Query 012890
Match_columns 454
No_of_seqs 303 out of 2714
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 100.0 3E-60 1E-64 485.8 42.8 348 99-453 3-364 (388)
2 1k32_A Tricorn protease; prote 100.0 2.6E-47 8.8E-52 434.5 27.8 329 99-453 658-1009(1045)
3 3k50_A Putative S41 protease; 100.0 3E-46 1E-50 381.6 29.4 295 150-453 48-372 (403)
4 3dor_A Protein CT_858, CPAF; m 100.0 8.4E-33 2.9E-37 287.5 32.7 339 98-453 4-538 (583)
5 1j7x_A IRBP, interphotorecepto 100.0 2.6E-31 8.7E-36 262.7 20.7 168 286-453 105-284 (302)
6 2kom_A Partitioning defective 99.3 4.9E-12 1.7E-16 107.5 7.5 100 157-256 15-120 (121)
7 2koj_A Partitioning defective 99.2 1.1E-11 3.8E-16 103.4 7.9 96 162-257 1-102 (111)
8 2r4h_A Membrane-associated gua 99.2 1.1E-11 3.8E-16 103.8 7.1 98 156-256 10-109 (112)
9 2byg_A Channel associated prot 99.2 1.3E-11 4.5E-16 104.2 6.1 98 158-256 12-114 (117)
10 2edz_A PDZ domain-containing p 99.2 2.1E-12 7.2E-17 108.5 -0.1 93 151-256 5-97 (114)
11 2v90_A PDZ domain-containing p 99.2 1.2E-10 4.2E-15 94.4 10.1 79 179-258 13-91 (96)
12 2jxo_A Ezrin-radixin-moesin-bi 99.1 6.7E-11 2.3E-15 96.3 5.7 91 160-256 3-93 (98)
13 2dm8_A INAD-like protein; PDZ 99.1 4.3E-11 1.5E-15 100.6 4.6 97 159-257 6-104 (116)
14 3l4f_D SH3 and multiple ankyri 99.1 1.3E-10 4.4E-15 100.2 7.4 99 157-256 16-124 (132)
15 2iwq_A Multiple PDZ domain pro 99.1 1.3E-10 4.4E-15 99.0 6.8 98 157-256 14-119 (123)
16 2he4_A Na(+)/H(+) exchange reg 99.1 5E-10 1.7E-14 89.6 9.9 74 179-256 14-87 (90)
17 1v6b_A Harmonin isoform A1; st 99.1 6.6E-11 2.3E-15 100.0 4.8 96 159-256 3-107 (118)
18 1qau_A Neuronal nitric oxide s 99.1 4.9E-10 1.7E-14 93.5 10.0 81 177-260 10-91 (112)
19 2pkt_A PDZ and LIM domain prot 99.1 4.5E-10 1.5E-14 90.1 9.0 75 180-257 13-87 (91)
20 1wg6_A Hypothetical protein (r 99.1 9.6E-11 3.3E-15 100.3 5.2 98 159-256 10-122 (127)
21 1g9o_A NHE-RF; PDZ domain, com 99.0 6.8E-10 2.3E-14 88.9 9.3 74 180-256 14-87 (91)
22 4amh_A Disks large homolog 1; 99.0 1.3E-09 4.4E-14 90.2 11.2 88 179-267 12-104 (106)
23 2uzc_A Human pdlim5, PDZ and L 99.0 7.7E-10 2.6E-14 88.1 9.5 74 180-256 13-86 (88)
24 2pa1_A PDZ and LIM domain prot 99.0 7.6E-10 2.6E-14 87.9 8.8 75 179-256 11-85 (87)
25 1r6j_A Syntenin 1; PDZ, membra 99.0 3.2E-10 1.1E-14 89.3 6.4 67 178-254 14-80 (82)
26 1wfv_A Membrane associated gua 99.0 8.4E-11 2.9E-15 96.5 3.1 92 163-257 2-97 (103)
27 2vz5_A TAX1-binding protein 3; 99.0 9.7E-10 3.3E-14 95.6 9.9 81 178-258 36-126 (139)
28 1n7e_A AMPA receptor interacti 99.0 8.4E-10 2.9E-14 89.6 8.8 76 179-257 15-91 (97)
29 3cbz_A Dishevelled-2; PDZ doma 99.0 7.1E-10 2.4E-14 92.1 8.0 79 179-257 16-97 (108)
30 2q3g_A PDZ and LIM domain prot 99.0 1E-09 3.4E-14 87.6 8.5 74 180-256 13-86 (89)
31 3b76_A E3 ubiquitin-protein li 99.0 5E-10 1.7E-14 94.6 6.9 96 159-255 13-112 (118)
32 2vsp_A PDZ domain-containing p 99.0 2.1E-10 7.2E-15 92.1 4.4 74 180-257 14-87 (91)
33 2dls_A PDZ-rhogef, RHO guanine 99.0 1.7E-09 5.9E-14 87.1 9.7 73 178-258 17-89 (93)
34 2w4f_A Protein LAP4; structura 99.0 1.5E-09 5.1E-14 87.9 9.1 79 178-257 12-94 (97)
35 2fcf_A Multiple PDZ domain pro 99.0 1.2E-09 4.2E-14 89.5 8.6 89 160-257 4-100 (103)
36 1wi4_A Synip, syntaxin binding 99.0 5.8E-10 2E-14 92.8 6.5 77 180-256 25-105 (109)
37 3khf_A Microtubule-associated 99.0 2E-09 6.7E-14 87.7 9.5 78 179-257 12-94 (99)
38 1ihj_A INAD; intermolecular di 99.0 1.8E-09 6.2E-14 87.7 9.2 78 178-256 15-97 (98)
39 2djt_A Unnamed protein product 99.0 7.5E-10 2.6E-14 91.0 6.9 79 178-257 20-99 (104)
40 2i04_A Membrane-associated gua 99.0 1.8E-09 6.2E-14 85.3 8.9 74 179-254 10-85 (85)
41 2iwo_A Multiple PDZ domain pro 99.0 8.3E-10 2.8E-14 93.5 7.1 80 178-258 34-115 (120)
42 3sfj_A TAX1-binding protein 3; 99.0 2.5E-09 8.6E-14 87.8 9.6 77 178-254 17-103 (104)
43 1kwa_A Hcask/LIN-2 protein; PD 99.0 1.4E-09 4.7E-14 86.9 7.8 73 179-256 12-85 (88)
44 2jil_A GRIP1 protein, glutamat 99.0 2.2E-09 7.6E-14 87.0 9.0 78 179-257 13-93 (97)
45 2db5_A INAD-like protein; PDZ 99.0 1.3E-09 4.3E-14 93.3 7.8 77 179-256 36-115 (128)
46 1x5q_A LAP4 protein; PDZ domai 98.9 2.7E-09 9.1E-14 88.7 9.3 80 177-257 23-106 (110)
47 2eaq_A LIM domain only protein 98.9 9.8E-10 3.4E-14 87.8 6.2 72 180-256 17-89 (90)
48 2jre_A C60-1 PDZ domain peptid 98.9 9.1E-10 3.1E-14 91.2 6.0 79 177-256 22-104 (108)
49 1wh1_A KIAA1095 protein; PDZ d 98.9 1.2E-09 4E-14 93.1 6.7 79 177-257 29-108 (124)
50 1q3o_A Shank1; PDZ, GKAP, pept 98.9 1.2E-09 4.1E-14 90.7 6.6 77 178-255 17-103 (109)
51 2dmz_A INAD-like protein; PDZ 98.9 1.2E-09 4.3E-14 93.4 6.9 79 178-257 25-107 (129)
52 3r0h_A INAD, inactivation-NO-a 98.9 3.4E-09 1.1E-13 97.8 10.3 108 158-265 6-117 (206)
53 1m5z_A GRIP, AMPA receptor int 98.9 3.4E-09 1.2E-13 84.8 8.9 72 180-255 19-90 (91)
54 3bpu_A Membrane-associated gua 98.9 2.2E-09 7.6E-14 85.4 7.7 73 179-256 13-86 (88)
55 2vwr_A Ligand of NUMB protein 98.9 3E-09 1E-13 85.9 8.5 75 179-257 15-90 (95)
56 2opg_A Multiple PDZ domain pro 98.9 4.6E-09 1.6E-13 85.3 9.6 77 179-257 14-91 (98)
57 3id1_A Regulator of sigma E pr 98.9 2.3E-09 8E-14 86.9 7.8 66 198-265 4-70 (95)
58 2eeh_A PDZ domain-containing p 98.9 2.9E-09 9.8E-14 86.9 8.4 75 179-257 21-95 (100)
59 2d90_A PDZ domain containing p 98.9 1.6E-09 5.4E-14 88.8 6.3 75 179-257 16-90 (102)
60 2f5y_A Regulator of G-protein 98.9 3.5E-09 1.2E-13 84.9 8.2 71 179-256 13-83 (91)
61 1rgw_A ZAsp protein; PDZ, cyph 98.9 2.5E-09 8.5E-14 84.4 7.2 74 180-256 11-84 (85)
62 1b8q_A Protein (neuronal nitri 98.9 8.3E-10 2.8E-14 94.3 4.7 80 176-258 16-96 (127)
63 2vsv_A Rhophilin-2; scaffold p 98.9 3.6E-09 1.2E-13 88.0 8.4 72 179-256 33-104 (109)
64 3r68_A Na(+)/H(+) exchange reg 98.9 2.1E-09 7.3E-14 86.7 6.8 73 179-255 15-87 (95)
65 1uep_A Membrane associated gua 98.9 1.2E-09 4E-14 89.9 5.1 77 178-256 18-96 (103)
66 2d92_A INAD-like protein; PDZ 98.9 4.5E-09 1.5E-13 87.1 8.7 77 180-256 26-105 (108)
67 1ujd_A KIAA0559 protein; PDZ d 98.9 9.2E-09 3.1E-13 86.5 10.7 78 179-257 29-110 (117)
68 3kzd_A TIAM-1, T-lymphoma inva 98.9 6E-09 2E-13 84.1 9.1 71 180-254 20-90 (94)
69 1vb7_A PDZ and LIM domain 2; P 98.9 1.6E-09 5.3E-14 87.5 5.7 75 180-257 16-90 (94)
70 2jik_A Synaptojanin-2 binding 98.9 5.4E-09 1.8E-13 85.4 9.0 76 180-256 18-97 (101)
71 3o46_A Maguk P55 subfamily mem 98.9 4.3E-09 1.5E-13 84.6 8.2 73 180-256 15-88 (93)
72 2qg1_A Multiple PDZ domain pro 98.9 3.3E-09 1.1E-13 85.0 7.4 74 179-256 15-89 (92)
73 1ueq_A Membrane associated gua 98.9 4.2E-09 1.4E-13 89.4 8.4 77 178-256 28-106 (123)
74 3suz_A Amyloid beta A4 precurs 98.9 4.3E-10 1.5E-14 114.4 2.6 144 98-257 148-295 (388)
75 1wf7_A Enigma homologue protei 98.9 1.4E-09 4.8E-14 89.3 5.2 76 180-258 15-90 (103)
76 1wi2_A Riken cDNA 2700099C19; 98.9 3.6E-09 1.2E-13 87.0 7.6 74 179-256 26-99 (104)
77 2awx_A Synapse associated prot 98.9 7.5E-09 2.6E-13 85.2 9.4 77 180-257 14-94 (105)
78 2ego_A General receptor for ph 98.9 7.9E-09 2.7E-13 83.6 9.4 76 179-255 15-95 (96)
79 3cyy_A Tight junction protein 98.9 8.5E-09 2.9E-13 82.5 9.4 60 197-257 24-84 (92)
80 1wif_A RSGI RUH-020, riken cDN 98.9 2.3E-09 7.8E-14 91.5 6.3 74 177-255 35-110 (126)
81 2fe5_A Presynaptic protein SAP 98.9 8E-09 2.7E-13 83.1 9.2 77 179-256 13-93 (94)
82 2iwn_A Multiple PDZ domain pro 98.9 3.8E-09 1.3E-13 85.3 7.3 78 178-256 13-93 (97)
83 4fgm_A Aminopeptidase N family 98.9 3E-09 1E-13 113.6 8.6 143 101-258 397-556 (597)
84 1i16_A Interleukin 16, LCF; cy 98.9 1.5E-09 5.2E-14 93.2 5.1 79 178-256 38-118 (130)
85 3axa_A Afadin, nectin-3, prote 98.9 1.2E-08 4.1E-13 84.1 10.3 78 179-257 20-99 (106)
86 1v5l_A PDZ and LIM domain 3; a 98.9 1.8E-09 6.2E-14 88.7 5.3 75 180-257 15-89 (103)
87 2kpk_A Membrane-associated gua 98.9 3.7E-09 1.3E-13 90.6 7.4 75 180-256 29-105 (129)
88 1qav_A Alpha-1 syntrophin (res 98.9 6.9E-09 2.4E-13 82.9 8.5 73 179-254 15-88 (90)
89 2yt7_A Amyloid beta A4 precurs 98.9 5E-09 1.7E-13 85.7 7.8 76 180-255 21-98 (101)
90 2i1n_A Discs, large homolog 3; 98.9 5.4E-09 1.8E-13 85.5 7.9 78 179-257 14-95 (102)
91 2ejy_A 55 kDa erythrocyte memb 98.9 4.5E-09 1.5E-13 85.5 7.2 72 179-255 23-95 (97)
92 1d5g_A Human phosphatase HPTP1 98.9 7.2E-09 2.5E-13 83.7 8.5 76 180-256 16-93 (96)
93 2eeg_A PDZ and LIM domain prot 98.9 2.4E-09 8.2E-14 86.4 5.6 74 180-256 18-91 (94)
94 1wfg_A Regulating synaptic mem 98.9 7.1E-09 2.4E-13 89.1 8.8 78 179-256 47-127 (131)
95 2qkv_A Inactivation-NO-after-p 98.9 7.1E-09 2.4E-13 84.0 8.4 73 178-256 18-91 (96)
96 2kjd_A Sodium/hydrogen exchang 98.8 4E-09 1.4E-13 90.0 7.2 77 178-257 18-94 (128)
97 1wha_A KIAA0147 protein, scrib 98.8 4E-09 1.4E-13 86.9 7.0 79 179-258 17-100 (105)
98 2fne_A Multiple PDZ domain pro 98.8 6.4E-09 2.2E-13 87.6 8.2 77 179-256 35-113 (117)
99 2q9v_A Membrane-associated gua 98.8 3.6E-09 1.2E-13 84.5 6.3 75 179-255 12-88 (90)
100 3ngh_A PDZ domain-containing p 98.8 3.3E-09 1.1E-13 87.5 6.2 59 197-256 27-85 (106)
101 3i4w_A Disks large homolog 4; 98.8 7.3E-09 2.5E-13 85.0 8.2 74 179-256 21-95 (104)
102 2yuy_A RHO GTPase activating p 98.8 4.1E-10 1.4E-14 96.1 0.7 92 160-257 26-121 (126)
103 2l97_A HTRA, putative serine p 98.8 5.3E-09 1.8E-13 90.3 7.5 64 197-265 58-122 (134)
104 2rcz_A Tight junction protein 98.8 1.3E-08 4.4E-13 79.2 9.0 58 197-255 22-80 (81)
105 1uez_A KIAA1526 protein; PDZ d 98.8 6.1E-09 2.1E-13 85.1 7.3 76 178-257 19-94 (101)
106 3qik_A Phosphatidylinositol 3, 98.8 5.6E-09 1.9E-13 84.9 6.9 71 179-254 27-99 (101)
107 3tsv_A Tight junction protein 98.8 7.8E-09 2.7E-13 88.0 8.1 73 180-256 39-112 (124)
108 1v62_A KIAA1719 protein; struc 98.8 6.7E-09 2.3E-13 87.4 7.6 75 180-256 27-102 (117)
109 1wf8_A Neurabin-I; PDZ domain, 98.8 1.1E-08 3.7E-13 84.6 8.7 77 179-256 19-100 (107)
110 3qe1_A Sorting nexin-27, G pro 98.8 9.9E-09 3.4E-13 84.7 8.4 76 180-256 17-102 (107)
111 1va8_A Maguk P55 subfamily mem 98.8 1.1E-08 3.6E-13 85.6 8.5 72 180-257 37-109 (113)
112 1w9e_A Syntenin 1; cell adhesi 98.8 1.8E-08 6.1E-13 90.0 10.5 83 177-266 13-95 (166)
113 1v5q_A GRIP1 homolog, glutamat 98.8 4.5E-09 1.5E-13 89.1 6.0 81 177-257 24-108 (122)
114 2z17_A Pleckstrin homology SEC 98.8 3.3E-09 1.1E-13 87.3 5.0 90 160-252 9-103 (104)
