BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012890
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 198/361 (54%), Gaps = 21/361 (5%)
Query: 107 EAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSS-IQTRSKAHGIIKRMLASLGDPYTRF 165
EAW+ V+ +++D + Q+W + RE L + R++ + I+++LA L DP+TRF
Sbjct: 11 EAWRAVDRAYVD---KSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKLLAVLDDPFTRF 67
Query: 166 LSPAEFSKMARYDMSGI-GINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVN 224
L P+ + + R + G+ L D + VL GPA AG R GD ++ V+
Sbjct: 68 LEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVD 127
Query: 225 GVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGP--IESIQVQRQLVARTPVFY----- 277
G V+G S ++VS LLQG +++ V + V H P ++Q+ RQ V PV +
Sbjct: 128 GTAVKGLSLYDVSDLLQGEADSQVEV-VLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSN 186
Query: 278 ---RLEHLDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQA 334
+GY+RL FN+ A L G + +LD+R+N GGL A
Sbjct: 187 VAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRNNGGGLFPA 246
Query: 335 GIEIAKLFLNEGETITYTVGRDPQYQKTIV-ADNSPLVTA-PVIVLVNNRTASASEIVAS 392
G+ +A++ ++ G+ + D Q + I AD + + +A P++VLVN TASASE++A
Sbjct: 247 GVNVARMLVDRGDLVLIA---DSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAG 303
Query: 393 ALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPDYRNL 452
AL D+ R ++ GE+TFGKGLIQ+V +L DGSGV VT+ +Y TP +DIN G+ PD +
Sbjct: 304 ALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLD 363
Query: 453 P 453
P
Sbjct: 364 P 364
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 107 EAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSS-IQTRSKAHGIIKRMLASLGDPYTRF 165
EAW+ V+ +++D + Q+W + RE L R++ + I++ LA L DP+TRF
Sbjct: 11 EAWRAVDRAYVD---KSFNGQSWFKLRETYLKKEPXDRRAQTYDAIRKXLAVLDDPFTRF 67
Query: 166 LSPAEFSKMARYDMSGI-GINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVN 224
L P+ + + R + G+ L D + VL GPA AG R GD ++ V+
Sbjct: 68 LEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVD 127
Query: 225 GVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGP--IESIQVQRQLVARTPVFY----- 277
G V+G S ++VS LLQG +++ V + V H P ++Q+ RQ V PV +
Sbjct: 128 GTAVKGXSLYDVSDLLQGEADSQVEV-VLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSN 186
Query: 278 ---RLEHLDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQA 334
+GY+RL FN+ A L G + +LD+R+N GGL A
Sbjct: 187 VAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRNNGGGLFPA 246
Query: 335 GIEIAKLFLNEGETITYTVGRDPQYQKTIV-ADNSPLVTA-PVIVLVNNRTASASEIVAS 392
G+ +A+ ++ G+ + D Q + I AD + + +A P++VLVN TASASE++A
Sbjct: 247 GVNVARXLVDRGDLVLIA---DSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAG 303
Query: 393 ALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPDYRNL 452
AL D+ R ++ GE+TFGKGLIQ+V +L DGSGV VT+ +Y TP +DIN G+ PD +
Sbjct: 304 ALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLD 363
Query: 453 P 453
P
Sbjct: 364 P 364
>pdb|3K50|A Chain A, Crystal Structure Of Putative S41 Protease (Yp_211611.1)
From Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
Length = 403
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 128/328 (39%), Gaps = 42/328 (12%)
Query: 116 FLDTGRHRWTP----QNWQRKREDILSSSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEF 171
+ +TGR W Q + R+ ++ K +K+ +AS + +++ S +
Sbjct: 10 YPETGRDIWIDSVXRQEYLWYRDXPSPAAPDYFQKPEAFLKKAVASXDNGFSKIDSLLD- 68
Query: 172 SKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGK 231
+ Y G L +V D + + ++ PA AG+++G + NG + K
Sbjct: 69 EPIPSY---GFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIXXXNGDYITKK 125
Query: 232 SAFEVSSLLQGPSETFVTIEVKH---------GNCGPI--ESIQVQRQLVARTPVFYRLE 280
S LLQG + K G PI + R LV + PV +R E
Sbjct: 126 VE---SELLQGSTRQLQIGVYKEVVGEDGEVTGGVVPIGETTXPASRSLVDK-PV-HRFE 180
Query: 281 HLDNGTTSVGYMRLKEFNA-------LARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQ 333
+ VGY+ EF A DL A + Q G + F+LDLR N GG +
Sbjct: 181 IIPWNGKKVGYLXYNEFKAGPTTDSQAYNDDLRRAFRDFQTGGVNEFVLDLRYNTGGSLD 240
Query: 334 AGIEIAKLFLNEGET------ITYTVGR-----DPQYQKTIVADNSPLVTAPVIVLVNNR 382
+ + + Y+ R D + ++ + L + V VL N
Sbjct: 241 CAQLLCTXLAPADKXNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNA 300
Query: 383 TASASEIVASALHDNCRAVLVGEKTFGK 410
T A+E V + L+ + VL+G KT G+
Sbjct: 301 TRGAAEXVINCLNPYXKVVLIGTKTAGE 328
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ D G+ +L GPA +G +++GD++L+VNG+D+RG S + ++
