Query 012889
Match_columns 454
No_of_seqs 266 out of 648
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 07:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07526 POX: Associated with 100.0 3E-48 6.4E-53 346.3 12.2 127 224-350 2-140 (140)
2 smart00574 POX domain associat 100.0 2.7E-48 5.8E-53 347.2 11.9 132 219-350 1-140 (140)
3 KOG0773 Transcription factor M 100.0 2.9E-35 6.3E-40 287.9 8.3 232 221-453 45-292 (342)
4 KOG0774 Transcription factor P 99.6 2.5E-14 5.4E-19 140.6 13.0 135 282-453 102-241 (334)
5 PF05920 Homeobox_KN: Homeobox 99.5 4.5E-15 9.7E-20 108.3 0.9 36 418-453 1-36 (40)
6 cd00086 homeodomain Homeodomai 99.1 1.4E-10 3.1E-15 85.8 3.9 49 402-453 2-50 (59)
7 KOG0775 Transcription factor S 99.0 3.3E-10 7E-15 112.3 3.6 44 407-453 183-226 (304)
8 smart00389 HOX Homeodomain. DN 99.0 5.6E-10 1.2E-14 82.5 3.9 48 403-453 3-50 (56)
9 PF00046 Homeobox: Homeobox do 98.8 2.9E-09 6.4E-14 79.6 2.7 50 401-453 1-50 (57)
10 TIGR01565 homeo_ZF_HD homeobox 97.8 3.9E-05 8.5E-10 60.7 5.6 50 401-453 2-55 (58)
11 KOG0773 Transcription factor M 97.2 8.7E-05 1.9E-09 73.8 -0.2 53 401-454 96-148 (342)
12 KOG0842 Transcription factor t 96.0 0.0071 1.5E-07 61.6 4.2 50 401-453 153-203 (307)
13 KOG0493 Transcription factor E 96.0 0.0053 1.2E-07 61.9 3.2 52 399-453 245-296 (342)
14 KOG0486 Transcription factor P 95.8 0.0064 1.4E-07 62.4 2.8 50 401-453 112-162 (351)
15 KOG2251 Homeobox transcription 95.7 0.012 2.7E-07 57.7 4.6 47 404-453 41-87 (228)
16 KOG0843 Transcription factor E 95.7 0.011 2.4E-07 56.8 3.8 51 400-453 102-152 (197)
17 PF11569 Homez: Homeodomain le 95.6 0.0039 8.5E-08 49.6 0.5 37 413-452 11-47 (56)
18 COG5576 Homeodomain-containing 95.5 0.018 4E-07 53.4 4.5 53 398-453 49-101 (156)
19 KOG0483 Transcription factor H 94.7 0.021 4.6E-07 55.0 2.6 52 399-453 49-100 (198)
20 KOG3802 Transcription factor O 94.4 0.05 1.1E-06 57.2 4.8 51 400-453 293-344 (398)
21 KOG0488 Transcription factor B 94.4 0.037 8E-07 56.2 3.6 44 407-453 179-222 (309)
22 KOG2252 CCAAT displacement pro 94.4 0.032 6.9E-07 60.6 3.3 52 399-453 419-470 (558)
23 KOG0487 Transcription factor A 94.3 0.043 9.3E-07 56.1 3.9 51 399-453 233-285 (308)
24 KOG0485 Transcription factor N 93.7 0.051 1.1E-06 53.9 3.0 50 401-453 105-154 (268)
25 KOG0489 Transcription factor z 93.7 0.029 6.3E-07 55.2 1.3 51 400-453 159-209 (261)
26 KOG0850 Transcription factor D 93.3 0.085 1.8E-06 52.4 3.8 45 406-453 128-172 (245)
27 KOG0492 Transcription factor M 91.5 0.24 5.1E-06 49.0 4.3 50 401-453 145-194 (246)
28 KOG0494 Transcription factor C 91.4 0.17 3.7E-06 51.4 3.3 44 407-453 148-191 (332)
29 KOG4577 Transcription factor L 90.9 0.19 4.1E-06 51.7 3.2 53 398-453 165-217 (383)
30 KOG0490 Transcription factor, 89.5 0.26 5.7E-06 45.4 2.6 51 401-454 61-111 (235)
31 KOG0491 Transcription factor B 89.5 0.087 1.9E-06 50.4 -0.5 44 407-453 107-150 (194)
32 KOG0849 Transcription factor P 87.7 0.37 8.1E-06 49.7 2.6 45 406-453 182-226 (354)
33 KOG0484 Transcription factor P 84.3 0.43 9.4E-06 43.0 0.9 46 405-453 22-67 (125)
34 PF11285 DUF3086: Protein of u 81.8 18 0.00038 37.2 11.1 124 282-421 6-154 (283)
35 KOG0848 Transcription factor C 74.1 1.2 2.6E-05 45.6 0.5 44 407-453 206-249 (317)
36 KOG1168 Transcription factor A 60.5 13 0.00028 38.8 4.6 50 401-453 310-359 (385)
37 KOG0490 Transcription factor, 60.3 6.8 0.00015 36.1 2.4 49 402-453 155-203 (235)
38 cd00569 HTH_Hin_like Helix-tur 53.2 19 0.00042 21.9 3.0 38 406-451 5-42 (42)
39 KOG0844 Transcription factor E 51.7 9.1 0.0002 40.2 1.9 49 402-453 183-231 (408)
40 PRK12849 groEL chaperonin GroE 51.0 64 0.0014 35.3 8.2 60 278-338 357-429 (542)
41 PRK12851 groEL chaperonin GroE 48.3 1E+02 0.0022 33.8 9.2 61 278-339 358-431 (541)
42 PF04218 CENP-B_N: CENP-B N-te 47.1 19 0.00042 27.6 2.6 43 402-453 2-45 (53)
43 PF03791 KNOX2: KNOX2 domain ; 45.7 37 0.00081 27.0 4.0 41 296-344 8-50 (52)
44 cd03344 GroEL GroEL_like type 45.2 92 0.002 33.8 8.3 82 279-362 356-454 (520)
45 PF14643 DUF4455: Domain of un 44.4 68 0.0015 34.4 7.1 36 283-318 407-442 (473)
46 TIGR02348 GroEL chaperonin Gro 43.5 1.2E+02 0.0027 32.8 9.0 58 278-336 356-426 (524)
47 KOG0847 Transcription factor, 43.2 15 0.00032 37.2 1.8 45 406-453 173-217 (288)
48 PRK00013 groEL chaperonin GroE 42.9 90 0.0019 34.2 7.8 59 278-337 357-428 (542)
49 PF12998 ING: Inhibitor of gro 41.7 2E+02 0.0043 23.7 10.6 74 285-358 13-87 (105)
50 PF13443 HTH_26: Cro/C1-type H 40.9 8.6 0.00019 29.0 -0.1 34 415-450 27-60 (63)
51 CHL00093 groEL chaperonin GroE 39.3 2.2E+02 0.0048 31.0 10.0 60 278-338 357-429 (529)
52 KOG0809 SNARE protein TLG2/Syn 36.3 1.2E+02 0.0026 31.8 7.1 58 297-354 107-169 (305)
53 PF14943 MRP-S26: Mitochondria 36.3 41 0.00089 32.0 3.6 23 297-319 27-49 (170)
54 PRK12852 groEL chaperonin GroE 32.7 2.3E+02 0.005 31.0 9.0 58 280-338 360-430 (545)
55 PTZ00114 Heat shock protein 60 31.2 2.7E+02 0.0058 30.6 9.2 59 279-338 371-442 (555)
56 PRK12850 groEL chaperonin GroE 31.0 1.8E+02 0.0039 31.9 7.8 57 280-337 360-429 (544)
57 PTZ00212 T-complex protein 1 s 29.5 1.4E+02 0.003 32.4 6.6 68 295-362 384-455 (533)
58 PRK11511 DNA-binding transcrip 28.9 52 0.0011 28.7 2.8 44 405-452 4-47 (127)
59 KOG3623 Homeobox transcription 28.3 44 0.00094 38.9 2.7 39 412-453 568-606 (1007)
60 TIGR02481 hemeryth_dom hemeryt 28.2 2.5E+02 0.0055 23.9 6.8 19 406-424 98-116 (126)