115 2o2t_A Multiple PDZ domain pro 98.8 4.8E-09 1.6E-13 88.1 6.0 78 179-257 31-111 (117)
116 2g5m_B Neurabin-2; spinophilin 98.8 4.6E-09 1.6E-13 87.6 5.9 79 179-258 14-97 (113)
117 2dkr_A LIN-7 homolog B; LIN-7B 98.8 7.7E-09 2.6E-13 83.0 7.0 75 179-256 15-90 (93)
118 3i18_A LMO2051 protein; alpha- 98.8 8.9E-09 3E-13 84.1 7.3 58 197-257 8-66 (100)
119 2kv8_A RGS12, regulator of G-p 98.8 3.1E-09 1.1E-13 83.6 4.3 69 180-255 13-81 (83)
120 1ujv_A Membrane associated gua 98.8 2.1E-08 7.2E-13 81.3 9.4 73 178-257 19-92 (96)
121 1y7n_A Amyloid beta A4 precurs 98.8 5.5E-09 1.9E-13 83.8 5.7 67 179-255 23-89 (90)
122 3nfk_A Tyrosine-protein phosph 98.8 1.4E-08 4.9E-13 83.7 8.4 75 179-255 28-107 (107)
123 2kjp_A Uncharacterized protein 98.8 1.5E-09 5.2E-14 87.3 2.3 57 198-257 3-60 (91)
124 3e17_A Tight junction protein 98.8 1.5E-08 5.3E-13 80.7 8.2 66 181-255 14-80 (88)
125 1um1_A KIAA1849 protein, RSGI 98.8 1.3E-08 4.5E-13 84.4 8.0 77 179-256 18-96 (110)
126 4e34_A Golgi-associated PDZ an 98.8 1.5E-08 5.2E-13 80.2 8.0 73 179-254 13-86 (87)
127 2h2b_A Tight junction protein 98.8 1.5E-08 5.2E-13 83.6 8.2 77 179-257 18-98 (107)
128 2la8_A Inactivation-NO-after-p 98.8 1.1E-08 3.9E-13 84.5 7.3 72 179-256 13-85 (106)
129 2i6v_A General secretion pathw 98.8 1.1E-08 3.7E-13 81.4 6.9 58 197-256 20-78 (87)
130 1uf1_A KIAA1526 protein; PDZ d 98.8 1.5E-08 5.2E-13 86.5 8.2 82 180-265 32-113 (128)
131 2e7k_A Maguk P55 subfamily mem 98.8 1.5E-08 5.1E-13 81.3 7.7 71 178-255 16-87 (91)
132 2dlu_A INAD-like protein; PDZ 98.8 8.8E-09 3E-13 85.7 6.3 74 179-257 25-99 (111)
133 2d8i_A T-cell lymphoma invasio 98.8 1.4E-08 4.8E-13 85.1 7.6 72 181-256 30-101 (114)
134 1x6d_A Interleukin-16; PDZ dom 98.8 6.1E-09 2.1E-13 87.8 5.3 79 178-257 25-104 (119)
135 1uew_A Membrane associated gua 98.8 1.2E-08 4.1E-13 85.4 6.9 78 179-257 21-104 (114)
136 1uit_A Human discs large 5 pro 98.8 2.7E-08 9.2E-13 83.5 9.1 73 180-257 30-102 (117)
137 3hpk_A Protein interacting wit 98.7 2E-08 6.7E-13 85.4 8.1 75 178-255 29-104 (125)
138 2i4s_A General secretion pathw 98.7 2.8E-08 9.7E-13 81.9 8.7 58 197-256 38-96 (105)
139 3egg_C Spinophilin; PP1, serin 98.7 2.2E-08 7.5E-13 90.0 8.6 76 179-255 90-170 (170)
140 2dc2_A GOPC, golgi associated 98.7 2.3E-08 7.9E-13 82.1 8.1 76 178-256 19-95 (103)
141 3k1r_A Harmonin; protein-prote 98.7 2.8E-08 9.6E-13 91.0 9.1 74 179-256 95-168 (192)
142 1nf3_C PAR-6B; semi-CRIB motif 98.7 2.6E-08 8.9E-13 85.1 8.4 77 179-256 41-125 (128)
143 1whd_A RGS3, regulator of G-pr 98.7 3.6E-09 1.2E-13 86.4 2.7 72 178-256 24-95 (100)
144 1y8t_A Hypothetical protein RV 98.7 6E-08 2.1E-12 96.0 12.1 76 178-258 227-304 (324)
145 2gzv_A PRKCA-binding protein; 98.7 3.5E-08 1.2E-12 82.7 8.8 74 179-255 35-109 (114)
146 2zpm_A Regulator of sigma E pr 98.7 6.6E-09 2.3E-13 83.1 4.0 64 198-265 6-69 (91)
147 2cs5_A Tyrosine-protein phosph 98.7 1.1E-08 3.7E-13 86.3 5.5 77 178-256 25-106 (119)
148 1tp5_A Presynaptic density pro 98.7 2.8E-08 9.4E-13 83.7 8.0 74 179-256 24-98 (119)
149 1q7x_A PDZ2B domain of PTP-BAS 98.7 1.2E-08 4E-13 84.4 5.4 78 179-257 19-103 (108)
150 2yub_A LIMK-2, LIM domain kina 98.7 1.6E-08 5.4E-13 85.3 6.2 61 196-257 44-106 (118)
151 3gge_A PDZ domain-containing p 98.7 3.4E-08 1.2E-12 79.5 7.8 73 180-256 16-90 (95)
152 1mfg_A ERB-B2 interacting prot 98.7 4.4E-08 1.5E-12 78.9 8.4 74 181-256 14-93 (95)
153 2eei_A PDZ domain-containing p 98.7 6.3E-09 2.1E-13 85.8 3.3 75 179-257 18-92 (106)
154 2eno_A Synaptojanin-2-binding 98.7 2.2E-08 7.6E-13 84.5 6.6 76 180-256 28-107 (120)
155 2lob_A Golgi-associated PDZ an 98.1 1.9E-09 6.6E-14 90.1 0.0 92 159-253 13-110 (112)
156 2kl1_A YLBL protein; structure 98.7 7.4E-09 2.5E-13 83.7 3.3 58 197-257 6-64 (94)
157 2daz_A INAD-like protein; PDZ 98.7 2.9E-08 9.8E-13 84.3 7.1 77 179-257 35-112 (124)
158 2edp_A Fragment, shroom family 98.7 1.5E-08 5.3E-13 82.6 5.1 74 180-257 21-95 (100)
159 1uju_A Scribble; PDZ domain, c 98.7 1.4E-08 5E-13 84.4 5.1 78 178-256 19-104 (111)
160 1te0_A Protease DEGS; two doma 98.7 6.4E-08 2.2E-12 95.6 10.3 78 179-258 220-305 (318)
161 1uhp_A Hypothetical protein KI 98.7 4.3E-08 1.5E-12 80.9 7.6 77 179-256 18-101 (107)
162 2pzd_A Serine protease HTRA2; 98.7 2.6E-08 9E-13 83.0 6.1 64 197-266 36-99 (113)
163 3soe_A Membrane-associated gua 98.7 1.2E-07 3.9E-12 79.2 9.9 72 179-257 22-94 (113)
164 1x5n_A Harmonin; PDZ domain, u 98.7 4.4E-08 1.5E-12 81.8 7.3 74 178-255 25-98 (114)
165 3gsl_A Disks large homolog 4; 98.6 9.6E-08 3.3E-12 86.9 9.9 78 179-257 15-96 (196)
166 2ehr_A INAD-like protein; PDZ 98.6 5.5E-08 1.9E-12 81.6 7.3 77 179-256 26-110 (117)
167 1ufx_A KIAA1526 protein; PDZ d 98.6 2.4E-08 8.1E-13 82.1 4.9 77 179-256 16-97 (103)
168 2csj_A TJP2 protein; PDZ domai 98.6 2.3E-08 7.7E-13 84.0 4.8 77 178-256 24-104 (117)
169 3rle_A Golgi reassembly-stacki 98.6 7.3E-08 2.5E-12 89.4 8.5 70 196-266 16-86 (209)
170 1n7t_A 99-MER peptide of densi 98.6 4.3E-08 1.5E-12 80.3 6.1 75 180-256 21-101 (103)
171 2qbw_A PDZ-fibronectin fusion 98.6 1.3E-07 4.3E-12 86.4 9.5 69 196-266 24-95 (195)
172 2p3w_A Probable serine proteas 98.6 3.8E-08 1.3E-12 81.9 5.3 64 197-266 36-99 (112)
173 1vae_A Rhophilin 2, rhophilin, 98.6 2E-08 6.9E-13 83.7 3.5 71 179-255 25-95 (111)
174 3stj_A Protease DEGQ; serine p 98.6 8.1E-08 2.8E-12 96.0 8.5 85 179-265 239-331 (345)
175 1p1d_A PDZ45, glutamate recept 98.6 1.2E-07 4E-12 86.9 8.8 81 177-257 15-99 (196)
176 2qt5_A Glutamate receptor-inte 98.6 1.5E-07 5.1E-12 86.4 9.5 76 178-256 17-93 (200)
177 3tsz_A Tight junction protein 98.5 8.3E-08 2.8E-12 97.5 6.9 73 180-256 19-92 (391)
178 1z87_A Alpha-1-syntrophin; pro 98.5 8.6E-08 2.9E-12 91.9 6.1 76 178-256 87-163 (263)
179 1um7_A Synapse-associated prot 98.5 4.4E-08 1.5E-12 81.5 3.1 74 179-256 25-99 (113)
180 2edv_A FERM and PDZ domain-con 98.5 5.2E-08 1.8E-12 78.9 3.0 69 180-256 21-89 (96)
181 2hga_A Conserved protein MTH13 98.5 3E-07 1E-11 78.2 7.9 63 197-266 26-89 (125)
182 3r0h_A INAD, inactivation-NO-a 98.4 3.9E-07 1.3E-11 83.8 8.3 71 180-256 125-196 (206)
183 2krg_A Na(+)/H(+) exchange reg 98.4 3.8E-08 1.3E-12 91.8 1.2 76 178-257 18-94 (216)
184 3rle_A Golgi reassembly-stacki 98.4 2.9E-07 9.8E-12 85.4 7.2 84 180-266 95-180 (209)
185 3gsl_A Disks large homolog 4; 98.4 6.9E-07 2.4E-11 81.1 9.2 77 180-257 111-191 (196)
186 3pv2_A DEGQ; trypsin fold, PDZ 98.4 5.1E-07 1.8E-11 93.4 9.2 78 178-257 256-342 (451)
187 3qo6_A Protease DO-like 1, chl 98.4 3.5E-07 1.2E-11 91.5 7.4 85 179-265 232-330 (348)
188 1p1d_A PDZ45, glutamate recept 98.4 4E-07 1.4E-11 83.3 6.4 76 180-256 119-195 (196)
189 3shw_A Tight junction protein 98.4 4.7E-07 1.6E-11 93.5 7.3 73 180-256 11-84 (468)
190 2qt5_A Glutamate receptor-inte 98.3 1.3E-06 4.4E-11 80.1 9.1 76 180-256 117-195 (200)
191 1lcy_A HTRA2 serine protease; 98.3 6.1E-07 2.1E-11 88.9 6.8 57 197-257 257-313 (325)
192 2xkx_A Disks large homolog 4; 98.3 1.4E-06 4.9E-11 95.2 9.0 88 179-267 69-162 (721)
193 4a8c_A Periplasmic PH-dependen 98.2 1.5E-06 5.1E-11 89.6 7.9 60 197-258 264-324 (436)
194 3num_A Serine protease HTRA1; 98.1 4.4E-07 1.5E-11 90.1 0.0 58 197-258 255-312 (332)
195 3pv2_A DEGQ; trypsin fold, PDZ 98.0 5.5E-06 1.9E-10 85.6 7.4 58 196-256 386-443 (451)
196 4a8c_A Periplasmic PH-dependen 98.0 8E-06 2.7E-10 84.0 7.7 57 197-256 364-420 (436)
197 1ky9_A Protease DO, DEGP, HTRA 98.0 2E-06 7E-11 88.8 2.2 59 197-257 287-346 (448)
198 4fln_A Protease DO-like 2, chl 97.9 1.5E-05 5.3E-10 83.6 7.8 87 179-266 252-355 (539)
199 2xkx_A Disks large homolog 4; 97.8 2.7E-05 9.2E-10 85.1 8.6 73 180-256 318-391 (721)
200 1ky9_A Protease DO, DEGP, HTRA 97.6 1.1E-05 3.7E-10 83.4 0.0 58 197-257 384-441 (448)
201 3suz_A Amyloid beta A4 precurs 97.3 2.9E-05 9.9E-10 78.6 0.0 55 199-254 318-372 (388)
202 1w9e_A Syntenin 1; cell adhesi 97.3 0.00032 1.1E-08 62.0 6.4 63 180-252 100-162 (166)
203 4fln_A Protease DO-like 2, chl 96.5 0.0031 1.1E-07 66.2 6.7 65 197-268 416-480 (539)
204 3viv_A 441AA long hypothetical 90.0 0.94 3.2E-05 41.9 8.3 83 286-395 7-93 (230)
205 1y7o_A ATP-dependent CLP prote 82.9 1.3 4.6E-05 40.5 5.1 82 287-396 45-127 (218)
206 2cby_A ATP-dependent CLP prote 78.1 2.3 7.9E-05 38.5 4.9 70 300-396 39-109 (208)
207 1yg6_A ATP-dependent CLP prote 77.5 2.5 8.7E-05 37.7 4.9 82 287-396 26-108 (193)
208 2f6i_A ATP-dependent CLP prote 73.8 3.4 0.00012 37.7 4.8 70 300-396 51-120 (215)
209 3qwd_A ATP-dependent CLP prote 67.7 6 0.0002 35.7 4.9 81 287-395 27-108 (203)
210 3p2l_A ATP-dependent CLP prote 63.8 7.9 0.00027 34.8 4.9 81 287-395 30-111 (201)
211 1j7x_A IRBP, interphotorecepto 62.7 8.2 0.00028 36.8 5.2 57 102-165 5-65 (302)
212 3bl4_A Uncharacterized protein 54.0 22 0.00074 29.3 5.6 49 286-335 18-69 (124)
213 1tg6_A Putative ATP-dependent 53.6 14 0.00048 35.0 4.9 69 300-395 94-163 (277)
214 3rst_A Signal peptide peptidas 35.6 30 0.001 31.6 4.1 69 302-393 31-100 (240)
215 3arc_Z Photosystem II reaction 30.3 16 0.00054 26.3 0.9 21 46-66 10-30 (62)
216 2j3t_D Trafficking protein par 26.5 90 0.0031 28.3 5.4 50 197-252 46-98 (219)
217 2kln_A Probable sulphate-trans 26.1 74 0.0025 25.5 4.5 65 287-351 14-85 (130)
218 3bf0_A Protease 4; bacterial, 25.0 18 0.00062 38.0 0.6 85 286-394 300-393 (593)
219 1th8_B Anti-sigma F factor ant 23.6 83 0.0028 24.2 4.3 48 287-334 11-60 (116)
220 4f47_A Enoyl-COA hydratase ECH 21.4 1.5E+02 0.005 27.5 6.2 108 287-406 28-145 (278)
221 4dgh_A Sulfate permease family 21.1 2.5E+02 0.0084 22.2 6.9 64 287-351 19-86 (130)
222 1t0p_B ICAM-3, intercellular a 20.2 28 0.00095 26.8 0.6 11 3-13 19-30 (86)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=3e-60 Score=485.83 Aligned_cols=348 Identities=34% Similarity=0.615 Sum_probs=301.8
Q ss_pred cchHHHHHHHHHHHHhhcCcCCCCCCCchhhHHHHHHHhh-ccccChHHHHHHHHHHHHhcCCCCceecChHHhhhhc--
Q 012890 99 KTNEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILS-SSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA-- 175 (454)
Q Consensus 99 ~~~~~~~~~~w~~v~~~y~d~~~~~~~~~dW~~~~e~~~~-~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~~~~-- 175 (454)
.+++++|+++|+.++++|+++. +++.||++++++|++ ...+++.+++.+++.|+++|+|+|+.|++++++..+.