Sbjct: 14 TGLGFNIVGGEDGEGIFVSFILA---GGPADLSGELQRGDQILSVNGIDLRGASHEQAAA 70
Query: 239 LLQGPSETFVTI 250
L+G +T I
Sbjct: 71 ALKGAGQTVTII 82
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ D G+ +L GPA +G +R+GD++L+VNGVD+R S + +
Sbjct: 318 TGLGFNIVGGEDGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 374
Query: 239 LLQGPSETFVTI 250
L+ +T I
Sbjct: 375 ALKNAGQTVTII 386
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ D G+ +L GPA +G +R+GD++L+VNGVD+R S + +
Sbjct: 25 TGLGFNIIGGEDGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 81
Query: 239 LLQGPSETFVTI 250
L+ +T I
Sbjct: 82 ALKNAGQTVTII 93
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ D G+ +L GPA +G +R+GD++L+VNGVD+R S + +
Sbjct: 25 TGLGFNIVGGEDGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 81
Query: 239 LLQGPSETFVTI 250
L+ +T I
Sbjct: 82 ALKNAGQTVTII 93
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 207 GPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGP 259
GPA AG+ GD ++ VNG V GK+ +V +L+Q S+T + + V + GP
Sbjct: 72 GPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQN-SDTTLELSVMPKDSGP 123
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 207 GPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTI 250
G A AGVR+GD +L VNGV+V G + +V L++ G E +T+
Sbjct: 54 GAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 207 GPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTI 250
G A AGVR+GD +L VNGV+V G + +V L++ G E +T+
Sbjct: 54 GAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 203 LILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIES 262
LI G A S G++ GDE++ +NG + + EV +L++ +E V+I+V+H P++S
Sbjct: 117 LIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIR--TEKTVSIKVRHIGLIPVKS 174
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 207 GPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTI 250
G A AGVR+GD +L VNGV+V G + +V L++ G E +T+
Sbjct: 54 GAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 181 GIGINLREVPDANGVVTLKVL--GLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVS 237
GI I EV D+ T + G++ D PAH G ++ GD +L++NG DVR + V
Sbjct: 20 GICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVI 79
Query: 238 SLLQ 241
L++
Sbjct: 80 DLIK 83
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ G+ +L GPA +G +R+GD++L+VNGVD+R S + +
Sbjct: 17 TGLGFNIVGGEXGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 73
Query: 239 LLQGPSETFVTI 250
L+ +T I
Sbjct: 74 ALKNAGQTVTII 85
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 206 DGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG 242
+GPA AGVR GD++L VNGV ++G E L+G
Sbjct: 44 EGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG 80
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ G+ +L GPA +G +R+GD++L+VNGVD+R S + +
Sbjct: 22 TGLGFNIVGGEXGEGIFISFILA---GGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 78
Query: 239 LLQGPSETFVTI 250
L+ +T I
Sbjct: 79 ALKNAGQTVTII 90
>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
Length = 583
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 372 TAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKG 411
+ P+ VL+N + S ++ L DN RA++VG +T G G
Sbjct: 454 SKPICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAG 493
>pdb|3DJA|A Chain A, Crystal Structure Of Cpaf Solved With Mad
pdb|3DJA|B Chain B, Crystal Structure Of Cpaf Solved With Mad
Length = 579
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 372 TAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKG 411
+ P+ VL+N + S ++ L DN RA++VG +T G G
Sbjct: 456 SKPICVLINEQDFSCADFFPVVLKDNDRALIVGTRTAGAG 495
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 206 DGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG 242
+GPA AGVR GD++L VNGV ++G E L+G
Sbjct: 56 EGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG 92
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 203 LILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
++ G A +G+ +GDEVL +NG+++RGK EV LL
Sbjct: 55 IVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS 94
>pdb|3DPN|A Chain A, Crystal Structure Of Cpaf S499a Mutant
pdb|3DPN|B Chain B, Crystal Structure Of Cpaf S499a Mutant
Length = 583
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 372 TAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKG 411
+ P+ VL+N + + ++ L DN RA++VG +T G G