61 cd03342 TCP1_zeta TCP-1 (CTT o 27.7 1.4E+02 0.0031 31.9 6.3 68 295-362 341-412 (484)
62 PF13518 HTH_28: Helix-turn-he 27.0 16 0.00034 26.4 -0.7 21 433-453 15-35 (52)
63 cd07597 BAR_SNX8 The Bin/Amphi 26.8 3.4E+02 0.0075 26.7 8.3 77 284-360 33-119 (246)
64 cd03341 TCP1_theta TCP-1 (CTT 25.0 2E+02 0.0044 30.6 6.8 65 295-362 328-399 (472)
65 TIGR02342 chap_CCT_delta T-com 24.3 1.9E+02 0.0041 31.2 6.4 69 294-362 374-446 (517)
66 PF00406 ADK: Adenylate kinase 24.2 95 0.0021 27.1 3.6 26 294-319 123-148 (151)
67 PRK14104 chaperonin GroEL; Pro 23.7 4.8E+02 0.01 28.7 9.5 59 278-337 358-429 (546)
68 PF07765 KIP1: KIP1-like prote 23.2 1E+02 0.0022 26.3 3.3 30 279-308 41-71 (74)
69 KOG4040 NADH:ubiquinone oxidor 22.2 42 0.0009 32.5 1.0 36 409-444 23-59 (186)
70 PF10281 Ish1: Putative stress 22.0 1.7E+02 0.0036 21.0 3.8 25 411-436 5-30 (38)
71 PRK05687 fliH flagellar assemb 21.2 5.5E+02 0.012 24.9 8.4 67 283-360 106-172 (246)
72 TIGR02347 chap_CCT_zeta T-comp 20.1 2.5E+02 0.0055 30.6 6.4 65 295-362 384-455 (531)
No 1
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=100.00 E-value=3e-48 Score=346.26 Aligned_cols=127 Identities=56% Similarity=0.797 Sum_probs=100.3
Q ss_pred eccCCcccchHHHHHHHHhccCccccchhhh-hhhh---hh--ccC-CCCC---C--CCCCcccccCchhHHHHHHHHHH
Q 012889 224 QLRNSKYLAPAQEILKEFCSLGTKQNDATKL-KSNK---AK--QQW-DDEN---A--GSSSRKQSLCSLEFMELQKRKTK 291 (454)
Q Consensus 224 ~l~~SRYLkpAQeLLdE~~sv~~~~~~~~~~-~~~~---~~--~~~-~~~~---~--~~ss~~~~lss~er~elq~KKtK 291 (454)
+|++|||||||||||||||+|+++....... +... .. ... ..+. . ++...++++++++|+|+|+||+|
T Consensus 2 ~l~~SryLk~aQeLL~E~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~e~q~kK~K 81 (140)
T PF07526_consen 2 VLLGSRYLKPAQELLDEFCSVGGANKKKSDDSSSGAPGGANSSGSSSSSGGSSSSSSSSDSSSPELSPAERQELQRKKAK 81 (140)
T ss_pred ccccchhHHHHHHHHHHHHcccchhhhcchhhccccccccccCCCCCCCCCCCCCccccCCCCCCCChhhHHHHHHHHHH
Confidence 6999999999999999999999832110000 0000 00 000 0000 0 11223478999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHH
Q 012889 292 LLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVG 350 (454)
Q Consensus 292 LLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~ 350 (454)
||+||||||+||||||||||+||+|||+|||+|+|+|||+|||||||||||||||||++
T Consensus 82 Ll~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSrhFR~LRdaI~~ 140 (140)
T PF07526_consen 82 LLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSRHFRCLRDAISD 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999963
No 2
>smart00574 POX domain associated with HOX domains.
Probab=100.00 E-value=2.7e-48 Score=347.16 Aligned_cols=132 Identities=54% Similarity=0.825 Sum_probs=108.2
Q ss_pred cccceeccCCcccchHHHHHHHHhccCccccchhhhhh---h--hh--hccCCCCCCC-CCCcccccCchhHHHHHHHHH
Q 012889 219 TGHQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKS---N--KA--KQQWDDENAG-SSSRKQSLCSLEFMELQKRKT 290 (454)
Q Consensus 219 tgyA~~l~~SRYLkpAQeLLdE~~sv~~~~~~~~~~~~---~--~~--~~~~~~~~~~-~ss~~~~lss~er~elq~KKt 290 (454)
+||+++|++|||||||||||||||+|+++.......+. . .. ...+++..++ +.+..++++++||+|+|+||+
T Consensus 1 ~g~~~~l~~SkyLk~aQeLLdEf~sv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ls~~~r~e~q~kk~ 80 (140)
T smart00574 1 TGGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSPVSTSSNEGGGENLSGGSSSSEVPPLSTAERQELQRKKA 80 (140)
T ss_pred CchhhhccCccccccHHHHHHHHhcccHHhhcccccccccccccccccCCCcCCCCCCCCCCCCCCCchhHHHHHHHHHH
Confidence 58999999999999999999999999876543221110 0 00 0111211121 223458999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHH
Q 012889 291 KLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVG 350 (454)
Q Consensus 291 KLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~ 350 (454)
|||+||||||+||||||||||+||++||+|||+|+|+|||+|||||||||||||||||++
T Consensus 81 kLl~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~SrhFr~LrdaI~g 140 (140)
T smart00574 81 KLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIAG 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999963
No 3
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=100.00 E-value=2.9e-35 Score=287.93 Aligned_cols=232 Identities=36% Similarity=0.473 Sum_probs=185.1
Q ss_pred cceeccCCcccchHHHHHHHHhccCccccchhhhhhh-h----hhccCCC-----CCCCCCCcccccCchhHHHHHHHHH
Q 012889 221 HQFQLRNSKYLAPAQEILKEFCSLGTKQNDATKLKSN-K----AKQQWDD-----ENAGSSSRKQSLCSLEFMELQKRKT 290 (454)
Q Consensus 221 yA~~l~~SRYLkpAQeLLdE~~sv~~~~~~~~~~~~~-~----~~~~~~~-----~~~~~ss~~~~lss~er~elq~KKt 290 (454)
+.+.+..++||++||+||+++|+++............ . ......+ ++.+..+ +...+..++++++.+++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s-~~~~~~~~~~~~~~~~~ 123 (342)
T KOG0773|consen 45 IMVSLASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRES-ATLKAWLEEHRLNPYPS 123 (342)
T ss_pred cccccccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccc-cccccchhhhhhccCch
Confidence 3567889999999999999999998644221100000 0 0000000 0011111 33456789999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHhCCCCCCCCC
Q 012889 291 KLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRD--GIVGQIQATKKAMGEKDPVAPG 368 (454)
Q Consensus 291 KLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~Lrd--aI~~QI~~~~~~lge~d~~~~g 368 (454)
|++.||.+|+.||.+|+..|+.|.++|+...|++.+.+|+..++.++++||+|+++ +|.+|+......+|+.+.....
