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccC-CCc------eeee-ccceeeeCCCCCCcccccccEEEecCCCCcccccc--
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIAD-YPF------TTLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-- 317 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~-~pf------TT~~-p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~-- 317 (454)
+|++||.+|||||||+|+|.+....... .++ .|.. ...+.+.... .....+++|||||+......
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~-----~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER-----GVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--------CCEEEEEEEEC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC-----CcccCcchhhhhhhhhhcCcHH
Confidence 6699999999999999999875322211 110 1111 1111111000 11237899999999321100
Q ss_pred -CCcccc-------hhhc----------ccccccEEEEEEeCCC-CCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 318 -GKGLGR-------NFLR----------HLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 318 -~~~lg~-------~fl~----------~i~~advll~ViDas~-~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
-..+.. .+++ ++.+++++|++++.+. .....+.+ .+.... ...++++|+||+|+
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~----~l~~l~---~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA----FMKAIH---NKVNIVPVIAKADT 167 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH----HHHHHT---TTSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH----HHHHHH---hcCCEEEEEEeCCC
Confidence 011111 1111 1234556777777543 23333332 233322 25799999999999
Q ss_pred CChHHH---HHHHHHHHHhcC--CceecccccccHHHHHHHHHhhcC
Q 012884 379 PEARDR---LQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 379 ~~~~e~---~~~l~~~l~~~g--~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
...++. .+++.+.+...+ +.++++... ++.+.+..++..+.
T Consensus 168 ~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 168 LTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 875442 234445555544 556787777 88888877776553
No 205
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.66 E-value=1e-08 Score=110.58 Aligned_cols=103 Identities=19% Similarity=0.073 Sum_probs=65.1
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCCccCCCceeeeccceeeeCC-CCCCcccccccEEEecCCCCccccccCCcc-cc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAHLGKGL-GR 323 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~Ia~~pfTT~~p~~g~v~~~-~~~~~~~~~~~i~liDTPGii~~a~~~~~l-g~ 323 (454)
...|+++|.||||||||||+|++.+..+ ++++||.+.+.+.+.+. +.. ...+..+.|+||||+.........- ..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~--~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHP--KKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECS--SSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccc--cCCCceEEEecCCCcCcccccchhHHHH
Confidence 3578999999999999999999987655 77888877777765320 000 0012479999999998654311111 11
Q ss_pred hh-hcccccccEEEEEEeCCCCCCHhhHHHHH
Q 012884 324 NF-LRHLRRTRLLVHVIDAAAENPVNDYRTVK 354 (454)
Q Consensus 324 ~f-l~~i~~advll~ViDas~~~~~~d~~~l~ 354 (454)
.| +..+. ++ ++|+|+......+++..+.
T Consensus 115 ~fala~ll-ss--~lv~n~~~~i~~~dl~~l~ 143 (592)
T 1f5n_A 115 IFALAVLL-SS--TFVYNSIGTINQQAMDQLY 143 (592)
T ss_dssp HHHHHHHH-CS--EEEEEEESCSSHHHHHTTH
T ss_pred HHHHHHHh-cC--eEEEECCCCccHHHHHHHH
Confidence 11 22222 33 5677777766677776543
No 206
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.66 E-value=3.8e-09 Score=102.93 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=61.4
Q ss_pred eCCceeEEEecCCc------eecccc-CcCcc-eeeecCCCCCCCccccchhhhccccccccccccccccccCCCCCHHH
Q 012884 190 PVPLGTVVKHKRGK------LFSDLA-HPGDE-VLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAGKST 261 (454)
Q Consensus 190 ~vPvgtvv~~~~~~------~~~dl~-~~g~~-~i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaGKST 261 (454)
.+|..+++||.|-. .+.+++ +.|.+ .++|+.|.|...+.+. +. +.+.+|++||.||+||||
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v~iSa~~~~gi~~L~~~----------l~-~~~~~v~~vG~~~vGKSs 114 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKL----------SF-DRLARVLIVGVPNTGKST 114 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH----------CC-CTTCEEEEEESTTSSHHH
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeEEEECCCCcCHHHHHHH----------HH-HhhhheEEeCCCCCCHHH
Confidence 88999999998731 112222 23322 5777777654322211 11 001478999999999999
Q ss_pred HHHHHHcCCC-CccCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccc
Q 012884 262 LLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 314 (454)
Q Consensus 262 LlnaL~~~~~-~Ia~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~ 314 (454)
|+|+|.+... .+++.|++|.......+ ...+.++||||+...
T Consensus 115 lin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 115 IINKLKGKRASSVGAQPGITKGIQWFSL-----------ENGVKILDTPGILYK 157 (262)
T ss_dssp HHHHHHTTCC----------CCSCEEEC-----------TTSCEEESSCEECCC
T ss_pred HHHHHhcccccccCCCCCCccceEEEEe-----------CCCEEEEECCCcccC
Confidence 9999998876 45888999986543221 237899999999764
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.61 E-value=1.6e-07 Score=91.67 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=78.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc-c-------CCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI-A-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 319 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I-a-------~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~ 319 (454)
.+++||.+|||||||+|.|.+..... + +.+.++.....+.+.-+. .+...++++|+||+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~-----~~~~~ltv~d~~~~g~~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG-----GVKMKLTVIDTPGFGDQINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC---------CCEEEEECCCC--CCSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC-----CCcCCceEEechhhhhhcccHH
Confidence 47899999999999999998864321 1 122222222223222111 1123789999999854322111
Q ss_pred c---cc----chhh--------------cccccccEEEEEEeCC-CCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 320 G---LG----RNFL--------------RHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 320 ~---lg----~~fl--------------~~i~~advll~ViDas-~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
. +. ..+. -.+.++.+.++++|.. .+....+.+.+. .|.. .+++|+|+||+|
T Consensus 79 ~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~-~L~~------~~~vI~Vi~K~D 151 (270)
T 3sop_A 79 CWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMK-HLSK------VVNIIPVIAKAD 151 (270)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHH-HHHT------TSEEEEEETTGG
T ss_pred HHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHH-HHHh------cCcEEEEEeccc
Confidence 0 00 0111 1245678999999965 566666766553 4542 389999999999
Q ss_pred CCChHHH---HHHHHHHHHhcCCc
Q 012884 378 LPEARDR---LQSLTEEILKIGCD 398 (454)
Q Consensus 378 l~~~~e~---~~~l~~~l~~~g~~ 398 (454)
.....+. .+.+++.+...++.
T Consensus 152 ~lt~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 152 TMTLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcc
Confidence 9876442 23344555555543
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.60 E-value=5.3e-08 Score=90.72 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=83.2
Q ss_pred ccccccccCCCCCHHHHHHHHHcCCCC------ccCCCceeeecc------ceeeeCC-CCC---Cc----------ccc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHAKPD------IADYPFTTLMPN------LGRLDGD-PTL---GA----------EKY 299 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~~~~------Ia~~pfTT~~p~------~g~v~~~-~~~---~~----------~~~ 299 (454)
..+|+++|.+|||||||+++|+..... +...+.++.+.. ...+..+ ... .. ...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 117 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD 117 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence 457899999999999999999865211 111111111000 0111110 000 00 000
Q ss_pred cccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 300 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 300 ~~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
...+.++|++|.+... . .| . ...+.++.|+|+......... . ... .++|.++|+||+|+.
T Consensus 118 ~~d~~~id~~g~i~~~---~----s~-~--~~~~~~~~v~~~~~~~~~~~~-~----~~~-----~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP---A----DF-D--LGTHKRIVVISTTEGDDTIEK-H----PGI-----MKTADLIVINKIDLA 177 (226)
T ss_dssp GCSEEEEECCSCSSGG---G----GC-C--CSCSEEEEEEEGGGCTTTTTT-C----HHH-----HTTCSEEEEECGGGH
T ss_pred CCCEEEEeCCCCccCc---c----hh-h--hccCcEEEEEecCcchhhHhh-h----hhH-----hhcCCEEEEeccccC
Confidence 1268999999964321 0 11 1 124566788886432211110 0 111 158899999999987
Q ss_pred ChHH-HHHHHHHHHHh----cCCceecccccccHHHHHHHHHhh
Q 012884 380 EARD-RLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTE 418 (454)
Q Consensus 380 ~~~e-~~~~l~~~l~~----~g~~~~sa~~~~~~~e~~~~l~~~ 418 (454)
+..+ ..+++.+.+.. ..+.++++.+..++.+.+..+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 178 DAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp HHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 5321 23444444443 245678889999999999888654
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.53 E-value=1.5e-07 Score=97.74 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=68.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC---CccC-CCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCC----
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP---DIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK---- 319 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~---~Ia~-~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~---- 319 (454)
.+++||.+|||||||||.|.+... .+.. .+.+++. ..+.+.-.. .+...++++|++|+........
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~-----~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQES-----NVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC-------CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecC-----ccccccchhhhhhhhhccccchhhhH
Confidence 489999999999999999998742 1211 2334443 222222111 0113689999999854311000
Q ss_pred ---cccch---hh----------ccccccc---EEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 320 ---GLGRN---FL----------RHLRRTR---LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 320 ---~lg~~---fl----------~~i~~ad---vll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.+... ++ ..+..++ +++||+|+..+....|++++. .|. .+.|+|+|+||+|...
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk-~L~------~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMK-KLD------SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHH-HTC------SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHH-HHh------hCCCEEEEEcchhccc
Confidence 00011 11 1223333 477788887776677765543 333 3789999999999987
Q ss_pred hHH
Q 012884 381 ARD 383 (454)
Q Consensus 381 ~~e 383 (454)
..+
T Consensus 191 ~~E 193 (427)
T 2qag_B 191 KSE 193 (427)
T ss_dssp HHH
T ss_pred hHH
Confidence 644
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.45 E-value=1.6e-07 Score=99.51 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=66.5
Q ss_pred cccccccCCCCCHHHHHHHHH------cCCCCc-cCCCceee----------eccceeeeCCCCCCc-----------cc
Q 012884 247 RDDTDKGLPNAGKSTLLAAIT------HAKPDI-ADYPFTTL----------MPNLGRLDGDPTLGA-----------EK 298 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~------~~~~~I-a~~pfTT~----------~p~~g~v~~~~~~~~-----------~~ 298 (454)
..|+++|.|||||||+++.|. +.++.+ +.-++... ...+..+.......+ ..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~ 181 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999998 554433 21111100 000111110000000 00
Q ss_pred ccccEEEecCCCCccccccCCcccch---hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCE-EEEEe
Q 012884 299 YSSEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN 374 (454)
Q Consensus 299 ~~~~i~liDTPGii~~a~~~~~lg~~---fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~-IvV~N 374 (454)
.+..++|+||||..... ..+... +.+. -.+|.+++|+|++.+. +.+..+ ..+.. ..|+ ++|+|
T Consensus 182 ~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~-i~pd~vllVvDa~~g~--~~~~~a-~~~~~------~~~i~gvVlN 248 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQE---DSLFEEMLQVANA-IQPDNIVYVMDASIGQ--ACEAQA-KAFKD------KVDVASVIVT 248 (504)
T ss_dssp TTCCEEEEEECCCCTTC---HHHHHHHHHHHHH-HCCSEEEEEEETTCCT--THHHHH-HHHHH------HHCCCCEEEE
T ss_pred CCCcEEEEeCCCCcccc---hhHHHHHHHHHhh-hcCceEEEEEeccccc--cHHHHH-HHHHh------hcCceEEEEe
Confidence 12479999999986421 111111 1122 2689999999998764 233332 22221 2564 89999
Q ss_pred CCCCCCh
Q 012884 375 KIDLPEA 381 (454)
Q Consensus 375 K~Dl~~~ 381 (454)
|+|....
T Consensus 249 K~D~~~~ 255 (504)
T 2j37_W 249 KLDGHAK 255 (504)
T ss_dssp CTTSCCC
T ss_pred CCccccc
Confidence 9998754
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=1.9e-06 Score=85.08 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=72.0
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
++++||| +.+ +..-...+++.+|++|+|+|++++. +.+.+..|..+++. .++|+++|+||+||.+
T Consensus 64 ~~~iwD~--qer-------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHR-------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCC-------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccc-------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 6899999 322 2222335678899999999999876 56666666666654 3699999999999987
Q ss_pred hHHH--HHHHHHHHHh-cCCceecccccccHHHHHHHHHh
Q 012884 381 ARDR--LQSLTEEILK-IGCDKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 381 ~~e~--~~~l~~~l~~-~g~~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+. .+++.+.+.. ..+.++++.+..++.+.+..+..