Sbjct: 454 SKPICVLINEQDFACADFFPVVLKDNDRALIVGTRTAGAG 493
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ D G+ +L GPA +G +R+GD +L+VNGV++R + + ++
Sbjct: 23 TGLGFNIVGGEDGEGIFVSFILA---GGPADLSGELRRGDRILSVNGVNLRNATHEQAAA 79
Query: 239 LLQGPSETFVTIEVKH 254
L+ ++ VTI ++
Sbjct: 80 ALKRAGQS-VTIVAQY 94
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 182 IGINLREVPDAN-GVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVR 229
+G N+R + G+ KV I D AH AG+++GD+VLAVN VD +
Sbjct: 29 LGFNIRGGKASQLGIFISKV---IPDSDAHRAGLQEGDQVLAVNDVDFQ 74
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 167 SPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDG-PAHSAGVRQGDEVLAVNG 225
SP E SK+++ + G LR D +G ++ +I +G PA AG+ GD VL +NG
Sbjct: 2 SPRE-SKLSKQEGQNYGFFLRIEKDTDG----HLIRVIEEGSPAEKAGLLDGDRVLRING 56
Query: 226 VDVRGKSAFEVSSLLQ--GPSETFVTIE 251
V V + +V L++ G S T + ++
Sbjct: 57 VFVDKEEHAQVVELVRKSGNSVTLLVLD 84
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 206 DGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251
D PAH AG++ GD + +NGV G + +V L++ S +TIE
Sbjct: 58 DSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS-SGNLLTIE 102
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238
+G+G N+ D G+ +L GPA +G +R+GD +L+VNGV++R + + ++
Sbjct: 26 TGLGFNIVGGEDGEGIFVSFILA---GGPADLSGELRRGDRILSVNGVNLRNATHEQAAA 82
Query: 239 LLQGPSETFVTIEVKH 254
L+ ++ VTI ++
Sbjct: 83 ALKRAGQS-VTIVAQY 97
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNG 225
G G +LR + N + L VL L DGPA +G +R GDE+L +NG
Sbjct: 36 GFGFSLRGGREYN--MDLYVLRLAEDGPAERSGKMRIGDEILEING 79
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 184 INLRE--VPDA-NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVN 224
+ LRE PD +GV+ KV IL PAH AG+R GD +LA+
Sbjct: 23 LQLREPSFPDVQHGVLIHKV---ILGSPAHRAGLRPGDVILAIG 63
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 207 GPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGP 259
G AH AG Q GD VL++NGVDV SLL S T + + GP
Sbjct: 49 GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGP 102
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 200 VLGLILDG-PAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLL 240
VL ++ G PA G+R GD++LAVN ++V+ S +V L+
Sbjct: 26 VLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLI 67
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 206 DGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251
DG A AGV+ GD ++ VNG V + EV L++ S +T++
Sbjct: 38 DGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQ 83
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVD 227
V + V G++ D PA G+ +GD++L VN VD
Sbjct: 23 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD 54
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 207 GPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLL 240
GPA AG+RQGD + VNG V G EV L+
Sbjct: 47 GPASEAGLRQGDLITHVNGEPVHGLVHTEVVELI 80
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSL 239
SG G NL G + + D PA ++G+R D ++ VNGV + GK +V S
Sbjct: 20 SGYGFNLHSDKSKPGQF---IRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA 76
Query: 240 LQG 242
++
Sbjct: 77 IRA 79
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVD 227
V + V G++ D PA G+ +GD++L VN VD
Sbjct: 31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD 62
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 206 DGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETF-VTIEVK 253
D PA GV Q GD V+A+NG+ + E + LL+ S T VT+E++
Sbjct: 46 DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE 95
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 214 VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
++ GD ++ VNGVD+ GKS EV SLL+
Sbjct: 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLR 85
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 170 EFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDV 228
FS +G G+ L D G L V GL+ DGPA G + GD VL +NG
Sbjct: 12 HFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGEST 71
Query: 229 RG 230
+G
Sbjct: 72 QG 73
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVD 227
V + V G++ D PA G+ +GD++L VN VD
Sbjct: 24 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD 55
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 207 GPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTI 250
G A AGV++GD ++ VNG V S EV L++ + +T+
Sbjct: 40 GAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTL 83
