Query 012889
Match_columns 454
No_of_seqs 266 out of 648
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 18:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lk2_A Homeobox protein TGIF1; 99.5 2.6E-15 8.9E-20 125.2 2.2 49 405-453 10-58 (89)
2 2dmn_A Homeobox protein TGIF2L 99.5 8.9E-15 3E-19 118.0 5.0 54 400-453 7-60 (83)
3 1x2n_A Homeobox protein pknox1 99.4 6.3E-14 2.2E-18 109.5 4.9 54 400-453 7-60 (73)
4 1du6_A PBX1, homeobox protein 99.4 7.3E-14 2.5E-18 106.4 4.4 54 400-453 3-56 (64)
5 3k2a_A Homeobox protein MEIS2; 99.4 5.7E-14 2E-18 109.4 3.3 48 406-453 4-51 (67)
6 1puf_B PRE-B-cell leukemia tra 99.4 2.3E-13 7.8E-18 106.3 4.5 53 401-453 2-54 (73)
7 1k61_A Mating-type protein alp 99.4 2.8E-13 9.4E-18 102.1 4.1 50 404-453 2-51 (60)
8 1b72_B Protein (PBX1); homeodo 99.3 4.3E-13 1.5E-17 107.7 4.0 53 401-453 2-54 (87)
9 1mnm_C Protein (MAT alpha-2 tr 99.3 5.5E-13 1.9E-17 107.7 4.3 55 399-453 26-80 (87)
10 1le8_B Mating-type protein alp 99.3 9.5E-13 3.2E-17 105.8 4.1 49 405-453 7-55 (83)
11 1akh_A Protein (mating-type pr 99.0 8.1E-11 2.8E-15 88.6 3.0 50 401-453 6-55 (61)
12 2ecc_A Homeobox and leucine zi 99.0 1.7E-10 6E-15 93.5 3.9 49 402-453 5-53 (76)
13 1bw5_A ISL-1HD, insulin gene e 98.9 9.1E-10 3.1E-14 84.4 4.1 51 400-453 3-53 (66)
14 2da4_A Hypothetical protein DK 98.9 4E-10 1.4E-14 89.5 1.9 53 401-453 9-62 (80)
15 2dmu_A Homeobox protein goosec 98.9 1.6E-09 5.3E-14 83.9 4.4 52 399-453 6-57 (70)
16 2e1o_A Homeobox protein PRH; D 98.8 2.3E-09 8E-14 83.1 4.5 52 399-453 6-57 (70)
17 2da1_A Alpha-fetoprotein enhan 98.8 2.4E-09 8.1E-14 82.7 3.7 51 400-453 7-57 (70)
18 2da2_A Alpha-fetoprotein enhan 98.8 3.2E-09 1.1E-13 82.0 4.3 51 400-453 7-57 (70)
19 1jgg_A Segmentation protein EV 98.8 2.9E-09 1E-13 80.2 3.8 50 401-453 2-51 (60)
20 1ig7_A Homeotic protein MSX-1; 98.8 3.2E-09 1.1E-13 79.1 3.9 49 402-453 2-50 (58)
21 2cra_A Homeobox protein HOX-B1 98.8 3.8E-09 1.3E-13 81.9 4.4 51 400-453 7-57 (70)
22 2k40_A Homeobox expressed in E 98.8 2.5E-09 8.5E-14 82.2 3.3 50 401-453 2-51 (67)
23 2djn_A Homeobox protein DLX-5; 98.8 2.7E-09 9.1E-14 82.8 3.4 52 399-453 6-57 (70)
24 2dmq_A LIM/homeobox protein LH 98.8 4.1E-09 1.4E-13 83.3 4.5 52 399-453 6-57 (80)
25 2hdd_A Protein (engrailed home 98.8 3.4E-09 1.2E-13 80.0 3.5 50 401-453 4-53 (61)
26 2da3_A Alpha-fetoprotein enhan 98.7 4.6E-09 1.6E-13 82.7 3.8 51 400-453 17-67 (80)
27 3rkq_A Homeobox protein NKX-2. 98.7 4.8E-09 1.7E-13 77.5 3.5 50 401-453 3-52 (58)
28 1fjl_A Paired protein; DNA-bin 98.7 6.1E-09 2.1E-13 82.8 4.2 51 400-453 18-68 (81)
29 2h1k_A IPF-1, pancreatic and d 98.7 5.6E-09 1.9E-13 79.5 3.8 50 401-453 4-53 (63)
30 2dn0_A Zinc fingers and homeob 98.7 8.5E-09 2.9E-13 81.2 3.9 51 400-453 8-58 (76)
31 2dms_A Homeobox protein OTX2; 98.7 1.1E-08 3.6E-13 81.3 4.4 51 400-453 7-57 (80)
32 2vi6_A Homeobox protein nanog; 98.7 8.3E-09 2.9E-13 78.1 3.4 50 401-453 4-53 (62)
33 2dmt_A Homeobox protein BARH-l 98.7 1.3E-08 4.4E-13 80.9 4.5 51 400-453 17-67 (80)
34 3a02_A Homeobox protein arista 98.7 8.9E-09 3E-13 77.5 3.1 47 404-453 3-49 (60)
35 2l7z_A Homeobox protein HOX-A1 98.7 1.5E-08 5E-13 79.5 4.3 50 401-453 8-57 (73)
36 1wh5_A ZF-HD homeobox family p 98.7 1.4E-08 4.8E-13 81.7 4.2 53 401-453 18-71 (80)
37 1zq3_P PRD-4, homeotic bicoid 98.7 1.1E-08 3.7E-13 79.1 3.3 50 401-453 3-52 (68)
38 1ftt_A TTF-1 HD, thyroid trans 98.6 1.6E-08 5.4E-13 78.2 3.8 49 402-453 4-52 (68)
39 1yz8_P Pituitary homeobox 2; D 98.6 4.7E-09 1.6E-13 81.0 0.6 50 401-453 4-53 (68)
40 2cue_A Paired box protein PAX6 98.6 1.6E-08 5.4E-13 80.4 3.6 51 400-453 7-57 (80)
41 1ahd_P Antennapedia protein mu 98.6 1.4E-08 4.8E-13 78.6 3.1 50 401-453 3-52 (68)
42 1nk2_P Homeobox protein VND; h 98.6 2.4E-08 8.2E-13 78.9 4.4 50 401-453 10-59 (77)
43 2d5v_A Hepatocyte nuclear fact 98.6 1.4E-08 4.9E-13 90.1 3.4 51 400-453 97-147 (164)
44 2m0c_A Homeobox protein arista 98.6 3.6E-08 1.2E-12 76.5 4.2 50 401-453 10-59 (75)
45 1puf_A HOX-1.7, homeobox prote 98.6 3.6E-08 1.2E-12 77.8 4.1 50 401-453 14-63 (77)
46 2cuf_A FLJ21616 protein; homeo 98.6 3.4E-08 1.1E-12 81.0 3.8 51 400-453 7-72 (95)
47 2hi3_A Homeodomain-only protei 98.6 3.6E-08 1.2E-12 77.2 3.7 50 402-453 4-53 (73)
48 2da5_A Zinc fingers and homeob 98.5 5.2E-08 1.8E-12 76.9 4.5 49 402-453 9-57 (75)
49 3nau_A Zinc fingers and homeob 98.5 2.7E-08 9.3E-13 79.2 2.9 47 404-453 8-54 (66)
50 2kt0_A Nanog, homeobox protein 98.5 4.9E-08 1.7E-12 77.8 4.3 51 400-453 22-72 (84)
51 3d1n_I POU domain, class 6, tr 98.5 4.7E-08 1.6E-12 86.1 4.5 50 401-453 94-143 (151)
52 1uhs_A HOP, homeodomain only p 98.5 4.3E-08 1.5E-12 76.3 3.7 50 402-453 3-52 (72)
53 2ly9_A Zinc fingers and homeob 98.5 6.1E-08 2.1E-12 75.6 4.2 51 400-453 6-56 (74)
54 2ecb_A Zinc fingers and homeob 98.5 4.6E-08 1.6E-12 81.0 3.7 48 403-453 14-61 (89)
55 3a03_A T-cell leukemia homeobo 98.5 4.5E-08 1.5E-12 73.0 3.0 45 406-453 3-47 (56)
56 1b8i_A Ultrabithorax, protein 98.5 5.2E-08 1.8E-12 77.9 3.5 50 401-453 21-70 (81)
57 3a01_A Homeodomain-containing 98.5 5.4E-08 1.9E-12 79.9 3.6 50 401-453 18-67 (93)
58 2r5y_A Homeotic protein sex co 98.4 7.9E-08 2.7E-12 77.6 2.8 51 400-453 28-78 (88)
59 1b72_A Protein (homeobox prote 98.4 8.6E-08 2.9E-12 78.8 2.9 51 400-453 34-84 (97)
60 3nar_A ZHX1, zinc fingers and 98.4 1.3E-07 4.3E-12 77.8 3.6 50 401-453 26-75 (96)
61 2dmp_A Zinc fingers and homeob 98.4 1.5E-07 5.2E-12 76.8 3.7 48 403-453 16-63 (89)
62 1wh7_A ZF-HD homeobox family p 98.4 2.1E-07 7.2E-12 75.2 3.9 52 401-453 18-71 (80)
63 2e19_A Transcription factor 8; 98.3 3.6E-07 1.2E-11 70.8 3.2 47 404-453 7-53 (64)
64 1wi3_A DNA-binding protein SAT 98.3 5.3E-07 1.8E-11 72.9 4.2 53 399-453 6-58 (71)
65 1au7_A Protein PIT-1, GHF-1; c 98.3 4.3E-07 1.5E-11 80.1 3.8 50 401-453 88-137 (146)
66 1e3o_C Octamer-binding transcr 98.2 6.3E-07 2.2E-11 79.9 3.6 50 401-453 102-151 (160)
67 2xsd_C POU domain, class 3, tr 98.2 6.6E-07 2.3E-11 80.5 3.0 50 401-453 100-149 (164)
68 2h8r_A Hepatocyte nuclear fact 98.2 7.9E-07 2.7E-11 84.6 3.4 45 406-453 148-213 (221)
69 2cqx_A LAG1 longevity assuranc 98.1 8.2E-07 2.8E-11 70.1 1.6 50 401-453 9-59 (72)
70 1lfb_A Liver transcription fac 98.1 1.1E-06 3.7E-11 73.9 2.3 49 402-453 11-80 (99)
71 1mh3_A Maltose binding-A1 home 98.1 1.1E-06 3.7E-11 84.1 2.6 47 404-453 369-415 (421)
72 2da6_A Hepatocyte nuclear fact 98.1 1.7E-06 5.6E-11 73.9 3.5 50 401-453 7-77 (102)
73 3l1p_A POU domain, class 5, tr 98.1 1E-06 3.5E-11 78.3 1.9 51 400-453 96-146 (155)
74 2l9r_A Homeobox protein NKX-3. 98.1 1.8E-06 6.2E-11 68.2 3.0 44 407-453 11-54 (69)
75 1ic8_A Hepatocyte nuclear fact 97.8 4.1E-06 1.4E-10 77.9 1.4 49 402-453 117-186 (194)
76 1x2m_A LAG1 longevity assuranc 97.7 1.2E-05 4E-10 63.3 2.2 41 411-453 11-51 (64)
77 2da7_A Zinc finger homeobox pr 97.4 5.4E-05 1.8E-09 61.3 2.6 42 409-453 14-55 (71)
78 2ys9_A Homeobox and leucine zi 90.5 0.062 2.1E-06 43.4 0.6 43 407-452 13-55 (70)
79 4afl_A P29ING4, inhibitor of g 56.7 79 0.0027 25.7 11.8 72 286-358 17-88 (104)
80 1we3_A CPN60(groel); chaperoni 53.2 49 0.0017 34.6 9.3 61 278-339 356-429 (543)
81 1wlx_A Alpha-actinin 4; three- 44.3 37 0.0013 29.9 5.7 70 280-351 45-117 (129)
82 2elh_A CG11849-PA, LD40883P; s 42.6 26 0.00091 27.2 4.1 44 401-452 17-60 (87)
83 1kp8_A Groel protein; chaperon 37.8 59 0.002 34.2 7.0 59 278-337 357-428 (547)
84 1gk4_A Vimentin; intermediate 33.7 89 0.0031 25.0 6.0 39 281-319 2-40 (84)
85 4afl_A P29ING4, inhibitor of g 33.3 86 0.0029 25.5 5.9 63 284-346 26-101 (104)
86 1tc3_C Protein (TC3 transposas 32.6 29 0.00099 22.4 2.5 40 406-453 5-44 (51)
87 1hlv_A CENP-B, major centromer 32.4 39 0.0013 27.3 3.7 46 402-453 3-48 (131)
88 3lsg_A Two-component response 29.7 36 0.0012 26.5 3.0 39 411-452 3-41 (103)
89 1hlv_A CENP-B, major centromer 28.4 1.4E+02 0.0048 24.0 6.4 53 401-454 67-126 (131)
90 1gs9_A Apolipoprotein E, APOE4 26.1 2.7E+02 0.0091 24.9 8.3 66 282-359 94-159 (165)