T Consensus 3 ~~~~~~f~~~w~~i~~~y~~~~---~~~~dW~~~~~~y~~~~~~~~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~ 79 (388)
T 1fc6_A 3 TSEQLLFLEAWRAVDRAYVDKS---FNGQSWFKLRETYLKKEPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRG 79 (388)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTT---GGGCCHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHhccc---ccCccHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHh
Confidence 3688999999999999999865 688999999999987 6678899999999999999999999999999876653
Q ss_pred -cCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 176 -RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 176 -~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
.+.+.|+|+.+......++ +++|..|.++|||+++||++||+|++|||+++.++..+++..++++..|+.++|+|.|
T Consensus 80 ~~g~~~giG~~~~~~~~~~~--~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 157 (388)
T 1fc6_A 80 TAGSVTGVGLEITYDGGSGK--DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHA 157 (388)
T ss_dssp SSSSCBBCSEEEEECTTCSS--CEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEE
T ss_pred hcCceEEEEEEEEEeecCCC--cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEe
Confidence 4567899999986300122 6899999999999999999999999999999999877888889999999999999999
Q ss_pred CCCC-CeeEEEeeeeeeeeccceeeeee--------ccCCCCeeEEEEechhhhhHHHHHHHHHHHHHhcCCceeEEccC
Q 012890 255 GNCG-PIESIQVQRQLVARTPVFYRLEH--------LDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGASYFILDLR 325 (454)
Q Consensus 255 ~~~~-~~~~v~l~r~~~~~~~v~~~~~~--------~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIiDLR 325 (454)
++.. ..++++++|..+...++.+.... .+..+++||||+|++|...+.+++.+++.+|+++++++||||||
T Consensus 158 ~g~~~~~~~~~l~r~~i~~~~v~~~~~~~~~~~~~~~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~~~lIlDLR 237 (388)
T 1fc6_A 158 PGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIR 237 (388)
T ss_dssp TTEEEEEEEEEEECBCCCCCCEEEEEECSCCGGGSCTTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTCSEEEEECT
T ss_pred CCCCcceEEEEEEEceeecCceeeeeeccccccccccccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 7632 26778888887776677665421 23446799999999999888899999999999899999999999
Q ss_pred CCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEecCCCCC-CCCCEEEEECCCCCChHHHHHHHHhcCCCeEEEc
Q 012890 326 DNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPL-VTAPVIVLVNNRTASASEIVASALHDNCRAVLVG 404 (454)
Q Consensus 326 ~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~v~VLv~~~TaSaaE~~a~~lk~~~~a~vVG 404 (454)
+|+||.+..+..++++|++++. +.++.+|.+... .+.+..... +++|++||||++|+||||+||++||+++++++||
T Consensus 238 ~N~GG~~~~~~~~~~~f~~~~~-i~~~~~r~~~~~-~~~~~~~~~~~~~pv~VLvn~~taSasEi~a~al~~~~~~~~vG 315 (388)
T 1fc6_A 238 NNGGGLFPAGVNVARMLVDRGD-LVLIADSQGIRD-IYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAG 315 (388)
T ss_dssp TCCCBCHHHHHHHHHHHCSSSE-EEEEEETTEEEE-EEECCSCCSCSSSCEEEEECTTCCTHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCc-EEEEecCCCcee-EEecCCccccCCCCEEEEeCCCCccHHHHHHHHHhhCCCEEEEe
Confidence 9999999999999999999875 666667765432 334444443 7899999999999999999999999999999999
Q ss_pred ccCCCCceeeeEEEcCCCCEEEEEEEEEEcCCCccccCCcccCCeEeCC
Q 012890 405 EKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPDYRNLP 453 (454)
Q Consensus 405 e~T~G~~~~~~~~~L~~g~~l~~t~~~~~~p~g~~~e~~GV~PDi~V~p 453 (454)
++|+|++..|..+.|+||+.+.+|++++++|+|+.+++.||+|||.|.+
T Consensus 316 ~~T~Gkg~~~~~~~L~~g~~l~~t~~~~~~p~G~~~~~~Gi~PDi~v~~ 364 (388)
T 1fc6_A 316 ERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDP 364 (388)
T ss_dssp SCCCCCCEEEEEEECTTSCEEEEEEEEEECTTSCBCTTTCCCCSEECCT
T ss_pred ecCCCCCeeeeEEEcCCCCEEEEEEEEEEcCCCCCccCCCcCCCEEeCC
Confidence 9999999999999999999999999999999999999999999999975
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.6e-47 Score=434.45 Aligned_cols=329 Identities=16% Similarity=0.250 Sum_probs=267.5
Q ss_pred cchHHHHHHHHHHHHhhcCcCCCCCCCchhh-HHHHHHHhh--ccccChHHHHHHHHHHHHhcCCCCceecChHHhhhhc
Q 012890 99 KTNEGIVEEAWQIVNDSFLDTGRHRWTPQNW-QRKREDILS--SSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA 175 (454)
Q Consensus 99 ~~~~~~~~~~w~~v~~~y~d~~~~~~~~~dW-~~~~e~~~~--~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~~~~ 175 (454)
.++.++|+++|+.++++|+++. ++.|| ++++++|.+ ....++++++.++++|+++|+|+|+++. +.++..+.
T Consensus 658 ~~~~~~~~~~~~~~~~~y~~~~----~~~d~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~d~ht~~~-~~~~~~~~ 732 (1045)
T 1k32_A 658 EEFLQMYDEAWKLARDNYWNEA----VAKEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEM-GGTFTDKD 732 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHCSCHH----HHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTTCCSCCCEE-CCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCC----CCCChHHHHHHHHHHhhcccCCHHHHHHHHHHHHHhcCCCcceEC-hhHhcccc
Confidence 4688999999999999999864 57899 999999975 3567899999999999999999999765 44555555
Q ss_pred cCcceeeeEEEEEeeCCCCceEEEEEEEcCC--------ChhhhcC--CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCC
Q 012890 176 RYDMSGIGINLREVPDANGVVTLKVLGLILD--------GPAHSAG--VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSE 245 (454)
Q Consensus 176 ~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~--------spA~~aG--L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g 245 (454)
.+.+.|+|+.+... ++ +++|..|+++ |||+++| |+ ||+|++|||+++.++ .++..+++++.|
T Consensus 733 ~~~~~g~G~~~~~~---~~--~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~--~~~~~~~~~~~g 804 (1045)
T 1k32_A 733 PFRSGRIACDFKLD---GD--HYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAG--SNIYRVLSEKAG 804 (1045)
T ss_dssp CCCCCBCSEEEEEE---TT--EEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTT--BCHHHHHHTTTT
T ss_pred ccccceecEEEEEe---CC--EEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccch--hhHHHhhcCCCC
Confidence 56778999999862 33 6899999998 9999999 99 999999999999988 467889999999
Q ss_pred cEEEEEEEcCCCCCeeEEEeeeeeeeeccceeee-------eeccCCCCeeEEEEechhhhhHHHHHHHHHHHHHhcCCc
Q 012890 246 TFVTIEVKHGNCGPIESIQVQRQLVARTPVFYRL-------EHLDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGAS 318 (454)
Q Consensus 246 ~~v~l~v~r~~~~~~~~v~l~r~~~~~~~v~~~~-------~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~ 318 (454)
+.|+|+|.|++ +..+++++++.. ...++.|+. ...+..+++||||+|++|.....+++.+++.++ ++++
T Consensus 805 ~~v~l~v~r~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~igyi~~~~f~~~~~~~~~~~~~~~--~~~~ 880 (1045)
T 1k32_A 805 TSARIRLSGKG-GDKRDLMIDILD-DDRFIRYRSWVEANRRYVHERSKGTIGYIHIPDMGMMGLNEFYRLFINE--SSYQ 880 (1045)
T ss_dssp SEEEEEEECSS-SCEEEEEEECBS-CCHHHHHHHHHHHHHHHHHHHTTTSEEEEECCCBSHHHHHHHHHHHHHH--TTSS
T ss_pred CEEEEEEECCC-CceEEEEEEEcc-cccchhhhhhhhhcceeEEEecCCCEEEEEECccCchHHHHHHHHHHHh--CCCC
Confidence 99999999976 345567766421 112222110 011234678999999999988888888888765 4799
Q ss_pred eeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEecCCCCCCCCCEEEEECCCCCChHHHHHHHHhcCC
Q 012890 319 YFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVLVNNRTASASEIVASALHDNC 398 (454)
Q Consensus 319 ~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~VLv~~~TaSaaE~~a~~lk~~~ 398 (454)
+||||||+|+||.+..+ ++++|. ++ .+.++..|.+... .+. ...+++|++||||++||||||+||++||+++
T Consensus 881 ~liiDlR~N~GG~~~~~--~~~~~~-~~-~~~~~~~~~~~~~-~~~---~~~~~~~~~vL~~~~taSa~e~~~~~l~~~~ 952 (1045)
T 1k32_A 881 GLIVDVRFNGGGFVSQL--IIEKLM-NK-RIGYDNPRRGTLS-PYP---TNSVRGKIIAITNEYAGSDGDIFSFSFKKLG 952 (1045)
T ss_dssp EEEEECTTCCCBSCHHH--HHHHHT-CB-CCEEEEESSSCCE-EES---TTCBCSEEEEEECTTCCTHHHHHHHHHHHTT
T ss_pred EEEEEcCcCCCCCHHHH--HHhhcc-CC-cEEEEecCCCcee-ecc---ccCCCCCEEEEECCCCccHHHHHHHHHhhcC
Confidence 99999999999999865 477764 33 4667777765533 222 2247899999999999999999999999999
Q ss_pred CeEEEcccCCCCceee--eEEEcCCCCEEEEE-EEEEEcCCCccccCCcccCCeEeCC
Q 012890 399 RAVLVGEKTFGKGLIQ--SVYELHDGSGVVVT-IGKYVTPNHMDINGNGIEPDYRNLP 453 (454)
Q Consensus 399 ~a~vVGe~T~G~~~~~--~~~~L~~g~~l~~t-~~~~~~p~g~~~e~~GV~PDi~V~p 453 (454)
+|+|||++|+| +..+ ..+.|+||+.+.+| ++++++|+|..+++.||+|||+|.+
T Consensus 953 ~~~~vG~~t~G-g~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~Gi~Pdi~v~~ 1009 (1045)
T 1k32_A 953 LGKLIGTRTWG-GVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGVENYGVDPDVEIEY 1009 (1045)
T ss_dssp SEEEEESCCCC-CCEECCCCCBCTTSCEECCCCEEEEETTTBTTTTTTCCCCSEECCC
T ss_pred CEEEEccCCCC-CccccCceEEcCCCCeEEEeeEEEEECCCCCccCCCCccCCEEeCC
Confidence 99999999999 5443 56899999999998 7999999999999999999999975
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=3e-46 Score=381.58 Aligned_cols=295 Identities=23% Similarity=0.296 Sum_probs=223.3
Q ss_pred HHHHHHHhcCCCCceecChHHhhhhccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEcc
Q 012890 150 IIKRMLASLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVR 229 (454)
Q Consensus 150 ~i~~ml~~L~D~Ht~~l~~~~~~~~~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~ 229 (454)
.+..++... |+|.+|+.+..-. .....|+|+.+....+.+....++|..|.++|||++|||++||+|++|||+++.
T Consensus 48 ~f~~l~~~~-D~~fS~i~~~~~~---~~~~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~ 123 (403)
T 3k50_A 48 FLKKAVASM-DNGFSKIDSLLDE---PIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYIT 123 (403)
T ss_dssp HHHHHSCTT-CSSCSEEEECCSS---CCCBCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBC
T ss_pred HHHHhCccc-CCCceeEcccccc---CccccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEcc
Confidence 344444444 9955554443221 223667777776633222212478999999999999999999999999999999
Q ss_pred CCCHHHHHHhhCCCCCcEEEEEEEcCCCCCe----------eEEEeee-eeeeeccceeeeeeccCCCCeeEEEEechhh
Q 012890 230 GKSAFEVSSLLQGPSETFVTIEVKHGNCGPI----------ESIQVQR-QLVARTPVFYRLEHLDNGTTSVGYMRLKEFN 298 (454)
Q Consensus 230 ~~~~~~~~~~l~g~~g~~v~l~v~r~~~~~~----------~~v~l~r-~~~~~~~v~~~~~~~~~~~~~igYi~i~sF~ 298 (454)
++. +..++++ .|++++|++.|++.... .++++.. ..+...|+.+. ..++..+++||||+|++|.
T Consensus 124 ~~~---~~~~l~~-~g~~v~l~v~R~g~~~~~~~~~~~i~~~~~~l~~~r~~~~~pv~~~-~v~~~~~~~iGYI~i~~F~ 198 (403)
T 3k50_A 124 KKV---ESELLQG-STRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPASRSLVDKPVHRF-EIIPWNGKKVGYLMYNEFK 198 (403)
T ss_dssp TTT---GGGGTSC-SCEEEEEEEEEEEC-----CEEEEEEEEEEEECCCBCCCCCSEEEE-EEEEETTEEEEEEEECCBC
T ss_pred chh---HHHHhhC-CCCEEEEEEEeCCcccccccccccccccceEEEeeeeeeeccceee-eeeeeCCCcEEEEEEcccc
Confidence 883 5677888 89999999988764320 1233321 11223343221 1223346799999999997
Q ss_pred h-------hHHHHHHHHHHHHHhcCCceeEEccCCCCCcchHHHHHHHHhcccCCce---EEEEe--cCCcccceEEecC
Q 012890 299 A-------LARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGET---ITYTV--GRDPQYQKTIVAD 366 (454)
Q Consensus 299 ~-------~~~~~l~~~l~~l~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~---~~~~~--~r~~~~~~~~~~~ 366 (454)
. .+.++|+++|++|+++++++||||||+|+||.+..+..++++|++++.. +.+.. +|.+.....+...
T Consensus 199 ~~t~~~~~~~~~~l~~al~~l~~~~~~~lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 278 (403)
T 3k50_A 199 AGPTTDSQAYNDDLRRAFRDFQTGGVNEFVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFN 278 (403)
T ss_dssp CCSSTTCCHHHHHHHHHHHHHHHTTCCEEEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECC
T ss_pred CcccccchhhHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEecc
Confidence 6 4568999999999999999999999999999999999999999998753 56655 4443333333322
Q ss_pred C------CCCCCCCEEEEECCCCCChHHHHHHHHhcCCCeEEEcccCCCCceeeeEEE-cCCCCEEEEEEEEEEcCCCcc
Q 012890 367 N------SPLVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYE-LHDGSGVVVTIGKYVTPNHMD 439 (454)
Q Consensus 367 ~------~~~~~~~v~VLv~~~TaSaaE~~a~~lk~~~~a~vVGe~T~G~~~~~~~~~-L~~g~~l~~t~~~~~~p~g~~ 439 (454)
. .....+|++||||+.|+||||+|+++||+++++++||++|+|++.++..+. +++|+.+++++.++++|+|..
T Consensus 279 ~~~~~~g~~~~~~~~~vL~~~~taSa~E~~~~~l~~~~~~~~iG~~T~G~~~~~~~~~~~~~g~~l~~t~~~~~~~~G~~ 358 (403)
T 3k50_A 279 PELIQSGANLNLSTVYVLTTNATRGAAEMVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILNLVVCNVYNAEEKS 358 (403)
T ss_dssp GGGTTTSCCCCCSEEEEEECTTCCTHHHHHHHHHTTTSEEEEEESCCCCCCEEEEEEECSSSCEEEEEEEEEEECTTSCC
T ss_pred ccccccccccCCCCEEEEECCCCccHHHHHHHHHhhCCCEEEEeecCCCCCeeeeEEEeCCCCcEEEEEEEEEECCCCCC
Confidence 1 233457999999999999999999999999999999999999999888886 788999999999999999999
Q ss_pred ccCCcccCCeEeCC
Q 012890 440 INGNGIEPDYRNLP 453 (454)
Q Consensus 440 ~e~~GV~PDi~V~p 453 (454)
+++.||+|||.|.+
T Consensus 359 ~~~~Gi~PDi~v~~ 372 (403)
T 3k50_A 359 DYATGFKPTYEYNE 372 (403)
T ss_dssp CCTTCCCCSEECCG
T ss_pred ccCCCcCceEEeCC
Confidence 99999999999864
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=100.00 E-value=8.4e-33 Score=287.53 Aligned_cols=339 Identities=17% Similarity=0.246 Sum_probs=229.3
Q ss_pred ccchHHHHHHHHHHHHhhcCcCC----CCCCCch-hhHHHHHHHhhccccChHHHHHHHHHHHHhcCCCCceecChHHhh
Q 012890 98 AKTNEGIVEEAWQIVNDSFLDTG----RHRWTPQ-NWQRKREDILSSSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFS 172 (454)
Q Consensus 98 ~~~~~~~~~~~w~~v~~~y~d~~----~~~~~~~-dW~~~~e~~~~~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~ 172 (454)
....-+.|+.+-++++.+|.... ..+|.-. ..++++.+.......+..+|+..+..+++.++|+|+.+..+..