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 5432 2333333332 45678899999999999987654
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.27 E-value=4.8e-06 Score=86.21 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=82.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC----Cc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP----DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 322 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~----~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~lg 322 (454)
-||++|.+|||||||+|.|.+... .| .+-.-+|.. +.+.... ....++++|+||+... +...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~------~~~~ltv~D~~g~~~~----~~~~ 137 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHP------NIPNVVFWDLPGIGST----NFPP 137 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECS------SCTTEEEEECCCGGGS----SCCH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEecccc------ccCCeeehHhhcccch----HHHH
Confidence 579999999999999999998532 22 111112221 2221111 1136899999998532 1111
Q ss_pred chhhc--ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC------------ChHHHHHHH
Q 012884 323 RNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP------------EARDRLQSL 388 (454)
Q Consensus 323 ~~fl~--~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~------------~~~e~~~~l 388 (454)
..++. .+...+..++ ++... ...+++.++ ..+.. .++|+++|+||.|+. ...+..+.+
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la-~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATR-FKKNDIDIA-KAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHH-HHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHH-HHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 22222 2334455555 77653 234455444 44443 368999999999875 222333333
Q ss_pred HHHH----HhcCC-----ceecccc--cccHHHHHHHHHhhcCc
Q 012884 389 TEEI----LKIGC-----DKVTSET--ELSSEDAVKSLSTEGGE 421 (454)
Q Consensus 389 ~~~l----~~~g~-----~~~sa~~--~~~~~e~~~~l~~~~~~ 421 (454)
.+.. .+.+. ...+++. +.++++....+...+..
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 3332 23321 2235533 33477777777766644
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.21 E-value=1.5e-06 Score=90.49 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=65.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC------CCCc-cCCCc------------------------eeeeccce---eeeCCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA------KPDI-ADYPF------------------------TTLMPNLG---RLDGDPT 293 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~------~~~I-a~~pf------------------------TT~~p~~g---~v~~~~~ 293 (454)
.|+++|.+||||||+++.|... +..+ +.-++ +|.+|..- .+..-
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~-- 178 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF-- 178 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh--
Confidence 5789999999999999999763 2221 11111 22232100 00000
Q ss_pred CCcccccccEEEecCCCCccccccCCcccch--hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCC-C-E
Q 012884 294 LGAEKYSSEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-P-F 369 (454)
Q Consensus 294 ~~~~~~~~~i~liDTPGii~~a~~~~~lg~~--fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~k-p-~ 369 (454)
....++|+||||..... ..+... .+..+..+|.+++|+|+..+. +.+.. +..++ ... | .
T Consensus 179 -----~~~D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~----~~~~~---~~~~~i~ 241 (432)
T 2v3c_C 179 -----KKADVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQ----AKAFK---EAVGEIG 241 (432)
T ss_dssp -----SSCSEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHH----HHHHH---TTSCSCE
T ss_pred -----hCCCEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHH----HHHHh---hcccCCe
Confidence 12379999999986421 111111 123344689999999997652 22222 23332 134 5 8
Q ss_pred EEEEeCCCCCCh
Q 012884 370 IVVLNKIDLPEA 381 (454)
Q Consensus 370 IvV~NK~Dl~~~ 381 (454)
.+|+||+|....
T Consensus 242 gvVlnK~D~~~~ 253 (432)
T 2v3c_C 242 SIIVTKLDGSAK 253 (432)
T ss_dssp EEEEECSSSCST
T ss_pred EEEEeCCCCccc
Confidence 899999998643
No 214
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.19 E-value=6.5e-07 Score=90.86 Aligned_cols=111 Identities=10% Similarity=0.119 Sum_probs=72.2
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCC----------CHhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~----------~~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
..+.+|||+|+.. +...+..+++.++++|+|+|+++.+ ..++...+.+.+... +...+.|+|
T Consensus 193 ~~l~iwDt~GQe~-------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~-~~~~~~pii 264 (353)
T 1cip_A 193 LHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN-KWFTDTSII 264 (353)
T ss_dssp EEEEEEEECCSGG-------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEE
T ss_pred eeEEEEeCCCchh-------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC-ccccCCcEE
Confidence 3789999999843 4455667789999999999999843 244444444444321 112478999
Q ss_pred EEEeCCCCCChH----------------HHHHHHHHHHH----h---------cCCceecccccccHHHHHHHHHhhc
Q 012884 371 VVLNKIDLPEAR----------------DRLQSLTEEIL----K---------IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 371 vV~NK~Dl~~~~----------------e~~~~l~~~l~----~---------~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+|+||+|+.... ...++..+.+. . +.+.++++.+..++.+.+..+....
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 999999985321 01222222222 1 2234678888889999998887544
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.09 E-value=1.3e-06 Score=88.92 Aligned_cols=111 Identities=12% Similarity=0.144 Sum_probs=67.3
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
..+.+|||+|+.. +...+..+++.++++|||+|+++ ....++...+.+.+... ....+.|+|
T Consensus 201 ~~l~i~Dt~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~-~~~~~~piI 272 (362)
T 1zcb_A 201 VPFKMVDVGGQRS-------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSII 272 (362)
T ss_dssp EEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEE
T ss_pred eEEEEEeccchhh-------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc-hhhCCCCEE
Confidence 3799999999943 34456667789999999999998 33444444444444321 112478999
Q ss_pred EEEeCCCCCChH-----------------HHHHHHHHHH----Hh---------cCCceecccccccHHHHHHHHHhhc
Q 012884 371 VVLNKIDLPEAR-----------------DRLQSLTEEI----LK---------IGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 371 vV~NK~Dl~~~~-----------------e~~~~l~~~l----~~---------~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
+|+||+|+.... ...++..+.+ .. +.+.++++.+..++.+.+..+....
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 999999986321 1122222222 11 1234678888888888888776543
No 216
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.04 E-value=8.4e-06 Score=88.30 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=40.5
Q ss_pred ccEEEecCCCCccccc--cCCcccch---hhcc-cc-cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 012884 301 SEATLADLPGLIEGAH--LGKGLGRN---FLRH-LR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 373 (454)
Q Consensus 301 ~~i~liDTPGii~~a~--~~~~lg~~---fl~~-i~-~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~ 373 (454)
..++++|.||+..... +....... .+.. +. ...+++.|+++......++...+..++. ..+.+.|+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~-----~~g~rtI~Vl 221 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD-----PEGDRTIGIL 221 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC-----SSCCSEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh-----hcCCceEEEe
Confidence 3589999999876322 22222222 2222 33 3467777777654333333333333333 2368999999
Q ss_pred eCCCCCCh
Q 012884 374 NKIDLPEA 381 (454)
Q Consensus 374 NK~Dl~~~ 381 (454)
||+|+.+.
T Consensus 222 TK~Dlv~~ 229 (608)
T 3szr_A 222 TKPDLVDK 229 (608)
T ss_dssp ECGGGSSS
T ss_pred cchhhcCc
Confidence 99999854
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.96 E-value=5.5e-06 Score=84.02 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=49.9
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCC----------CCCCHhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas----------~~~~~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
..+.+|||+|+.+ +...+..+++.++++|+|+|++ +....++...+.+++.... ...+.|+|
T Consensus 183 v~l~iwDtaGQe~-------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~pii 254 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFM 254 (354)
T ss_dssp -EEEEEEECCSTT-------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEE
T ss_pred eeeEEEECCCchh-------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEE
Confidence 3799999999843 3445666788999999999998 3444455554544444321 12468999
Q ss_pred EEEeCCCCC
Q 012884 371 VVLNKIDLP 379 (454)
Q Consensus 371 vV~NK~Dl~ 379 (454)
+|+||+|+.
T Consensus 255 LvgNK~DL~ 263 (354)
T 2xtz_A 255 LFLNKFDIF 263 (354)
T ss_dssp EEEECHHHH
T ss_pred EEEECcchh
Confidence 999999985
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.94 E-value=5.1e-06 Score=83.89 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=50.4
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCC----------CCCCHhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas----------~~~~~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
.++.+|||+|+. .+...+..+++.++++|+|+|++ ......+...+.+.+... +...+.|++
T Consensus 161 v~l~iwDtaGQe-------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~-~~~~~~pii 232 (340)
T 4fid_A 161 IPFHLIDVGGQR-------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN-EFLKGAVKL 232 (340)
T ss_dssp CEEEEEECCSCH-------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC-GGGTTSEEE
T ss_pred eeeccccCCCcc-------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh-hccCCCeEE
Confidence 379999999984 34445667789999999999998 333344444444444321 123478999
Q ss_pred EEEeCCCCCC
Q 012884 371 VVLNKIDLPE 380 (454)
Q Consensus 371 vV~NK~Dl~~ 380 (454)
+|+||+|+..
T Consensus 233 Lv~NK~DL~~ 242 (340)
T 4fid_A 233 IFLNKMDLFE 242 (340)
T ss_dssp EEEECHHHHH
T ss_pred EEEECchhhh
Confidence 9999999864
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.94 E-value=9e-06 Score=83.86 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=52.9
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCC----------CCCHhhHHHHHHHHHhcCCCCCCCCEEE
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV 371 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~----------~~~~~d~~~l~~eL~~~~~~~~~kp~Iv 371 (454)
.+.||||+|+.+ +...+..+++.++++|+|+|+++ ....++...|.+++.... ...+.|+||
T Consensus 218 ~l~iwDtaGQe~-------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~~piiL 289 (402)
T 1azs_C 218 NFHMFDVGGQRD-------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVIL 289 (402)
T ss_dssp EEEEEEECCSGG-------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSSCCEEE
T ss_pred cceecccchhhh-------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCCCeEEE
Confidence 789999999943 34456677889999999999998 555566665655555321 234789999
Q ss_pred EEeCCCCCC
Q 012884 372 VLNKIDLPE 380 (454)
Q Consensus 372 V~NK~Dl~~ 380 (454)
|+||+|+..
T Consensus 290 vgNK~DL~~ 298 (402)
T 1azs_C 290 FLNKQDLLA 298 (402)
T ss_dssp EEECHHHHH
T ss_pred EEEChhhhh
Confidence 999999853
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.91 E-value=3.1e-05 Score=76.53 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=62.3
Q ss_pred cccccccEEEEEEeCCCCC-CHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--HHHHHHHHHHhcCC--ceec
Q 012884 327 RHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGC--DKVT 401 (454)
Q Consensus 327 ~~i~~advll~ViDas~~~-~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e--~~~~l~~~l~~~g~--~~~s 401 (454)
..++.+|++++|+|++++. +...+..|..+++. .++|.++|+||+|+.+..+ ..+++.+.+...++ ..++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEE
Confidence 4688999999999999875 55555555555553 4799999999999987542 24555566665554 4678
Q ss_pred ccccccHHHHHHHHH
Q 012884 402 SETELSSEDAVKSLS 416 (454)
Q Consensus 402 a~~~~~~~e~~~~l~ 416 (454)
+.+..++.+.+..+.
T Consensus 150 A~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 150 AKTGEGIDELVDYLE 164 (302)
T ss_dssp TTTCTTHHHHHHHTT
T ss_pred CCCCCCHHHHHhhcc
Confidence 888888888887654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.90 E-value=1.5e-05 Score=78.16 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=62.2
Q ss_pred EecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHH
Q 012884 305 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR 384 (454)
Q Consensus 305 liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~ 384 (454)
|-+.||+...+ .++++++++++|++++|+|+..+.+..+. .+.+.+ .++|.++|+||+||.+. +.