91 3iyg_Q T-complex protein 1 sub 23.4 1.5E+02 0.0051 30.5 6.9 65 295-362 368-439 (512)
92 3aq1_B Thermosome subunit; gro 23.3 1.5E+02 0.0051 30.5 6.9 42 295-339 334-378 (500)
93 1a6d_B Thermosome (beta subuni 23.3 1.4E+02 0.0049 30.9 6.9 45 295-339 381-425 (543)
94 1q3q_A Thermosome alpha subuni 22.1 1.7E+02 0.0058 30.5 7.1 42 296-340 384-428 (548)
95 3mov_A Lamin-B1; LMNB1, B-type 22.0 51 0.0018 27.4 2.6 37 283-319 15-51 (95)
96 3p9d_A T-complex protein 1 sub 21.3 1.7E+02 0.0058 30.6 7.0 42 299-340 395-439 (559)
97 1a6d_A Thermosome (alpha subun 21.2 1.7E+02 0.0058 30.4 6.9 45 295-339 380-424 (545)
98 2glo_A Brinker CG9653-PA; prot 20.8 69 0.0024 23.0 2.9 45 404-452 3-47 (59)
99 3mn2_A Probable ARAC family tr 20.1 52 0.0018 25.8 2.2 38 411-452 3-40 (108)
100 3iyg_H T-complex protein 1 sub 20.0 1.9E+02 0.0065 29.9 6.9 65 295-362 372-443 (515)
No 1
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-15 Score=125.22 Aligned_cols=49 Identities=45% Similarity=0.756 Sum_probs=47.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 405 RgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.-||++++.+|++||.+|..||||++++|..||++||||..||+|||+|
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~N 58 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFIN 58 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3499999999999999999999999999999999999999999999998
No 2
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.51 E-value=8.9e-15 Score=118.04 Aligned_cols=54 Identities=31% Similarity=0.588 Sum_probs=50.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+++++.|+++++.+|+.||.+|..||||+.++|..||.+|||+..||.+||.|
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqN 60 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFIN 60 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhh
Confidence 345555699999999999999999999999999999999999999999999998
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=6.3e-14 Score=109.49 Aligned_cols=54 Identities=35% Similarity=0.575 Sum_probs=50.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|++.++.+|+.||.+|..+|||+.+++..||.++||+..||.+||.|
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 60 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN 60 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 344555699999999999999999999999999999999999999999999987
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=7.3e-14 Score=106.44 Aligned_cols=54 Identities=26% Similarity=0.453 Sum_probs=50.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+++..|+++.+.+|+.||.+|..+|||+.+++..||.++||+..||.+||.|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 56 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 56 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345666799999999999999999999999999999999999999999999987
No 5
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=5.7e-14 Score=109.43 Aligned_cols=48 Identities=42% Similarity=0.726 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.||++++.+|+.||.+|..||||+.++|..||.+|||+..||.|||.|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqN 51 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFIN 51 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHH
Confidence 599999999999999999999999999999999999999999999987
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.38 E-value=2.3e-13 Score=106.33 Aligned_cols=53 Identities=28% Similarity=0.532 Sum_probs=50.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|+++.|++..+.+|+.||.+|..+|||+.+++..||..+||+..||.+||.|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqN 54 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 45666799999999999999999999999999999999999999999999987
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.37 E-value=2.8e-13 Score=102.08 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=48.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 404 rRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++.|+++++.+|+.||..|..+|||+.+++..||.++||+..||.+||.|
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqN 51 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999987
No 8
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.34 E-value=4.3e-13 Score=107.72 Aligned_cols=53 Identities=28% Similarity=0.532 Sum_probs=49.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|+++.|++..+.+|+.||.+|..+|||+.+++..||.++||+..||.+||.|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 54 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 45566799999999999999999999999999999999999999999999987
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.33 E-value=5.5e-13 Score=107.66 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=50.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+++++..|+++++.+|+.||..|..+|||+.+++..||..+||+..||.+||.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqN 80 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 80 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3444455699999999999999999999999999999999999999999999987
No 10
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.31 E-value=9.5e-13 Score=105.83 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=47.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 405 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 405 RgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.|+++++.+|+.||.+|..+|||+.+++..||..+||+..||.+||.|
T Consensus 7 ~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqN 55 (83)
T 1le8_B 7 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAA 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHH
Confidence 3499999999999999999999999999999999999999999999987
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.03 E-value=8.1e-11 Score=88.63 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=42.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|..||..| |||+.+++..||..+||+..||.+||.|
T Consensus 6 rr~Rt~ft~~q~~~Le~~f~~~---~yp~~~~r~~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 6 PKGKSSISPQARAFLEEVFRRK---QSLNSKEKEEVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp ------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhC---CCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4445569999999999999886 9999999999999999999999999987
No 12
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.00 E-value=1.7e-10 Score=93.53 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=45.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.++.|+++.+.+|+.||..+ |||+.+|+..||..|||+..||.+||.|
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~---~YPs~~er~~LA~~tgLte~qIkvWFqN 53 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC---QWARREDYQKLEQITGLPRPEIIQWFGD 53 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHCcCHHHhhHHhHh
Confidence 455669999999999999975 9999999999999999999999999987
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.89 E-value=9.1e-10 Score=84.37 Aligned_cols=51 Identities=25% Similarity=0.256 Sum_probs=46.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..||.. +|||+..++..||..+||+..||.+||.|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQN 53 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 4556667999999999999987 59999999999999999999999999986
No 14
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4e-10 Score=89.50 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=47.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEH-FLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH-~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|+.||..+ ..||||+.+++..||..+||+..||.+||.|
T Consensus 9 rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqN 62 (80)
T 2da4_A 9 LQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGN 62 (80)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHH
Confidence 3444459999999999999887 6679999999999999999999999999987