T Consensus 4 ~~~~~~d~~~l~~l~~~kYap~~wK~~~~g~Dl~~~l~~ir~kl~~e~~~Te~dFq~~L~~~fasl~DGHt~l~~~s~-- 81 (583)
T 3dor_A 4 CKNALQDLSFLEHLLQVKYAPKTWKEQYLGWDLVQSSVSAQQKLRTQENPSTSFCQQVLADFIGGLNDFHAGVTFFAI-- 81 (583)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHSCCCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCCSSCEEEESCC--
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhhccCCcCchhHHHHHHHHHHccCCCCHHHHHHHHHHHHhhcCCCceeEeeccc--
Confidence 34566789999999998887431 1233211 1122333333345678899999999999999999999975521
Q ss_pred hhccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCH--------------HHHHH
Q 012890 173 KMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSA--------------FEVSS 238 (454)
Q Consensus 173 ~~~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~--------------~~~~~ 238 (454)
.+..+|+.+... .+| +++|.++.... ++++.||+|++|||+++.++-. ..+.+
T Consensus 82 -----~~a~~Pf~vki~--iDG--~i~V~dv~~~~----s~I~vGdEIlsING~pv~e~Lek~~~~~Gsn~~a~~~~Al~ 148 (583)
T 3dor_A 82 -----ESAYLPYTVQKS--SDG--RFYFVDIMTFS----SEIRVGDELLEVDGAPVQDVLATLYGSNHKGTAAEESAALR 148 (583)
T ss_dssp -----CEEECSEEEEEC--TTS--CEEEEEECSSC----CSSCTTCEEEEETTEEHHHHHHTTSCTTCCCCHHHHHHHHH
T ss_pred -----ccccCCeEEEEE--ECC--cEEEEeccccc----cCCCCCCEEEEECCccHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 233556666622 234 46776663222 2799999999999999876511 00111
Q ss_pred hh------CC--CCCcEEEEEEEcCCCCCeeEEEeeeee---------------------------e---e----eccc-
Q 012890 239 LL------QG--PSETFVTIEVKHGNCGPIESIQVQRQL---------------------------V---A----RTPV- 275 (454)
Q Consensus 239 ~l------~g--~~g~~v~l~v~r~~~~~~~~v~l~r~~---------------------------~---~----~~~v- 275 (454)
.| .+ .+...++|++++++ +..+++++.-.. + . .+|.
T Consensus 149 ~Lt~R~~~l~~~~p~~~~tlk~~~~~-G~~~~v~~pW~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (583)
T 3dor_A 149 TLFSRMASLGHKVPSGRTTLKIRRPF-GTTREVRVKWRYVPEGVGDLATIAPSIRAPQLQKSMRSFFPKKDDAFHRSSSL 227 (583)
T ss_dssp HHTEEEGGGTCCCCCSEEEEEEECTT-SCEEEEEEECEEECCCSCCHHHHGGGCCCCCC---------------------
T ss_pred HHhhhHHhhccCCCCCceEEEEECCC-CcEEEEEeeeEEcccccccccccCcchhhccccccchhhccccccccccCccc
Confidence 11 11 23347888886543 556665542100 0 0 0000
Q ss_pred --------e-------e--------------------------------eeeec---cCCCC--eeEEEEechhhhh---
Q 012890 276 --------F-------Y--------------------------------RLEHL---DNGTT--SVGYMRLKEFNAL--- 300 (454)
Q Consensus 276 --------~-------~--------------------------------~~~~~---~~~~~--~igYi~i~sF~~~--- 300 (454)
+ + ..-++ +..+. +||||||++|+..
T Consensus 228 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~g~~~w~~~~~~~a~i~~~~~~~~~~~~ig~~ri~~~~~~~~~ 307 (583)
T 3dor_A 228 FYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSVTDGDGKSHKVGFLRIPTYSWQDME 307 (583)
T ss_dssp ------------------------CCSTTCSSCSCCCSSCCSEECCSSSEEEEEEEECSSSCEEEEEEEECCCBCGGGST
T ss_pred cccccChHHHHHHHhhhhccccccccCccccccccCCCCCcccccCCceeeEEEeccccCCCcceeeEEEccccCCcccc
Confidence 0 0 00011 12233 8999999999643
Q ss_pred --------HHHHHHHHHHHHHhcCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEE----e---------------
Q 012890 301 --------ARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYT----V--------------- 353 (454)
Q Consensus 301 --------~~~~l~~~l~~l~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~----~--------------- 353 (454)
+..++.+.+..+. .++++||||+|+|+||++.....++++|.+++-..... .
T Consensus 308 ~~~~~~~~~~~~f~~~~~~~~-~~~~~liid~~~n~gg~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ 386 (583)
T 3dor_A 308 DFDPSGPPPWEEFAKIIQVFS-SNTEALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHRMILTQDEVVDALDWLTLLE 386 (583)
T ss_dssp TCCTTSCCHHHHHHHHHHHHH-HHCSEEEEECCSBCCBCHHHHHHHHHTTCSSCEECCEEEECCCHHHHHHHHHHHHHHT
T ss_pred cccccCCcHHHHHHHHHHHhh-cCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCCCcceeeEEecHHHHHHHHHHHHHH
Confidence 2356776666554 37999999999999999999999999998865211110 0
Q ss_pred ----c--------C---------------------------Ccc--cc--------eEEecCCCCCCCCCEEEEECCCCC
Q 012890 354 ----G--------R---------------------------DPQ--YQ--------KTIVADNSPLVTAPVIVLVNNRTA 384 (454)
Q Consensus 354 ----~--------r---------------------------~~~--~~--------~~~~~~~~~~~~~~v~VLv~~~Ta 384 (454)
. - .+. .. ..+.+.+...|++|++||||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~l~~~~~G~~t~s~p~pl~g~~~i~p~~~~~~~gPvvVLVN~~SA 466 (583)
T 3dor_A 387 NVDTNVESRLALGDNMEGYTVDLQVAEYLKSFGRQVLNCWSKGDIELSTPIPLFGFEKIHPHPRVQYSKPICVLINEQDF 466 (583)
T ss_dssp TCCSHHHHHHHHCSEETTEECCHHHHHHHHHHHHHHHHHHHTTCCSSCSCBCGGGCCEECCCSSCCCCSCEEEEECTTBC
T ss_pred hhhhhhhhhhhccccccccCccHHHHHHHHHHHHHHHHHHhCCCceecCCcccccceeeccCCCccCCCCEEEEECCCCc
Confidence 0 0 000 00 122334456689999999999999
Q ss_pred ChHHHHHHHHhcCCCeEEEcccCCCCceeeeEEEcCCCCEE---EEEEEEEEcCCCccccCCcccCCeEeCC
Q 012890 385 SASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGV---VVTIGKYVTPNHMDINGNGIEPDYRNLP 453 (454)
Q Consensus 385 SaaE~~a~~lk~~~~a~vVGe~T~G~~~~~~~~~L~~g~~l---~~t~~~~~~p~g~~~e~~GV~PDi~V~p 453 (454)
||||+||++||++++|++||++|+|+++.+..+.||||+.+ .+|+.++++|+|..+++.||+|||.|.+
T Consensus 467 SASEifA~aLKd~~ra~lVGe~T~Gkg~vq~~~~Lpdg~~l~~lklT~a~~~tp~G~~ie~~GV~PDI~V~~ 538 (583)
T 3dor_A 467 SCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLTGSLAVREHGAFIENIGVEPHIDLPF 538 (583)
T ss_dssp THHHHHHHHHHHTTCEEEEESCCCCCCSCEEEECCCCSSCEEEEEEECEEEECTTSCBCTTTCCCCSEECCC
T ss_pred cHHHHHHHHHHhCCCEEEEeeCCCCCCceeeEEEcCCCCeEEEEEeeeEEEECCCCCCcCCCCcCCcEEeCC
Confidence 99999999999999999999999999999999999999865 5999999999999999999999999975
No 5
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=99.97 E-value=2.6e-31 Score=262.67 Aligned_cols=168 Identities=25% Similarity=0.327 Sum_probs=137.1
Q ss_pred CCeeEEEEechhhhh-HHHHHHHHHHHHH---hcCCceeEEccCCCCCcchHHHHHHHHhcccCCc--eEEEEecCCccc
Q 012890 286 TTSVGYMRLKEFNAL-ARKDLVTAMKRLQ---DMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGE--TITYTVGRDPQY 359 (454)
Q Consensus 286 ~~~igYi~i~sF~~~-~~~~l~~~l~~l~---~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~--~~~~~~~r~~~~ 359 (454)
+++||||+|++|... ..+++.+++.++. -+++++||||||+|+||++..+..++++|++++. .+.+..+|.+..
T Consensus 105 ~~~igYi~i~~F~~~~~~~~~~~~l~~~~~~~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~ 184 (302)
T 1j7x_A 105 PGNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNS 184 (302)
T ss_dssp TTTEEEEECCCBCCHHHHHHHHHHHHHHTHHHHTTCSEEEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTC
T ss_pred CCCEEEEEEcccCChhhHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCC
Confidence 478999999999865 4566777764321 1579999999999999999999999999998864 355666676554
Q ss_pred ceEEecCCC----C-CCCCCEEEEECCCCCChHHHHHHHHhcCCCeEEEcccCCCCceeeeEEEcCCC-CEEEEEEEEEE
Q 012890 360 QKTIVADNS----P-LVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDG-SGVVVTIGKYV 433 (454)
Q Consensus 360 ~~~~~~~~~----~-~~~~~v~VLv~~~TaSaaE~~a~~lk~~~~a~vVGe~T~G~~~~~~~~~L~~g-~~l~~t~~~~~ 433 (454)
...+.+.+. + .+++||+||||++|+||||+|+++||+++++++||++|+|++..+..+.|+|| ..+.+++.+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~alq~~~~a~vVG~~T~Gk~~~~~~~~L~~g~~~lt~p~~~~~ 264 (302)
T 1j7x_A 185 TDEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAYLMQSLSRATIIGEITSGNLMHSKVFPFGDTQLSVTVPIINFI 264 (302)
T ss_dssp CEEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHHHHHHTTCCEEEESCCCCCCSCEEEEECTTSSEEEEEECEEEE
T ss_pred ceeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHHHHHhCCCEEEEcccCCCCCCCceEEEeCCCcEEEEEEEEEEE
Confidence 333433221 1 25799999999999999999999999999999999999999999999999997 33444458999
Q ss_pred cCCCccccCCcccCCeEeCC
Q 012890 434 TPNHMDINGNGIEPDYRNLP 453 (454)
Q Consensus 434 ~p~g~~~e~~GV~PDi~V~p 453 (454)
+|+|+.+++.||+|||.|.+
T Consensus 265 ~p~G~~~~~~Gi~PDi~v~~ 284 (302)
T 1j7x_A 265 DSNGDYWLGGGVVPDAIVLA 284 (302)
T ss_dssp ETTSCBCCCSCCCCSEECCG
T ss_pred CCCCCccCCcCcCCCeeeCH
Confidence 99999999999999999864
No 6
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.28 E-value=4.9e-12 Score=107.49 Aligned_cols=100 Identities=25% Similarity=0.323 Sum_probs=75.1
Q ss_pred hcCCCCceecChHHhhhhc---cCcceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCC
Q 012890 157 SLGDPYTRFLSPAEFSKMA---RYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGK 231 (454)
Q Consensus 157 ~L~D~Ht~~l~~~~~~~~~---~~~~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~ 231 (454)
.+.|+|+.|+++.+++.+. .....++|+.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 15 ~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~ 94 (121)
T 2kom_A 15 ENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK 94 (121)
T ss_dssp ------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTS
T ss_pred cccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCC
Confidence 5679999999998765542 34567899998763211 011358999999999999999 999999999999999998
Q ss_pred CHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012890 232 SAFEVSSLLQG-PSETFVTIEVKHGN 256 (454)
Q Consensus 232 ~~~~~~~~l~g-~~g~~v~l~v~r~~ 256 (454)
+..++.+++++ +.|+.+.|+|.|++
T Consensus 95 ~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 95 SQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp CHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 77888888876 45889999998864
No 7
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.25 E-value=1.1e-11 Score=103.38 Aligned_cols=96 Identities=26% Similarity=0.376 Sum_probs=76.6
Q ss_pred CceecChHHhhhhc---cCcceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHH
Q 012890 162 YTRFLSPAEFSKMA---RYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEV 236 (454)
Q Consensus 162 Ht~~l~~~~~~~~~---~~~~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~ 236 (454)
||.|+++.+++.+. .....|+|+.+....+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++..++
T Consensus 1 ~s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 1 GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp CCCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHH
T ss_pred CCcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 89999998765532 34567899999863211 011368999999999999999 99999999999999998877888
Q ss_pred HHhhCC-CCCcEEEEEEEcCCC
Q 012890 237 SSLLQG-PSETFVTIEVKHGNC 257 (454)
Q Consensus 237 ~~~l~g-~~g~~v~l~v~r~~~ 257 (454)
..++++ +.|+.+.|+|.|++.
T Consensus 81 ~~~l~~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 81 VSLLRSTKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HHHHHHCCCSSEEEEEEEECCC
T ss_pred HHHHHhCCCCCeEEEEEEeCCC
Confidence 888876 468999999988753
No 8
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=103.81 Aligned_cols=98 Identities=27% Similarity=0.410 Sum_probs=66.1
Q ss_pred HhcCCCCceecChHHhhhhc-cCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCH
Q 012890 156 ASLGDPYTRFLSPAEFSKMA-RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSA 233 (454)
Q Consensus 156 ~~L~D~Ht~~l~~~~~~~~~-~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~ 233 (454)
..+.|+|+.|+++.+..... .....|+|+.+..-.+.+ .+++|..|.++|||+++| |++||+|++|||+++.+++.
T Consensus 10 ~~~~d~~t~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~--~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~ 87 (112)
T 2r4h_A 10 GVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYN--MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKH 87 (112)
T ss_dssp -------------CCEEEEEEECBTTBTSEEEEECGGGT--CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred cCCCCCcccccCCCceEEEEEEcCCCccCEEEeccccCC--CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 45679999999988754432 223468999987522111 368999999999999999 99999999999999999877
Q ss_pred HHHHHhhCCCCCcEEEEEEEcCC
Q 012890 234 FEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 234 ~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++..+++. .|+.++|+|.|++
T Consensus 88 ~~~~~~l~~-~g~~v~l~v~R~~ 109 (112)
T 2r4h_A 88 SRAIELIKN-GGRRVRLFLKRGE 109 (112)
T ss_dssp HHHHHHHHT-TTTEEEEEEECCE
T ss_pred HHHHHHHHc-CCCeEEEEEEeCC
Confidence 777777765 5788999998864
No 9
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.20 E-value=1.3e-11 Score=104.19 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=69.9
Q ss_pred cCCCCceecChHHhhhhc-cCcceeeeEEEEEeeCC---CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCC
Q 012890 158 LGDPYTRFLSPAEFSKMA-RYDMSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKS 232 (454)
Q Consensus 158 L~D~Ht~~l~~~~~~~~~-~~~~~glGi~~~~~~d~---~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~ 232 (454)
..|+|+.|++++++.... .....|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus 12 ~~dp~s~y~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~ 91 (117)
T 2byg_A 12 DLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVT 91 (117)
T ss_dssp --------CEEEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred CCCCcccccCCCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 459999999998765432 12237899998752110 112368999999999999999 9999999999999999888
Q ss_pred HHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 233 AFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 233 ~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..++..+++.. ++.++|+|.|++
T Consensus 92 ~~~~~~~l~~~-g~~v~l~v~R~~ 114 (117)
T 2byg_A 92 HEEAVAILKNT-SEVVYLKVGKPT 114 (117)
T ss_dssp HHHHHHHHHTC-CSEEEEEEEEEE
T ss_pred HHHHHHHHHcC-CCeEEEEEEeCC
Confidence 78888888754 789999998754
No 10
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.18 E-value=2.1e-12 Score=108.49 Aligned_cols=93 Identities=28% Similarity=0.300 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCCceecChHHhhhhccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccC
Q 012890 151 IKRMLASLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRG 230 (454)
Q Consensus 151 i~~ml~~L~D~Ht~~l~~~~~~~~~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~ 230 (454)
++.|+..| |+|+.++.++... ++|+.+... .+..+++|..|.++|||+++||++||+|++|||+++.+
T Consensus 5 ~~~~~~~l-dp~~~~l~~~~~~--------~~G~~l~~~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~ 72 (114)
T 2edz_A 5 SSGMASTF-NPRECKLSKQEGQ--------NYGFFLRIE---KDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 72 (114)
T ss_dssp CCCCCCCC-CCEEEEEECCTTC--------CCSCEEECC---TTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSS
T ss_pred hhhHhhcC-CCEEEEEeCCCCC--------cccEEEEEe---cCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCC
Confidence 44577788 9999999876422 344444431 11135889999999999999999999999999999999
Q ss_pred CCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 231 KSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 231 ~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
+...++..+++.. |+.+.|+|.|++
T Consensus 73 ~~~~~~~~~l~~~-g~~v~l~v~R~~ 97 (114)
T 2edz_A 73 EEHAQVVELVRKS-GNSVTLLVLDGD 97 (114)
T ss_dssp SCHHHHHHHHHHT-CSEEEEEEECHH
T ss_pred CCHHHHHHHHHcC-CCEEEEEEEECC
Confidence 8778888777654 899999998865
No 11
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=94.37 Aligned_cols=79 Identities=29% Similarity=0.364 Sum_probs=66.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~ 258 (454)
..|+|+.+......++..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. |+.+.|+|.|++..