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 184 INLRE--VPDA-NGVVTLKVLGLILDGPAHSAGVRQGDEVLAV 223
+ LRE PD +GV+ KV IL PAH AG+R GD +LA+
Sbjct: 244 LQLREPSFPDVQHGVLIHKV---ILGSPAHRAGLRPGDVILAI 283
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 214 VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
++ GD ++ VNGVD+ GKS EV SLL+
Sbjct: 52 LKAGDRLIEVNGVDLAGKSQEEVVSLLR 79
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 206 DGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETF-VTIEVKH 254
D PA GV Q GD V+A+NG+ + E + LL+ S T VT+E++
Sbjct: 55 DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF 105
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 172 SKMARYDMSGIGINLREVPDANGVVTLKVLGLILDG-PAHSAGVRQGDEVLAVNGVDVRG 230
SK+++ + G LR D +G ++ +I +G PA AG+ GD VL +NGV V
Sbjct: 5 SKLSKQEGQNYGFFLRIEKDTDG----HLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 60
Query: 231 KSAFEVSSLLQ--GPSETFVTIE 251
+ +V L++ G S T + ++
Sbjct: 61 EEHAQVVELVRKSGNSVTLLVLD 83
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 206 DGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETF-VTIEVK 253
D PA GV Q GD V+A+NG+ + E + LL+ S T VT+E++
Sbjct: 46 DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE 95
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDE 219
DP+T L P M + SG G NL G + + D PA ++G+R D
Sbjct: 3 DPFT-MLRP-RLCTMKK-GPSGYGFNLHSDKSKPGQF---IRSVDPDSPAEASGLRAQDR 56
Query: 220 VLAVNGVDVRGKSAFEVSSLLQ 241
++ VNGV + GK +V S ++
Sbjct: 57 IVEVNGVCMEGKQHGDVVSAIR 78
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 214 VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
++ GD ++ VNGVD+ GKS EV SLL+
Sbjct: 77 LKAGDRLIEVNGVDLVGKSQEEVVSLLR 104
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 203 LILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256
L+ G A S G+ DEVL VNG++V GKS +V+ ++ S + I V+ N
Sbjct: 72 LVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLI-ITVRPAN 125
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 187 REVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSET 246
R+ PD + ++ +I D PA + G+++ D ++++NG V SA +VS +++ E+
Sbjct: 41 RDFPDV--ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSV--VSANDVSDVIK--RES 94
Query: 247 FVTIEVKHGN 256
+ + V+ GN
Sbjct: 95 TLNMVVRRGN 104
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 166 LSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDG-PAHSAGVRQGDEVLAVN 224
+P E K+++ + G LR D +G ++ +I +G PA AG+ GD VL +N
Sbjct: 12 FNPRE-CKLSKQEGQNYGFFLRIEKDTDG----HLIRVIEEGSPAEKAGLLDGDRVLRIN 66
Query: 225 GVDVRGKSAFEVSSLLQ--GPSETFVTIE 251
GV V + +V L++ G S T + ++
Sbjct: 67 GVFVDKEEHAQVVELVRKSGNSVTLLVLD 95
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR 229
+G+G N+ D G+ +L GPA +G +R+GD +++VN VD+R
Sbjct: 18 TGLGFNIVGGEDGEGIFISFILA---GGPADLSGELRKGDRIISVNSVDLR 65
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFE-VSS 238
SG G NL G + + D PA ++G+R D ++ VNGV + GK + VS+
Sbjct: 20 SGYGFNLHSDKSKPGQF---IRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA 76
Query: 239 LLQGPSET 246
+ G ET
Sbjct: 77 IRAGGDET 84
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFE-VSS 238
SG G NL G + + D PA ++G+R D ++ VNGV + GK + VS+
Sbjct: 15 SGYGFNLHSDKSKPGQF---IRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA 71
Query: 239 LLQGPSETFVTI 250
+ G ET + +
Sbjct: 72 IRAGGDETKLLV 83
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 187 REVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSET 246
R+ PD + ++ +I D PA + G+++ D ++++NG V SA +VS +++ E+
Sbjct: 28 RDFPDV--ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSV--VSANDVSDVIK--RES 81
Query: 247 FVTIEVKHGN 256
+ + V+ GN
Sbjct: 82 TLNMVVRRGN 91
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVD 227
V + V G++ D PA G+ +GD++L VN VD
Sbjct: 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD 82
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 173 KMARYDMSGIGINLREVPDANGVVT------LKVLGLILDGPAHSAG-VRQGDEVLAVNG 225
++A+ D S +GI++ + D GV T + V +I G A S G + +GD VLAVNG
Sbjct: 9 ELAKTDGS-LGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 67
Query: 226 VDVRGKS 232
V + G +
Sbjct: 68 VSLEGAT 74
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 214 VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
V GDE+ VNG ++GK+ EV+ ++Q
Sbjct: 69 VAAGDEITGVNGRSIKGKTKVEVAKMIQ 96