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-09 Score=83.95 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=46.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+|++..|+.+.+.+|..||.. +|||+..++..||..+||+..||.+||.|
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKN 57 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehcccc
Confidence 34555666999999999999987 59999999999999999999999999987
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.83 E-value=2.3e-09 Score=83.10 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=46.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+|++..|+.+.+.+|..||.. +|||+..++..||..+||+..||.+||.|
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQN 57 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 34555667999999999999987 59999999999999999999999999976
No 17
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.80 E-value=2.4e-09 Score=82.74 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=46.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..||.. +|||+..++..||..+||+..||.+||.|
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRN 57 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhh
Confidence 4455566999999999999987 49999999999999999999999999987
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.80 E-value=3.2e-09 Score=82.04 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..||.. +|||+..++..||..+||+..||.+||.|
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQN 57 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHh
Confidence 3455556999999999999987 59999999999999999999999999976
No 19
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.79 E-value=2.9e-09 Score=80.17 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=45.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQN 51 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHH
Confidence 355667999999999999987 49999999999999999999999999977
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=98.79 E-value=3.2e-09 Score=79.12 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=45.4
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 50 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhH
Confidence 55667999999999999987 59999999999999999999999999976
No 21
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.78 E-value=3.8e-09 Score=81.90 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=46.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQN 57 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 4455556999999999999987 59999999999999999999999999976
No 22
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.78 E-value=2.5e-09 Score=82.17 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=45.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|..||.. +|||+.+++..||..+||+..||.+||.|
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQN 51 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHh
Confidence 455667999999999999965 69999999999999999999999999976
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.7e-09 Score=82.78 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=46.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+|++..|+.+.+.+|..||.. +|||+..++..||..+||+..||.+||.|
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQN 57 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34555666999999999999975 69999999999999999999999999987
No 24
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.1e-09 Score=83.32 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=46.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
..+|++..|+.+.+.+|..||..+ |||+..++..||.++||+..||.+||.|
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAIN---HNPDAKDLKQLAQKTGLTKRVLQVWFQN 57 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhCCCHHHhhHccHH
Confidence 345556679999999999999874 9999999999999999999999999976
No 25
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=98.77 E-value=3.4e-09 Score=80.04 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=44.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKN 53 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 455667999999999999987 59999999999999999999999999976
No 26
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.75 E-value=4.6e-09 Score=82.68 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=46.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..||..+ |||+.+++..||.++||+..||.+||-|
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqN 67 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLD---SNPTRKMLDHIAHEVGLKKRVVQVWFQN 67 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCcCHHHhHHHhHH
Confidence 34445569999999999999875 9999999999999999999999999977
No 27
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.74 E-value=4.8e-09 Score=77.48 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=45.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQN 52 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHH
Confidence 345556999999999999974 69999999999999999999999999987
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.74 E-value=6.1e-09 Score=82.83 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=46.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+...+.+|..||.. +|||+..++..||.++||+..||.+||.|
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 68 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQN 68 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3445556999999999999987 59999999999999999999999999987
No 29
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=98.73 E-value=5.6e-09 Score=79.48 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=45.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (63)
T 2h1k_A 4 KRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQN 53 (63)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHh
Confidence 455666999999999999987 59999999999999999999999999976
No 30
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=8.5e-09 Score=81.25 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.+.+..|+++.+.+|+.||.. +|||+..++..||.++||+..||.+||.|
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqN 58 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSD 58 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHH
Confidence 3444667999999999999987 59999999999999999999999999976
No 31
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.69 E-value=1.1e-08 Score=81.25 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=46.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKN 57 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHH
Confidence 4455556999999999999987 59999999999999999999999999976
No 32
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=98.68 E-value=8.3e-09 Score=78.13 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQN 53 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHH
Confidence 345556999999999999987 59999999999999999999999999976
No 33
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.3e-08 Score=80.94 Aligned_cols=51 Identities=25% Similarity=0.156 Sum_probs=45.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQN 67 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHH
Confidence 3444556999999999999987 59999999999999999999999999976
No 34
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=98.67 E-value=8.9e-09 Score=77.53 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=42.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 404 rRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||.|
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 49 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQN 49 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 456999999999999977 59999999999999999999999999976
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.66 E-value=1.5e-08 Score=79.48 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=45.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 8 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (73)