T Consensus 124 k~~~~ll~~~~~~~~~~~~~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 203 (342)
T KOG0773|consen 124 KLEKILLAVITKLTLTQVSTWFANARRRLKKELKMTWGPTPLALDGISRHFSDLEKEKAIGGQLSSSEELLGESEQDDSE 203 (342)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccCCCCCCccccccchhhhhhhhhhcccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999888765432211
Q ss_pred ---CCCCCCCchhhhhHHHHHhh-hhhhcccccCCCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCc
Q 012889 369 ---TSRGETPRLKIIDQTLRQQR-AFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSR 444 (454)
Q Consensus 369 ---~~~Ge~~rlr~~d~~lrQqr-a~qqlg~~~~~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~ 444 (454)
...+..++.+..++.+++++ ++++.+..+...|||+++||++++.+||+||++|+.||||++++|.+|+++|||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~ 283 (342)
T KOG0773|consen 204 DESGPSGSEPPLRLAKQSLRQQRSAYDGSGGKKQSKWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSR 283 (342)
T ss_pred cccCcccccCCcccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCc
Confidence 12223667778888888775 45566667778999999999999999999999999999999999999999999999
Q ss_pred ccccccccC
Q 012889 445 SQVCPTIYV 453 (454)
Q Consensus 445 sQVsNWFiN 453 (454)
.||+|||||
T Consensus 284 ~Qv~NWFIN 292 (342)
T KOG0773|consen 284 PQVSNWFIN 292 (342)
T ss_pred ccCCchhhh
Confidence 999999998
No 4
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=99.57 E-value=2.5e-14 Score=140.64 Aligned_cols=135 Identities=19% Similarity=0.333 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhh----HHHHHHHHHHHhhhHHHHHHHHHHH-HH
Q 012889 282 FMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVY----SALASKAMSRHFRCLRDGIVGQIQA-TK 356 (454)
Q Consensus 282 r~elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~Y----talAlramSrhFr~LrdaI~~QI~~-~~ 356 (454)
.-+...|-.++-..+.+--+.|+|-|.+.-.-|...-.--+. ..|- +.-..+.||+.|.. |.-||+. |+
T Consensus 102 hsdYR~kL~qiR~iy~~ElekyeqaCneftthV~nlL~eQsr--~RPi~~ke~e~m~~~i~~kF~~----iq~~lkqstc 175 (334)
T KOG0774|consen 102 HSDYRAKLLQIRQIYHNELEKYEQACNEFTTHVMNLLREQSR--TRPIMPKEIERMVQIISKKFSH----IQMQLKQSTC 175 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 344555555555555555567888777766554443322221 2222 23456677777754 4445542 22
Q ss_pred HHhCCCCCCCCCCCCCCCCchhhhhHHHHHhhhhhhcccccCCCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 012889 357 KAMGEKDPVAPGTSRGETPRLKIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHIL 436 (454)
Q Consensus 357 ~~lge~d~~~~g~~~Ge~~rlr~~d~~lrQqra~qqlg~~~~~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~L 436 (454)
.++= .=|-|++ ..+|+||+|+|.++.||..||+.|+.||||++++|++|
T Consensus 176 e~vm-------------iLr~r~l------------------darRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eL 224 (334)
T KOG0774|consen 176 EAVM-------------ILRSRFL------------------DARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEEL 224 (334)
T ss_pred HHHH-------------HHHHHHH------------------HHHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 1100 0011111 34688999999999999999999999999999999999
Q ss_pred HHHhCCCcccccccccC
Q 012889 437 ARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 437 A~qTGLS~sQVsNWFiN 453 (454)
|+++|++++||+|||.|
T Consensus 225 AkqCnItvsQvsnwfgn 241 (334)
T KOG0774|consen 225 AKQCNITVSQVSNWFGN 241 (334)
T ss_pred HHHcCceehhhcccccc
Confidence 99999999999999987
No 5
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=99.49 E-value=4.5e-15 Score=108.34 Aligned_cols=36 Identities=50% Similarity=0.833 Sum_probs=32.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 418 WLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 418 WL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
||.+|+.||||+++||.+||++||||+.||+|||+|
T Consensus 1 Wl~~h~~nPYPs~~ek~~L~~~tgls~~Qi~~WF~N 36 (40)
T PF05920_consen 1 WLLEHLHNPYPSKEEKEELAKQTGLSRKQISNWFIN 36 (40)
T ss_dssp HHHHTTTSGS--HHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred CHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999998
No 6
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.05 E-value=1.4e-10 Score=85.82 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=45.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+++..++++.+.+|++||.. +|||+.+++..||.++||+..||.|||.|
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~---~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEK---NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 44567999999999999998 69999999999999999999999999986
No 7
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.96 E-value=3.3e-10 Score=112.26 Aligned_cols=44 Identities=41% Similarity=0.643 Sum_probs=42.1
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 407 LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|.+.++.+||+||.. +|||+.+||++||+.||||..||+|||.|
T Consensus 183 FKekSR~~LrewY~~---~~YPsp~eKReLA~aTgLt~tQVsNWFKN 226 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQ---NPYPSPREKRELAEATGLTITQVSNWFKN 226 (304)
T ss_pred hhHhhHHHHHHHHhc---CCCCChHHHHHHHHHhCCchhhhhhhhhh
Confidence 788999999999995 69999999999999999999999999998
No 8
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=98.96 E-value=5.6e-10 Score=82.46 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 403 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 403 prRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++..++++.+.+|++||..+ |||+.+++..||..+||+..||.|||.|
T Consensus 3 ~r~~~~~~~~~~L~~~f~~~---~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 3 KRTSFTPEQLEELEKEFQKN---PYPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred CCCcCCHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 34459999999999999975 8999999999999999999999999987
No 9
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=98.79 E-value=2.9e-09 Score=79.64 Aligned_cols=50 Identities=28% Similarity=0.451 Sum_probs=46.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+++.+.+|..+|.. +|||+.+++..||.++||+..||.+||-|
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~WF~n 50 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQE---NPYPSKEEREELAKELGLTERQVKNWFQN 50 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHH---SSSCHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHH---hccccccccccccccccccccccccCHHH
Confidence 356777999999999999997 69999999999999999999999999976
No 10
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=97.82 E-value=3.9e-05 Score=60.67 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=45.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPY----PSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPY----PSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|+|..|+.+.+..|+.-|... +| |+..+...||..+||+..+|..||-|
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~---~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN 55 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKL---GWKLKDKRREEVREFCEEIGVTRKVFKVWMHN 55 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHc---CCCCCCCCHHHHHHHHHHhCCCHHHeeeeccc
Confidence 4556669999999999988875 99 99999999999999999999999987
No 11
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=97.17 E-value=8.7e-05 Score=73.79 Aligned_cols=53 Identities=36% Similarity=0.461 Sum_probs=48.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccCC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYVF 454 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiNf 454 (454)
..++.+++.++ .+|+.|+.+|..+|||++-+|.+|+..|.++..||++||+|+
T Consensus 96 ~~~~~n~~~~s-~~~~~~~~~~~~~~~~~k~~~~ll~~~~~~~~~~~~~~~~~a 148 (342)