T Consensus 3 i~w~PGhm~ka------~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~l~~~l-------~~kp~ilVlNK~DL~~~-~~ 67 (282)
T 1puj_A 3 IQWFPGHMAKA------RREVTEKLKLIDIVYELVDARIPMSSRNP-MIEDIL-------KNKPRIMLLNKADKADA-AV 67 (282)
T ss_dssp ------CTTHH------HHHHHHHGGGCSEEEEEEETTSTTTTSCH-HHHHHC-------SSSCEEEEEECGGGSCH-HH
T ss_pred CcCCchHHHHH------HHHHHHHHhhCCEEEEEEeCCCCCccCCH-HHHHHH-------CCCCEEEEEECcccCCH-HH
Confidence 45678986543 35788999999999999999987655431 122222 37999999999999974 44
Q ss_pred HHHHHHHHHhcCCc--eecccccccHHHHHHHH
Q 012884 385 LQSLTEEILKIGCD--KVTSETELSSEDAVKSL 415 (454)
Q Consensus 385 ~~~l~~~l~~~g~~--~~sa~~~~~~~e~~~~l 415 (454)
.+.+.+.+...++. ..++....++.+.+..+
T Consensus 68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i 100 (282)
T 1puj_A 68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPAS 100 (282)
T ss_dssp HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHH
Confidence 56666677655554 45666666666655544
No 222
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.80 E-value=6.1e-06 Score=82.85 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=48.5
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCC-------C---CCCHhhHHHHHHHHHhcCCCCCCCCEE
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA-------A---ENPVNDYRTVKEELRMYNPDYLERPFI 370 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas-------~---~~~~~d~~~l~~eL~~~~~~~~~kp~I 370 (454)
.++.+|||+|+.+ +...+..+++.++++|+|+|.+ + ....++...+.+.+... +...+.|++
T Consensus 167 v~l~iwDtgGQe~-------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~-~~~~~~~ii 238 (327)
T 3ohm_A 167 VIFRMVDVGGQRS-------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY-PWFQNSSVI 238 (327)
T ss_dssp EEEEEEEECCSHH-------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS-GGGTTCEEE
T ss_pred eeeEEEEcCCchh-------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh-hccCCceEE
Confidence 3789999999843 3445667789999999999876 2 22233333333333321 123478999
Q ss_pred EEEeCCCCCC
Q 012884 371 VVLNKIDLPE 380 (454)
Q Consensus 371 vV~NK~Dl~~ 380 (454)
+++||+|+..
T Consensus 239 L~~NK~DL~~ 248 (327)
T 3ohm_A 239 LFLNKKDLLE 248 (327)
T ss_dssp EEEECHHHHH
T ss_pred EEEECchhhh
Confidence 9999999864
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.76 E-value=6.7e-05 Score=78.21 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=42.1
Q ss_pred ccEEEecCCCCccccccCCcccch--hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~--fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..++|+||||.... ...+... -+..+..+|.+++|+|++.+. +....+ ..+.. .-.+..||+||+|.
T Consensus 183 ~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a-~~f~~-----~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKE---DKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQA-LAFKE-----ATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHH-HHHHH-----SCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHH-HHHHh-----hCCCeEEEEECCCC
Confidence 47999999997432 1111111 112234579999999998642 223332 22321 13566799999998
Q ss_pred CChH
Q 012884 379 PEAR 382 (454)
Q Consensus 379 ~~~~ 382 (454)
....
T Consensus 252 ~~~g 255 (443)
T 3dm5_A 252 SAKG 255 (443)
T ss_dssp CSSH
T ss_pred cccc
Confidence 7643
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.68 E-value=7.1e-06 Score=83.39 Aligned_cols=100 Identities=25% Similarity=0.172 Sum_probs=59.5
Q ss_pred eCCceeEEEecCCc----------eeccccCcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCC
Q 012884 190 PVPLGTVVKHKRGK----------LFSDLAHPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNA 257 (454)
Q Consensus 190 ~vPvgtvv~~~~~~----------~~~dl~~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNa 257 (454)
.+|+.+|+||.|-. ++..+...|-++ ++|..|.|...+... +.- .-++++|.+||
T Consensus 160 ~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~----------~~G---~~~~lvG~sG~ 226 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA----------LTG---RISIFAGQSGV 226 (358)
T ss_dssp TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH----------HTT---SEEEEECCTTS
T ss_pred CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh----------cCC---CEEEEECCCCc
Confidence 57889999998741 233344566443 678888765433211 010 13689999999
Q ss_pred CHHHHHHHHHcCCC-C-ccCCC---c----eeeeccceeeeCCCCCCcccccccEEEecCCCCcc
Q 012884 258 GKSTLLAAITHAKP-D-IADYP---F----TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 313 (454)
Q Consensus 258 GKSTLlnaL~~~~~-~-Ia~~p---f----TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~ 313 (454)
|||||+|.|.+... . .+... + ||.....+.+. ....++||||+.+
T Consensus 227 GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-----------q~~~l~dtpgv~e 280 (358)
T 2rcn_A 227 GKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-----------HGGDVIDSPGVRE 280 (358)
T ss_dssp SHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-----------TSCEEEECHHHHT
T ss_pred cHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-----------CCCEecCcccHHH
Confidence 99999999998654 2 23222 1 34433333332 1346799999865
No 225
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.59 E-value=7.5e-05 Score=70.61 Aligned_cols=115 Identities=12% Similarity=0.002 Sum_probs=62.5
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHH-hcCCC--CCCCCEEEEEeCC-C
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR-MYNPD--YLERPFIVVLNKI-D 377 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~-~~~~~--~~~kp~IvV~NK~-D 377 (454)
++....+||-.+..- ...+...|..+++.+|+||||||+++..-.+..+.+. +|. ..++. +.+.|++|.+||. |
T Consensus 97 k~~~~~~~~~~~~GG-Q~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~-eL~~mL~ee~~L~gapLLVlANKqqD 174 (227)
T 3l82_B 97 KMFSRHNEGDDQQGS-RYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS-HIMAMTDPAFGSSGRPLLVLSCISQG 174 (227)
T ss_dssp ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHH-HHHHHSCTTSSCSCSCEEEEEEESST
T ss_pred hcccccCCCccccCc-HHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHH-HHHHHhcchhhhCCCeEEEEeCCCcC
Confidence 455566664111000 1234455667788999999999999864433222221 222 22332 3678999999995 7
Q ss_pred CCChHHHHHHHHHHHH------hcCCceecccccccHHHHHHHHHhhc
Q 012884 378 LPEARDRLQSLTEEIL------KIGCDKVTSETELSSEDAVKSLSTEG 419 (454)
Q Consensus 378 l~~~~e~~~~l~~~l~------~~g~~~~sa~~~~~~~e~~~~l~~~~ 419 (454)
++.+-. ..++.+.+. .+.+..+++.+..++.+.+++++..+
T Consensus 175 lp~Ams-~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 175 DVKRMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TSCBCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred ccCCCC-HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 875422 233333322 23456789999999999999998655
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.59 E-value=6.9e-06 Score=81.76 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=42.9
Q ss_pred eCCceeEEEecCCc---e-------ecccc-CcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCC
Q 012884 190 PVPLGTVVKHKRGK---L-------FSDLA-HPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPN 256 (454)
Q Consensus 190 ~vPvgtvv~~~~~~---~-------~~dl~-~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pN 256 (454)
.+|+.+++||.|-. . +.+.+ ..|.++ ++|..|.|...+.+... =.-++++|.+|
T Consensus 117 ~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~-------------G~~~~lvG~sG 183 (307)
T 1t9h_A 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQ-------------DKTTVFAGQSG 183 (307)
T ss_dssp TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGT-------------TSEEEEEESHH
T ss_pred CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcC-------------CCEEEEECCCC
Confidence 47889999998731 1 12223 345443 57777766544332211 01368999999
Q ss_pred CCHHHHHHHHHcCC
Q 012884 257 AGKSTLLAAITHAK 270 (454)
Q Consensus 257 aGKSTLlnaL~~~~ 270 (454)
||||||+|+|.+..
T Consensus 184 ~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 184 VGKSSLLNAISPEL 197 (307)
T ss_dssp HHHHHHHHHHCC--
T ss_pred CCHHHHHHHhcccc
Confidence 99999999998764
No 227
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.56 E-value=4.1e-05 Score=79.98 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=43.8
Q ss_pred ccccccccCCCCCHHHHHHHHHcC---------------CCCccCCCceeeeccceeeeCCCCC---CcccccccEEEec
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA---------------KPDIADYPFTTLMPNLGRLDGDPTL---GAEKYSSEATLAD 307 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~---------------~~~Ia~~pfTT~~p~~g~v~~~~~~---~~~~~~~~i~liD 307 (454)
+.-|+++|.+|+|||||||.|.+. +..+-....||...+.|.+....-. ........++++|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 345789999999999999999864 2223223346766677775432100 0000123699999
Q ss_pred CCCCccc
Q 012884 308 LPGLIEG 314 (454)
Q Consensus 308 TPGii~~ 314 (454)
|||+...
T Consensus 147 TeG~~~~ 153 (447)
T 3q5d_A 147 TQGTFDS 153 (447)
T ss_dssp EECCCSS
T ss_pred CCccccc
Confidence 9999653
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.47 E-value=0.00024 Score=70.07 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=40.4
Q ss_pred cEEEecCCCCccccccCCcccch--hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDL 378 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~--fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl 378 (454)
.++|+||||..... ....+... .+..+..+|.+++|+|+... .+.+..+. .+.. ..+ ..+|+||+|.
T Consensus 182 D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~-~~~~------~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 182 EIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLAS-KFNQ------ASKIGTIIITKMDG 251 (297)
T ss_dssp SEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHH-HHHH------TCTTEEEEEECGGG
T ss_pred CEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHH-HHHh------hCCCCEEEEeCCCC
Confidence 79999999985410 00111110 01233468999999999753 33333332 2221 244 7889999997
Q ss_pred CCh
Q 012884 379 PEA 381 (454)
Q Consensus 379 ~~~ 381 (454)
...
T Consensus 252 ~~~ 254 (297)
T 1j8m_F 252 TAK 254 (297)
T ss_dssp CTT
T ss_pred Ccc
Confidence 643
No 229
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.46 E-value=8.2e-05 Score=69.37 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=41.2
Q ss_pred cccccCCCCCHHHHHHHHHcCCC-Cc-cCCCceeeeccceeeeCCCCCCcccccccEEEecCCCCcc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP-DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 313 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~-~I-a~~pfTT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~ 313 (454)
|+|+|.+|||||||+++|.+..+ .+ ...+.||+.|..|.+.. ..+.++|...+.+
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G----------~~y~fvs~~~f~~ 78 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDG----------KEYHFISTEEMTR 78 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTT----------SSCEECCHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeecc----------ccceeccHHHhhh
Confidence 57899999999999999998765 23 67788999998876542 2455666655543
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.40 E-value=8.5e-05 Score=72.00 Aligned_cols=91 Identities=27% Similarity=0.288 Sum_probs=59.3
Q ss_pred CCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHHHHHHH
Q 012884 309 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL 388 (454)
Q Consensus 309 PGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e~~~~l 388 (454)
||+...+ .++++.+++++|++++|+|+..+....... +. + + ++|.++|+||+||.+. +..+.+
T Consensus 5 PGhm~ka------~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-l---l-~k~~iivlNK~DL~~~-~~~~~~ 67 (262)
T 3cnl_A 5 PGHIEKA------KRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-F---S-RKETIILLNKVDIADE-KTTKKW 67 (262)
T ss_dssp ----CCT------THHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-C---T-TSEEEEEEECGGGSCH-HHHHHH
T ss_pred chHHHHH------HHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-h---c-CCCcEEEEECccCCCH-HHHHHH
Confidence 6765433 346888999999999999998875543211 11 1 1 7999999999999975 345566
Q ss_pred HHHHHhcCCc-eecccccccHHHHHHHHH
Q 012884 389 TEEILKIGCD-KVTSETELSSEDAVKSLS 416 (454)
Q Consensus 389 ~~~l~~~g~~-~~sa~~~~~~~e~~~~l~ 416 (454)
.+.+...++. ..++....++.+.+..+.
T Consensus 68 ~~~~~~~g~~v~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 68 VEFFKKQGKRVITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHHHCC
T ss_pred HHHHHHcCCeEEEECCCCcCHHHHHHHHH
Confidence 6666655443 566666667766665543
No 231
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.40 E-value=4.3e-05 Score=75.48 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=44.7
Q ss_pred eCCceeEEEecCCc--e----ec---ccc-CcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCC
Q 012884 190 PVPLGTVVKHKRGK--L----FS---DLA-HPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNA 257 (454)
Q Consensus 190 ~vPvgtvv~~~~~~--~----~~---dl~-~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNa 257 (454)
++|+.+|.||.|-. . .. +++ +.|-++ +||+.|.|...+.+... - .-++++|.+||
T Consensus 110 ~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~----------G---~i~~l~G~sG~ 176 (302)
T 2yv5_A 110 KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE----------G---FICILAGPSGV 176 (302)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT----------T---CEEEEECSTTS
T ss_pred CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc----------C---cEEEEECCCCC
Confidence 57899999998731 0 11 112 234333 78888876543221110 0 12588999999
Q ss_pred CHHHHHHHHHcCCC-CccCCC
Q 012884 258 GKSTLLAAITHAKP-DIADYP 277 (454)
Q Consensus 258 GKSTLlnaL~~~~~-~Ia~~p 277 (454)
|||||+|+|. ... ..+...