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 198 LKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
L ++ + + PA G V GDE+ VNG ++GK+ EV+ ++Q
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 214 VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
V GDE+ VNG ++GK+ EV+ ++Q
Sbjct: 47 VAAGDEITGVNGRSIKGKTKVEVAKMIQ 74
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 173 KMARYDMSGIGINLREVPDANGVVT------LKVLGLILDGPAHSAG-VRQGDEVLAVNG 225
++A+ D S +GI++ + D GV T + V +I G A S G + +GD VLAVNG
Sbjct: 14 ELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 72
Query: 226 VDVRGKS 232
V + G +
Sbjct: 73 VSLEGAT 79
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 216 QGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252
QGD++L VNG DVR + V++LL+ T VT+EV
Sbjct: 50 QGDQILMVNGEDVRNATQEAVAALLKCSLGT-VTLEV 85
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR 229
+G+G N+ D G+ +L GPA +G +R+GD +++VN VD+R
Sbjct: 15 TGLGFNIVGGEDGEGIFISFILA---GGPADLSGELRKGDRIISVNSVDLR 62
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVD 227
V + V G++ D PA G+ +GD++L VN VD
Sbjct: 26 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD 57
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 208 PAHSAGVRQGDEVLAVNGVDVRGKSAFEV 236
PA +A +R GD ++ VNGV+V G++ +V
Sbjct: 37 PAEAAALRAGDRLVEVNGVNVEGETHHQV 65
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 187 REVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSET 246
R+ PD + ++ +I D PA + G+++ D ++++NG V SA +VS +++ E+
Sbjct: 247 RDFPDV--ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIK--RES 300
Query: 247 FVTIEVKHGN 256
+ + V+ GN
Sbjct: 301 TLNMVVRRGN 310
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 214 VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
V GDE+ VNG ++GK+ EV+ ++Q
Sbjct: 50 VAAGDEITGVNGRSIKGKTKVEVAKMIQ 77
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 187 REVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSET 246
R+ PD + ++ +I D PA + G+++ D ++++NG V SA +VS +++ E+
Sbjct: 247 RDFPDV--ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIK--RES 300
Query: 247 FVTIEVKHGN 256
+ + V+ GN
Sbjct: 301 TLNMVVRRGN 310
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 198 LKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHG 255
L++ L+LDGPA G + GD +++VN V G + +V + Q P V +E+ G
Sbjct: 45 LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104
Query: 256 NCGPIESIQVQRQLVARTPVF 276
P + LV +
Sbjct: 105 YPLPFDPDDPNTSLVTSVAIL 125
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 211 SAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253
+ + GD +LA+N ++GK E LLQ ET VT+++K
Sbjct: 46 TGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET-VTLKIK 87
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 203 LILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256
L+ G A S G+ DEV+ VNG++V GK+ +V+ ++ S + I VK N
Sbjct: 73 LVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLI-ITVKPAN 126
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 203 LILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256
L+ G A S G+ DEV+ VNG++V GK+ +V+ ++ S + I VK N
Sbjct: 45 LVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLI-ITVKPAN 98
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 203 LILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256
L+ G A S G+ DEV+ VNG++V GK+ +V+ ++ S + I VK N
Sbjct: 73 LVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLI-ITVKPAN 126
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 208 PAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG 242
PA AG++ GD ++AV G V G E S +QG
Sbjct: 42 PAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQG 76
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 203 LILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256
L+ G A S G+ DEV+ VNG++V GK+ +V+ ++ S + I VK N
Sbjct: 47 LVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLI-ITVKPAN 100
>pdb|2FNO|A Chain A, Crystal Structure Of A Glutathione S-Transferase (Atu5508)
From Agrobacterium Tumefaciens Str. C58 At 2.00 A
Resolution
pdb|2FNO|B Chain B, Crystal Structure Of A Glutathione S-Transferase (Atu5508)
From Agrobacterium Tumefaciens Str. C58 At 2.00 A
Resolution
Length = 248
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 89 AESEPRQVVAKTNEGIVEEAWQIVNDSFLDTGRHRWTPQNWQ 130
A E R + AK IV +A ++++ L+ GR WTP+ WQ
Sbjct: 102 ATVEGRTLSAK----IVNDANDVLDELTLNGGREXWTPEKWQ 139