T KOG0773|consen 96 GARRGNATRES-ATLKAWLEEHRLNPYPSKLEKILLAVITKLTLTQVSTWFANA 148 (342)
T ss_pred ccccccccccc-cccccchhhhhhccCchHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44455699999 999999999999999999999999999999999999999973
No 12
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=95.99 E-value=0.0071 Score=61.61 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCCCCC-CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRG-LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRg-LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++|- |++..|-.|..=|.+. -|-+--|++.||....||.+||.-||-|
T Consensus 153 kRKrRVLFSqAQV~ELERRFrqQ---RYLSAPERE~LA~~LrLT~TQVKIWFQN 203 (307)
T KOG0842|consen 153 KRKRRVLFSQAQVYELERRFRQQ---RYLSAPEREHLASSLRLTPTQVKIWFQN 203 (307)
T ss_pred ccccccccchhHHHHHHHHHHhh---hccccHhHHHHHHhcCCCchheeeeeec
Confidence 344443 9999999998888875 8999999999999999999999999987
No 13
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=95.98 E-value=0.0053 Score=61.92 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=48.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+|||..|+-+...-||.=|.++ -|-|+.-++.||.+.||...||.-||-|
T Consensus 245 eeKRPRTAFtaeQL~RLK~EF~en---RYlTEqRRQ~La~ELgLNEsQIKIWFQN 296 (342)
T KOG0493|consen 245 EEKRPRTAFTAEQLQRLKAEFQEN---RYLTEQRRQELAQELGLNESQIKIWFQN 296 (342)
T ss_pred hhcCccccccHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhCcCHHHhhHHhhh
Confidence 457888889999999999999886 8999999999999999999999999987
No 14
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=95.77 E-value=0.0064 Score=62.41 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=45.3
Q ss_pred CCCCCC-CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRG-LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRg-LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.|++|. |+-.....|+.||.. +-||+.+.++++|.=|+||...|.+||.|
T Consensus 112 qrrQrthFtSqqlqele~tF~r---NrypdMstrEEIavwtNlTE~rvrvwfkn 162 (351)
T KOG0486|consen 112 QRRQRTHFTSQQLQELEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKN 162 (351)
T ss_pred hhhhhhhhHHHHHHHHHHHHhh---ccCCccchhhHHHhhccccchhhhhhccc
Confidence 344555 999999999999998 59999999999999999999999999987
No 15
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=95.74 E-value=0.012 Score=57.72 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=43.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 404 rRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|..|+.....+|++=|.+. -||+...+++||.+.+|...+|.+||.|
T Consensus 41 RTtFtr~QlevLe~LF~kT---qYPDv~~rEelAlklnLpeSrVqVWFKN 87 (228)
T KOG2251|consen 41 RTTFTRKQLEVLEALFAKT---QYPDVFMREELALKLNLPESRVQVWFKN 87 (228)
T ss_pred cceecHHHHHHHHHHHHhh---cCccHHHHHHHHHHhCCchhhhhhhhcc
Confidence 3349999999999998886 8999999999999999999999999998
No 16
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=95.66 E-value=0.011 Score=56.80 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++|.|..|+.+.+-.|..-|..+ -|-.-.|++.||+..+||.+||.-||-|
T Consensus 102 ~kr~RT~ft~~Ql~~LE~~F~~~---~Yvvg~eR~~LA~~L~LsetQVkvWFQN 152 (197)
T KOG0843|consen 102 PKRIRTAFTPEQLLKLEHAFEGN---QYVVGAERKQLAQSLSLSETQVKVWFQN 152 (197)
T ss_pred CCccccccCHHHHHHHHHHHhcC---CeeechHHHHHHHHcCCChhHhhhhhhh
Confidence 34444459999999999988874 8999999999999999999999999987
No 17
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=95.61 E-value=0.0039 Score=49.57 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccccc
Q 012889 413 SVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY 452 (454)
Q Consensus 413 ~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFi 452 (454)
+.|++.|..| .+..+.+...|+.+|+||-.||.+||+
T Consensus 11 ~pL~~Yy~~h---~~L~E~DL~~L~~kS~ms~qqVr~WFa 47 (56)
T PF11569_consen 11 QPLEDYYLKH---KQLQEEDLDELCDKSRMSYQQVRDWFA 47 (56)
T ss_dssp HHHHHHHHHT-------TTHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHc---CCccHhhHHHHHHHHCCCHHHHHHHHH
Confidence 3499988876 889999999999999999999999996
No 18
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=95.48 E-value=0.018 Score=53.40 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=47.7
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 398 SHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 398 ~~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+++++++.+...+.+|+.-|.. +|||+..+|..|+...+++..=|.-||=|
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i---~p~Ps~~~r~~L~~~lnm~~ksVqIWFQN 101 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEI---NPYPSSITRIKLSLLLNMPPKSVQIWFQN 101 (156)
T ss_pred CcCcccceechHHHHHHHHHHhcc---CCCCCHHHHHHHHHhcCCChhhhhhhhch
Confidence 356667778999999999998886 59999999999999999999999999976
No 19
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=94.72 E-value=0.021 Score=54.97 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=45.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+++|++|+.+.+..|..=|..| -|-....|..||++.||...||.-||-|
T Consensus 49 ~~~~kk~Rlt~eQ~~~LE~~F~~~---~~L~p~~K~~LAk~LgL~pRQVavWFQN 100 (198)
T KOG0483|consen 49 KGKGKKRRLTSEQVKFLEKSFESE---KKLEPERKKKLAKELGLQPRQVAVWFQN 100 (198)
T ss_pred ccccccccccHHHHHHhHHhhccc---cccChHHHHHHHHhhCCChhHHHHHHhh
Confidence 367889999999999999888865 5566689999999999999999999977
No 20
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=94.43 E-value=0.05 Score=57.25 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=45.5
Q ss_pred CCCCCCC-CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRG-LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRg-LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|+||. +...++..|..-|.+ +|-|+-+|.-.||++.+|.+.-|.-||-|
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~---npKPt~qEIt~iA~~L~leKEVVRVWFCN 344 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLK---NPKPTSQEITHIAESLQLEKEVVRVWFCN 344 (398)
T ss_pred cccccccceeHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhccccceEEEEeec
Confidence 4555665 999999999988887 59999999999999999999999999987
No 21
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=94.38 E-value=0.037 Score=56.17 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=39.7
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 407 LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|+...+.-|..=|..- -|-+..|+..||...|||-.||..||-|
T Consensus 179 FT~~Ql~~LEkrF~~Q---KYLS~~DR~~LA~~LgLTdaQVKtWfQN 222 (309)
T KOG0488|consen 179 FSDHQLFELEKRFEKQ---KYLSVADRIELAASLGLTDAQVKTWFQN 222 (309)
T ss_pred hhHHHHHHHHHHHHHh---hcccHHHHHHHHHHcCCchhhHHHHHhh
Confidence 9999999996666543 7999999999999999999999999987
No 22
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=94.36 E-value=0.032 Score=60.65 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+|||--|+...++.|++-|.+. |||+.+.-+.|+.+.+|.+.=|.|||-|
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~---~RPS~Emq~tIS~qL~L~~sTV~NfFmN 470 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKEN---KRPSREMQETISQQLNLELSTVINFFMN 470 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCcHHHHHHHHHh
Confidence 356665569999999999999985 9999999999999999999999999988
No 23
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=94.30 E-value=0.043 Score=56.10 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=43.5
Q ss_pred CCCCCCCC-CChhHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRG-LPERSVSVLR-AWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRg-LPKeAv~ILR-aWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
...|+||- .+|..+..|. +.|+ |=|-|.+-+.+|++.++||..||.-||-|