T Consensus 177 GKSTLln~l~-~~~~~~G~i~ 196 (302)
T 2yv5_A 177 GKSSILSRLT-GEELRTQEVS 196 (302)
T ss_dssp SHHHHHHHHH-SCCCCCSCC-
T ss_pred CHHHHHHHHH-HhhCcccccc
Confidence 9999999999 543 334443
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.32 E-value=0.00021 Score=74.25 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=40.6
Q ss_pred ccEEEecCCCCccccccCCcccch---hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~---fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
..++|+||||..... ....+... +.+.+ ..+.+++|+|+..+. +....+ ..+.. .-.+..||+||+|
T Consensus 180 ~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~-~pd~vlLVlDa~~gq--~a~~~a-~~f~~-----~~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL-KPDDVILVIDASIGQ--KAYDLA-SRFHQ-----ASPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH-CCSEEEEEEEGGGGG--GGHHHH-HHHHH-----HCSSEEEEEECGG
T ss_pred CCEEEEECCCCcccc-CCHHHHHHHHHHHHhh-CCcceEEEEeCccch--HHHHHH-HHHhc-----ccCCcEEEEeccc
Confidence 479999999963300 11112111 12222 458999999998642 222222 22321 1256789999999
Q ss_pred CCCh
Q 012884 378 LPEA 381 (454)
Q Consensus 378 l~~~ 381 (454)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 8754
No 233
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.19 E-value=0.00031 Score=71.37 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=58.2
Q ss_pred hhhccc-ccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHH-HHHHHHhcCC-
Q 012884 324 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQS-LTEEILKIGC- 397 (454)
Q Consensus 324 ~fl~~i-~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~---e~~~~-l~~~l~~~g~- 397 (454)
.+++++ ++++++|+|+|+++... .+..++..+ +.++|+++|+||+|+.+.. +..++ +.+.+...++
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~---l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF---AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH---CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH---hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 466666 78899999999997542 122333333 2379999999999998652 22233 3334555665
Q ss_pred ----ceecccccccHHHHHHHHHh
Q 012884 398 ----DKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 398 ----~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+++....++.+.++.+..
T Consensus 135 ~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 135 PVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp CSEEEECBTTTTBTHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 35788889999998887754
No 234
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.13 E-value=0.0003 Score=71.46 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=57.5
Q ss_pred hhhcccc-cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChH---HHHHHH-HHHHHhcCC-
Q 012884 324 NFLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL-TEEILKIGC- 397 (454)
Q Consensus 324 ~fl~~i~-~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~---e~~~~l-~~~l~~~g~- 397 (454)
.+++++. .++++|+|+|+++.. ..|..++..+. .++|+++|+||+|+.+.. +..+++ ...+...++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV---GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS---SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh---CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 4556665 456999999998631 33444555542 379999999999997643 223332 333455555
Q ss_pred ----ceecccccccHHHHHHHHHh
Q 012884 398 ----DKVTSETELSSEDAVKSLST 417 (454)
Q Consensus 398 ----~~~sa~~~~~~~e~~~~l~~ 417 (454)
..+++.+..++.+.++.+..
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhh
Confidence 45788889999999888754
No 235
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.05 E-value=0.00036 Score=68.90 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=63.7
Q ss_pred cccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHH-HhcCCC--CCCCCEEEEEeC-CCCCChHHHHHHHHHHHH--
Q 012884 320 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPD--YLERPFIVVLNK-IDLPEARDRLQSLTEEIL-- 393 (454)
Q Consensus 320 ~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL-~~~~~~--~~~kp~IvV~NK-~Dl~~~~e~~~~l~~~l~-- 393 (454)
.+...+..+++.+|++|||||+++.+-.+..+.+. +| ...+++ +.+.|++|.+|| .|++.+-. ..++.+.+.
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~-eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L~ 276 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS-HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLN 276 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHH-HHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHH-HHHHHhcchhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCCc
Confidence 34555667788999999999999865433222221 11 111111 357899999996 68876422 233333332
Q ss_pred ----hcCCceecccccccHHHHHHHHHhhcC
Q 012884 394 ----KIGCDKVTSETELSSEDAVKSLSTEGG 420 (454)
Q Consensus 394 ----~~g~~~~sa~~~~~~~e~~~~l~~~~~ 420 (454)
...+..+++.+..++.+.+++++..+.
T Consensus 277 ~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 277 LLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 234567899999999999999987653
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.80 E-value=0.0025 Score=66.11 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=38.5
Q ss_pred ccEEEecCCCCccccccCCcccch--hhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKID 377 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~--fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~D 377 (454)
..++|+||||..... ..+... ....+..++.+++|+|+..+. +.+..+ ..+.. ..+ .-+|+||+|
T Consensus 184 ~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~-~~f~~------~l~i~gvVlnK~D 251 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTA-KAFNE------ALPLTGVVLTKVD 251 (433)
T ss_dssp CSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHH-HHHHH------HSCCCCEEEECTT
T ss_pred CCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHH-HHHhc------cCCCeEEEEecCC
Confidence 379999999975321 111111 112244688999999998652 222222 22221 123 346999999
Q ss_pred CCC
Q 012884 378 LPE 380 (454)
Q Consensus 378 l~~ 380 (454)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 237
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.59 E-value=0.0013 Score=65.94 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++++|.+|||||||++.|.+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999764
No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.45 E-value=0.0017 Score=63.80 Aligned_cols=69 Identities=25% Similarity=0.195 Sum_probs=42.4
Q ss_pred eCCceeEEEecCCc---------eeccccCcCcce--eeecCCCCCCCccccchhhhccccccccccccccccccCCCCC
Q 012884 190 PVPLGTVVKHKRGK---------LFSDLAHPGDEV--LVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKGLPNAG 258 (454)
Q Consensus 190 ~vPvgtvv~~~~~~---------~~~dl~~~g~~~--i~A~gG~Gg~~~~~~~~~~~~~~~~l~~k~~adVglVG~pNaG 258 (454)
++|+.+|.||.|-. .+++.+...-.+ +||+.|.|...+... +.- .-++++|.+|||
T Consensus 115 ~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~----------l~g---eiv~l~G~sG~G 181 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY----------LKG---KISTMAGLSGVG 181 (301)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH----------HSS---SEEEEECSTTSS
T ss_pred CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHH----------hcC---CeEEEECCCCCc
Confidence 57899999998731 111122110223 788888664332211 000 125789999999
Q ss_pred HHHHHHHHHcCCC
Q 012884 259 KSTLLAAITHAKP 271 (454)
Q Consensus 259 KSTLlnaL~~~~~ 271 (454)
||||||+|.+...
T Consensus 182 KSTll~~l~g~~~ 194 (301)
T 1u0l_A 182 KSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhccccc
Confidence 9999999988643
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.43 E-value=0.0037 Score=61.50 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=38.6
Q ss_pred ccEEEecCCCCccccccCCcccchhhcccc--cccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 301 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~~~~lg~~fl~~i~--~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
..++|+||||..... ..+...+.+.+. ..+.+++|+|++.. .+++..+ .+.+. ..+ ..-+|+||+|.
T Consensus 183 ~dlvIiDT~G~~~~~---~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~---~~~~~--~l~-~~giVltk~D~ 251 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD---PQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHI---VKRFS--SVP-VNQYIFTKIDE 251 (296)
T ss_dssp SSEEEEECCCCCTTS---HHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHH---TTTTS--SSC-CCEEEEECTTT
T ss_pred CCEEEEeCCCCChhh---HHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHH---HHHHh--cCC-CCEEEEeCCCc
Confidence 379999999986431 111111222222 36778999998753 3333332 33332 122 24567799997
Q ss_pred CCh
Q 012884 379 PEA 381 (454)
Q Consensus 379 ~~~ 381 (454)
...
T Consensus 252 ~~~ 254 (296)
T 2px0_A 252 TTS 254 (296)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 240
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.34 E-value=0.0029 Score=62.60 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+++|..|||||||++.|.+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999753
No 241
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.33 E-value=0.0028 Score=66.91 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.8
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++|||..|||||||++.|.+.
T Consensus 296 I~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHH
Confidence 689999999999999999753
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.31 E-value=0.0083 Score=59.47 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=47.0
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH---HHHHHHHHHHhcCCcee
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV 400 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e---~~~~l~~~l~~~g~~~~ 400 (454)
.+.++|.+++|+|+..+.+..+ .+...|.... ..++|.+||+||+||.+..+ ..+.+.+.+...++...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 5788999999999987654443 2333332110 14799999999999987643 35677777776676443
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.27 E-value=0.0028 Score=62.80 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=18.3
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|+++|.+|+||||++..|.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 368999999999999998864
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.0025 Score=57.39 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=29.1
Q ss_pred cccccCCCCCHHHHHHHHHcCCCC-c-cCCCceeeeccceee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRL 288 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~-I-a~~pfTT~~p~~g~v 288 (454)
++++|.+|||||||++.|.+..+. . .....||+.|..+.+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~ 49 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE 49 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC
T ss_pred EEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcccc
Confidence 689999999999999999886542 2 556678887766644
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.12 E-value=0.0073 Score=60.09 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=38.6
Q ss_pred ccEEEecCCCCcccccc-CCcccc--hhhc-c-cccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 012884 301 SEATLADLPGLIEGAHL-GKGLGR--NFLR-H-LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 375 (454)
Q Consensus 301 ~~i~liDTPGii~~a~~-~~~lg~--~fl~-~-i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK 375 (454)
..++|+||||....... -..+.. ..+. . -..+|.+++|+|+... .+.+..+ ..+.+. -...-+|+||
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~----~~~~~~--~~i~GvVltk 263 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA----EEFSKV--ADVSGIILTK 263 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH----HHHTTT--SCCCEEEEEC
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH----HHHhhc--CCCcEEEEeC
Confidence 37999999998543100 000100 0010 1 1347899999999843 3433333 333322 1234578999
Q ss_pred CCCCC
Q 012884 376 IDLPE 380 (454)
Q Consensus 376 ~Dl~~ 380 (454)
+|...
T Consensus 264 ~d~~~ 268 (320)
T 1zu4_A 264 MDSTS 268 (320)
T ss_dssp GGGCS
T ss_pred CCCCC
Confidence 99654
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.78 E-value=0.0047 Score=56.77 Aligned_cols=42 Identities=33% Similarity=0.415 Sum_probs=34.6
Q ss_pred cccccCCCCCHHHHHHHHHcCCCC-c-cCCCceeeeccceeeeC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDG 290 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~-I-a~~pfTT~~p~~g~v~~ 290 (454)
|.|+|++||||+||+++|....+. + -..+.||+.|..|.++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G 47 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNG 47 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCC
Confidence 457899999999999999877653 4 57889999988887654
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.52 E-value=0.0043 Score=56.86 Aligned_cols=41 Identities=32% Similarity=0.301 Sum_probs=29.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCc--cCCCceeeeccceee
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRL 288 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~I--a~~pfTT~~p~~g~v 288 (454)
-++|+|.+|||||||++.|.+..+.. .+...||+.|..|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~ 48 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE 48 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc
Confidence 46899999999999999998754322 334456666655543
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.40 E-value=0.0088 Score=55.06 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.0
Q ss_pred cccccCCCCCHHHHHHHHHcCCCC-c-cCCCceeeeccceee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRL 288 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~-I-a~~pfTT~~p~~g~v 288 (454)
|+++|.+|||||||++.|.+..+. + .....||+.+..+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~ 52 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQ 52 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCccc
Confidence 688999999999999999987542 3 556677877766543
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.33 E-value=0.0079 Score=55.02 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=30.0
Q ss_pred cccccCCCCCHHHHHHHHHcCCCC-c-cCCCceeeeccceeee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLD 289 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~-I-a~~pfTT~~p~~g~v~ 289 (454)
|.++|.+|||||||.+.|...-+. + .....||+.+..+.+.
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~ 57 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETN 57 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCB
T ss_pred EEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCC
Confidence 578999999999999999875432 3 3345678777655443
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.16 E-value=0.0066 Score=54.76 Aligned_cols=40 Identities=33% Similarity=0.339 Sum_probs=29.6
Q ss_pred cccccCCCCCHHHHHHHHHcCCCCc--cCCCceeeeccceee
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRL 288 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~~I--a~~pfTT~~p~~g~v 288 (454)
++|+|.+|||||||++.|.+..+.. .....||+.|..+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 5899999999999999998765421 334567776666654
No 251
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.97 E-value=0.049 Score=56.30 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=37.1
Q ss_pred cEEEecCCCCccccccCCcccchh--hcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~f--l~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.++|+||||.... ...+-... +..+-.+|.+++|+|+... .+.+..+ ..|++. -...-||+||+|..