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEV 236
D +G+G++L D + +++ V+G+ +GPA + G +R GDE+L +N + G+S
Sbjct: 34 DKNGLGLSLAGNKDRS-RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNA 92
Query: 237 SSLLQ 241
S++++
Sbjct: 93 SAIIK 97
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 321 ILDLRDNLGGL--VQAGIEIAKLFLNEGETITYTVGRDPQYQKTIV 364
++D +N GL V+ K F E ET+ + VGR+PQ K +
Sbjct: 357 VVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLC 402
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 321 ILDLRDNLGGL--VQAGIEIAKLFLNEGETITYTVGRDPQYQKTIV 364
++D +N GL V+ K F E ET+ + VGR+PQ K +
Sbjct: 357 VVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLC 402
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 321 ILDLRDNLGGL--VQAGIEIAKLFLNEGETITYTVGRDPQYQKTIV 364
++D +N GL V+ K F E ET+ + VGR+PQ K +
Sbjct: 357 VVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLC 402
>pdb|3EFV|A Chain A, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3EFV|B Chain B, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3EFV|C Chain C, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3EFV|D Chain D, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2 With Bound
Nad
pdb|3ETF|A Chain A, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
pdb|3ETF|B Chain B, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
pdb|3ETF|C Chain C, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
pdb|3ETF|D Chain D, Crystal Structure Of A Putative Succinate-Semialdehyde
Dehydrogenase From Salmonella Typhimurium Lt2
Length = 462
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 322 LDLRDNLGGLVQAGI-EIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTA 373
DLRD L VQA + E A+L L GE I G Y T++AD +P TA
Sbjct: 313 FDLRDELHQQVQASVAEGARLLLG-GEKIA---GEGNYYAATVLADVTPDXTA 361
>pdb|2JSN|A Chain A, Solution Structure Of The Atypical Pdz-Like Domain Of
Synbindin
Length = 96
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 213 GVRQGDEVLAVNGVDVRGK---SAFEVSSLLQGPSETFVTI 250
G+R G VLA+NG+DV G+ EV L P+ V+I
Sbjct: 46 GIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSI 86
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 198 LKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
L++ L+LDGPA G + GD +++VN V G + +V + Q
Sbjct: 27 LQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 182 IGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
IG+ L+ + NG+ V + PA G+R GD+VL +NG + G S+ + +L+
Sbjct: 18 IGLRLKSID--NGIFVQLVQA---NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK 72
Query: 242 GPSETFVTIEVK 253
+T+ ++
Sbjct: 73 QAFGEKITMTIR 84
>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 219
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 213 GVRQGDEVLAVNGVDVRGK---SAFEVSSLLQGPSETFVTI 250
G+R G VLA+NG+DV G+ EV L P+ V+I
Sbjct: 56 GIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSI 96
>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin
pdb|2ZMV|B Chain B, Crystal Structure Of Synbindin
Length = 227
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 213 GVRQGDEVLAVNGVDVRGKSAF---EVSSLLQGPSETFVTI 250
G+R G VLA+NG+DV G+ EV L P+ V+I
Sbjct: 56 GIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSI 96
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 207 GPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQ-- 264
GPA AG++ GD+++ VNG D+ + + L SE V + V +S+Q
Sbjct: 75 GPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR------QSLQKA 128
Query: 265 VQRQLVARTPV 275
VQ+ +++ T V
Sbjct: 129 VQQSMLSETEV 139
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 183 GINLREVPDANGVVTLKVLGLILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQ 241
G+ + +P N + K+ I G AH G Q GD++LAVN V + + E + L+
Sbjct: 23 GVGNQHIPGDNSIYVTKI---IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK 79
Query: 242 GPSETFVTIEV 252
S+ FV ++V
Sbjct: 80 NTSD-FVYLKV 89
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 182 IGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ 241
IG+ L+ + NG+ V + PA G+R GD+VL +NG + G S+ + +L+
Sbjct: 18 IGLRLKSID--NGIFVQLVQA---NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,182,871
Number of Sequences: 62578
Number of extensions: 483229
Number of successful extensions: 1331
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 126
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)