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlf----N~YitkeKR~ElSr~lNLTeRQVKIWFQN 285 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLF----NMYITKEKRLELSRTLNLTERQVKIWFQN 285 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHH----HHHHhHHHHHHHHHhcccchhheeeeehh
Confidence 45677775 8999999995 4444 47999999999999999999999999987
No 24
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=93.73 E-value=0.051 Score=53.88 Aligned_cols=50 Identities=18% Similarity=0.066 Sum_probs=44.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+++|.-|+...+..|..-|... -|-+..|+.-||++..||.+||.-||-|
T Consensus 105 KktRTvFSraQV~qLEs~Fe~k---rYLSsaeRa~LA~sLqLTETQVKIWFQN 154 (268)
T KOG0485|consen 105 KKTRTVFSRAQVFQLESTFELK---RYLSSAERAGLAASLQLTETQVKIWFQN 154 (268)
T ss_pred ccchhhhhHHHHHHHHHHHHHH---hhhhHHHHhHHHHhhhhhhhhhhhhhhh
Confidence 3444459999999999888865 8999999999999999999999999987
No 25
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=93.65 E-value=0.029 Score=55.18 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=44.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|.|..|+...+..|+.=|. .|.|-+...+.+||....||..||..||-|
T Consensus 159 ~kR~RtayT~~QllELEkEFh---fN~YLtR~RRiEiA~~L~LtErQIKIWFQN 209 (261)
T KOG0489|consen 159 SKRRRTAFTRYQLLELEKEFH---FNKYLTRSRRIEIAHALNLTERQIKIWFQN 209 (261)
T ss_pred CCCCCcccchhhhhhhhhhhc---cccccchHHHHHHHhhcchhHHHHHHHHHH
Confidence 455555699999999986554 469999999999999999999999999987
No 26
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=93.30 E-value=0.085 Score=52.41 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
-++.-....|+.=|.+- -|----|+.+||...|||.+||.-||-|
T Consensus 128 IYSS~QLqaL~rRFQkT---QYLALPERAeLAAsLGLTQTQVKIWFQN 172 (245)
T KOG0850|consen 128 IYSSLQLQALNRRFQQT---QYLALPERAELAASLGLTQTQVKIWFQN 172 (245)
T ss_pred cccHHHHHHHHHHHhhc---chhcCcHHHHHHHHhCCchhHhhhhhhh
Confidence 38999999998877764 6777779999999999999999999987
No 27
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=91.53 E-value=0.24 Score=49.02 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=44.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++||.-|+....-.|..=|.+. -|-+.+|+.+++....||.+||.-||-|
T Consensus 145 RkPRtPFTtqQLlaLErkfrek---qYLSiaEraefSsSL~LTeTqVKIWFQN 194 (246)
T KOG0492|consen 145 RKPRTPFTTQQLLALERKFREK---QYLSIAERAEFSSSLELTETQVKIWFQN 194 (246)
T ss_pred CCCCCCCCHHHHHHHHHHHhHh---hhhhHHHHHhhhhhhhhhhhheehhhhh
Confidence 3445559999999998888875 8999999999999999999999999987
No 28
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=91.41 E-value=0.17 Score=51.40 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=41.7
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 407 LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|+......|..-|.|- =||....|++||.+|+|....|.-||-|
T Consensus 148 FT~~Qle~LEkaFkea---HYPDv~Are~la~ktelpEDRIqVWfQN 191 (332)
T KOG0494|consen 148 FTSYQLEELEKAFKEA---HYPDVYAREMLADKTELPEDRIQVWFQN 191 (332)
T ss_pred hhHHHHHHHHHHHhhc---cCccHHHHHHHhhhccCchhhhhHHhhh
Confidence 9999999999999985 6999999999999999999999999987
No 29
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=90.93 E-value=0.19 Score=51.70 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 398 SHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 398 ~~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
...+|||..++....+.||.-+.. .|-|-.--+++|+..|||...-|.-||-|
T Consensus 165 ~~nKRPRTTItAKqLETLK~AYn~---SpKPARHVREQLsseTGLDMRVVQVWFQN 217 (383)
T KOG4577|consen 165 ASNKRPRTTITAKQLETLKQAYNT---SPKPARHVREQLSSETGLDMRVVQVWFQN 217 (383)
T ss_pred cccCCCcceeeHHHHHHHHHHhcC---CCchhHHHHHHhhhccCcceeehhhhhhh
Confidence 457899999999999999988775 59999999999999999999999999987
No 30
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=89.52 E-value=0.26 Score=45.37 Aligned_cols=51 Identities=10% Similarity=-0.141 Sum_probs=44.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccCC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYVF 454 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiNf 454 (454)
+|.+..|+..++.+|..=|... +||...-++.||..++++...|..||-|.
T Consensus 61 rr~rt~~~~~ql~~ler~f~~~---h~Pd~~~r~~la~~~~~~e~rVqvwFqnr 111 (235)
T KOG0490|consen 61 RCARCKFTISQLDELERAFEKV---HLPCFACRECLALLLTGDEFRVQVWFQNR 111 (235)
T ss_pred cccCCCCCcCHHHHHHHhhcCC---CcCccchHHHHhhcCCCCeeeeehhhhhh
Confidence 3444458889999998887775 99999999999999999999999999874
No 31
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=89.51 E-value=0.087 Score=50.42 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 407 LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|+......|..=|..- -|-+-.|+++||...+|+.+||..||-|
T Consensus 107 fs~~ql~~l~~rFe~Q---rYLS~~e~~ELan~L~LS~~QVKTWFQN 150 (194)
T KOG0491|consen 107 FSDPQLSGLEKRFERQ---RYLSTPERQELANALSLSETQVKTWFQN 150 (194)
T ss_pred ccCccccccHHHHhhh---hhcccHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7777777787766643 6888889999999999999999999977
No 32
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=87.68 E-value=0.37 Score=49.69 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=42.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.|+......|..||... |||....++.||+++||+...|.-||-|
T Consensus 182 sft~~Q~~~le~~f~rt---~yP~i~~Re~La~~i~l~e~riqvwf~n 226 (354)
T KOG0849|consen 182 SFSPSQLEALEECFQRT---PYPDIVGRETLAKETGLPEPRVQVWFQN 226 (354)
T ss_pred ccccchHHHHHHHhcCC---CCCchhhHHHHhhhccCCchHHHHHHhh
Confidence 49999999999999875 6999999999999999999999999987
No 33
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=84.34 E-value=0.43 Score=42.97 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 405 RgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..|+......|..-|.|. -||..-.+++||.+..||...|.-||-|
T Consensus 22 TTFTS~QLkELErvF~ET---HYPDIYTREEiA~kidLTEARVQVWFQN 67 (125)
T KOG0484|consen 22 TTFTSAQLKELERVFAET---HYPDIYTREEIALKIDLTEARVQVWFQN 67 (125)
T ss_pred hhhhHHHHHHHHHHHHhh---cCCcchhHHHHHHhhhhhHHHHHHHHHh
Confidence 349999999998888875 6999999999999999999999999987
No 34
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=81.83 E-value=18 Score=37.17 Aligned_cols=124 Identities=22% Similarity=0.450 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Q 012889 282 FMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMGE 361 (454)
Q Consensus 282 r~elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~QI~~~~~~lge 361 (454)
..+|+.+|..|..=++++++|-++-..+|.. +|- |.+ +.|.+..+-.||-+++-|+-...+.-.
T Consensus 6 L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrt---sFa-----G~S--------q~lA~RVqGFkdYLvGsLQDLa~saEq 69 (283)
T PF11285_consen 6 LKELEQRKQALQIEIEQLERRRERIEKEMRT---SFA-----GQS--------QDLAIRVQGFKDYLVGSLQDLAQSAEQ 69 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccc-----cch--------HHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999998 775 322 466677788888888888743332110
Q ss_pred -----CCC----------C-CCCCCC-CCCCchhhhhHHHHH-----hhhhhhccccc---CCCCCCCCCCChhHHHHHH
Q 012889 362 -----KDP----------V-APGTSR-GETPRLKIIDQTLRQ-----QRAFQQMSMME---SHPWRPQRGLPERSVSVLR 416 (454)
Q Consensus 362 -----~d~----------~-~~g~~~-Ge~~rlr~~d~~lrQ-----qra~qqlg~~~---~~~~RprRgLPKeAv~ILR 416 (454)
... . .+.... ...+...+..+.++. .+.+.|+...- ..+|.=||.|-..-...+.
T Consensus 70 LeLv~~~~~~~psp~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~Ir~~l~qyr~~PDyYg~PWqLRRtfe~~hae~v~ 149 (283)
T PF11285_consen 70 LELVPQPVVVQPSPLDEPAPPPQANAAKNPPTPQFAAQTFQPDERQIRRLLDQYRTQPDYYGPPWQLRRTFEPIHAERVE 149 (283)
T ss_pred hccCCCCcCCCCCcccccccCcccccccCCCCCcchhhhcchHHHHHHHHHHHHhhCCCccCChHHHHhcccHHHHHHHH
Confidence 000 0 000000 001111222222211 11223322211 2578889999999999999
Q ss_pred HHHHH
Q 012889 417 AWLFE 421 (454)
Q Consensus 417 aWL~e 421 (454)
+||+.