T Consensus 182 DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a----~~f~~~--l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 182 DLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVA----RAFDEK--VGVTGLVLTKLDGD 250 (425)
T ss_dssp SEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHH----HHHHHH--TCCCEEEEESGGGC
T ss_pred CEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHH----HHHHhc--CCceEEEEeCcCCc
Confidence 6999999997532 11111111 1112257889999998754 2222222 222211 12356789999975
Q ss_pred C
Q 012884 380 E 380 (454)
Q Consensus 380 ~ 380 (454)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 4
No 252
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.75 E-value=0.088 Score=53.20 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=49.2
Q ss_pred ccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCChHH--HHHHHHHHHHhcCCce--eccc
Q 012884 328 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCDK--VTSE 403 (454)
Q Consensus 328 ~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~~e--~~~~l~~~l~~~g~~~--~sa~ 403 (454)
.+.++|.+++| |+..+.+.. ..+...|.... ..++|.+||+||+||.+..+ ..+++...+...|+.. +++.
T Consensus 127 i~anvD~v~iv-~a~~P~~~~--~~i~r~L~~a~--~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSL--NIIDRYLVGCE--TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCH--HHHHHHHHHHH--HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEE-EeCCCCCCH--HHHHHHHHHHH--hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 45789999976 554443322 23333332100 13688899999999987643 2556666777777754 3455
Q ss_pred ccccHHHHHHH
Q 012884 404 TELSSEDAVKS 414 (454)
Q Consensus 404 ~~~~~~e~~~~ 414 (454)
...++.+....
T Consensus 202 ~~~gl~~L~~~ 212 (358)
T 2rcn_A 202 TQDGLKPLEEA 212 (358)
T ss_dssp TTBTHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 56666665543
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.71 E-value=0.012 Score=55.31 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=28.3
Q ss_pred cccccCCCCCHHHHHHHHHcCCC--Cc-cCCCceeeecc
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPN 284 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~--~I-a~~pfTT~~p~ 284 (454)
++++|..|||||||++.|.+..+ .+ .....||+.+.
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~ 57 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR 57 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCC
Confidence 57899999999999999998765 23 55667776554
No 254
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.37 E-value=0.014 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|.+|||||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998753
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.16 E-value=0.017 Score=51.62 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.4
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+|||||||++.|.+.
T Consensus 12 i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.08 E-value=0.018 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.5
Q ss_pred cccccCCCCCHHHHHHHHHcCCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~ 271 (454)
++++|.+|||||||++.|.+..+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 68999999999999999987643
No 257
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.94 E-value=0.095 Score=47.04 Aligned_cols=83 Identities=10% Similarity=-0.006 Sum_probs=52.9
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++|+|||+... ......+..+|.++++++.+... .....+.+.++.......+.++.+|+|++|....
T Consensus 77 D~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~ 145 (206)
T 4dzz_A 77 DFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT 145 (206)
T ss_dssp SEEEEECCSSSS---------HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE
T ss_pred CEEEEECCCCCC---------HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch
Confidence 799999998742 23445566799999999987654 5555566666654321224577899999995432
Q ss_pred HHHHHHHHHHHHhcCC
Q 012884 382 RDRLQSLTEEILKIGC 397 (454)
Q Consensus 382 ~e~~~~l~~~l~~~g~ 397 (454)
..+++.+.+++++.
T Consensus 146 --~~~~~~~~l~~~~~ 159 (206)
T 4dzz_A 146 --MLNVLKESIKDTGV 159 (206)
T ss_dssp --EEHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHcCC
Confidence 11234444444443
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.92 E-value=0.02 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.7
Q ss_pred cccccCCCCCHHHHHHHHHcCCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~ 271 (454)
++|+|.+|||||||++.|.+..+
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 68999999999999999988654
No 259
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.85 E-value=0.016 Score=53.99 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=20.9
Q ss_pred cccccCCCCCHHHHHHHHH-cCCCCc-cCCCceeeeccce
Q 012884 249 DTDKGLPNAGKSTLLAAIT-HAKPDI-ADYPFTTLMPNLG 286 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~-~~~~~I-a~~pfTT~~p~~g 286 (454)
++|+|.+|||||||++.|. +..+.+ .....+|..+..+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g 69 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKG 69 (231)
T ss_dssp EEEECSCC----CHHHHHHC----CEEECCCEESSCCCTT
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcc
Confidence 6899999999999999999 764333 3344455555444
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.69 E-value=0.021 Score=52.29 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+|+|.++||||||++.|.+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.34 E-value=0.028 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.0
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~ 271 (454)
-++|+|.+|||||||++.|.+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378999999999999999988653
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.26 E-value=0.031 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+++|.+|||||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 263
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.16 E-value=0.033 Score=49.59 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=17.2
Q ss_pred cccccCCCCCHHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~ 267 (454)
++++|.+|||||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999865
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.06 E-value=0.034 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=18.4
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
++++|.+|||||||++.|.+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999975
No 265
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.05 E-value=0.033 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999999854
No 266
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.98 E-value=0.032 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=20.0
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998853
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.82 E-value=0.038 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-|+++|.+|||||||++.|.+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 36899999999999999998764
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.79 E-value=0.039 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+++|.+|||||||++.|.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999999764
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.71 E-value=0.037 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=19.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-||++|.+|||||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.71 E-value=0.044 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=21.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.-++++|..|||||||++.|.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457999999999999999999864
No 271
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.56 E-value=0.042 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.297 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998864
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.52 E-value=0.044 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999999864
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.50 E-value=0.044 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998763
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.49 E-value=0.044 Score=52.89 Aligned_cols=22 Identities=41% Similarity=0.279 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
+|++|..|||||||++.|.+-.
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999999864
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.44 E-value=0.046 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999863
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.44 E-value=0.046 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998864
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.41 E-value=0.046 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+--
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999999864
No 278
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.40 E-value=0.047 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+.-
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998864
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.36 E-value=0.047 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.28 E-value=0.048 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.130 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998864
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.27 E-value=0.046 Score=54.00 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.++|+|.+|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 4799999999999999999864
No 282
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.24 E-value=0.044 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=19.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|..|||||||++.|.+.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999886
No 283
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.24 E-value=0.053 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.262 Sum_probs=19.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|..|||||||++.|.+-
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.23 E-value=0.049 Score=51.55 Aligned_cols=22 Identities=41% Similarity=0.321 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.21 E-value=0.05 Score=52.45 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCCcHHHHHHHHHcCC
Confidence 6899999999999999999864
No 286
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.19 E-value=0.055 Score=50.78 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHH
Q 012884 248 DDTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~ 267 (454)
-|+++|.+|||||||++.|.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.16 E-value=0.052 Score=47.79 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+++|.+|||||||.+.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 3689999999999999999753
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.10 E-value=0.056 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=20.0
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++++|..|||||||++.|.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999985
No 289
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.09 E-value=0.053 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.176 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999999864
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.02 E-value=0.055 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.329 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999999864
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.00 E-value=0.054 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 36899999999999999999863
No 292
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.99 E-value=0.059 Score=49.85 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=17.7
Q ss_pred cccccCCCCCHHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~ 267 (454)
++++|.+|||||||++.|+
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5889999999999999887
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.95 E-value=0.057 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.++++|.+|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4689999999999999999875
No 294
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.92 E-value=0.053 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=19.0
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|.++||||||++.|.+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999873
No 295
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.83 E-value=0.058 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++|+|..|||||||++.|.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999864
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.79 E-value=0.06 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999999864
No 297
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.78 E-value=0.059 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.77 E-value=0.062 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=20.0
Q ss_pred cccccccCCCCCHHHHHHHHHcC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~ 269 (454)
.-++++|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 34689999999999999999864
No 299
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.75 E-value=0.059 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|+++|.++|||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 478999999999999999986
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.69 E-value=0.066 Score=46.20 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.9
Q ss_pred cccccCCCCCHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAI 266 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL 266 (454)
|+++|.|||||||+.+.|
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999999999
No 301
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.69 E-value=0.061 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999998864
No 302
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.65 E-value=0.065 Score=49.11 Aligned_cols=22 Identities=41% Similarity=0.351 Sum_probs=19.6
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|+|+|.+|+||||+.+.|.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.64 E-value=0.069 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.117 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|+++|.++|||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.47 E-value=0.069 Score=48.45 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=18.8
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+|+|||||.+.|.+.
T Consensus 28 i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999764
No 305
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.45 E-value=0.07 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.022 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.++|.|+|||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999754
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.41 E-value=0.069 Score=51.29 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.3
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|.+|+|||||++.|.+.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 689999999999999999874
No 307
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=91.29 E-value=0.32 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.9
Q ss_pred ccccccccCCCCCHHHHHHHHH
Q 012884 246 MRDDTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~ 267 (454)
+.-|+++|.+++|||+|+|.|.
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4457899999999999999765
No 308
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.24 E-value=0.072 Score=52.60 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=19.3
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|||+|.+|||||||++.|.+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhh
Confidence 799999999999999999874
No 309
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.00 E-value=0.081 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++++|.||+|||||++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999999999764
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.99 E-value=0.081 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.5
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+|+|.+|||||||.+.|...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 311
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.94 E-value=0.082 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998864
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.87 E-value=0.084 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|||+|..+||||||++.|.+.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999764
No 313
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.79 E-value=0.09 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
+|++|..|||||||++.|.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 6899999999999999999864
No 314
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.59 E-value=0.06 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=20.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.+||||..|||||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 4799999999999999999875
No 315
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.59 E-value=0.045 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|+++|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 316
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.58 E-value=0.1 Score=45.59 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=18.3
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|.++|.|+|||||+.+.|..
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 56889999999999999986
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.53 E-value=0.099 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.0
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+++|.+++|||||.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999875
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.49 E-value=0.1 Score=47.28 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=20.4
Q ss_pred ccccccccCCCCCHHHHHHHHHcC
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~~ 269 (454)
...|.++|.|+|||||+.+.|...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345789999999999999999753
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.48 E-value=0.099 Score=46.71 Aligned_cols=21 Identities=38% Similarity=0.308 Sum_probs=18.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.++|||||+.+.|...
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 678999999999999999763
No 320
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.13 E-value=0.097 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|..|||||||++.|.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998864
No 321
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.86 E-value=0.09 Score=52.62 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.3
Q ss_pred cccccccCCCCCHHHHHHHHHcCC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+++++|.+|+|||||++.|.+.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998753
No 322
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.84 E-value=0.11 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.071 Sum_probs=19.8
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|||+|.+|||||||++.|.+.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999999874
No 323
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.83 E-value=0.097 Score=45.75 Aligned_cols=21 Identities=38% Similarity=0.210 Sum_probs=19.1
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|.+|+|||||++++.+.
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999874
No 324
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.80 E-value=0.59 Score=42.73 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=51.2
Q ss_pred cEEEecCCCC-ccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 302 EATLADLPGL-IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGi-i~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.++|+|||+. ... .....+..+|.+|++++.+.. .......+.+.++... +.++.+|+|++|...
T Consensus 69 D~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDE---------DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG----NNRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC----SSSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc----CCCEEEEEEecCCcc
Confidence 7999999986 321 344556779999999998642 2334444445555432 466889999999764
Q ss_pred -hHHHHHHHHHHHHhcCCc
Q 012884 381 -ARDRLQSLTEEILKIGCD 398 (454)
Q Consensus 381 -~~e~~~~l~~~l~~~g~~ 398 (454)
.. .+++.+.+.+++..
T Consensus 135 ~~~--~~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 135 SKD--GDEARQLLTTAGLP 151 (209)
T ss_dssp SCH--HHHHHHHHHHTTCC
T ss_pred chH--HHHHHHHHHHcCCc
Confidence 22 24445555555543
No 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.79 E-value=0.12 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..||||||||+.|.+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999999864
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.67 E-value=0.12 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..|||||||++.|.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999999864
No 327
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.63 E-value=0.13 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..||||||||+.|.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 6899999999999999999864
No 328
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.57 E-value=0.14 Score=44.93 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.6
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.++|+|||||||+.+.|...
T Consensus 6 i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999864
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.57 E-value=0.14 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.6
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|+++|.|+|||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999974
No 330
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.50 E-value=0.12 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.0
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|+++|.+++|||||++.|.+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999975
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.47 E-value=0.12 Score=45.53 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.5
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.+.|.|+|||||+.+.|...