T 2l7z_A 8 RKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQN 57 (73)
T ss_dssp CCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444446999999999999987 59999999999999999999999999976
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.66 E-value=1.4e-08 Score=81.67 Aligned_cols=53 Identities=11% Similarity=0.017 Sum_probs=47.0
Q ss_pred CCCCCCCChhHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFE-HFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~e-H~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|..+|.. |+.+|||+..++..||..+||+..||..||.|
T Consensus 18 rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqN 71 (80)
T 1wh5_A 18 KRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHN 71 (80)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccc
Confidence 444445999999999998885 56789999999999999999999999999987
No 37
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.65 E-value=1.1e-08 Score=79.09 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=45.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKN 52 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 455667999999999999976 69999999999999999999999999976
No 38
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.64 E-value=1.6e-08 Score=78.20 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=44.8
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (68)
T 1ftt_A 4 KRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQN 52 (68)
T ss_dssp SSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHH
Confidence 44556999999999999987 59999999999999999999999999976
No 39
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.63 E-value=4.7e-09 Score=81.00 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=45.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..||.. +|||+..++..||..+||+..||.+||.|
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (68)
T 1yz8_P 4 RRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKN 53 (68)
T ss_dssp SCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 445556999999999999976 69999999999999999999999999987
No 40
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.63 E-value=1.6e-08 Score=80.42 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=45.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSN 57 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHH
Confidence 3455556999999999999975 69999999999999999999999999976
No 41
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.62 E-value=1.4e-08 Score=78.62 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=45.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqN 52 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQN 52 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHH
Confidence 344556999999999999987 49999999999999999999999999976
No 42
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.62 E-value=2.4e-08 Score=78.85 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=45.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 10 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (77)
T 1nk2_P 10 RKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQN 59 (77)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 344445999999999999987 59999999999999999999999999976
No 43
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.62 E-value=1.4e-08 Score=90.05 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=45.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+...+.+|..||..+ |||+..++..||.++||+..||.+||.|
T Consensus 97 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~la~~l~L~~~qV~~WFqN 147 (164)
T 2d5v_A 97 PKKPRLVFTDVQRRTLHAIFKEN---KRPSKELQITISQQLGLELSTVSNFFMN 147 (164)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHhhhcChh
Confidence 34555569999999999999986 9999999999999999999999999987
No 44
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.57 E-value=3.6e-08 Score=76.53 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=44.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 10 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (75)
T 2m0c_A 10 RRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQN 59 (75)
T ss_dssp CSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 344445999999999999986 59999999999999999999999999987
No 45
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=98.57 E-value=3.6e-08 Score=77.82 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=45.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 14 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 63 (77)
T 1puf_A 14 RKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQN 63 (77)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 444556999999999999987 59999999999999999999999999976
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.56 E-value=3.4e-08 Score=80.96 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=46.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------LSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTG---------------LS~sQVsNWFiN 453 (454)
.+|++..|++..+.+|..||.+ +|||+..++..||..+| |+..||.+||.|
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqN 72 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFAN 72 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHH
Confidence 3444556999999999999998 69999999999999999 999999999987
No 47
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.55 E-value=3.6e-08 Score=77.15 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+++..|+.+.+.+|..+|.. .+|||+..++..||..+||+..||.+||-|
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~~~l~~~qV~~WFqN 53 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 53 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHH--TTSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 44556999999999999973 159999999999999999999999999976
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=5.2e-08 Score=76.85 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=44.7
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++++.++.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSE 57 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHH
Confidence 34556999999999999987 59999999999999999999999999976
No 49
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.55 E-value=2.7e-08 Score=79.19 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=42.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 404 rRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.|.-+++.+.+|+.+|..+ |||+..|+..||..||||..||.+||-|
T Consensus 8 ~~~~~~~Ql~~LE~~F~~~---~YPs~~er~eLA~~tgLt~~qVkvWFqN 54 (66)
T 3nau_A 8 HRKKTKEQIAHLKASFLQS---QFPDDAEVYRLIEVTGLARSEIKKWFSD 54 (66)
T ss_dssp ---CCHHHHHHHHHHHHGG---GSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCcCHHHhhHhccc
Confidence 3445899999999999986 9999999999999999999999999987
No 50
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=98.54 E-value=4.9e-08 Score=77.76 Aligned_cols=51 Identities=18% Similarity=0.084 Sum_probs=45.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqN 72 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQN 72 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444556999999999999987 59999999999999999999999999976
No 51
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=98.54 E-value=4.7e-08 Score=86.13 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=45.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..||.. +|||+..++..||.++||+..||.+||.|
T Consensus 94 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 143 (151)
T 3d1n_I 94 RKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSN 143 (151)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHH
Confidence 334445999999999999988 59999999999999999999999999987
No 52