T Consensus 150 ~WFF~ 154 (283)
T PF11285_consen 150 DWFFN 154 (283)
T ss_pred HHHhc
Confidence 99995
No 35
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=74.13 E-value=1.2 Score=45.60 Aligned_cols=44 Identities=23% Similarity=0.074 Sum_probs=37.2
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 407 LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+...+-.|+.=| ...+|=|..-|.+||.-.|||..||.-||-|
T Consensus 206 YTDhQRLELEKEf---h~SryITirRKSELA~~LgLsERQVKIWFQN 249 (317)
T KOG0848|consen 206 YTDHQRLELEKEF---HTSRYITIRRKSELAATLGLSERQVKIWFQN 249 (317)
T ss_pred ecchhhhhhhhhh---ccccceeeehhHHHHHhhCccHhhhhHhhhh
Confidence 6777776776534 3569999999999999999999999999987
No 36
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=60.55 E-value=13 Score=38.84 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|+|..+-..-++.|.++|..- |-|+.+-...+|++..|.+.-|.-||-|
T Consensus 310 KRKRTSIAAPEKRsLEayFavQ---PRPS~EkIAaIAekLDLKKNVVRVWFCN 359 (385)
T KOG1168|consen 310 KRKRTSIAAPEKRSLEAYFAVQ---PRPSGEKIAAIAEKLDLKKNVVRVWFCN 359 (385)
T ss_pred ccccccccCcccccHHHHhccC---CCCchhHHHHHHHhhhhhhceEEEEeec
Confidence 3444445444456799999864 9999999999999999999999999987
No 37
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=60.32 E-value=6.8 Score=36.13 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=38.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+++..+......++.. .....|||.......|+..+|++..-|..||-|
T Consensus 155 ~~~~~~~~~~~~~~~~---~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~ 203 (235)
T KOG0490|consen 155 RPRTTFTENQLEVLET---VFRATPKPDADDREQLAEETGLSERVIQVWFQN 203 (235)
T ss_pred CCccccccchhHhhhh---cccCCCCCchhhHHHHHHhcCCChhhhhhhccc
Confidence 3344566666665554 444579999999999999999999999999987
No 38
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=53.23 E-value=19 Score=21.85 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccc
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTI 451 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWF 451 (454)
.++.+....+..++.+ .+ ....+|+..|++...|.+|.
T Consensus 5 ~~~~~~~~~i~~~~~~----~~----s~~~ia~~~~is~~tv~~~~ 42 (42)
T cd00569 5 KLTPEQIEEARRLLAA----GE----SVAEIARRLGVSRSTLYRYL 42 (42)
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHhC
Confidence 3555555555554432 33 45688999999999999984
No 39
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=51.74 E-value=9.1 Score=40.19 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|-|..|+++...-|..=|+.. -|-+.-.+.+||...+|..+-|.-||-|
T Consensus 183 RYRTAFTReQIaRLEKEFyrE---NYVSRprRcELAAaLNLPEtTIKVWFQN 231 (408)
T KOG0844|consen 183 RYRTAFTREQIARLEKEFYRE---NYVSRPRRCELAAALNLPETTIKVWFQN 231 (408)
T ss_pred HHHhhhhHHHHHHHHHHHHHh---ccccCchhhhHHHhhCCCcceeehhhhh
Confidence 334458999888885555533 5788889999999999999999999987
No 40
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=51.01 E-value=64 Score=35.28 Aligned_cols=60 Identities=27% Similarity=0.275 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMS 338 (454)
Q Consensus 278 ss~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramS 338 (454)
+..+++.|+.+.++|. .+|+|++|+++--..-++..+... .|+|.|++-.+.+.+|+..+
T Consensus 357 ~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~ 429 (542)
T PRK12849 357 SDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA 429 (542)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh
Confidence 3456777777877775 368999999888888888888884 89999999888887777554
No 41
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=48.31 E-value=1e+02 Score=33.78 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=44.4
Q ss_pred CchhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSR 339 (454)
Q Consensus 278 ss~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSr 339 (454)
++.++..|+.|.++|- ..++|++|+++--..-++..+..- .|.|.|++-.+.+.+|+.++.
T Consensus 358 ~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~ 431 (541)
T PRK12851 358 SDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLET 431 (541)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhc
Confidence 4456777777766653 256788877777777777777673 899999998888888876553
No 42
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=47.11 E-value=19 Score=27.62 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=25.5
Q ss_pred CCCCCCChhH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERS-VSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeA-v~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|+++.|+-+- ..|++. +.+ .| -+..||+..|++.++|++|..|
T Consensus 2 rkR~~LTl~eK~~iI~~-~e~---g~-----s~~~ia~~fgv~~sTv~~I~K~ 45 (53)
T PF04218_consen 2 RKRKSLTLEEKLEIIKR-LEE---GE-----SKRDIAREFGVSRSTVSTILKN 45 (53)
T ss_dssp SSSSS--HHHHHHHHHH-HHC---TT------HHHHHHHHT--CCHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHH-HHc---CC-----CHHHHHHHhCCCHHHHHHHHHh
Confidence 4555565444 344433 333 33 5789999999999999999765
No 43
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=45.66 E-value=37 Score=26.96 Aligned_cols=41 Identities=17% Similarity=0.388 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhH--HHHHHHHHHHhhhH
Q 012889 296 LEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYS--ALASKAMSRHFRCL 344 (454)
Q Consensus 296 LdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~Yt--alAlramSrhFr~L 344 (454)
-.|+|+..++||+-+.+ |.. ...+|+. ..+++.|..++..|
T Consensus 8 dpELDqFMeaYc~~L~k----yke----eL~~p~~EA~~f~~~ie~qL~~L 50 (52)
T PF03791_consen 8 DPELDQFMEAYCDMLVK----YKE----ELQRPFQEAMEFCREIEQQLSSL 50 (52)
T ss_pred CccHHHHHHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999987665 321 2334443 46667777666655
No 44
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=45.23 E-value=92 Score=33.83 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHH
Q 012889 279 SLEFMELQKRKTKLLS-------------MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLR 345 (454)
Q Consensus 279 s~er~elq~KKtKLLs-------------MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~Lr 345 (454)
..+++.+..+.++|.+ +++|++|+++--..-++.++... .|+|.|++-.+.+-+|+..+. ..-..
T Consensus 356 ~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~ 433 (520)
T cd03344 356 DYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDE 433 (520)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHH
Confidence 4567777777777753 57888888887777777777774 899999998888887876553 21111
Q ss_pred ----HHHHHHHHHHHHHhCCC
Q 012889 346 ----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 346 ----daI~~QI~~~~~~lge~ 362 (454)
+++..-++...+.+-++
T Consensus 434 ~~~~~~~a~Al~~ip~~La~N 454 (520)
T cd03344 434 KLGIEIVRRALEAPLRQIAEN 454 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 33334444455555544
No 45
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=44.39 E-value=68 Score=34.40 Aligned_cols=36 Identities=19% Similarity=0.505 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 012889 283 MELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFE 318 (454)
Q Consensus 283 ~elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe 318 (454)
.+|..-..+-+.+|+.+..+|+.||.++-.++..+-
T Consensus 407 e~L~~~l~~~~~~Ld~Ie~~Y~~fh~~~~~~~~~yP 442 (473)
T PF14643_consen 407 EKLKEHLEKALDLLDQIEEEYEDFHKKQTAIVMEYP 442 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999999999999877765
No 46
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=43.48 E-value=1.2e+02 Score=32.82 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=45.0
Q ss_pred CchhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKA 336 (454)
Q Consensus 278 ss~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlra 336 (454)
+..+++.|+.+.++|- ..++|++|+++--..-++..+..- .|.|.|++-.+.+.+|+.