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999753
No 332
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.41 E-value=0.13 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred cccccCCCCCHHHHHHHHHcCCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~ 271 (454)
++++|..||||||||+.|.+-.+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCcHHHHHHHHHHcCCC
Confidence 68999999999999999998643
No 333
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.40 E-value=0.14 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.288 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..||||||||+.|.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999999864
No 334
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.38 E-value=0.11 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|.+|+|||||++.|.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 335
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.29 E-value=0.14 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=20.6
Q ss_pred cccccCCCCCHHHHHHHHHcCCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~ 271 (454)
++|+|..|||||||++.|.+-.+
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 68999999999999999998643
No 336
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.28 E-value=0.13 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|.+|+|||||+++|.+.-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999753
No 337
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.22 E-value=0.15 Score=44.95 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.1
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|.+.|.|+|||||+.+.|..
T Consensus 6 I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999965
No 338
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.22 E-value=0.14 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.1
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..||||||||+.|.+-.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 6899999999999999999864
No 339
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.06 E-value=0.14 Score=45.30 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.0
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|.++|.|||||||+.+.|..
T Consensus 8 I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999975
No 340
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.03 E-value=0.15 Score=48.19 Aligned_cols=20 Identities=40% Similarity=0.360 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHH
Q 012884 248 DDTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~ 267 (454)
-|+|+|.+|||||||++.|.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999998
No 341
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.01 E-value=0.14 Score=51.57 Aligned_cols=21 Identities=38% Similarity=0.324 Sum_probs=19.1
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+|+|||||+++|.+.
T Consensus 126 i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999764
No 342
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.94 E-value=0.16 Score=44.97 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=18.6
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+++||||+.+.|...
T Consensus 8 i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999763
No 343
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.76 E-value=0.15 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++|+|.||+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999875
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.67 E-value=0.18 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.6
Q ss_pred cccccccCCCCCHHHHHHHHHcC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~ 269 (454)
..|.++|.|++||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999653
No 345
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.64 E-value=0.16 Score=46.05 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.9
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
++++|.+|+|||||++.|..
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999974
No 346
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.60 E-value=0.17 Score=45.04 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.5
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.++|.+|+||||+.+.|...
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999753
No 347
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.55 E-value=0.15 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.3
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+|+|||||+++|.+.
T Consensus 139 i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.52 E-value=0.17 Score=45.41 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=18.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.+.|.|+|||||+.+.|...
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999753
No 349
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.47 E-value=0.18 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|++.|.++|||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3688999999999999999864
No 350
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.36 E-value=0.13 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.1
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|+.|||||||||.|.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 35789999999999999999763
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.28 E-value=0.18 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.4
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
+.++|.||+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.26 E-value=0.18 Score=44.60 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=18.2
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|++.|.|+|||||+.+.|..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999975
No 353
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.23 E-value=0.13 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..||||||||+.|.+-.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCccHHHHHHHHHcCC
Confidence 6899999999999999999864
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.21 E-value=0.19 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.7
Q ss_pred cccccccCCCCCHHHHHHHHHcC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~ 269 (454)
.-++++|.+|+|||||+++|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999999764
No 355
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.20 E-value=0.17 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=20.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++|+|..||||||||+.|.+-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 36899999999999999998753
No 356
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.19 E-value=0.18 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|+++|.|+|||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 357
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.13 E-value=0.2 Score=44.21 Aligned_cols=20 Identities=40% Similarity=0.306 Sum_probs=18.1
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|+++|.|+|||||+.+.|..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999865
No 358
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.09 E-value=0.17 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=18.5
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|.||+|||||++.|.+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999998764
No 359
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.95 E-value=0.19 Score=50.00 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=18.9
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
||++|.++||||||++.|.+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999998654
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.92 E-value=0.082 Score=47.87 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.5
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+|||||||++.|...
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999753
No 361
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.86 E-value=0.2 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.6
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|++.|.++|||||+.+.|...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999754
No 362
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.78 E-value=0.19 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+++||..|||||||++.|.+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999764
No 363
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.50 E-value=0.21 Score=45.34 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=18.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|++.|.|+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999643
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.49 E-value=0.21 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=18.7
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|++.|.|+|||||+.+.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 368899999999999999975
No 365
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.48 E-value=0.12 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++++|..||||||||+.|.+-.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999999864
No 366
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.44 E-value=0.23 Score=43.82 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.7
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|.++|.|++||||+.+.|..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999974
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.44 E-value=0.22 Score=43.16 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=18.3
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|++.|.|+|||||+.+.|..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999975
No 368
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.42 E-value=0.21 Score=44.61 Aligned_cols=22 Identities=27% Similarity=0.081 Sum_probs=19.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+|+|.++|||||+.+.|...
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4789999999999999999865
No 369
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.37 E-value=0.23 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|.++|.|+|||||+.+.|...
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999653
No 370
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.35 E-value=0.72 Score=42.24 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=41.8
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 377 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~D 377 (454)
.++|+|||+-... .....+..||.+|+|++.+. ........+.+.+.... -..+.+|+||++
T Consensus 133 D~viiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~~----~~~~~~v~N~~~ 194 (254)
T 3kjh_A 133 EAVVMDMGAGIEH---------LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDLG----IKKVRYVINKVR 194 (254)
T ss_dssp SEEEEEECTTCTT---------CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHHT----CSCEEEEEEEEC
T ss_pred CEEEEeCCCcccH---------HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHcC----CccEEEEEeCCC
Confidence 6899999986422 33455677999999999864 22344444445555443 256789999998
No 371
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.33 E-value=0.2 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.4
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-++++|.+|||||||+++|++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999998753
No 372
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.24 E-value=0.21 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.173 Sum_probs=19.3
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|.+|+|||||+++|++.
T Consensus 170 i~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 688999999999999999875
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.24 E-value=0.16 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.3
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|+++|..|||||||++.|.+.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 374
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.17 E-value=0.23 Score=44.09 Aligned_cols=21 Identities=29% Similarity=0.181 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|.++|.|+|||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999975
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.14 E-value=0.23 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.0
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|+|.|.|+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999653
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.11 E-value=0.23 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=19.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+++|.|+|||||+.+.|...
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.07 E-value=0.23 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=18.7
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|++.|.|+|||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368899999999999999975
No 378
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.05 E-value=0.23 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+||+|..|||||||++.|.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.03 E-value=0.23 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.2
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-|.|+|.||+|||||+++|.+.-
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 37899999999999999998753
No 380
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.00 E-value=0.22 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=20.2
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
+||+|..|||||||++.|++.-
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 5899999999999999999863
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.93 E-value=0.26 Score=42.82 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.+.|.|+|||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999753
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.89 E-value=0.24 Score=43.67 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.3
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
.+|+|..++|||||+.+|...
T Consensus 29 ~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999653
No 383
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.82 E-value=0.24 Score=48.32 Aligned_cols=21 Identities=24% Similarity=-0.007 Sum_probs=18.7
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-||++|.++||||||.+.|.+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998865
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.81 E-value=0.24 Score=45.15 Aligned_cols=21 Identities=29% Similarity=0.166 Sum_probs=18.9
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|+|.|.++|||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999975
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.72 E-value=0.24 Score=47.29 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|+|+|+++|||||+.+.|.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 386
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.65 E-value=0.27 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.++|.|++||||+.+.|...
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999753
No 387
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.59 E-value=1.5 Score=42.18 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=41.8
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL 378 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I-vV~NK~Dl 378 (454)
.++|+|||+..... .+...+..||.+|+|++.+. ........+.+.++..... .+.+++ +|+|+++.
T Consensus 158 D~ViiD~p~~~~~~--------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 158 DVVIFDVLGDVVCG--------GFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKN-YKVRLAGCVANRSRA 225 (307)
T ss_dssp SEEEEEECCSSCCG--------GGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTT-CCCEEEEEEEESCSC
T ss_pred CEEEEeCCCccchH--------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhc-CCCceEEEEEecCCc
Confidence 79999998864321 23345677999999998753 2234444445555543211 234444 89999984
No 388
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.55 E-value=0.26 Score=45.25 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|.|++|||||+..|...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 578999999999999999873
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.54 E-value=0.25 Score=43.43 Aligned_cols=22 Identities=32% Similarity=0.218 Sum_probs=19.0
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|++.|.|+|||||+.+.|...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3688999999999999999753
No 390
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.46 E-value=0.23 Score=51.77 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=20.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.++++|..|||||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999999875
No 391
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.41 E-value=0.25 Score=48.68 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+.|+|.||+|||||++.|.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4688999999999999999875
No 392
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.28 E-value=0.27 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=20.3
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
+||+|..|||||||++.|.+..
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHhcCC
Confidence 6899999999999999999864
No 393
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.26 E-value=0.87 Score=38.92 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|-+.|.||+|||+|..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4668999999999999999764
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.25 E-value=0.29 Score=43.22 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.6
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|+++|.|++||||+-+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 395
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.19 E-value=0.25 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.173 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+||+|.++||||||++.|.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 396
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.12 E-value=0.16 Score=47.93 Aligned_cols=22 Identities=45% Similarity=0.373 Sum_probs=19.5
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
++|+|..+||||||+++|.+.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999999998753
No 397
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.08 E-value=0.28 Score=44.27 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=18.2
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
++++|.|++|||||+..|..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999986
No 398
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.98 E-value=1.2 Score=40.75 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=44.5
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.++|+|||+.... .....+..||.+++|+..+. ........+.+.++.+.. ....+.+|+|++|...
T Consensus 120 D~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 120 DYIIVDFGASIDH---------VGVWVLEHLDELCIVTTPSL-QSLRRAGQLLKLCKEFEK--PISRIEIILNRADTNS 186 (245)
T ss_dssp SEEEEEEESSCCT---------THHHHGGGCSEEEEEECSSH-HHHHHHHHHHHHHHTCSS--CCSCEEEEEESTTSCT
T ss_pred CEEEEeCCCCCch---------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhCC--CccceEEEEecCCCCC
Confidence 6899999986421 34455677999999999763 223444555555654431 2356889999998654
No 399
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=85.98 E-value=0.28 Score=45.16 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|.++|.|+|||||+.+.|...
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999753
No 400
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.86 E-value=0.24 Score=43.55 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=14.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.+.|.|+|||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999753
No 401
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.70 E-value=0.28 Score=51.42 Aligned_cols=22 Identities=41% Similarity=0.332 Sum_probs=19.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++|+|..|||||||++.|.+-
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999999764
No 402
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.63 E-value=0.32 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|.++|.|+|||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999753
No 403
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.51 E-value=0.33 Score=43.59 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|++.|.|+|||||+.+.|...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999754
No 404
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.49 E-value=0.34 Score=42.16 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.4
Q ss_pred ccccccccCCCCCHHHHHHHHHc
Q 012884 246 MRDDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 246 ~adVglVG~pNaGKSTLlnaL~~ 268 (454)
+..|++.|.|+|||||+-+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999865
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.39 E-value=0.32 Score=44.35 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=18.5
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.++|.+++||||+.+.|...
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998753
No 406
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.38 E-value=1.5 Score=41.10 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=44.9
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 378 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl 378 (454)
.++|+|||+... ......+..||.+|+|+..+. .....+..+.+.++... .+.++.+|+|+++.
T Consensus 146 D~viiD~pp~~~---------~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~---~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 146 DYIVIDTNPSLD---------VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLN---LFLPIFLIITRFKK 209 (267)
T ss_dssp SEEEEEECSSCS---------HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTT---CCCCEEEEEEEECT
T ss_pred CEEEEECcCCcc---------HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHh---ccCCEEEEEecccC
Confidence 689999998642 234455667999999999864 33555666666676553 24577899999953
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.27 E-value=0.31 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+++||..|||||||++.|.+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 3689999999999999999764
No 408
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.20 E-value=0.31 Score=52.58 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
-+||+|..|||||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 36899999999999999999864
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.07 E-value=0.31 Score=44.41 Aligned_cols=21 Identities=33% Similarity=0.218 Sum_probs=18.6
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|.+.|.|+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999975
No 410
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.89 E-value=0.33 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|..|+|||||++.|.+--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998863
No 411
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.82 E-value=0.37 Score=45.72 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.++|.|||||||+.+.|...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999753
No 412
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.77 E-value=0.31 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++++|..|+|||||++.|.+--
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 47999999999999999998753
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.70 E-value=0.35 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|.++|.|+|||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999753
No 414
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.51 E-value=0.35 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.252 Sum_probs=19.5
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-++++|.||+|||||++.|.+.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3688999999999999999864
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.39 E-value=0.4 Score=44.26 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=18.4
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.+.|.|+|||||+.+.|...