T Consensus 13 ~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 13 PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp TTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CCcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 35889998764332333468999999999999999999999999999999997778888888775 89999999997643
No 12
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.11 E-value=6.7e-11 Score=96.34 Aligned_cols=91 Identities=26% Similarity=0.360 Sum_probs=71.1
Q ss_pred CCCceecChHHhhhhccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHh
Q 012890 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSL 239 (454)
Q Consensus 160 D~Ht~~l~~~~~~~~~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~ 239 (454)
|||+.+.+... .+ .....|+|+.+... .+..+++|..|.++|||+++||++||+|++|||+++.+++..++..+
T Consensus 3 Dp~~~~~~~~~--~l-~~~~~g~G~~~~~~---~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~ 76 (98)
T 2jxo_A 3 DPFTMLRPRLC--TM-KKGPSGYGFNLHSD---KSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA 76 (98)
T ss_dssp CSSCSSCCEEE--EE-ECTTTCCCEEEECC---CSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCccCCcEEE--EE-EeCCCcccEEEEec---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88887765331 11 22346899998762 21225899999999999999999999999999999999766888888
Q ss_pred hCCCCCcEEEEEEEcCC
Q 012890 240 LQGPSETFVTIEVKHGN 256 (454)
Q Consensus 240 l~g~~g~~v~l~v~r~~ 256 (454)
++...++.+.+++.|++
T Consensus 77 l~~~~~~~~~l~v~R~g 93 (98)
T 2jxo_A 77 IRAGGDETKLLVVDRET 93 (98)
T ss_dssp HHTTTTEEEEEECCHHH
T ss_pred HHhCCCcEEEEEEECCc
Confidence 88777788888888754
No 13
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.10 E-value=4.3e-11 Score=100.58 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCCCceecChHHhhhh-ccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHH
Q 012890 159 GDPYTRFLSPAEFSKM-ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEV 236 (454)
Q Consensus 159 ~D~Ht~~l~~~~~~~~-~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~ 236 (454)
.|+|+.|+.+.+.... ......|+|+.+....+.. ...++|..|.++|||+++| |++||+|++|||+++.+++..++
T Consensus 6 ~Dp~s~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 84 (116)
T 2dm8_A 6 SGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTP-LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEA 84 (116)
T ss_dssp CCSSSCCCCTTSCEEEEEECCSSCCCCCCBCCTTSS-CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHH
T ss_pred CCcccCccCCCCEEEEEEEECCCcccEEEeCCCCCC-cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 3999999998865332 2234578898886422111 0268999999999999999 99999999999999999877888
Q ss_pred HHhhCCCCCcEEEEEEEcCCC
Q 012890 237 SSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 237 ~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..+++... +.+.|+|.|++.
T Consensus 85 ~~~l~~~~-~~v~l~v~R~~~ 104 (116)
T 2dm8_A 85 ITALRQTP-QKVRLVVYRDEA 104 (116)
T ss_dssp HHHHHTCC-SEEEEEEECCSS
T ss_pred HHHHHhCC-CeEEEEEEeCCc
Confidence 87777654 799999988754
No 14
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.09 E-value=1.3e-10 Score=100.22 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=75.9
Q ss_pred hcCCCCceecChHHhhhhccCcceeeeEEEEEeeCCCC----------ceEEEEEEEcCCChhhhcCCCCCCEEEeeCCE
Q 012890 157 SLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEVLAVNGV 226 (454)
Q Consensus 157 ~L~D~Ht~~l~~~~~~~~~~~~~~glGi~~~~~~d~~g----------~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~ 226 (454)
.+.|+|+.|..+.+.-.+.+....|+||.+..-.+..+ ..+++|..|.++|||+++||++||+|++|||+
T Consensus 16 ~~~~~~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~ 95 (132)
T 3l4f_D 16 VPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQ 95 (132)
T ss_dssp ---CCSCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSS
T ss_pred ccCCCCCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCE
Confidence 34599999988776444444455789999976432110 01489999999999999999999999999999
Q ss_pred EccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 227 DVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 227 ~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
++.+++..++..+++. .++.+.|+|.+..
T Consensus 96 ~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~ 124 (132)
T 3l4f_D 96 NVVKVGHRQVVNMIRQ-GGNTLMVKVVMVT 124 (132)
T ss_dssp BCTTSCHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred ECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 9999888888888876 6779999998754
No 15
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=98.97 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=67.1
Q ss_pred hcCCCCceecChHHhhhhccCcceeeeEEEEEeeCC-------CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEc
Q 012890 157 SLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDV 228 (454)
Q Consensus 157 ~L~D~Ht~~l~~~~~~~~~~~~~~glGi~~~~~~d~-------~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v 228 (454)
++.|+|+.|++|...... +....++|+.+....+. +...+++|..|.++|||+++| |++||+|++|||+++
T Consensus 14 ~~~d~~s~~~~p~~v~l~-k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v 92 (123)
T 2iwq_A 14 GTENLYFQSMQPRRVELW-REPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDL 92 (123)
T ss_dssp ---------CCCEEEEEC-CCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred ccccCCcccCCCEEEEEE-ecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEC
Confidence 456899999988765433 22346788887642110 011258999999999999999 999999999999999
Q ss_pred cCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 229 RGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 229 ~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.+++..++..++++. +..++|+|.|..
T Consensus 93 ~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 119 (123)
T 2iwq_A 93 RDASHEQAVEAIRKA-GNPVVFMVQSII 119 (123)
T ss_dssp TTCCHHHHHHHHHHC-CSSEEEEEECCC
T ss_pred CCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 997778888888765 448999998754
No 16
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.08 E-value=5e-10 Score=89.62 Aligned_cols=74 Identities=24% Similarity=0.295 Sum_probs=63.3
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+....+ ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..+.|++.|.+
T Consensus 14 ~~g~G~~~~~~~~---~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 87 (90)
T 2he4_A 14 PQGYGFNLHSDKS---RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPS 87 (90)
T ss_dssp TTBCCEEEEECSS---SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCC
T ss_pred CCCccEEEEccCC---CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccC
Confidence 3589999876322 2258999999999999999999999999999999999878888888876 889999998865
No 17
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.08 E-value=6.6e-11 Score=100.02 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCCCceecChHHhh-----hhccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCC
Q 012890 159 GDPYTRFLSPAEFS-----KMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKS 232 (454)
Q Consensus 159 ~D~Ht~~l~~~~~~-----~~~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~ 232 (454)
.|||+.|.+++ +. ........|+|+.+.--.+... ..++|..|.++|||+++ ||++||+|++|||+++.+++
T Consensus 3 ~dP~s~~~~~~-~~~~~~~~~~~~~~~glG~~i~gg~~~~~-~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~ 80 (118)
T 1v6b_A 3 EGAATMFSPEQ-IAGKDVRLLRIKKEGSLDLALEGGVDSPV-GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80 (118)
T ss_dssp CCCCSSSCHHH-HSSCCEEEEEEESCSCCCCEEEEBTTSSS-CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB
T ss_pred CCCcceecccc-cCCceEEEEEECCCCccCEEEEcccCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 49999985443 32 1111223588998764211111 14899999999999999 89999999999999999988
Q ss_pred HHHHHHhhCCC---CCcEEEEEEEcCC
Q 012890 233 AFEVSSLLQGP---SETFVTIEVKHGN 256 (454)
Q Consensus 233 ~~~~~~~l~g~---~g~~v~l~v~r~~ 256 (454)
.+++.++++.. .|+.++|+|.|..
T Consensus 81 ~~~~~~~l~~~~~~~g~~v~l~v~r~~ 107 (118)
T 1v6b_A 81 LAEAEAALQKAWNQGGDWIDLVVAVCP 107 (118)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence 78877777642 4889999998853
No 18
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.08 E-value=4.9e-10 Score=93.48 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=67.4
Q ss_pred CcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCC-CCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 177 ~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL-~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..+.|+|+.+... .+..+++|..|.++|||+++|| ++||+|++|||+++.+++..++..+++...|+.+.+++.|+
T Consensus 10 ~~~~glG~~~~~~---~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 86 (112)
T 1qau_A 10 RKVGGLGFLVKER---VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG 86 (112)
T ss_dssp BTTTBTSEEEEEC---SSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEEC
T ss_pred CCCCceeEEEEec---CCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEeC
Confidence 3467899998762 2223689999999999999998 99999999999999997668888888877789999999998
Q ss_pred CCCCe
Q 012890 256 NCGPI 260 (454)
Q Consensus 256 ~~~~~ 260 (454)
+....
T Consensus 87 g~~~~ 91 (112)
T 1qau_A 87 PEGFT 91 (112)
T ss_dssp CTTSE
T ss_pred Ccccc
Confidence 75443
No 19
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.07 E-value=4.5e-10 Score=90.08 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=62.6
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.++|+.+..-.+. ..+++|..|.++|||+++||++||+|++|||+++.++...++..+++. .++.+.++|.|++.
T Consensus 13 ~~~G~~l~~~~~~--~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 87 (91)
T 2pkt_A 13 GPWGFRLVGGKDF--EQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEH 87 (91)
T ss_dssp SCCSEEEEEEGGG--TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECC
T ss_pred CCCCEEEEccCCC--CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCc
Confidence 4688888652221 136899999999999999999999999999999999976688888877 78999999998764
No 20
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.06 E-value=9.6e-11 Score=100.34 Aligned_cols=98 Identities=22% Similarity=0.364 Sum_probs=77.5
Q ss_pred CCCCceecChHHhhhh------ccCcceeeeEEEEEeeCCC--CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEcc
Q 012890 159 GDPYTRFLSPAEFSKM------ARYDMSGIGINLREVPDAN--GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR 229 (454)
Q Consensus 159 ~D~Ht~~l~~~~~~~~------~~~~~~glGi~~~~~~d~~--g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~ 229 (454)
.|+|+.|+++.+.+.. .+....|+||.+....+.. +...++|..|.++|||+++| |++||+|++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 4899999998865421 1245678999987533210 12368999999999999999 9999999999999999
Q ss_pred CCCHHHHHHhhCC------CCCcEEEEEEEcCC
Q 012890 230 GKSAFEVSSLLQG------PSETFVTIEVKHGN 256 (454)
Q Consensus 230 ~~~~~~~~~~l~g------~~g~~v~l~v~r~~ 256 (454)
+++..++..+|+. +.++.|+|+|.|+.
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~ 122 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence 9887888888874 35889999998865
No 21
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.05 E-value=6.8e-10 Score=88.94 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=61.4
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.|+|+.+... .+..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++...++.+.+.++|++
T Consensus 14 ~g~G~~~~~~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 87 (91)
T 1g9o_A 14 NGYGFHLHGE---KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET 87 (91)
T ss_dssp TBCCEEEEEC---TTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred CcccEEEEec---CCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence 4799998762 2223689999999999999999999999999999999988788888888776766666677654
No 22
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.05 E-value=1.3e-09 Score=90.21 Aligned_cols=88 Identities=26% Similarity=0.398 Sum_probs=66.1
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~---~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..++||.+.--.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..+.|+|.|
T Consensus 12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R 90 (106)
T 4amh_A 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT-SDFVYLKVAK 90 (106)
T ss_dssp CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSC-CSEEEEEEEC
T ss_pred CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEe
Confidence 46788887641110 011258999999999999999 999999999999999988778877777664 6699999998
Q ss_pred CCC-CCeeEEEeee
Q 012890 255 GNC-GPIESIQVQR 267 (454)
Q Consensus 255 ~~~-~~~~~v~l~r 267 (454)
++. ....++++.+
T Consensus 91 ~~~~~~~~~v~l~~ 104 (106)
T 4amh_A 91 PGSGEKIMEIKLIK 104 (106)
T ss_dssp CSSSCSEEEEEEEC
T ss_pred CCCCCeEEEEEEec
Confidence 763 3344555543
No 23
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.05 E-value=7.7e-10 Score=88.05 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=61.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+..-.+. ...++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. ++.+.++|.|++
T Consensus 13 ~~~G~~l~~g~~~--~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g 86 (88)
T 2uzc_A 13 APWGFRLQGGKDF--NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES 86 (88)
T ss_dssp SCCCEEEEEEGGG--TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CcccEEEECcCCC--CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence 4688888642221 1368999999999999999999999999999999999877777777765 889999998865
No 24
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.03 E-value=7.6e-10 Score=87.94 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=62.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..++|+.+..-.+. ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++... +.+.++|.|++
T Consensus 11 ~~~lG~~l~~~~~~--~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~ 85 (87)
T 2pa1_A 11 PAPWGFRITGGRDF--HTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRIT 85 (87)
T ss_dssp SSCCSEEEEEEGGG--TEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred CCccCEEEecccCC--CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecC
Confidence 35788888752221 23689999999999999999999999999999999977788888887765 88999998875
No 25
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.03 E-value=3.2e-10 Score=89.33 Aligned_cols=67 Identities=24% Similarity=0.437 Sum_probs=58.8
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
...++||.++. + .|..++++|||+++||+.||+|++|||+++.+++.+++.++|+ ..|++|+|+|..
T Consensus 14 ~~g~~Gf~i~~-----g----~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 14 STGHVGFIFKN-----G----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp TTSCCCEEEET-----T----EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred CCCCeEEEEEC-----C----EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 34578998863 3 3789999999999999999999999999999999999999999 789999998864
No 26
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.03 E-value=8.4e-11 Score=96.54 Aligned_cols=92 Identities=26% Similarity=0.396 Sum_probs=70.8
Q ss_pred ceecChHHhhhhc---cCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHH
Q 012890 163 TRFLSPAEFSKMA---RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238 (454)
Q Consensus 163 t~~l~~~~~~~~~---~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~ 238 (454)
+.|+++++++.+. .....|+|+.+....+ ....++|..|.++|||+++| |++||+|++|||+++.+++..++..
T Consensus 2 S~~~~~~~~~~~~v~l~~~~~g~G~~~~~~~~--~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~ 79 (103)
T 1wfv_A 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGRE--YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79 (103)
T ss_dssp CCCCSCCCSCCEECCEECCTTSSSBCCEEETT--TTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHH
T ss_pred CCCCCccCceEEEEEEecCCCcCCEEEecccc--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 4566666654332 2345678998875322 22368999999999999999 9999999999999999987777777
Q ss_pred hhCCCCCcEEEEEEEcCCC
Q 012890 239 LLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 239 ~l~g~~g~~v~l~v~r~~~ 257 (454)
+++ ..++.+.|+|.|++.
T Consensus 80 ~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 80 LIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp HHH-HHCSEECEEEECTTC
T ss_pred HHH-cCCCeEEEEEEECCC
Confidence 776 567899999988764
No 27
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.02 E-value=9.7e-10 Score=95.57 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=65.4
Q ss_pred cceeeeEEEEEeeCC----------CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcE
Q 012890 178 DMSGIGINLREVPDA----------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETF 247 (454)
Q Consensus 178 ~~~glGi~~~~~~d~----------~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~ 247 (454)
...++|+.+....+. +...+++|..|.++|||+++||++||+|++|||+++.+++..++..+++...|+.
T Consensus 36 ~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~ 115 (139)
T 2vz5_A 36 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 115 (139)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSE
T ss_pred CcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCE
Confidence 345889988642110 1123689999999999999999999999999999999877788999998888899
Q ss_pred EEEEEEcCCCC
Q 012890 248 VTIEVKHGNCG 258 (454)
Q Consensus 248 v~l~v~r~~~~ 258 (454)
+.|+|.|++..