T Consensus 356 ~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~ 426 (524)
T TIGR02348 356 SDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG 426 (524)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH
Confidence 4466778888877753 367888888888877777777774 899999998888877775
No 47
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=43.21 E-value=15 Score=37.19 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.|+-...-.|..=|.+. -||--.|+.+||...|.+.+||.-||-|
T Consensus 173 Tf~g~qi~~le~~feqt---kylaG~~ra~lA~~lgmteSqvkVWFQN 217 (288)
T KOG0847|consen 173 TFTGHQIYQLERKFEQT---KYLAGADRAQLAQELNMTESQVKVWFQN 217 (288)
T ss_pred Cccchhhhhhhhhhhhh---hcccchhHHHhhccccccHHHHHHHHhc
Confidence 37877777787767664 8999999999999999999999999987
No 48
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=42.89 E-value=90 Score=34.18 Aligned_cols=59 Identities=27% Similarity=0.275 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAM 337 (454)
Q Consensus 278 ss~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlram 337 (454)
+..+++.|+.+.++|- ..++|++|+++--..-++..+... .|.|.|++-.+.+.+|+.+
T Consensus 357 ~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~ 428 (542)
T PRK00013 357 SDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL 428 (542)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh
Confidence 4456777777776664 256777777777777777777664 8999998888887777654
No 49
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=41.66 E-value=2e+02 Score=23.70 Aligned_cols=74 Identities=11% Similarity=0.166 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCch-hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012889 285 LQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAA-RVYSALASKAMSRHFRCLRDGIVGQIQATKKA 358 (454)
Q Consensus 285 lq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA-~~YtalAlramSrhFr~LrdaI~~QI~~~~~~ 358 (454)
+-..-.+.++.+.|+|.++....+++..-+..|-...+.+.. ..=..-.++.|...+..++..--..|..+..+
T Consensus 13 LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~ 87 (105)
T PF12998_consen 13 LPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQA 87 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467889999999999999999999999999888776322 22234666777777777776666666655543
No 50
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=40.88 E-value=8.6 Score=28.98 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccc
Q 012889 415 LRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPT 450 (454)
Q Consensus 415 LRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNW 450 (454)
|..|+... ...|+.+.-..||.-.|++..++-.|
T Consensus 27 l~~~~~~~--~~~~~~~~l~~ia~~l~~~~~el~~~ 60 (63)
T PF13443_consen 27 LSRILNGK--PSNPSLDTLEKIAKALNCSPEELFEY 60 (63)
T ss_dssp HHHHHTTT-------HHHHHHHHHHHT--HHHCTEC
T ss_pred HHHHHhcc--cccccHHHHHHHHHHcCCCHHHHhhc
Confidence 44555432 12566677777777777776665443
No 51
>CHL00093 groEL chaperonin GroEL
Probab=39.30 E-value=2.2e+02 Score=31.03 Aligned_cols=60 Identities=28% Similarity=0.276 Sum_probs=44.6
Q ss_pred CchhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMS 338 (454)
Q Consensus 278 ss~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramS 338 (454)
+..++..|+.+.++|- ..++|.+|+++--..-++..+.. -.|.|.|++-.+.+.+|+..+
T Consensus 357 ~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~-gvVpGGGa~e~~~s~~L~~~~ 429 (529)
T CHL00093 357 SSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEE-GIVPGGGATLVHLSENLKTWA 429 (529)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc-CcccCCcHHHHHHHHHHHHHh
Confidence 3456777788887774 35777777777777777777766 479999999888888887653
No 52
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.34 E-value=1.2e+02 Score=31.77 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhccCCchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012889 297 EEVDRRYRHYCDQMKAVVSSFE-----AVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQA 354 (454)
Q Consensus 297 dEVdrRYrqY~~Qmq~VvssFe-----~vAG~gaA~~YtalAlramSrhFr~LrdaI~~QI~~ 354 (454)
+||-+-..+|+..||.+-++.. -+.+.-++..|.++.||+.|+.||-+-..-...|+.
T Consensus 107 q~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~ 169 (305)
T KOG0809|consen 107 QEITQLLQKCQKLIQRLSASLNQLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRN 169 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666677799999999998884 344555788899999999999999999999888873
No 53
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=36.29 E-value=41 Score=32.02 Aligned_cols=23 Identities=43% Similarity=0.769 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 012889 297 EEVDRRYRHYCDQMKAVVSSFEA 319 (454)
Q Consensus 297 dEVdrRYrqY~~Qmq~VvssFe~ 319 (454)
-||.+||++|..+|.+|-..|-.
T Consensus 27 ~el~~~~~~Yr~~m~alR~~f~e 49 (170)
T PF14943_consen 27 KELKRRYNNYRTQMRALRSEFRE 49 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999863
No 54
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=32.72 E-value=2.3e+02 Score=30.97 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHH
Q 012889 280 LEFMELQKRKTKLLS-------------MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMS 338 (454)
Q Consensus 280 ~er~elq~KKtKLLs-------------MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramS 338 (454)
.++..++.+.++|-. .|+|++|+++--..-++..+..- .|.|.|++-.+.+.+|+.++
T Consensus 360 ~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~ 430 (545)
T PRK12852 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRIN 430 (545)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhh
Confidence 456667777666642 46777777776666666666663 79999999888887777654
No 55
>PTZ00114 Heat shock protein 60; Provisional
Probab=31.24 E-value=2.7e+02 Score=30.61 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHH
Q 012889 279 SLEFMELQKRKTKLLS-------------MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMS 338 (454)
Q Consensus 279 s~er~elq~KKtKLLs-------------MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramS 338 (454)
..++..++.+.++|-. .|+|++|+++--..-++..+... .|.|.|++-.+.+.+|+.++
T Consensus 371 ~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~ 442 (555)
T PTZ00114 371 EYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLE 442 (555)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHh
Confidence 3456666666666653 57888888887777777777766 79999998888877776543
No 56
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=31.02 E-value=1.8e+02 Score=31.86 Aligned_cols=57 Identities=25% Similarity=0.252 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHH
Q 012889 280 LEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAM 337 (454)
Q Consensus 280 ~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlram 337 (454)
.++..|+.+.++|- ..++|++|+++--..-++..+... .|+|.|++-.+.+.+|+.+
T Consensus 360 ~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~ 429 (544)
T PRK12850 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL 429 (544)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc
Confidence 45556666666653 368888888888888888877774 8999999888888777755
No 57
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=29.49 E-value=1.4e+02 Score=32.37 Aligned_cols=68 Identities=13% Similarity=0.275 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhCCC
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLR----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~Lr----daI~~QI~~~~~~lge~ 362 (454)
+|+|++|+.+--..-++.++..=-.|.|.|++-.+.+..|+.++....... +++..-|....+.|-++
T Consensus 384 ~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~N 455 (533)
T PTZ00212 384 ILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADN 455 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777776655444444433323689999998888888887655432222 23334444555555554
No 58
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=28.90 E-value=52 Score=28.73 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccccc
Q 012889 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY 452 (454)
Q Consensus 405 RgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFi 452 (454)
++-....+.-+.+|+.+|+..| ++ -..||+..|++...+..+|.
T Consensus 4 ~~~~~~~i~~~~~~I~~~~~~~-~s---l~~lA~~~g~S~~~l~r~Fk 47 (127)
T PRK11511 4 RNTDAITIHSILDWIEDNLESP-LS---LEKVSERSGYSKWHLQRMFK 47 (127)
T ss_pred ccccHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHCcCHHHHHHHHH
Confidence 3344556667789999998777 33 45789999999999888875
No 59
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=28.27 E-value=44 Score=38.92 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 412 VSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 412 v~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.+|++.+.- ++.|+++|...+|.+.||...-|.-||-+
T Consensus 568 ~sllkayyal---n~~ps~eelskia~qvglp~~vvk~wfE~ 606 (1007)
T KOG3623|consen 568 TSLLKAYYAL---NGLPSEEELSKIAQQVGLPFAVVKAWFED 606 (1007)
T ss_pred HHHHHHHHHh---cCCCCHHHHHHHHHHhcccHHHHHHHHHh
Confidence 7888988876 59999999999999999999999999964
No 60
>TIGR02481 hemeryth_dom hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.
Probab=28.19 E-value=2.5e+02 Score=23.87 Aligned_cols=19 Identities=37% Similarity=0.800 Sum_probs=15.6
Q ss_pred CCChhHHHHHHHHHHHhcC
Q 012889 406 GLPERSVSVLRAWLFEHFL 424 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~ 424 (454)
.+..+....|..||..|..
T Consensus 98 ~~~~~~~~~l~~Wl~~HI~ 116 (126)
T TIGR02481 98 SLAEELLDFLKDWLVNHIL 116 (126)
T ss_pred hHHHHHHHHHHHHHHHHhH
Confidence 4667788899999999954
No 61
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=27.73 E-value=1.4e+02 Score=31.88 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhCCC
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLR----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~Lr----daI~~QI~~~~~~lge~ 362 (454)
+|+|++|+.+--..-++..+..=..|.|.|++-.+.+.+|+.++....... +++..-|+...+.|-++
T Consensus 341 ~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~N 412 (484)
T cd03342 341 TITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAEN 412 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776655554444433323799999998888888887655432211 33444455555566544
No 62
>PF13518 HTH_28: Helix-turn-helix domain
Probab=26.98 E-value=16 Score=26.37 Aligned_cols=21 Identities=38% Similarity=0.359 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCcccccccccC
Q 012889 433 KHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 433 K~~LA~qTGLS~sQVsNWFiN 453 (454)
...+|++.|++..+|.+|...
