BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012885
(454 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8C8W9|NS1_I67A2 Non-structural protein 1 (Fragment) OS=Influenza A virus (strain
A/Swine/Wisconsin/1/1967 H1N1) GN=NS PE=3 SV=1
Length = 219
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 69 GCFGFDTFFATDVRRFGDGGI----FIGNLRKPIEEVIPK-----LEKKLSEAAGRDVVV 119
F D F +RF D G+ F+ LR+ + + + L + + AG+ +V
Sbjct: 7 SSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLRGRGSTLGLNIETATLAGKQIVE 66
Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPW 155
W ++E++N+ K A P + L ++S W
Sbjct: 67 WILKEESNETLKMTIASVPSSRYLADMTLEEMSRDW 102
>sp|Q6BIC4|CGR1_DEBHA rRNA-processing protein CGR1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CGR1 PE=3 SV=1
Length = 132
Score = 35.0 bits (79), Expect = 1.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 11 KLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLR 68
KLE+++ T+L++L +E D R+ + R + EKER EK A ++++R
Sbjct: 63 KLEQQQYKTRLQDLKQEKEDAKNQRISDLKRRREIKAEKERYEKMALKMHAKKVDRMR 120
>sp|O92564|NS1_I61A1 Non-structural protein 1 OS=Influenza A virus (strain
A/Swine/Wisconsin/1/1961 H1N1) GN=NS PE=3 SV=1
Length = 230
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 62 LDLNKLRGCFGFDTFFATDVRRFGDGGI----FIGNLRKPIEEVIPK-----LEKKLSEA 112
+D N + F D F +RF D + F+ LR+ + + + L + +
Sbjct: 1 MDFNTV-SSFQVDCFLWHIRKRFADNELGDAPFLDRLRRDQKSLRGRGSTLGLNIETATL 59
Query: 113 AGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPW 155
AG+ +V W ++E++N+ K A P + L ++S W
Sbjct: 60 AGKQIVEWILKEESNEALKMTIASVPSSRYLADMTLEEMSRDW 102
>sp|Q8CJT1|RPOC_STRCO DNA-directed RNA polymerase subunit beta' OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=rpoC
PE=3 SV=1
Length = 1299
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 4 PSIEAAIKLEK---------------KRADTKLKELDRESTDNPIMRLFN-------RLV 41
PS+EA + +E+ K+ +T L EL+ E + R + +
Sbjct: 149 PSLEAHVSVERQQIEQRRDSDLEARAKKLETDLAELEAEGAKADVRRKVREGAEREMKQL 208
Query: 42 RDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVR-RFG---DGGIFIGNLRKP 97
RD RE +RL++ FK L + L G D ++R RFG DG + L+K
Sbjct: 209 RDRAQREIDRLDEVWNRFKNLKVQDLEG----DELLYRELRDRFGTYFDGSMGAAALQKR 264
Query: 98 IE 99
+E
Sbjct: 265 LE 266
>sp|Q82DQ4|RPOC_STRAW DNA-directed RNA polymerase subunit beta' OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=rpoC PE=3 SV=1
Length = 1299
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 4 PSIEAAIKLEK---------------KRADTKLKELDRESTDNPIMRLFN-------RLV 41
PS+EA + +E+ K+ +T L EL+ E + R + +
Sbjct: 149 PSLEAHVSVERQQIENRRDSDLEARAKKLETDLAELEAEGAKADVRRKVREGAEREMKQL 208
Query: 42 RDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVR-RFG---DGGIFIGNLRKP 97
RD RE +RL++ FK L + L G D ++R RFG DG + L+K
Sbjct: 209 RDRAQREIDRLDEVWTRFKNLKVQDLEG----DELLYRELRDRFGTYFDGSMGAAALQKR 264
Query: 98 IE 99
+E
Sbjct: 265 LE 266
>sp|Q56019|SIPB_SALTY Cell invasion protein SipB OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=sipB PE=1 SV=1
Length = 593
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 259 TASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVL 318
T A L A+ +A VAD FI+ NP++ ++V+ P + +G +
Sbjct: 336 TGGASLALAAVGLAVMVADEIVKAATGVSFIQQAL---NPIM---EHVLKPLMELIGKAI 389
Query: 319 PYAVEGVGVPCDPLAFAG 336
A+EG+GV AG
Sbjct: 390 TKALEGLGVDKKTAEMAG 407
>sp|Q79BT1|SIPB_SALDU Cell invasion protein SipB OS=Salmonella dublin GN=sipB PE=3 SV=1
Length = 593
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 259 TASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVL 318
T A L A+ +A VAD FI+ NP++ ++V+ P + +G +
Sbjct: 336 TGGASLALAAVGLAVMVADEIVKAATGVSFIQQAL---NPIM---EHVLKPLMELIGKAI 389
Query: 319 PYAVEGVGVPCDPLAFAG 336
A+EG+GV AG
Sbjct: 390 TKALEGLGVDKKTAEMAG 407
>sp|Q56134|SIPB_SALTI Cell invasion protein SipB OS=Salmonella typhi GN=sipB PE=1 SV=1
Length = 593
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 259 TASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVL 318
T A L A+ +A VAD FI+ NP++ ++V+ P + +G +
Sbjct: 336 TGGASLALAAVGLAVMVADEIVKAATGVSFIQQAL---NPIM---EHVLKPLMELIGKAI 389
Query: 319 PYAVEGVGVPCDPLAFAG 336
A+EG+GV AG
Sbjct: 390 TKALEGLGVDKKTAEMAG 407
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,787,520
Number of Sequences: 539616
Number of extensions: 7736113
Number of successful extensions: 18368
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 18358
Number of HSP's gapped (non-prelim): 24
length of query: 454
length of database: 191,569,459
effective HSP length: 121
effective length of query: 333
effective length of database: 126,275,923
effective search space: 42049882359
effective search space used: 42049882359
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)