T Consensus 3 I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999753
No 416
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=84.37 E-value=0.29 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+++||..|+|||||++.|.+--
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999998863
No 417
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.24 E-value=0.38 Score=50.95 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.3
Q ss_pred ccccccCCCCCHHHHHHHHHcCCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~ 271 (454)
-+|++|..|+|||||++.|.+..+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 368999999999999999998743
No 418
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.21 E-value=0.36 Score=51.21 Aligned_cols=22 Identities=18% Similarity=0.074 Sum_probs=20.3
Q ss_pred cccccCCCCCHHHHHHHHHcCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~ 270 (454)
+|++|..|||||||++.|.+..
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.11 E-value=0.39 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=19.5
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-||++|.++|||||+.+.|...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 420
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=84.10 E-value=1.1 Score=41.73 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=43.1
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCh
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 381 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~~ 381 (454)
.++|+|+|+... ......+..+|.+|+|++.+.. ...+...+.+.++... ....-+|+|++|....
T Consensus 112 D~viiD~~~~~~---------~~~~~~~~~ad~vi~v~~~~~~-~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 112 DILLLDAPAGLE---------RSAVIAIAAAQELLLVVNPEIS-SITDGLKTKIVAERLG----TKVLGVVVNRITTLGI 177 (263)
T ss_dssp SEEEEECCSSSS---------HHHHHHHHHSSEEEEEECSSHH-HHHHHHHHHHHHHHHT----CEEEEEEEEEECTTTH
T ss_pred CEEEEeCCCCCC---------hHHHHHHHHCCEEEEEeCCChh-HHHHHHHHHHHHHhcC----CCeeEEEEccCCcccc
Confidence 689999997532 2344556779999999987542 2344444455555431 2456689999996543
No 421
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.03 E-value=0.99 Score=41.29 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=42.9
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.++|+|+|+... ......+..+|.+|+|++... ....+...+.+.++... .....+|+|++|...
T Consensus 113 D~viiD~~~~~~---------~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 113 DFILIDCPAGLQ---------LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKAG----LAILGFVLNRYGRSD 177 (237)
T ss_dssp SEEEEECCSSSS---------HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHTT----CEEEEEEEEEETSCT
T ss_pred CEEEEECCCCcC---------HHHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhCC----CceEEEEEecCCccc
Confidence 689999998643 234556678999999998764 22344444455555431 245668999998643
No 422
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.02 E-value=0.33 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+++||..|+|||||++.|.+--
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 57999999999999999998753
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.81 E-value=0.46 Score=41.33 Aligned_cols=18 Identities=44% Similarity=0.458 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHH
Q 012884 250 TDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~ 267 (454)
+++|..++|||||+.+|.
T Consensus 27 ~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 678999999999999985
No 424
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.61 E-value=1.7 Score=41.52 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=42.5
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I-vV~NK~Dl~ 379 (454)
.++|+|||+..... ........||.+|+|+.... .....+..+.+.++. .+.+++ +|+|++|..
T Consensus 193 D~VIIDtpp~~~~~--------d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~-----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 193 NFVIIDTPPVNTVT--------DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA-----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp SEEEEECCCTTTCS--------HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT-----TTCEEEEEEEEEECC-
T ss_pred CEEEEeCCCCchHH--------HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh-----CCCCEEEEEEeCCcCC
Confidence 69999999974321 11222356899999999875 346666666666663 245555 899999864
No 425
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.58 E-value=0.29 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.++|.|||||||+.+.|...
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999764
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.49 E-value=0.38 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.++|+|..++|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999864
No 427
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.42 E-value=0.43 Score=51.39 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.7
Q ss_pred cccccCCCCCHHHHHHHHHcCCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~ 271 (454)
+|++|..|+|||||++.|.+..+
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 68999999999999999998643
No 428
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.27 E-value=0.44 Score=45.10 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=18.4
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.++|.|++|||||-++|...
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 568999999999999999754
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.24 E-value=0.44 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.0
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|.++|.|+|||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999753
No 430
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.18 E-value=0.45 Score=44.45 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.8
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.+.|.|+|||||+++.|...
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999999999765
No 431
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.08 E-value=2.2 Score=41.22 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=44.4
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~~ 380 (454)
.++|+|||.....+ ........||.+|+|+..... ...++....+.++... ....-+|+||+|...
T Consensus 203 D~VIIDtpp~~~~~--------da~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g----~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 203 DLVLIDTPPILAVT--------DAAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNG----IPVKGVILNSIFRRA 268 (286)
T ss_dssp SEEEEECCCTTTCT--------HHHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTT----CCCCEEEEEEECCCC
T ss_pred CEEEEcCCCCcchH--------HHHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCC----CCEEEEEEcCccccc
Confidence 59999999985321 122334569999999998753 3566666666666532 344668999998654
No 432
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.94 E-value=0.47 Score=47.58 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=17.4
Q ss_pred cccccCCCCCHHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~ 267 (454)
.+|+|..|||||||+++|+
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999999997
No 433
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.86 E-value=0.49 Score=40.86 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.5
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
+-+.|.||+|||+|++++...
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999764
No 434
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=82.81 E-value=2 Score=40.17 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=41.0
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCC-CCCCCEE-EEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFI-VVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~-~~~kp~I-vV~NK~Dl~ 379 (454)
.++|+|||+.... .....+..||.+|+|++.+.. .......+.+.++..... ..+.+++ +|+|++|..
T Consensus 113 D~iiiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 113 DLVLLDAPPSLSP---------LTLNALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp SEEEEECCSSCCH---------HHHHHHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CEEEEeCCCCCCH---------HHHHHHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 6899999987432 233455679999999998642 233333333334321100 1234554 899999865
Q ss_pred C
Q 012884 380 E 380 (454)
Q Consensus 380 ~ 380 (454)
.
T Consensus 183 ~ 183 (257)
T 1wcv_1 183 T 183 (257)
T ss_dssp C
T ss_pred c
Confidence 4
No 435
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.49 E-value=0.5 Score=42.23 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.7
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|++.|.+++||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368899999999999999975
No 436
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.49 E-value=0.29 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.5
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+|+||..|+|||||++.|.+.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47899999999999999998753
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.38 E-value=0.5 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.8
Q ss_pred cccccCCCCCHHHHHHHHHcCCC
Q 012884 249 DTDKGLPNAGKSTLLAAITHAKP 271 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~~~ 271 (454)
+|++|..|+|||||++.|.+..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999998754
No 438
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=82.34 E-value=0.54 Score=44.13 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|.+.|.|+|||||+.+.|..
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 439
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.29 E-value=0.49 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.4
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.++|.||||||||.+.|...
T Consensus 36 ivl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999754
No 440
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.18 E-value=0.47 Score=45.22 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=17.7
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
++++|.+++|||||+..|..
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999998875
No 441
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.10 E-value=0.35 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=20.6
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+++||..|+|||||++.|.+--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998753
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.05 E-value=0.56 Score=43.41 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|.++|.|++||||+.+.|...
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999753
No 443
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=81.91 E-value=0.56 Score=44.04 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|+|.|.++|||||+.+.|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 444
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.90 E-value=0.53 Score=43.99 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.++|.||+|||||+++|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4678999999999999999864
No 445
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.73 E-value=0.53 Score=45.33 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.0
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|++.|.++|||||+.+.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999973
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.68 E-value=0.55 Score=43.57 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
.|+++|.+++||||+.+.|..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 447
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.46 E-value=0.36 Score=56.66 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
+||+||.+|+|||||++.|.+-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999864
No 448
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.08 E-value=1.8 Score=45.34 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.4
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
+-|.|.||+|||||+.+|.++
T Consensus 80 lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 80 AMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999865
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.05 E-value=0.63 Score=44.54 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=18.1
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|.++|.|+|||||+.+.|..
T Consensus 5 I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999986
No 450
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.87 E-value=0.74 Score=43.52 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-|+++|.+++||||+.+.|..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999974
No 451
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=79.32 E-value=0.44 Score=50.80 Aligned_cols=22 Identities=41% Similarity=0.386 Sum_probs=19.5
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+|+|.+|||||||++.|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 3689999999999999999864
No 452
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=79.25 E-value=4.5 Score=37.84 Aligned_cols=64 Identities=14% Similarity=-0.009 Sum_probs=40.6
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL 378 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~I-vV~NK~Dl 378 (454)
.++|+|||+...... .....+..+|.+|+|+..+. ....+...+.+.++.. +.+.+ +|+|++|.
T Consensus 130 D~ViID~pp~~~~~~-------~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 130 DHLLIDLPPGTGDAP-------LTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET-----NTSVLGLVENMSYF 194 (262)
T ss_dssp SEEEEECCSSSSSHH-------HHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT-----TCCEEEEEETTCCE
T ss_pred CEEEEECcCCCchHH-------HHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC-----CCCEEEEEECCCcc
Confidence 689999998643210 01111235899999998765 3355555555656542 45666 99999984
No 453
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=78.71 E-value=3.8 Score=38.91 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=42.0
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHh----cCCCCCCCC-EEEEEeCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM----YNPDYLERP-FIVVLNKI 376 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~----~~~~~~~kp-~IvV~NK~ 376 (454)
.++|+|||+.... .....+..+|.+|+|+..+.. .......+.+.+.. ++ .+.+ .-+|+|+.
T Consensus 156 D~IiiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~---~~~~~~gvv~n~~ 222 (298)
T 2oze_A 156 DLIIIDTVPTPSV---------YTNNAIVASDYVMIPLQAEEE-STNNIQNYISYLIDLQEQFN---PGLDMIGFVPYLV 222 (298)
T ss_dssp SEEEEEECSSCSH---------HHHHHHHHCSEEEEEECGGGC-CHHHHHHHHHHHHHHHHHHC---TTCEEEEEEEEES
T ss_pred CEEEEECCCCccH---------HHHHHHHHCCeEEEEecCcHH-HHHHHHHHHHHHHHHHHHhC---CCCeEEEEEEEEE
Confidence 6899999987432 223345569999999998653 34444444444432 22 2445 44899999
Q ss_pred CCCC
Q 012884 377 DLPE 380 (454)
Q Consensus 377 Dl~~ 380 (454)
|...
T Consensus 223 ~~~~ 226 (298)
T 2oze_A 223 DTDS 226 (298)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9754
No 454
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=78.55 E-value=0.81 Score=41.39 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+.+.|.||+|||||+.++...
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999754
No 455
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.53 E-value=3.1 Score=40.65 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|-|.|.||+|||+|..++.+.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 3567899999999999999864
No 456
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.52 E-value=0.8 Score=41.88 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.8
Q ss_pred cccccCCCCCHHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~ 267 (454)
+.++|.|++|||||+..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999976664
No 457
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=78.48 E-value=0.82 Score=40.87 Aligned_cols=22 Identities=36% Similarity=0.305 Sum_probs=18.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+.+.|.||+|||+|+.+|.+.
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999764
No 458
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=78.24 E-value=0.79 Score=47.39 Aligned_cols=103 Identities=15% Similarity=-0.029 Sum_probs=49.9
Q ss_pred ccccccCCCCCHHHHHHHHHcCCCCccCCCc-eeeeccceeeeCCCCCCcccccccEEEecCCCCccccccCCc---ccc
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG---LGR 323 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~~~Ia~~pf-TT~~p~~g~v~~~~~~~~~~~~~~i~liDTPGii~~a~~~~~---lg~ 323 (454)
.|.++|.|++||||+.++|...-. +.+ .|...+.+.+.... .. . .....++|+.|.........- ...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~----~~~~~t~~~~~d~~r~~~-~g--~-~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN----FIGVPTREFNVGQYRRDM-VK--T-YKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHHHHHH-HC--S-CCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh----ccCCCceEEecchhhhhh-cc--C-CCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999975311 111 11111111110000 00 0 012345677765110000000 000
Q ss_pred hhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHh
Q 012884 324 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM 359 (454)
Q Consensus 324 ~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~ 359 (454)
.....+..+...++|+|++.. ..+..+.|.++++.
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 113344456788999999876 35555666666654
No 459
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=77.42 E-value=3.4 Score=38.50 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=44.8
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~ 380 (454)
.++|+||||.... ..+...+ ....||.+|+|++.+. ........+.+.+..+... .+.+ .-+|+|+.+...