T Consensus 116 v~l~v~R~g~~ 126 (139)
T 2vz5_A 116 VRLLVTRQSLQ 126 (139)
T ss_dssp EEEEEEECC--
T ss_pred EEEEEEECCEE
Confidence 99999997643
No 28
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.02 E-value=8.4e-10 Score=89.62 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=62.8
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..++|+.+....+.. ..++|..|.++|||+++| |++||+|++|||+++.+++..++..+++ ..++.+.|+|.|++.
T Consensus 15 ~~~lG~~i~~~~~~~--~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 15 GGPLGITISGTEEPF--DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTD 91 (97)
T ss_dssp TSCCCEEEECCSSTT--SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCCcCEEEEcccCCC--CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 346999987532211 268999999999999999 9999999999999999887788888887 578899999998764
No 29
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.00 E-value=7.1e-10 Score=92.09 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=63.3
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCC--CCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP--SETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~--~g~~v~l~v~r~ 255 (454)
..++|+.+..-.+..+...++|..|.++|||+++| |++||+|++|||+++.+++.+++..+++.. .+..++|+|.|.
T Consensus 16 ~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~ 95 (108)
T 3cbz_A 16 YNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95 (108)
T ss_dssp HCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECC
T ss_pred CCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeC
Confidence 35788888653222223479999999999999999 999999999999999998778888888764 445699999886
Q ss_pred CC
Q 012890 256 NC 257 (454)
Q Consensus 256 ~~ 257 (454)
..
T Consensus 96 ~~ 97 (108)
T 3cbz_A 96 GG 97 (108)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 30
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.00 E-value=1e-09 Score=87.64 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=60.4
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+..-.+ ....++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. ++.+.++|.|++
T Consensus 13 ~~~G~~l~gg~~--~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~ 86 (89)
T 2q3g_A 13 APWGFRLQGGKD--FNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAI 86 (89)
T ss_dssp SCCCEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEEC
T ss_pred CcccEEEECcCC--CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 578888864221 12368999999999999999999999999999999988777777777654 788999998865
No 31
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.00 E-value=5e-10 Score=94.64 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCCceecChHHhhhh--ccCcceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHH
Q 012890 159 GDPYTRFLSPAEFSKM--ARYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAF 234 (454)
Q Consensus 159 ~D~Ht~~l~~~~~~~~--~~~~~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~ 234 (454)
+|+|+.|+.+...+.. .+....++||.+..-.+. .+...++|..|.++|||+++| |++||+|++|||+++.+++..
T Consensus 13 ~~~~~~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~ 92 (118)
T 3b76_A 13 LGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS 92 (118)
T ss_dssp -----CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHH
T ss_pred CCccccccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence 5788888887764432 233357899998752110 122358999999999999999 999999999999999988888
Q ss_pred HHHHhhCCCCCcEEEEEEEcC
Q 012890 235 EVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 235 ~~~~~l~g~~g~~v~l~v~r~ 255 (454)
++..+++.. +..++|+|.|.
T Consensus 93 ~~~~~l~~~-~~~v~L~v~R~ 112 (118)
T 3b76_A 93 EAVALLKRT-SSSIVLKALEV 112 (118)
T ss_dssp HHHHHHHSC-CSEEEEEEEEE
T ss_pred HHHHHHHcC-CCeEEEEEEEC
Confidence 888888765 67799988774
No 32
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.00 E-value=2.1e-10 Score=92.07 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=59.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.++|+.+... .+...++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. |+.++|+|.|++.
T Consensus 14 ~~~G~~l~~~---~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 87 (91)
T 2vsp_A 14 NGYGFHLNAI---RGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKA 87 (91)
T ss_dssp TBTSCCCBCC---TTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC---
T ss_pred CcccEEEEec---cCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCc
Confidence 3678877542 222357899999999999999999999999999999977778998889877 8999999998753
No 33
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.99 E-value=1.7e-09 Score=87.11 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=61.0
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
...++|+.+.. .. .++|..|.++|||+++||++||+|++|||+++.++...++...++ .++.++|+|.|++.
T Consensus 17 ~~~~~G~~l~~---~~---g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 17 DQHGFGFTVSG---DR---IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSSS 88 (93)
T ss_dssp SSSSCCEEEEC---SS---SCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCCC
T ss_pred CCCceeEEEeC---CC---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECCC
Confidence 34578988864 22 588999999999999999999999999999999987667777775 58999999998764
Q ss_pred C
Q 012890 258 G 258 (454)
Q Consensus 258 ~ 258 (454)
+
T Consensus 89 ~ 89 (93)
T 2dls_A 89 G 89 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.99 E-value=1.5e-09 Score=87.95 Aligned_cols=79 Identities=30% Similarity=0.453 Sum_probs=61.9
Q ss_pred cceeeeEEEEEeeCC----CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 178 DMSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 178 ~~~glGi~~~~~~d~----~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
...|+|+.+..-.+. +...+++|..|.++|||+++||++||+|++|||+++.++...+....++. .|+.+.|+|.
T Consensus 12 ~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~ 90 (97)
T 2w4f_A 12 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVW 90 (97)
T ss_dssp BTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEE
T ss_pred CCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCeEEEEEE
Confidence 467899998742110 01236899999999999999999999999999999999876555555554 6899999999
Q ss_pred cCCC
Q 012890 254 HGNC 257 (454)
Q Consensus 254 r~~~ 257 (454)
|++.
T Consensus 91 R~g~ 94 (97)
T 2w4f_A 91 RERE 94 (97)
T ss_dssp CCSS
T ss_pred eCCc
Confidence 9764
No 35
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.98 E-value=1.2e-09 Score=89.52 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=65.9
Q ss_pred CCCceecChHHhhhhccCcceeeeEEEEEeeCCC-------CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCC
Q 012890 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDAN-------GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGK 231 (454)
Q Consensus 160 D~Ht~~l~~~~~~~~~~~~~~glGi~~~~~~d~~-------g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~ 231 (454)
|||+-++.+.. ..++|+.+....+.. ...+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 4 dp~~v~l~~~~--------~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~ 75 (103)
T 2fcf_A 4 QPRRVELWREP--------SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75 (103)
T ss_dssp SCEEEEECCCC---------CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred CCEEEEEEeCC--------CCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCC
Confidence 77877776442 345677765422100 01268999999999999999 999999999999999997
Q ss_pred CHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 232 SAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 232 ~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
+..++..++++..+ .+.|+|.|...
T Consensus 76 ~~~~~~~~l~~~~~-~v~l~v~r~~~ 100 (103)
T 2fcf_A 76 SHEQAVEAIRKAGN-PVVFMVQSIIS 100 (103)
T ss_dssp CHHHHHHHHHTCCS-SEEEEEECCCC
T ss_pred CHHHHHHHHHhCCC-cEEEEEEECCC
Confidence 77888888877644 89999988653
No 36
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.98 E-value=5.8e-10 Score=92.82 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=63.8
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCC---CcEEEEEEEcC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS---ETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~---g~~v~l~v~r~ 255 (454)
.|+||.+.--.+......++|..|.++|||+++| |++||+|++|||+++.+++.+++.++|++.. ++.++|++.|+
T Consensus 25 ~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~ 104 (109)
T 1wi4_A 25 TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104 (109)
T ss_dssp SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECC
T ss_pred CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeC
Confidence 6899998742211111248999999999999999 9999999999999999988889988888766 88999999886
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
+
T Consensus 105 ~ 105 (109)
T 1wi4_A 105 G 105 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 37
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.98 E-value=2e-09 Score=87.71 Aligned_cols=78 Identities=27% Similarity=0.318 Sum_probs=61.9
Q ss_pred ceeeeEEEEEeeCCCCc-----eEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 179 MSGIGINLREVPDANGV-----VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~-----~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
..++||.+....+..+. .+++|..|.++|||+++||++||+|++|||+++.+++..++..+++ ..|+.+.|++.
T Consensus 12 ~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~ 90 (99)
T 3khf_A 12 GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTT 90 (99)
T ss_dssp CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEE
T ss_pred CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEE
Confidence 34678877653221110 2568999999999999999999999999999999877788887777 56899999999
Q ss_pred cCCC
Q 012890 254 HGNC 257 (454)
Q Consensus 254 r~~~ 257 (454)
|++.
T Consensus 91 r~~~ 94 (99)
T 3khf_A 91 ALEN 94 (99)
T ss_dssp CSCS
T ss_pred ECCC
Confidence 8764
No 38
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.97 E-value=1.8e-09 Score=87.67 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=62.6
Q ss_pred cceeeeEEEEEeeCCC----CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEE
Q 012890 178 DMSGIGINLREVPDAN----GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~----g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v 252 (454)
...|+||.+..-.+.. ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.++|+|
T Consensus 15 ~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v 93 (98)
T 1ihj_A 15 GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEI 93 (98)
T ss_dssp TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEE
T ss_pred CCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEE
Confidence 3458899886432211 12368999999999999999 99999999999999999877778777766 688999999
Q ss_pred EcCC
Q 012890 253 KHGN 256 (454)
Q Consensus 253 ~r~~ 256 (454)
.|++
T Consensus 94 ~R~g 97 (98)
T 1ihj_A 94 QTFD 97 (98)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 8864
No 39
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=7.5e-10 Score=91.04 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=63.6
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
...|+|+.+....+..+...++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .++.+.|+|.|++
T Consensus 20 ~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g 98 (104)
T 2djt_A 20 GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPL 98 (104)
T ss_dssp CSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCC
T ss_pred CCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 456899998753221112358999999999999999 99999999999999999877777777765 5889999998876
Q ss_pred C
Q 012890 257 C 257 (454)
Q Consensus 257 ~ 257 (454)
.
T Consensus 99 ~ 99 (104)
T 2djt_A 99 S 99 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.97 E-value=1.8e-09 Score=85.28 Aligned_cols=74 Identities=27% Similarity=0.391 Sum_probs=60.1
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r 254 (454)
..|+|+.+..-. +....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. .|+.+.++|.|
T Consensus 10 ~~g~G~~i~~~~--~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 10 SRGFGFTVVGGD--EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TTBSSEEEEECC--STTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCCEEEEccc--CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 357898886521 122358999999999999999 999999999999999988778888888764 48889888865
No 41
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.97 E-value=8.3e-10 Score=93.52 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=61.7
Q ss_pred cceeeeEEEEEeeC-CCCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 178 DMSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d-~~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
...++||.+..-.+ ..+...++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++.. +.+++|+|.|+
T Consensus 34 ~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 112 (120)
T 2iwo_A 34 PTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAG 112 (120)
T ss_dssp ---CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEECC
T ss_pred CCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 34588988865211 011236899999999999999 9999999999999999998888888888765 55699999987
Q ss_pred CCC
Q 012890 256 NCG 258 (454)
Q Consensus 256 ~~~ 258 (454)
+..
T Consensus 113 g~~ 115 (120)
T 2iwo_A 113 GDV 115 (120)
T ss_dssp TTS
T ss_pred Ccc
Confidence 643
No 42
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.96 E-value=2.5e-09 Score=87.82 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=62.6
Q ss_pred cceeeeEEEEEeeCC----------CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcE
Q 012890 178 DMSGIGINLREVPDA----------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETF 247 (454)
Q Consensus 178 ~~~glGi~~~~~~d~----------~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~ 247 (454)
...++|+.+.--.+. ....+++|..|.++|||+++||++||+|++|||+++.+.+.+++...++...|+.
T Consensus 17 ~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~ 96 (104)
T 3sfj_A 17 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 96 (104)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSE
T ss_pred CCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence 345789988721110 1123589999999999999999999999999999999887778888898888899
Q ss_pred EEEEEEc
Q 012890 248 VTIEVKH 254 (454)
Q Consensus 248 v~l~v~r 254 (454)
+.++|.|
T Consensus 97 v~l~v~R 103 (104)
T 3sfj_A 97 VRLLVTR 103 (104)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999876
No 43
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.96 E-value=1.4e-09 Score=86.89 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=61.8
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhh-cCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~-aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..++|+.+... ++ ..++|..|.++|||++ +||++||+|++|||+++.+++.+++.+++++..+ .++|+|.|++
T Consensus 12 ~~~lG~~i~~~--~~--~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~ 85 (88)
T 1kwa_A 12 DEPMGITLKMN--EL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSY 85 (88)
T ss_dssp SSCCCEEEECS--CG--GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCC
T ss_pred CCceeEEEEeC--CC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCc
Confidence 46789988741 12 2589999999999999 8899999999999999998877999999988777 8999998865
No 44
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.96 E-value=2.2e-09 Score=86.98 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=63.6
Q ss_pred ceeeeEEEEEeeCC--CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~--~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..++|+.+..-.+. +...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+|.|+
T Consensus 13 ~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 91 (97)
T 2jil_A 13 GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYD 91 (97)
T ss_dssp TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 35788888653211 112478999999999999999 99999999999999999777888888877 789999999886
Q ss_pred CC
Q 012890 256 NC 257 (454)
Q Consensus 256 ~~ 257 (454)
+.
T Consensus 92 ~~ 93 (97)
T 2jil_A 92 VS 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 45
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-09 Score=93.31 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=63.1
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEcc-CCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR-GKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~-~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..|+||.+....+. .+..+++|..|.++|||+++| |++||+|++|||+++. +++..++..+++. .++.+.|+|.|+
T Consensus 36 ~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~ 114 (128)
T 2db5_A 36 TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVARE 114 (128)
T ss_dssp SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence 46889988643221 122368999999999999999 9999999999999997 8887888888876 578999999886
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
.
T Consensus 115 ~ 115 (128)
T 2db5_A 115 P 115 (128)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=2.7e-09 Score=88.68 Aligned_cols=80 Identities=30% Similarity=0.440 Sum_probs=63.1
Q ss_pred CcceeeeEEEEEeeC----CCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEE
Q 012890 177 YDMSGIGINLREVPD----ANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (454)
Q Consensus 177 ~~~~glGi~~~~~~d----~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v 252 (454)
....|+|+.+..-.+ .+...+++|..|.++|||+++||++||+|++|||+++.+....++...++. .++.+.|+|
T Consensus 23 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 101 (110)
T 1x5q_A 23 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 101 (110)
T ss_dssp CSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEE
T ss_pred cCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEE
Confidence 346789999873211 011236899999999999999999999999999999999876666655655 789999999
Q ss_pred EcCCC
Q 012890 253 KHGNC 257 (454)
Q Consensus 253 ~r~~~ 257 (454)
.|++.
T Consensus 102 ~R~g~ 106 (110)
T 1x5q_A 102 WRESG 106 (110)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 98764
No 47
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.94 E-value=9.8e-10 Score=87.82 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=58.1
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~ 256 (454)
.++|+.+... . .+++|..|.++|||+++||++||+|++|||+++.+.+..++..++.. ..|+.+.++|.|++
T Consensus 17 ~~lG~~~~~~---~--~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 17 LDFGFTIKWD---I--PGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp SCCSEEEEEE---T--TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEEec---C--CCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 4678877641 2 26899999999999999999999999999999954455777777765 46789999998864
No 48
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.93 E-value=9.1e-10 Score=91.18 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=64.2
Q ss_pred CcceeeeEEEEEeeCCC---CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEE
Q 012890 177 YDMSGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (454)
Q Consensus 177 ~~~~glGi~~~~~~d~~---g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v 252 (454)
....|+|+.+....+.. ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+|
T Consensus 22 ~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v 100 (108)
T 2jre_A 22 KDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLLL 100 (108)
T ss_dssp STTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEEE
T ss_pred CCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 45678999987522110 12368999999999999999 99999999999999999877788877776 678999999
Q ss_pred EcCC
Q 012890 253 KHGN 256 (454)
Q Consensus 253 ~r~~ 256 (454)
.|++
T Consensus 101 ~R~~ 104 (108)
T 2jre_A 101 IRRL 104 (108)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8865
No 49
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.93 E-value=1.2e-09 Score=93.05 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=65.0
Q ss_pred CcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 177 ~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..+.++|+.+....+.....+++|..|.++|||+++| |++||+|++|||+++.++ .++..+|+...|+.+.|+|.|+
T Consensus 29 ~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~ 106 (124)
T 1wh1_A 29 NSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKNFSLLIARP 106 (124)
T ss_dssp STTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCSCCEEEEEC
T ss_pred CCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCEEEEEEEEC
Confidence 3456799998865332111368999999999999999 999999999999999976 7888889887789999999987
Q ss_pred CC
Q 012890 256 NC 257 (454)
Q Consensus 256 ~~ 257 (454)
+.