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.53 E-value=4.3e-08 Score=76.32 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.+..|+.+.+.+|..+|.. .+|||+..++..||..+||+..||.+||-|
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 52 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHH
Confidence 34556999999999999963 259999999999999999999999999976
No 53
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.52 E-value=6.1e-08 Score=75.56 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=46.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.+.+..|+.+.+.+|+.+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqN 56 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSD 56 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChh
Confidence 4455667999999999999987 59999999999999999999999999976
No 54
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.52 E-value=4.6e-08 Score=81.04 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=44.4
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 403 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 403 prRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.+.++.+.+.+|+.||.. +|||+..++..||..+||+..||.+||.|
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqN 61 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTE 61 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccc
Confidence 3457999999999999987 59999999999999999999999999987
No 55
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=98.51 E-value=4.5e-08 Score=73.03 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=41.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 47 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQN 47 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 4789999999999987 59999999999999999999999999976
No 56
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.50 E-value=5.2e-08 Score=77.89 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=44.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 21 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 70 (81)
T 1b8i_A 21 RRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQN 70 (81)
T ss_dssp ---CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 444556999999999999987 59999999999999999999999999976
No 57
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.50 E-value=5.4e-08 Score=79.85 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=45.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 18 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (93)
T 3a01_A 18 KKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQN 67 (93)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHh
Confidence 344445999999999999987 49999999999999999999999999977
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=98.43 E-value=7.9e-08 Score=77.60 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=44.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqN 78 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQN 78 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHH
Confidence 3455556999999999999975 69999999999999999999999999976
No 59
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.42 E-value=8.6e-08 Score=78.81 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=44.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 84 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQN 84 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHH
Confidence 3455556999999999999976 59999999999999999999999999976
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=77.83 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.|++..|+...+.+|+.+|.. +|||+..++..||.++||+..||.+||-|
T Consensus 26 ~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 75 (96)
T 3nar_A 26 TGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGD 75 (96)
T ss_dssp -CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchh
Confidence 455667999999999999986 59999999999999999999999999976
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.5e-07 Score=76.78 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 403 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 403 prRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+.++++.+.+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqN 63 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSE 63 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHh
Confidence 3445999999999999987 49999999999999999999999999976
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.37 E-value=2.1e-07 Score=75.17 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=45.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFL--HPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~--hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+.+.+.+|.. |.+++- +|||+..++..||..+||+..||..||-|
T Consensus 18 rR~Rt~ft~~Ql~~Le~-F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqN 71 (80)
T 1wh7_A 18 KRFRTKFTAEQKEKMLA-FAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHN 71 (80)
T ss_dssp SCCCCCCCHHHHHHHHH-HHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHT
T ss_pred CCCCccCCHHHHHHHHH-HHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccc
Confidence 44444599999999994 776543 89999999999999999999999999987
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=3.6e-07 Score=70.77 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=42.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 404 rRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.-...++.+.+|+.+|.. +|||+..++..||.++||+..||..||-|
T Consensus 7 ~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqN 53 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEK 53 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhc
Confidence 334668999999999965 69999999999999999999999999976
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.27 E-value=5.3e-07 Score=72.93 Aligned_cols=53 Identities=15% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 399 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 399 ~~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.++|+|..|+.++..+|+..|.. .+|||+.++++.||.+|||+..+|.-||-|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQN 58 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQN 58 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhcc
Confidence 46677778999999999999987 249999999999999999999999999976
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=98.26 E-value=4.3e-07 Score=80.07 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=45.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 88 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 137 (146)
T 1au7_A 88 RKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCN 137 (146)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHh
Confidence 444556999999999999987 59999999999999999999999999977
No 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=98.21 E-value=6.3e-07 Score=79.88 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=44.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|++..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 102 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 151 (160)
T 1e3o_C 102 RKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSN 151 (160)
T ss_dssp --CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHH
Confidence 344445999999999999987 59999999999999999999999999977
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.17 E-value=6.6e-07 Score=80.51 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
+|+|..|+...+.+|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 100 rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 149 (164)
T 2xsd_C 100 RKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCN 149 (164)
T ss_dssp ------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHH
Confidence 344445999999999999987 59999999999999999999999999976
No 68