T Consensus 15 ~~~~a~~~gis~~tv~~w~~~ 35 (52)
T PF13518_consen 15 VREIAREFGISRSTVYRWIKR 35 (52)
T ss_pred HHHHHHHHCCCHhHHHHHHHH
Confidence 457999999999999999754
No 63
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.79 E-value=3.4e+02 Score=26.66 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCch----------hhhHHHHHHHHHHHhhhHHHHHHHHHH
Q 012889 284 ELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAA----------RVYSALASKAMSRHFRCLRDGIVGQIQ 353 (454)
Q Consensus 284 elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA----------~~YtalAlramSrhFr~LrdaI~~QI~ 353 (454)
.+...-.||-.+++.+.+|-++.-..+......+...+-.... -+-.-=+|..|++||..+-+...+|-+
T Consensus 33 ~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~~~~s~~~~~~a~ 112 (246)
T cd07597 33 RLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHFQLLSDLSEDEAR 112 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888899999999999998888888888865554421 133356889999999999988888877
Q ss_pred HHHHHhC
Q 012889 354 ATKKAMG 360 (454)
Q Consensus 354 ~~~~~lg 360 (454)
+....+.
T Consensus 113 ~~~~~vl 119 (246)
T cd07597 113 AEEDGVL 119 (246)
T ss_pred HHHhhhh
Confidence 6554433
No 64
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=24.96 E-value=2e+02 Score=30.64 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---hhccCCchhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhCCC
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFE---AVAGNGAARVYSALASKAMSRHFRCLR----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe---~vAG~gaA~~YtalAlramSrhFr~Lr----daI~~QI~~~~~~lge~ 362 (454)
+|+|++|+ ..+-+..|-++++ .|.|.|++-.+.+.+|+.++....... +++..-++...+.|-++
T Consensus 328 ~l~E~er~---i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~N 399 (472)
T cd03341 328 ILDDVERA---IDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAEN 399 (472)
T ss_pred HHHHHHHH---HHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 5566666666777 689999988888888887765443322 22333344455555554
No 65
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=24.32 E-value=1.9e+02 Score=31.24 Aligned_cols=69 Identities=13% Similarity=0.290 Sum_probs=40.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhCCC
Q 012889 294 SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLR----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 294 sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~Lr----daI~~QI~~~~~~lge~ 362 (454)
.+++|++|+.+--..-++.++..=-.|.|.|++-.+.+.+|+.++....... ++...-++...+.|-++
T Consensus 374 ~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~N 446 (517)
T TIGR02342 374 LVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAEN 446 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888776655544444333212589999888888888876643322111 34444455555566554
No 66
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=24.23 E-value=95 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.369 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012889 294 SMLEEVDRRYRHYCDQMKAVVSSFEA 319 (454)
Q Consensus 294 sMLdEVdrRYrqY~~Qmq~VvssFe~ 319 (454)
.=.+.|.+|++.|+++...|+..|+.
T Consensus 123 d~~~~i~~Rl~~y~~~~~~i~~~y~~ 148 (151)
T PF00406_consen 123 DNEEVIKKRLEEYRENTEPILDYYKE 148 (151)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678999999999999999999973
No 67
>PRK14104 chaperonin GroEL; Provisional
Probab=23.73 E-value=4.8e+02 Score=28.74 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=40.2
Q ss_pred CchhHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLLS-------------MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAM 337 (454)
Q Consensus 278 ss~er~elq~KKtKLLs-------------MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlram 337 (454)
+..++..++.|.++|.. .++|++++++--..-++..+..= .|.|.|++-.+.+..|+.+
T Consensus 358 ~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~ 429 (546)
T PRK14104 358 SDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGI 429 (546)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHh
Confidence 34677888888888764 45666666555555555555552 7999998888887777655
No 68
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=23.25 E-value=1e+02 Score=26.26 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=21.6
Q ss_pred chhHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Q 012889 279 SLEFMELQ-KRKTKLLSMLEEVDRRYRHYCD 308 (454)
Q Consensus 279 s~er~elq-~KKtKLLsMLdEVdrRYrqY~~ 308 (454)
-++|.|.- .|+-.||+|++|+.|.|+--.+
T Consensus 41 fakrAEmyy~kRp~Li~~vee~yr~YrsLAe 71 (74)
T PF07765_consen 41 FAKRAEMYYKKRPELISLVEEFYRSYRSLAE 71 (74)
T ss_pred HHHhhHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 45666664 4556999999999998875443
No 69
>KOG4040 consensus NADH:ubiquinone oxidoreductase, NDUFB8/ASHI subunit [Energy production and conversion]
Probab=22.20 E-value=42 Score=32.54 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCCc
Q 012889 409 ERSVSVLRAWLFEHFLHPYPSD-VDKHILARQTGLSR 444 (454)
Q Consensus 409 KeAv~ILRaWL~eH~~hPYPSe-eEK~~LA~qTGLS~ 444 (454)
....+..-.|..+|+-.|||+. +|+..-|++.||-.
T Consensus 23 ~~g~rt~~gw~kD~kPgpyP~teeER~AAAkKY~lrp 59 (186)
T KOG4040|consen 23 PRGPRTFDGWYKDHKPGPYPTTEEERRAAAKKYGLRP 59 (186)
T ss_pred ccccccccccccccCCCCCCCCHHHHHHHHHHhCCCH
Confidence 3344456689999999999964 66777778888754
No 70
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.05 E-value=1.7e+02 Score=21.03 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCCCCCCHH-HHHHH
Q 012889 411 SVSVLRAWLFEHFLHPYPSDV-DKHIL 436 (454)
Q Consensus 411 Av~ILRaWL~eH~~hPYPSee-EK~~L 436 (454)
+..-|+.||..|- -|+|... .|..|
T Consensus 5 s~~~L~~wL~~~g-i~~~~~~~~rd~L 30 (38)
T PF10281_consen 5 SDSDLKSWLKSHG-IPVPKSAKTRDEL 30 (38)
T ss_pred CHHHHHHHHHHcC-CCCCCCCCCHHHH
Confidence 4578999999983 3445332 34443
No 71
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=21.20 E-value=5.5e+02 Score=24.91 Aligned_cols=67 Identities=9% Similarity=0.159 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Q 012889 283 MELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAMG 360 (454)
Q Consensus 283 ~elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~QI~~~~~~lg 360 (454)
.+++.....|..+++++...+..|..+|..-+- ..-..+|-+.|-+.+.+=.+.|...|+.+...+.
T Consensus 106 ~~~~~~~~~l~~l~~~l~~~l~~l~~~ie~~Lv-----------~Lal~ia~~vi~~el~~~~~~il~~v~~al~~lp 172 (246)
T PRK05687 106 AQAAPQAAQLQALAAQFQEPLALLDSVIESRLV-----------QLALELARQVIGQELKTDPSAILAAIRELLQALP 172 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhhccCHHHHHHHHHHHHHhcc
Confidence 445666778888888888888888887765222 2334566666766777777889888887666543
No 72
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=20.11 E-value=2.5e+02 Score=30.58 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---hhccCCchhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhCCC
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFE---AVAGNGAARVYSALASKAMSRHFRCLR----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe---~vAG~gaA~~YtalAlramSrhFr~Lr----daI~~QI~~~~~~lge~ 362 (454)
+|+|++|+++-- +..|-+.++ .|.|.|++-.+.+.+|+.++....... +++..-|+...+.|-++
T Consensus 384 ~l~E~er~l~DA---l~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~N 455 (531)
T TIGR02347 384 TIKQIKDAVRDG---LRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAEN 455 (531)
T ss_pred HHHHHHHHHHHH---HHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777776554 444444555 689999888887777776543221111 33444455555556554
Done!