T Consensus 107 g~ 108 (124)
T 1wh1_A 107 EL 108 (124)
T ss_dssp SS
T ss_pred CE
Confidence 64
No 50
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.93 E-value=1.2e-09 Score=90.70 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=60.8
Q ss_pred cceeeeEEEEEeeCCCC----------ceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcE
Q 012890 178 DMSGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETF 247 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g----------~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~ 247 (454)
...|+||.+....+... ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. ++.
T Consensus 17 ~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~ 95 (109)
T 1q3o_A 17 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNT 95 (109)
T ss_dssp TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTE
T ss_pred CCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCE
Confidence 45689999876221100 0148999999999999999999999999999999999878888777654 778
Q ss_pred EEEEEEcC
Q 012890 248 VTIEVKHG 255 (454)
Q Consensus 248 v~l~v~r~ 255 (454)
+.|+|.|.
T Consensus 96 v~l~v~~~ 103 (109)
T 1q3o_A 96 LMVKVVMV 103 (109)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEC
Confidence 88888764
No 51
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=93.44 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=65.3
Q ss_pred cceeeeEEEEEeeCCC---CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 178 DMSGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~---g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
...++|+.+....+.. ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+|.
T Consensus 25 ~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 103 (129)
T 2dmz_A 25 DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLV 103 (129)
T ss_dssp TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEE
T ss_pred CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 4568999987643210 12368999999999999999 99999999999999999777888888887 7889999998
Q ss_pred cCCC
Q 012890 254 HGNC 257 (454)
Q Consensus 254 r~~~ 257 (454)
|++.
T Consensus 104 R~~~ 107 (129)
T 2dmz_A 104 RRKT 107 (129)
T ss_dssp EESS
T ss_pred eCCc
Confidence 8654
No 52
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.93 E-value=3.4e-09 Score=97.85 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=78.1
Q ss_pred cCCCCceecChHHhhhh-ccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccC--CCH
Q 012890 158 LGDPYTRFLSPAEFSKM-ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRG--KSA 233 (454)
Q Consensus 158 L~D~Ht~~l~~~~~~~~-~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~--~~~ 233 (454)
..|||+.++.+.+.... ......|+|+.+..-.+..-..+++|..|.++|||+++| |+.||+|++|||+++.+ ++.
T Consensus 6 ~~dp~~~~~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~ 85 (206)
T 3r0h_A 6 PQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT 85 (206)
T ss_dssp --CTTTCCCCTTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCH
T ss_pred CCCCCcCCCCCCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCH
Confidence 45999999988763321 123457899998642211111258999999999999998 99999999999999999 666
Q ss_pred HHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEe
Q 012890 234 FEVSSLLQGPSETFVTIEVKHGNCGPIESIQV 265 (454)
Q Consensus 234 ~~~~~~l~g~~g~~v~l~v~r~~~~~~~~v~l 265 (454)
.++..+++...+..+.|+|.|++.....++++
T Consensus 86 ~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v 117 (206)
T 3r0h_A 86 LKVHQLFHTTYEKAVTLTVFRADPPELEKFNV 117 (206)
T ss_dssp HHHHHHHHSCCSSEEEEEEECCSSCCEEEEEE
T ss_pred HHHHHHHHhcCCCceEEEEEecccCCCcEEEE
Confidence 77777777666666999999876554434433
No 53
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.92 E-value=3.4e-09 Score=84.80 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=57.5
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
.++|+.+..-.+ ..+++|..|.++|||+++||++||+|++|||+++.++...++..++.. .++.+.++|.|+
T Consensus 19 ~~~G~~~~~~~~---~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 90 (91)
T 1m5z_A 19 EDFGFSVADGLL---EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISRN 90 (91)
T ss_dssp SSSSEEEEECTT---SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEEC
T ss_pred CCccEEEEeccC---CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 467888765211 136899999999999999999999999999999999876666555653 478899998774
No 54
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=85.38 Aligned_cols=73 Identities=25% Similarity=0.441 Sum_probs=57.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhC-CCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~-g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+...++. ..++|..+ ++|||+ +||++||+|++|||+++.+++..++...++ ...|+.+.++|.|++
T Consensus 13 ~~g~G~~~~~~~~~---~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 13 PMGFGFTIADSPGG---GGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88)
T ss_dssp TTBSSCEEEECTTS---SSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred CCceeEEEEecCCC---CcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 35889998763221 24677766 999999 999999999999999999987778887776 567899999998864
No 55
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.92 E-value=3e-09 Score=85.92 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=60.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..++|+.+....+. .+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|+.+.+++.|++.
T Consensus 15 ~~~lG~~~~~~~~~---~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 15 GEQLGIKLVRRTDE---PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA-SGERVNLTIARPGK 90 (95)
T ss_dssp TCCCCEEEEECSSS---CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEEESC
T ss_pred CCcccEEEEeccCC---CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEcCCc
Confidence 35789988763322 358999999999999999 99999999999999998876776666653 48899999988653
No 56
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.92 E-value=4.6e-09 Score=85.25 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=61.8
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..|+|+.+..-.+.. ..+++|..|.++|||+++| |++||+|++|||+++.+++..++...++.. ++.+.++|.|++.
T Consensus 14 ~~~lG~~l~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 91 (98)
T 2opg_A 14 RTGLGLSIVGGSDTL-LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRLTLYRDEA 91 (98)
T ss_dssp TTBTCEEEEECTTST-TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEECSS
T ss_pred CCcccEEEecCCCCC-CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCCC
Confidence 467899987522211 1268999999999999999 999999999999999998777777777654 3799999988764
No 57
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.92 E-value=2.3e-09 Score=86.86 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=53.7
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEcCCCCCeeEEEe
Q 012890 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNCGPIESIQV 265 (454)
Q Consensus 198 ~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r~~~~~~~~v~l 265 (454)
.+|..|.++|||++|||++||+|++|||+++.++ .++...+... .++.+.++|.|++.+..+++++
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l 70 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGSDQRRDVKL 70 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEE
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCCCceEEEEE
Confidence 4688999999999999999999999999999988 7777766543 3489999999987544444444
No 58
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.9e-09 Score=86.95 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=61.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
...+|+.+....+.. .+++|..|.++|||+++||++||+|++|||+++.++...++...++. ++.+.|+|.|++.
T Consensus 21 ~~~lG~~~~~~~~~~--~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 21 AGRLGFSVRGGSEHG--LGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp SSSCSEEEECCTTTT--CCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CCCccEEEEccccCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 345888887632211 36899999999999999999999999999999999876777777755 7899999998764
No 59
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.90 E-value=1.6e-09 Score=88.81 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=61.5
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..|+|+.+...++ ..+++|..|.++|||+++||++||+|++|||+++.++...++..+++. .++.+.|++.|.+.
T Consensus 16 ~~g~G~~l~~~~~---~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 16 SNGYGFYLRAGPE---QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp SSSSSCEEEECSS---SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCCccEEEEeecC---CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 4578999876222 125899999999999999999999999999999999876777777765 47899999977543
No 60
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.90 E-value=3.5e-09 Score=84.87 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=58.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+.. .. .++|..|.++|||+++||+.||+|++|||+++.+++..++..+++. .+..+.++|.|++
T Consensus 13 ~~g~G~~l~~---~~---~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 83 (91)
T 2f5y_A 13 KDGFGFTICC---DS---PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMV 83 (91)
T ss_dssp TTBTSEEEEC---SS---SCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC
T ss_pred CCCccEEEec---CC---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 3578888764 22 4789999999999999999999999999999998877888777765 3567999998865
No 61
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.90 E-value=2.5e-09 Score=84.43 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=58.6
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+..-.+.. ..++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..+.++|.|++
T Consensus 11 ~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 84 (85)
T 1rgw_A 11 GPWGFRLQGGKDFN--MPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSK 84 (85)
T ss_dssp SCCCEEECCCGGGT--SCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred CccCEEEEeccCCC--CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 46888875311111 257899999999999999999999999999999998777777777654 456999998864
No 62
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.90 E-value=8.3e-10 Score=94.28 Aligned_cols=80 Identities=24% Similarity=0.333 Sum_probs=67.0
Q ss_pred cCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCC-CCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 176 ~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL-~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
+..+.|+|+.+... ++...++|..|.++|||+++|| ++||+|++|||+++.+++..++..++++..|+.+.+++.|
T Consensus 16 ~~~~~glG~~~~~~---~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 92 (127)
T 1b8q_A 16 KRKVGGLGFLVKER---VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92 (127)
T ss_dssp CTTTSCCSCCEEEC---TTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEEC
T ss_pred eCCCCcEeEEEEec---CCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEe
Confidence 34457899988762 2223689999999999999998 9999999999999999767889888988788999999999
Q ss_pred CCCC
Q 012890 255 GNCG 258 (454)
Q Consensus 255 ~~~~ 258 (454)
++..
T Consensus 93 ~g~~ 96 (127)
T 1b8q_A 93 GPEG 96 (127)
T ss_dssp CCCS
T ss_pred CCce
Confidence 7643
No 63
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.90 E-value=3.6e-09 Score=88.01 Aligned_cols=72 Identities=26% Similarity=0.260 Sum_probs=60.4
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..++|+.+.. . ..++|..|.++|||++|||++||+|++|||+++..++.+++.++++...++.++|+|.|..
T Consensus 33 ~~~~G~~l~~---~---~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 33 EGDLGFTLRG---N---APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp GGCCCEEEES---S---SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CCceeEEEeC---C---CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 3578887753 1 1478999999999999999999999999999999887788888888777777999998754
No 64
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.90 E-value=2.1e-09 Score=86.67 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=57.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..|+|+.+....+ ...++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..+.+.+.|.
T Consensus 15 ~~~~G~~l~~~~~---~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~~~~~~~r~ 87 (95)
T 3r68_A 15 SNGYGFYLRAGPE---QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG-GDQTTLLVLDK 87 (95)
T ss_dssp TTBCSCEEEEC-----CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEEC
T ss_pred CCcccEEEEecCC---CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEECC
Confidence 4578988876222 1258899999999999999999999999999999999888888888874 55566655443
No 65
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=1.2e-09 Score=89.88 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=62.8
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCC-CcEEEEEEEcC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHG 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~-g~~v~l~v~r~ 255 (454)
...|+||.+..-.+.+ ..++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... ++.++|+|.|+
T Consensus 18 ~~~g~G~~i~~g~~~~--~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 95 (103)
T 1uep_A 18 MESGFGFRILGGDEPG--QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95 (103)
T ss_dssp SSSSCCEEECCCCSTT--SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCccCEEEeeecCCC--CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeC
Confidence 4568999886421111 358899999999999999 9999999999999999887788888887644 78999999886
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
+
T Consensus 96 ~ 96 (103)
T 1uep_A 96 V 96 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.89 E-value=4.5e-09 Score=87.14 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=63.7
Q ss_pred eeeeEEEEEeeC--CCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPD--ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d--~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.|+||.+..-.+ ..+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++...+..++|+|.|..
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 589998865322 1123478999999999999999 9999999999999999888788988888766678999998863
No 67
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=9.2e-09 Score=86.53 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=64.0
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~---~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..++||.+..-.+. .+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..++|+|+|
T Consensus 29 ~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R 107 (117)
T 1ujd_A 29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRL 107 (117)
T ss_dssp CCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEES
T ss_pred CCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEE
Confidence 36789988653221 122368999999999999999 99999999999999999888888888887 57889999998
Q ss_pred CCC
Q 012890 255 GNC 257 (454)
Q Consensus 255 ~~~ 257 (454)
++.
T Consensus 108 ~~~ 110 (117)
T 1ujd_A 108 DLN 110 (117)
T ss_dssp SCC
T ss_pred CCc
Confidence 753
No 68
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.89 E-value=6e-09 Score=84.13 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=57.6
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
.++|+.+..... ++..+++|..|.++|||++|||++||+|++|||+++.+++.+++..++. +..++++|+.
T Consensus 20 ~~~Gf~v~~~~~-~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~---~~~l~ltV~~ 90 (94)
T 3kzd_A 20 DTYGFSLSSVEE-DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS---QPSLGLLVRT 90 (94)
T ss_dssp -CCSEEEEEECS-SSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH---SSEEEEEEEE
T ss_pred CCcCEEEEecCC-CCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh---CCeEEEEEEe
Confidence 478888876532 3334799999999999999999999999999999999988788888775 3567777753
No 69
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.89 E-value=1.6e-09 Score=87.52 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=61.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.++|+.+..-.+ ...+++|..|.++|||+++||++||+|++|||+++.+++..++..+++... +.+.|+|.|++.
T Consensus 16 ~~lG~~l~~g~~--~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~ 90 (94)
T 1vb7_A 16 APWGFRISGGRD--FHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSG 90 (94)
T ss_dssp SCCSBCCEEETT--TTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred CCccEEEecccC--CCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCc
Confidence 467887764222 223689999999999999999999999999999999987788888887654 889999998763
No 70
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.89 E-value=5.4e-09 Score=85.37 Aligned_cols=76 Identities=26% Similarity=0.417 Sum_probs=61.5
Q ss_pred eeeeEEEEEeeCCC---CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~~---g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
.|+||.+..-.+.. +..+++|..|.++|||+++| |++||+|++|||+++.++...++..+++.. ++.+.|+|.|+
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 96 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHR 96 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC-CSEEEEEEEEE
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeC
Confidence 68999987622110 12368999999999999999 999999999999999998777777777654 78899999876
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
+
T Consensus 97 ~ 97 (101)
T 2jik_A 97 L 97 (101)
T ss_dssp S
T ss_pred C
Confidence 5
No 71
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.89 E-value=4.3e-09 Score=84.65 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=60.6
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+.. .+....++|..|.++|||+++| |++||+|++|||+++.+.+..++..++++..+ .++|+|.+..
T Consensus 15 ~~lG~~i~~---~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 15 EPLGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp SCCCEEEEE---CTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CCccEEEEe---cCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 489999876 2112368999999999999999 99999999999999988887899888877655 8899888753
No 72
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.88 E-value=3.3e-09 Score=85.04 Aligned_cols=74 Identities=32% Similarity=0.429 Sum_probs=60.1
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..++|+.+....+ ..+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .+..++|+|.|.+
T Consensus 15 ~~~lG~~~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 15 GKGLGLSIVGKRN---DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS 89 (92)
T ss_dssp TSCCSEEEECCSS---SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CCcccEEEEeccC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence 4678998875322 2368999999999999999 99999999999999998876777766654 4678999998864
No 73
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.88 E-value=4.2e-09 Score=89.43 Aligned_cols=77 Identities=27% Similarity=0.365 Sum_probs=63.6
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEcC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r~ 255 (454)
...|+|+.+..-.+ ....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. .|+.+.|+|.|+
T Consensus 28 ~~~glG~~~~~g~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 105 (123)
T 1ueq_A 28 SNMGFGFTIIGGDE--PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105 (123)
T ss_dssp CTTSCSEEEECCSS--SSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred CCCceeEEEecccC--CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 34589998874211 11358999999999999999 999999999999999988878888888775 489999999886
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
.
T Consensus 106 ~ 106 (123)
T 1ueq_A 106 Y 106 (123)
T ss_dssp C
T ss_pred C
Confidence 5
No 74
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.88 E-value=4.3e-10 Score=114.36 Aligned_cols=144 Identities=17% Similarity=0.275 Sum_probs=100.8
Q ss_pred ccchHHHHHHHHHHHHhhcCcCCCCCCCchhhHHHHHHHhhccccChHHHHHHHHHHHHhcCCCCceecChHHhhhhc--
Q 012890 98 AKTNEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA-- 175 (454)
Q Consensus 98 ~~~~~~~~~~~w~~v~~~y~d~~~~~~~~~dW~~~~e~~~~~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~~~~-- 175 (454)
+..=...+.++|+.....|++.. ++...+|. ...|..+..++..++|+.+.|..+++.+...
T Consensus 148 a~~i~~ti~qaf~~~y~~~l~~~--gi~~~~~~--------------~~~y~~~~~~~~~~~d~~~~~~~~~~~~~V~i~ 211 (388)
T 3suz_A 148 AQLIAQSIGQAFSVAYQEFLRAN--GINPEDLS--------------QKEYSDIINTQEMYNDDLIHFSNSENCKELQLE 211 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TCCTTTSC--------------HHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhhcccc--CcCccccc--------------hhhhcccccccccccchhhhhcccccceEEEEE
Confidence 44445577888888888887643 34555661 3345556666666777777777777654432
Q ss_pred cCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEE
Q 012890 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVK 253 (454)
Q Consensus 176 ~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~ 253 (454)
+....++|+.+....++....+++|..|.++|||+++| |+.||+|++|||+++.+++..++..++++. .+..++|++.