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.16 E-value=7.9e-07 Score=84.64 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=42.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CCcccccccccC
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVCPTIYV 453 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTG---------------------LS~sQVsNWFiN 453 (454)
.|++..+.+|..||.. +|||+..+|..||..+| ||..||.|||.|
T Consensus 148 ~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqN 213 (221)
T 2h8r_A 148 KWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 213 (221)
T ss_dssp CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHH
Confidence 4999999999999997 59999999999999988 899999999987
No 69
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.09 E-value=8.2e-07 Score=70.09 Aligned_cols=50 Identities=12% Similarity=-0.000 Sum_probs=43.9
Q ss_pred CCCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWL-FEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL-~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.++++.++.+.+.+|...| .. ++||+..++..||.++||+..||..||-|
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqN 59 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRH 59 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhh
Confidence 4456668888899999999 54 69999999999999999999999999976
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.08 E-value=1.1e-06 Score=73.86 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQ------------------TG---LSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~q------------------TG---LS~sQVsNWFiN 453 (454)
|++..|+...+.+|..+|.. +|||+..++..||.. +| |+..||.+||.|
T Consensus 11 r~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqN 80 (99)
T 1lfb_A 11 RNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFAN 80 (99)
T ss_dssp --CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHH
Confidence 33445999999999999976 599999999999999 88 999999999976
No 71
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.08 E-value=1.1e-06 Score=84.08 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 404 rRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++.|.+..+..|+.+|.. ||||+..+|.+||++|||+..||.+||.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n 415 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFIN 415 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhh
Confidence 445889999999999976 49999999999999999999999999987
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.7e-06 Score=73.87 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=44.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCCcccccccccC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQT---------------------GLSRSQVCPTIYV 453 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qT---------------------GLS~sQVsNWFiN 453 (454)
+|.|..|++....+|..+|..+ |||+.+++..||..+ +||..+|.|||.|
T Consensus 7 Rr~Rt~ft~~ql~~Le~~F~~~---~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqN 77 (102)
T 2da6_A 7 GRNRFKWGPASQQILYQAYDRQ---KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 77 (102)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecc
Confidence 3334459999999999999874 999999999999999 7999999999987
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.06 E-value=1e-06 Score=78.31 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=45.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 400 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 400 ~~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.+|+|..|+...+.+|..||.. +|||+..++..||.++||+..||.+||-|
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqN 146 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSN 146 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeecccc
Confidence 3444455999999999999964 69999999999999999999999999987
No 74
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.05 E-value=1.8e-06 Score=68.23 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=41.3
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 407 LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++...+..|..+|.. +|||+..++..||..+||+..||.+||-|
T Consensus 11 ~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqN 54 (69)
T 2l9r_A 11 MSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQN 54 (69)
T ss_dssp CCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchh
Confidence 688999999999987 49999999999999999999999999976
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=97.82 E-value=4.1e-06 Score=77.91 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=44.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTG---------------------LS~sQVsNWFiN 453 (454)
|.|..|++..+.+|..+|..+ |||+..++..||..++ ||..||.+||.|
T Consensus 117 r~R~~ft~~ql~~Le~~F~~~---~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqN 186 (194)
T 1ic8_A 117 RNRFKWGPASQQILFQAYERQ---KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFAN 186 (194)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH---CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchh
Confidence 334459999999999999985 9999999999999999 999999999987
No 76
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.71 E-value=1.2e-05 Score=63.28 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 411 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 411 Av~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
...+|...|..+ ++||+..++..||.++||+..||..||-|
T Consensus 11 ~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 11 PNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp HHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 367888877432 69999999999999999999999999976
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=5.4e-05 Score=61.28 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 409 ERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 409 KeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
|+...+|++.|..+ |||+.+|...||..+||++..|.-||-|
T Consensus 14 k~ql~~Lk~yF~~n---~~Ps~eei~~LA~~lgL~~~VVrVWFqN 55 (71)
T 2da7_A 14 KDHMSVLKAYYAMN---MEPNSDELLKISIAVGLPQEFVKEWFEQ 55 (71)
T ss_dssp THHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 56688999999985 9999999999999999999999999987
No 78
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.48 E-value=0.062 Score=43.45 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=38.6
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccccc
Q 012889 407 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY 452 (454)
Q Consensus 407 LPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFi 452 (454)
.|+...++|++.|.+| -...+++...|+.+++++-.||..||+
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 4677788999999997 668899999999999999999999995
No 79
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=56.70 E-value=79 Score=25.73 Aligned_cols=72 Identities=7% Similarity=0.096 Sum_probs=50.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012889 286 QKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKA 358 (454)
Q Consensus 286 q~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~QI~~~~~~ 358 (454)
-.--.++++++.|+|.||.....++...+..|-...|.-.+.+=- -.++.|.+.|..++.---..|..+.++
T Consensus 17 P~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~-~~l~~I~~~~~~~~~l~dEKv~lA~~~ 88 (104)
T 4afl_A 17 PFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKL-ALLKQIQEAYGKCKEFGDDKVQLAMQT 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567899999999999999999999888887655533232222 234778877777776666666666543
No 80
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=53.25 E-value=49 Score=34.62 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=43.8
Q ss_pred CchhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSR 339 (454)
Q Consensus 278 ss~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSr 339 (454)
+..++..+|.+.+||. .+|+|+++|.+--..-++.++..= .|+|.|++-.+.+.+|+..+.