T Consensus 117 D~iiiD~~~~~~~----~~~~~~~--~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~gvv~N~~~~~~ 188 (269)
T 1cp2_A 117 DYVFYDVLGDVVC----GGFAMPI--REGKAQEIYIVASGEM-MALYAANNISKGIQKYAKS-GGVRLGGIICNSRKVAN 188 (269)
T ss_dssp SEEEEEEECSSCS----TTTTHHH--HTTSCCEEEEEECSSH-HHHHHHHHHHHHHHHHBTT-BBCEEEEEEEECCSSSC
T ss_pred CEEEEeCCchhhh----hhhhhhh--hHhhCCEEEEeecCch-hhHHHHHHHHHHHHHHHhc-CCCcEEEEEeecCCcch
Confidence 6899999986421 1111110 1146999999998753 2233443444555543211 1334 468999998544
Q ss_pred hHHHHHHHHHH
Q 012884 381 ARDRLQSLTEE 391 (454)
Q Consensus 381 ~~e~~~~l~~~ 391 (454)
..+..+.+.+.
T Consensus 189 ~~~~~~~l~~~ 199 (269)
T 1cp2_A 189 EYELLDAFAKE 199 (269)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34444555443
No 460
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=77.23 E-value=0.6 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.300 Sum_probs=20.8
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+|++|..|||||||++.|++..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=77.15 E-value=1 Score=41.11 Aligned_cols=18 Identities=44% Similarity=0.458 Sum_probs=16.3
Q ss_pred ccccCCCCCHHHHHHHHH
Q 012884 250 TDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~ 267 (454)
.|+|..++|||||+.+|.
T Consensus 27 ~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 578999999999999984
No 462
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=77.08 E-value=4.2 Score=37.47 Aligned_cols=67 Identities=16% Similarity=0.073 Sum_probs=41.5
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCC----CCCCCCEEEEEeCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----DYLERPFIVVLNKID 377 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~----~~~~kp~IvV~NK~D 377 (454)
.++|+|||+-.. ..+...+..||.+|+|++.+. ........+.+.++.... ........+|+|++|
T Consensus 115 D~viiD~p~~~~---------~~~~~~l~~ad~vi~v~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~ 184 (260)
T 3q9l_A 115 EFIVCDSPAGIE---------TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYN 184 (260)
T ss_dssp SEEEEECCSSSS---------HHHHHHHHTCSEEEEEECSSH-HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEEC
T ss_pred CEEEEcCCCCCC---------HHHHHHHHhCCEEEEEecCCh-hHHHHHHHHHHHHHHhccccccccCCcceEEEEecCC
Confidence 689999998532 234556677999999999763 223334444444442210 001246789999998
Q ss_pred C
Q 012884 378 L 378 (454)
Q Consensus 378 l 378 (454)
.
T Consensus 185 ~ 185 (260)
T 3q9l_A 185 P 185 (260)
T ss_dssp H
T ss_pred c
Confidence 4
No 463
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=76.78 E-value=0.74 Score=39.76 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.7
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.+-+.|.||+|||+|+.++...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999998754
No 464
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=76.71 E-value=2.8 Score=40.00 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=25.1
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 343 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~ 343 (454)
.++|+|||+-.. ......+..||.+|+|+..+.
T Consensus 105 D~viiD~p~~~~---------~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 105 DFILIDTPGGDS---------AITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp SEEEEECCSSCC---------HHHHHHHHTCSEEEEEEESSH
T ss_pred CEEEEcCCCCcc---------HHHHHHHHHCCEEEEEEcCCc
Confidence 699999998642 234556677999999998753
No 465
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=76.65 E-value=0.95 Score=42.78 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
+.|++|.|+|||||+...|..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 568999999999999999865
No 466
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.56 E-value=0.99 Score=40.26 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.2
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
+.+.|.||+|||||+.++.+.
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999754
No 467
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=76.53 E-value=0.89 Score=45.31 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.9
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|.+++|||||+..|...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999865
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=76.09 E-value=1 Score=45.95 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.9
Q ss_pred cccccCCCCCHHHHHHHHHc
Q 012884 249 DTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~ 268 (454)
|.++|.|+|||||+.++|..
T Consensus 261 Iil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999999975
No 469
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=75.93 E-value=0.65 Score=50.34 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.8
Q ss_pred cccccCCCCCHHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~ 267 (454)
++|+|..|||||||++.+.
T Consensus 351 vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 351 VAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEECSTTSSHHHHHTTTH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 6899999999999998653
No 470
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=75.87 E-value=0.96 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.6
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.++|+|..|+|||||++.|.+.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999853
No 471
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.37 E-value=1 Score=43.87 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+.+.|.+|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999764
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.19 E-value=0.99 Score=47.38 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=16.5
Q ss_pred cccccCCCCCHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAI 266 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL 266 (454)
++++|.+|||||||++.|
T Consensus 42 ~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 578999999999999994
No 473
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=74.70 E-value=0.39 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.2
Q ss_pred ccccccCCCCCHHHHHHHHHc
Q 012884 248 DDTDKGLPNAGKSTLLAAITH 268 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~ 268 (454)
-++|+|..||||||||++|..
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998843
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.57 E-value=2.3 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.5
Q ss_pred cccccccCCCCCHHHHHHHHHcC
Q 012884 247 RDDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 247 adVglVG~pNaGKSTLlnaL~~~ 269 (454)
.-|-|.|.||+|||+|..++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34567899999999999999864
No 475
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.52 E-value=1.3 Score=40.83 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=18.0
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.++|.|+|||+|.-..|...
T Consensus 3 Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999753
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=74.37 E-value=0.77 Score=43.29 Aligned_cols=22 Identities=27% Similarity=0.287 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.+.|.++|||||+.+.|...
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4678899999999999999764
No 477
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=74.33 E-value=0.95 Score=52.94 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.7
Q ss_pred ccccccCCCCCHHHHHHHHHcCC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHAK 270 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~~ 270 (454)
.+|+||..|+|||||++.|.+.-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
No 478
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=74.30 E-value=1.3 Score=40.16 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|+++|.+++||||+.+.|...
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998753
No 479
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=74.15 E-value=5.3 Score=37.81 Aligned_cols=82 Identities=9% Similarity=0.066 Sum_probs=43.8
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPE 380 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp-~IvV~NK~Dl~~ 380 (454)
.++|+||||.... ..+... -....||.+|+|+..+. ........+.+.++.+... .+.+ .-+|+|+.+...
T Consensus 120 D~ViID~~~~~~~----~~~~~~--~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~gvv~N~~~~~~ 191 (289)
T 2afh_E 120 DFVFYDVLGDVVC----GGFAMP--IRENKAQEIYIVCSGEM-MAMYAANNISKGIVKYANS-GSVRLGGLICNSRNTDR 191 (289)
T ss_dssp SEEEEEEECSSCC----TTTTHH--HHTTCCCEEEEEECSSH-HHHHHHHHHHHHHHHHHTT-SCCEEEEEEEECCCCTT
T ss_pred CEEEEeCCCcccc----chhhhh--hhhhhCCEEEEEecCCH-HHHHHHHHHHHHHHHHHhc-CCCceEEEEEecCCchh
Confidence 6899999986421 111100 11246999999998753 2233333344445443211 1334 458899997543
Q ss_pred hHHHHHHHHHH
Q 012884 381 ARDRLQSLTEE 391 (454)
Q Consensus 381 ~~e~~~~l~~~ 391 (454)
..+..+.+.+.
T Consensus 192 ~~~~~~~l~~~ 202 (289)
T 2afh_E 192 EDELIIALANK 202 (289)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 480
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.09 E-value=1.3 Score=39.12 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.+.+.|.||+|||+|+.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999753
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.02 E-value=1 Score=52.73 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.+++||..|+|||||++.|.+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 5799999999999999999876
No 482
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.96 E-value=1.2 Score=42.32 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.|.|.||+|||||++++.+.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4567899999999999999864
No 483
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.77 E-value=1.3 Score=43.47 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+.+.|.||+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999764
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=73.60 E-value=1.2 Score=41.21 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.6
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.+.|.++|||||+++.|...
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 567899999999999999865
No 485
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=73.54 E-value=2.4 Score=41.35 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.0
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
+-+.|.+|+|||||+.++...
T Consensus 41 ~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999754
No 486
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.47 E-value=1.1 Score=43.69 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=27.8
Q ss_pred EEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 334 LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 334 vll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
--|+++|-.+.........+.+.++.+. .+..+|++.|..+..
T Consensus 135 ~~vlilDE~~~L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 135 YKCVIINEANSLTKDAQAALRRTMEKYS---KNIRLIMVCDSMSPI 177 (354)
T ss_dssp CEEEEEECTTSSCHHHHHHHHHHHHHST---TTEEEEEEESCSCSS
T ss_pred CeEEEEeCccccCHHHHHHHHHHHHhhc---CCCEEEEEeCCHHHH
Confidence 3477888655555555666777777653 346777888876654
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.34 E-value=1.4 Score=41.13 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|-|.|.||+|||+|.++|.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3668899999999999999764
No 488
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.29 E-value=1.2 Score=43.64 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.6
Q ss_pred cccccCCCCCHHHHHHHHH
Q 012884 249 DTDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~ 267 (454)
.+|+|..|+|||||+.+|.
T Consensus 27 ~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 27 TAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEECCTTTCSTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4789999999999999997
No 489
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=73.21 E-value=6.2 Score=38.12 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=41.4
Q ss_pred cEEEecCCCCccccccCCcccchhhcccccccEEEEEEeCCCCCCHhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 012884 302 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 379 (454)
Q Consensus 302 ~i~liDTPGii~~a~~~~~lg~~fl~~i~~advll~ViDas~~~~~~d~~~l~~eL~~~~~~~~~kp~IvV~NK~Dl~ 379 (454)
.++|+|||+....+ ...-....+|.+|+|+..... ...++....+.++... -...-+|+|++|..
T Consensus 215 D~VIIDtpp~~~~~--------d~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~~----~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 215 DLVIVDTPPMLAVS--------DAAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQAG----VNIKGAILNGVIKR 279 (299)
T ss_dssp SEEEEECCCTTTCT--------HHHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHTT----CCCCCEEEEECCCC
T ss_pred CEEEEcCCCCchhH--------HHHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhCC----CCeEEEEEeCCccC
Confidence 59999999975321 111223569999999998753 3455555556666532 12234789999864
No 490
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=72.67 E-value=1.5 Score=43.25 Aligned_cols=18 Identities=44% Similarity=0.458 Sum_probs=16.5
Q ss_pred ccccCCCCCHHHHHHHHH
Q 012884 250 TDKGLPNAGKSTLLAAIT 267 (454)
Q Consensus 250 glVG~pNaGKSTLlnaL~ 267 (454)
+++|..++|||||+.+|.
T Consensus 27 ~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 689999999999999984
No 491
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.65 E-value=1.5 Score=40.77 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|-++|.|+|||+|....|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988753
No 492
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=72.35 E-value=1.4 Score=42.51 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.4
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|.|.|.||+|||+|.++|.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 3678899999999999999865
No 493
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=72.28 E-value=1.4 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.0
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.|.|+|.|++||||+...|.+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999988653
No 494
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.13 E-value=1.5 Score=40.54 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.9
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-|-|.|.||+|||+|..+|.+.
T Consensus 41 ~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999764
No 495
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.03 E-value=1.5 Score=41.42 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.1
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+-|.|.||+|||+|++++.+.
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999999999764
No 496
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=71.77 E-value=1.3 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.3
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
.+|+||..|+|||||++.|.+-
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 497
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=71.33 E-value=1.5 Score=42.39 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=18.8
Q ss_pred ccccccCCCCCHHHHHHHHHcC
Q 012884 248 DDTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 248 dVglVG~pNaGKSTLlnaL~~~ 269 (454)
-+.+.|.||+|||||++++.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999999999764
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=71.25 E-value=1.4 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.9
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|.+++|||||+..|.+.
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999999865
No 499
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=71.25 E-value=1.3 Score=40.95 Aligned_cols=21 Identities=33% Similarity=0.215 Sum_probs=17.7
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
|.+-|.++|||||+++.|...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 457799999999999998643
No 500
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=70.97 E-value=1.6 Score=44.33 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.4
Q ss_pred cccccCCCCCHHHHHHHHHcC
Q 012884 249 DTDKGLPNAGKSTLLAAITHA 269 (454)
Q Consensus 249 VglVG~pNaGKSTLlnaL~~~ 269 (454)
++++|..|+|||||+++|...
T Consensus 29 ~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999653
Done!