T Consensus 356 s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~ 429 (543)
T 1we3_A 356 SEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIK 429 (543)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhh
Confidence 4557788888888885 366666666665555555555543 699999999998888887764
No 81
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=44.30 E-value=37 Score=29.92 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHHH
Q 012889 280 LEFMELQKRKTKLLSMLEEVDRRYRHY---CDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQ 351 (454)
Q Consensus 280 ~er~elq~KKtKLLsMLdEVdrRYrqY---~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~Q 351 (454)
.|-++|+.+-.....=|.+.+.++++- .+++...+.++....+. ..|||.+....|++..+.|++-|...
T Consensus 45 eEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~--~npYT~it~~~l~~~W~~l~~li~~R 117 (129)
T 1wlx_A 45 EEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSG--SNPYTTVTPQIINSKWEKVQQLVPKR 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSS--SCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC--CCCCccchHHHHHHHHHHHHHHHHHH
Confidence 466788888889999999999999886 57888888888754443 34999998999999999999888543
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=42.60 E-value=26 Score=27.24 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=29.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccccc
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY 452 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFi 452 (454)
+++++.++.+.......++... . ....+|+++|++...|.+|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g--~------s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG--E------SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT--C------CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--C------CHHHHHHHHCcCHHHHHHHHH
Confidence 3455678877754443444332 2 256889999999999999964
No 83
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=37.77 E-value=59 Score=34.16 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=43.2
Q ss_pred CchhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHH
Q 012889 278 CSLEFMELQKRKTKLL-------------SMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAM 337 (454)
Q Consensus 278 ss~er~elq~KKtKLL-------------sMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlram 337 (454)
+..+|..||.+.+||. ..|+|+++|.+--..-++.++..= .|+|.|++-.+.+.+|+..
T Consensus 357 s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~ 428 (547)
T 1kp8_A 357 SDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADL 428 (547)
T ss_dssp SHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTC
T ss_pred chhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHH
Confidence 4567888999999985 367777777766666666655553 7999999888877777654
No 84
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.67 E-value=89 Score=24.97 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012889 281 EFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEA 319 (454)
Q Consensus 281 er~elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~ 319 (454)
|-..+...++.|-.-|.|++.||..=..+++..++..|.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~ 40 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQD 40 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999999999883
No 85
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=33.32 E-value=86 Score=25.52 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHHHHHhhhhccCCchhhhHH-HHHHHHHHHhhhHHH
Q 012889 284 ELQKRKTKLLSMLEEVDRRYRHYCD------------QMKAVVSSFEAVAGNGAARVYSA-LASKAMSRHFRCLRD 346 (454)
Q Consensus 284 elq~KKtKLLsMLdEVdrRYrqY~~------------Qmq~VvssFe~vAG~gaA~~Yta-lAlramSrhFr~Lrd 346 (454)
++..+=.+...++.+++++++.|.. .+..+-..|..+-.++--|.-.| -|.-.|.||.|.|-.
T Consensus 26 ~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhirrLD~ 101 (104)
T 4afl_A 26 LMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDT 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566777888888899888873 56667778887666665565543 667779999998853
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.56 E-value=29 Score=22.44 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 406 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 406 gLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
.++++....+...+.+. + ....+|+.+|++..-|.+|...
T Consensus 5 ~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46666553333333332 2 2568999999999999999754
No 87
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=32.43 E-value=39 Score=27.31 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=34.3
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCcccccccccC
Q 012889 402 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIYV 453 (454)
Q Consensus 402 RprRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFiN 453 (454)
++++.++.+-+.-+..++.++ +.++. ..+|+..|++...|.+|..+
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~---g~~~~---~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEEN---PDLRK---GEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHC---TTSCH---HHHHHHHTCCHHHHHHHHHT
T ss_pred CcceeCCHHHHHHHHHHHHHC---CCCcH---HHHHHHhCCCHHHHHHHHhc
Confidence 356679999887777777554 65543 36889999999999999643
No 88
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.72 E-value=36 Score=26.51 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccccc
Q 012889 411 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY 452 (454)
Q Consensus 411 Av~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFi 452 (454)
.+..+..|+.+|...|-++. ..||+..|++...+...|.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHH
Confidence 45677889999987754554 4689999999888877663
No 89
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=28.43 E-value=1.4e+02 Score=23.96 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=34.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhc--CCCCCCHHHH----HHHHHHhCCCccccc-ccccCC
Q 012889 401 WRPQRGLPERSVSVLRAWLFEHF--LHPYPSDVDK----HILARQTGLSRSQVC-PTIYVF 454 (454)
Q Consensus 401 ~RprRgLPKeAv~ILRaWL~eH~--~hPYPSeeEK----~~LA~qTGLS~sQVs-NWFiNf 454 (454)
+|.++.+..+.-..|-.|+.+.. .-| |+...- ..|+.+.|++...++ .|+.+|
T Consensus 67 kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F 126 (131)
T 1hlv_A 67 KTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRF 126 (131)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 34455578888999999998754 445 776554 356666777644443 466554
No 90
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=26.09 E-value=2.7e+02 Score=24.90 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 012889 282 FMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQIQATKKAM 359 (454)
Q Consensus 282 r~elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSrhFr~LrdaI~~QI~~~~~~l 359 (454)
..+.+..+.+|...++||-.|-+.|.++++.++. +|+-=-=+.+.-++..||..+...+...++.|
T Consensus 94 ~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~------------~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 94 SKELQAAQARLGADMEDVRGRLVQYRGEVQAMLG------------QSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4577888999999999999999999999997543 23332333455556667777766666555543
No 91
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=23.35 E-value=1.5e+02 Score=30.54 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---hhccCCchhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhCCC
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFE---AVAGNGAARVYSALASKAMSRHFRCLR----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe---~vAG~gaA~~YtalAlramSrhFr~Lr----daI~~QI~~~~~~lge~ 362 (454)
+|+|++|| .+|-|..|-+..+ .|+|.|++-.+.+.+|+..++...... +++.+-|....+.|.++
T Consensus 368 ~l~E~kr~---i~DAl~~~r~a~~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~N 439 (512)
T 3iyg_Q 368 LMDDIERA---VDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAEN 439 (512)
T ss_pred HHHHHHHH---HHHHHHHHHHHHhCCCEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555 5566777777776 689999999998888888765433222 33444455555566655
No 92
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=23.35 E-value=1.5e+02 Score=30.51 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---hhccCCchhhhHHHHHHHHHH
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFE---AVAGNGAARVYSALASKAMSR 339 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe---~vAG~gaA~~YtalAlramSr 339 (454)
+|+|++||.+ |-|..|-+.++ .|+|.|++-...+.+|+..++
T Consensus 334 ~l~E~er~l~---Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~ 378 (500)
T 3aq1_B 334 VVDSLDHALN---DALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYAS 378 (500)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhh
Confidence 3466666655 44444444554 589999999888888887764
No 93
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=23.31 E-value=1.4e+02 Score=30.93 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHH
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSR 339 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSr 339 (454)
+|+|++||.+--..-++.++..=-.|+|.|++-...+.+|+..++
T Consensus 381 ~l~E~er~l~DAl~~~r~a~~~~~ivpGGGa~e~~~s~~L~~~~~ 425 (543)
T 1a6d_B 381 VVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQ 425 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccCCccHHHHHHHHHHHHHhh
Confidence 346666665544444444333322589999998888888887765
No 94
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=22.07 E-value=1.7e+02 Score=30.47 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhccCCchhhhHHHHHHHHHHH
Q 012889 296 LEEVDRRYRHYCDQMKAVVSSFE---AVAGNGAARVYSALASKAMSRH 340 (454)
Q Consensus 296 LdEVdrRYrqY~~Qmq~VvssFe---~vAG~gaA~~YtalAlramSrh 340 (454)
|+|++||.+ |-|..|-+..+ .|+|.|++-...+.+|+..++.
T Consensus 384 l~E~er~l~---DAl~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~ 428 (548)
T 1q3q_A 384 IDEVERALE---DAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQ 428 (548)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhh
Confidence 466666554 55555555555 5899999998888888877654
No 95
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.99 E-value=51 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 012889 283 MELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEA 319 (454)
Q Consensus 283 ~elq~KKtKLLsMLdEVdrRYrqY~~Qmq~VvssFe~ 319 (454)
..++.+++.|..-|.|++.||..=..+++.+++..|+
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~ 51 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKER 51 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477789999999999999999999999999999884
No 96
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=21.31 E-value=1.7e+02 Score=30.61 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hhccCCchhhhHHHHHHHHHHH
Q 012889 299 VDRRYRHYCDQMKAVVSSFE---AVAGNGAARVYSALASKAMSRH 340 (454)
Q Consensus 299 VdrRYrqY~~Qmq~VvssFe---~vAG~gaA~~YtalAlramSrh 340 (454)
++++-|..+|-|..|-+..+ .|+|.|++-...+.+|+..++.
T Consensus 395 l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~ 439 (559)
T 3p9d_A 395 LDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATT 439 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcc
Confidence 33344445667777777777 6899999998888888877654
No 97
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=21.22 E-value=1.7e+02 Score=30.45 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhHHHHHHHHHH
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSR 339 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe~vAG~gaA~~YtalAlramSr 339 (454)
+|+|++||.+--..-++.++..=-.|+|.|++-...+.+|+..++
T Consensus 380 ~l~E~kr~l~DAl~~~r~a~~~g~iVpGGGa~e~~~~~~L~~~~~ 424 (545)
T 1a6d_A 380 VVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYAN 424 (545)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhh
Confidence 456666665544444444333322589999999888888887765
No 98
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=20.84 E-value=69 Score=23.01 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=29.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccccc
Q 012889 404 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY 452 (454)
Q Consensus 404 rRgLPKeAv~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFi 452 (454)
++.++.+-..-....+... ++.......+|++.|++...|.+|..
T Consensus 3 r~~ys~efK~~~~~~~~~g----~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND----NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC----TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC----CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4557776655444444332 22112356899999999999999964
No 99
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.09 E-value=52 Score=25.80 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCccccccccc
Q 012889 411 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVCPTIY 452 (454)
Q Consensus 411 Av~ILRaWL~eH~~hPYPSeeEK~~LA~qTGLS~sQVsNWFi 452 (454)
.+..+.+|+.+|...| ++ ...||+..|++...+...|.
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk 40 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQ 40 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHH
Confidence 4556779999998777 34 45689999999888776653
No 100
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=20.05 E-value=1.9e+02 Score=29.89 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---hhccCCchhhhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhCCC
Q 012889 295 MLEEVDRRYRHYCDQMKAVVSSFE---AVAGNGAARVYSALASKAMSRHFRCLR----DGIVGQIQATKKAMGEK 362 (454)
Q Consensus 295 MLdEVdrRYrqY~~Qmq~VvssFe---~vAG~gaA~~YtalAlramSrhFr~Lr----daI~~QI~~~~~~lge~ 362 (454)
+|+|++|| .+|-|..|-+..+ .|+|.|++-.+.+.+|+..++...... +++..-|....+.|.++
T Consensus 372 ~l~E~kr~---i~DAl~~~r~~v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~N 443 (515)
T 3iyg_H 372 FMEETERS---LHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDN 443 (515)
T ss_pred HHHHHHHH---HHHHHHHHHHHhhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555554 5566777777776 589999999988888887765433222 23344445555555555
Done!