T Consensus 212 k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~ 291 (388)
T 3suz_A 212 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV 291 (388)
T ss_dssp CCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEE
T ss_pred CCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccc
Confidence 22234677776542111111237899999999999999 999999999999999999877788888775 6778999998
Q ss_pred cCCC
Q 012890 254 HGNC 257 (454)
Q Consensus 254 r~~~ 257 (454)
|++.
T Consensus 292 r~~~ 295 (388)
T 3suz_A 292 SCPP 295 (388)
T ss_dssp ECCS
T ss_pred cccc
Confidence 8653
No 75
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.88 E-value=1.4e-09 Score=89.33 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=60.2
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~ 258 (454)
.++||.+..-.+ ....++|..|.++|||+++||++||+|++|||+++.++...++..+++.. ++.+.|+|.|++..
T Consensus 15 ~~~G~~l~gg~~--~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~~ 90 (103)
T 1wf7_A 15 APWGFRLQGGKD--FNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRASAA 90 (103)
T ss_dssp SCCSCCEEEETT--TTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCSCC
T ss_pred CccCEEEecccc--CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCCc
Confidence 467887764221 12358899999999999999999999999999999998766776666544 77899999887643
No 76
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=3.6e-09 Score=87.02 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=61.1
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..++|+.+....+. ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++. ++.+.|+|+|+.
T Consensus 26 ~~~lG~~~~~~~~~--~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~ 99 (104)
T 1wi2_A 26 GAQLGFNIRGGKAS--QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFS 99 (104)
T ss_dssp TCCCSEEEECCSSS--CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred CCCccEEEEcccCC--CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence 36789988752211 135899999999999999999999999999999999777888888876 788999998864
No 77
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.87 E-value=7.5e-09 Score=85.21 Aligned_cols=77 Identities=27% Similarity=0.426 Sum_probs=62.1
Q ss_pred eeeeEEEEEeeCC---CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 180 SGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~---~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
.|+||.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++.. ++.+.|+|.|+
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKP 92 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 5889998752211 112368999999999999999 999999999999999988777777777654 78999999987
Q ss_pred CC
Q 012890 256 NC 257 (454)
Q Consensus 256 ~~ 257 (454)
+.
T Consensus 93 ~~ 94 (105)
T 2awx_A 93 TS 94 (105)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 78
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.87 E-value=7.9e-09 Score=83.64 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=59.6
Q ss_pred ceeeeEEEEEee-----CCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 179 MSGIGINLREVP-----DANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~~-----d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
..++||.+.... ..+....++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..++|+|.
T Consensus 15 ~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~ 93 (96)
T 2ego_A 15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETL 93 (96)
T ss_dssp TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEE
T ss_pred CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEE
Confidence 357888886421 11112368999999999999999999999999999999998778888888765 458999887
Q ss_pred cC
Q 012890 254 HG 255 (454)
Q Consensus 254 r~ 255 (454)
++
T Consensus 94 ~~ 95 (96)
T 2ego_A 94 YG 95 (96)
T ss_dssp CC
T ss_pred EC
Confidence 64
No 79
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.87 E-value=8.5e-09 Score=82.50 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=50.9
Q ss_pred EEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 197 TLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... ..+.++|.|++.
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~ 84 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDER 84 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEC---
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeCCc
Confidence 68999999999999999 9999999999999999766688888887644 489999998763
No 80
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=2.3e-09 Score=91.52 Aligned_cols=74 Identities=28% Similarity=0.385 Sum_probs=62.9
Q ss_pred CcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEc
Q 012890 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKH 254 (454)
Q Consensus 177 ~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r 254 (454)
....|+||.+... + ..++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. +.|+.++|+|.|
T Consensus 35 k~~~glG~~i~~~---~--~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R 109 (126)
T 1wif_A 35 VGNLGLGLVVIQN---G--PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109 (126)
T ss_dssp CCTTCCCCCEEEE---T--TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEES
T ss_pred cCCceEeEEEEcC---C--CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEE
Confidence 3456888877641 2 268899999999999999 99999999999999987667899999987 679999999998
Q ss_pred C
Q 012890 255 G 255 (454)
Q Consensus 255 ~ 255 (454)
+
T Consensus 110 ~ 110 (126)
T 1wif_A 110 G 110 (126)
T ss_dssp S
T ss_pred C
Confidence 6
No 81
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.87 E-value=8e-09 Score=83.07 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=60.3
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~---~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..|+||.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..+.|+|.|
T Consensus 13 ~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R 91 (94)
T 2fe5_A 13 PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAK 91 (94)
T ss_dssp TTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEEC
T ss_pred CCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEc
Confidence 35789988741110 112368999999999999999 999999999999999998777777777654 4589999988
Q ss_pred CC
Q 012890 255 GN 256 (454)
Q Consensus 255 ~~ 256 (454)
++
T Consensus 92 ~g 93 (94)
T 2fe5_A 92 PG 93 (94)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 82
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.87 E-value=3.8e-09 Score=85.30 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=62.3
Q ss_pred cceeeeEEEEEeeCC--CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 178 DMSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 178 ~~~glGi~~~~~~d~--~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
...|+|+.+....+. ....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..+.|+|.|
T Consensus 13 ~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 91 (97)
T 2iwn_A 13 NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMR 91 (97)
T ss_dssp BTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 456799998763110 012368899999999999999 99999999999999999877777777766 78899999987
Q ss_pred CC
Q 012890 255 GN 256 (454)
Q Consensus 255 ~~ 256 (454)
++
T Consensus 92 ~g 93 (97)
T 2iwn_A 92 RG 93 (97)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 83
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.86 E-value=3e-09 Score=113.63 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHhhcCcCCCCCCCchhhHHHHHHHhhccccChHHHHHHHHHHHHhcCC-CCceecChHHhhhh-----
Q 012890 101 NEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLGD-PYTRFLSPAEFSKM----- 174 (454)
Q Consensus 101 ~~~~~~~~w~~v~~~y~d~~~~~~~~~dW~~~~e~~~~~~~~~~~~~~~~i~~ml~~L~D-~Ht~~l~~~~~~~~----- 174 (454)
+.+.|+.+++.+.+.|... ..+++..|+.+..++.... ++...+++++..-.. +...++....++..
T Consensus 397 g~~sldd~mr~l~~~~~~~-~~~~t~~d~~~~~e~~sG~------dl~~ff~~~l~~t~~~p~~~~l~~~G~~l~~~~~~ 469 (597)
T 4fgm_A 397 HKLTLARVMKELWHEFGKT-SIGTADDTVINWLNQYPGI------DISDFLKDALYNKESLSLVELLQNFGVMVQKQVPV 469 (597)
T ss_dssp TSCCHHHHHHHHHHHHTTT-TCCBCTTHHHHHHHTSTTC------CCHHHHHHHHHSCSCCCCHHHHHTTTEEEEEECCS
T ss_pred CchHHHHHHHHHHHHhCcC-CCCCCHHHHHHHHHHhcCc------CHHHHHHHHHhCCCCcchhHHHhhcceEEEeccCC
Confidence 3457888888887776532 2456777888888776642 244556666665543 12122211111100
Q ss_pred ----------ccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-C
Q 012890 175 ----------ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-P 243 (454)
Q Consensus 175 ----------~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~ 243 (454)
......++|+.+.. .++ +++|..|.++|||++|||++||+|++|||++|. . .++...+.. +
T Consensus 470 ~~~~~~~~~~~~~~~~~lG~~~~~---~~~--gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~--~~l~~~l~~~~ 541 (597)
T 4fgm_A 470 DDNSVGGKASEQPARVNFGAKYKA---SPQ--GLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-E--QSVKRILERYI 541 (597)
T ss_dssp STTCCCSCCCSCCCSCCCSEEEEE---ETT--EEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-T--TTHHHHHTTCC
T ss_pred ccccccccccccCCccccceEEec---cCC--eEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-H--HHHHHHHHhcC
Confidence 01123578988865 223 689999999999999999999999999999995 4 456666664 6
Q ss_pred CCcEEEEEEEcCCCC
Q 012890 244 SETFVTIEVKHGNCG 258 (454)
Q Consensus 244 ~g~~v~l~v~r~~~~ 258 (454)
.|+.|+|+|.|++..
T Consensus 542 ~g~~v~l~v~R~g~~ 556 (597)
T 4fgm_A 542 PGDTVTIHAFRRDEL 556 (597)
T ss_dssp TTCEEEEEEEETTEE
T ss_pred CCCEEEEEEEECCEE
Confidence 799999999997643
No 84
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.86 E-value=1.5e-09 Score=93.15 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=65.3
Q ss_pred cceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 178 DMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
...|+||.+..-.+. .+...++|..|.+++||+++ ||+.||+|++|||+++.+++.+++..++++..++.+.|+|+|.
T Consensus 38 ~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~ 117 (130)
T 1i16_A 38 MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK 117 (130)
T ss_dssp TSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred CCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeC
Confidence 356899998752210 01235899999999999999 8999999999999999998889999999988888899999875
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
.
T Consensus 118 ~ 118 (130)
T 1i16_A 118 S 118 (130)
T ss_dssp S
T ss_pred C
Confidence 4
No 85
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.86 E-value=1.2e-08 Score=84.12 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=62.7
Q ss_pred ceeeeEEEEEeeC-CCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d-~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+..-.+ ......++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .++.+.|+|.|++
T Consensus 20 ~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 98 (106)
T 3axa_A 20 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQG 98 (106)
T ss_dssp SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 4578888864211 1122479999999999999999 99999999999999998877777777765 5889999999876
Q ss_pred C
Q 012890 257 C 257 (454)
Q Consensus 257 ~ 257 (454)
.
T Consensus 99 ~ 99 (106)
T 3axa_A 99 A 99 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 86
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.86 E-value=1.8e-09 Score=88.68 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=62.4
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.++|+.+..-.+ ....++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. ++.+.|+|.|++.
T Consensus 15 ~~lG~~l~~g~~--~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~ 89 (103)
T 1v5l_A 15 APWGFRLSGGID--FNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAET 89 (103)
T ss_dssp SCCSBCCEEETT--TTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTT
T ss_pred CCcCEEEecccc--CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCe
Confidence 467777764221 12368899999999999999999999999999999997668898888877 8999999998764
No 87
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.86 E-value=3.7e-09 Score=90.61 Aligned_cols=75 Identities=28% Similarity=0.433 Sum_probs=62.4
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCC-CcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~-g~~v~l~v~r~~ 256 (454)
.|+|+.+..-.+ ....++|..|.++|||+++| |+.||+|++|||+++.+++..++..+++... |+.++|+|.|+.
T Consensus 29 ~g~G~~i~g~~~--~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 29 RGFGFTVVGGDE--PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp SCCSEEEEEEEE--TTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred CcccEEEeCccC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 478888865222 12358999999999999999 9999999999999999888788888887654 889999998865
No 88
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.86 E-value=6.9e-09 Score=82.86 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=59.1
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..++|+.+..-.+ ....++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++.. +..++|+|.|
T Consensus 15 ~~~lG~~i~~~~~--~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 88 (90)
T 1qav_A 15 AGGLGISIKGGRE--NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY 88 (90)
T ss_dssp TTCCCEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred CCCcCEEEEcccC--CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 4578888865221 1236899999999999999 9999999999999999998777777777654 6778888876
No 89
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.86 E-value=5e-09 Score=85.73 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=60.8
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhh-cCCCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEcC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~-aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r~ 255 (454)
.++|+.+......+....++|..|.++|||++ +||++||+|++|||+++.+.+.+++.+++++. .++.++|+|.|.
T Consensus 21 ~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 58999987521111112489999999999999 56999999999999999777778998888774 788999999874
No 90
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.85 E-value=5.4e-09 Score=85.53 Aligned_cols=78 Identities=24% Similarity=0.255 Sum_probs=62.2
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~---~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .+..+.|+|.|
T Consensus 14 ~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R 92 (102)
T 2i1n_A 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRR 92 (102)
T ss_dssp TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 45789998752110 012368999999999999999 99999999999999998877777777765 57899999988
Q ss_pred CCC
Q 012890 255 GNC 257 (454)
Q Consensus 255 ~~~ 257 (454)
++.
T Consensus 93 ~~~ 95 (102)
T 2i1n_A 93 RQP 95 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 91
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.85 E-value=4.5e-09 Score=85.54 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=59.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..++|+.+... .+ .+++|..|.++|||+++| |++||+|++|||+++.+++.+++.+++++. +..++|+|.+.
T Consensus 23 ~~~lG~~l~~~--~~--~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 23 EEPMGICLKLN--EK--QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp SSCCSEEEEEC--TT--CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCCeeEEEEeC--CC--CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 45789888752 12 268999999999999999 999999999999999985558888888765 56888888754
No 92
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.85 E-value=7.2e-09 Score=83.74 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=61.0
Q ss_pred eeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+..-.+. ....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+|.|++
T Consensus 16 ~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 93 (96)
T 1d5g_A 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQ 93 (96)
T ss_dssp SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCS
T ss_pred CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 5788888741110 011268999999999999999 99999999999999998877888877776 5789999998865
No 93
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.4e-09 Score=86.39 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=59.1
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++||.+..-.+ ....++|..|.++|||+++||++||+|++|||+++.++...++..+++. .++.+.|+|.|++
T Consensus 18 ~~~G~~l~gg~~--~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g 91 (94)
T 2eeg_A 18 SPWGFRLVGGRD--FSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGP 91 (94)
T ss_dssp SCCSCCEECCTT--TTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCS
T ss_pred CccCEEEECccC--CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 467888763111 1125789999999999999999999999999999999876777777765 5778999998865
No 94
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.85 E-value=7.1e-09 Score=89.12 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=63.1
Q ss_pred ceeeeEEEEE-eeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEcC
Q 012890 179 MSGIGINLRE-VPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~-~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r~ 255 (454)
..++||.+.. .....+...++|..|.++|||+++| |++||+|++|||+++.+.+.+++..+++.. .+..++|+|.|+
T Consensus 47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 126 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126 (131)
T ss_dssp CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence 4468888753 1112233478999999999999999 999999999999999988878888888764 678999999886
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
+
T Consensus 127 g 127 (131)
T 1wfg_A 127 G 127 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.85 E-value=7.1e-09 Score=83.99 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=59.2
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
...|+|+.+.. .. .+++|..|.++|||+++| |++||+|++|||+++.+.+..++..++++. +..+.|+|.|..
T Consensus 18 ~~~glG~~~~~--~~---~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 91 (96)
T 2qkv_A 18 AGKELGLSLSP--NE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA-NGKVSMEVTRPK 91 (96)
T ss_dssp TTBCCCEEEEE--CS---SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEECCC
T ss_pred CCCCccEEEEe--CC---CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCcEEEEEEeCC
Confidence 45678988765 11 258999999999999999 999999999999999987767776667664 457999998853
No 96
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.85 E-value=4e-09 Score=90.04 Aligned_cols=77 Identities=26% Similarity=0.326 Sum_probs=64.8
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
...|+|+.+.... +..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++...++.+.+++.|++.
T Consensus 18 ~~~g~G~~l~~~~---~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 18 GPSGYGFNLHSDK---SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp CSSSCCEEEEECS---SSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CCCcccEEEEecC---CCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 3468999987632 1125899999999999999999999999999999999766888888887788889999988653
No 97
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=4e-09 Score=86.87 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=63.1
Q ss_pred ceeeeEEEEEeeCC----CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 179 MSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~~d~----~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
..|+||.+..-.+. .+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..+.|+|.
T Consensus 17 ~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~ 95 (105)
T 1wha_A 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLE 95 (105)
T ss_dssp TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEE
T ss_pred CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence 35789888742110 112368999999999999999 999999999999999998778888888765 788999998
Q ss_pred cCCCC
Q 012890 254 HGNCG 258 (454)
Q Consensus 254 r~~~~ 258 (454)
|+..+
T Consensus 96 R~~~~ 100 (105)
T 1wha_A 96 REAGS 100 (105)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 87543
No 98
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=6.4e-09 Score=87.60 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=61.5
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++...+ .++|+|.|++
T Consensus 35 ~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~g 113 (117)
T 2fne_A 35 PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVLSSD 113 (117)
T ss_dssp TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEEECS
T ss_pred CCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEeCC
Confidence 36889998752211 112468999999999999999 99999999999999998877888888876544 5999998875
No 99
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.85 E-value=3.6e-09 Score=84.50 Aligned_cols=75 Identities=28% Similarity=0.467 Sum_probs=59.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCC-CcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~-g~~v~l~v~r~ 255 (454)
..|+|+.+..-.+. + ..++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++... +..++|+|.|.
T Consensus 12 ~~g~G~~~~~g~~~-~-~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 12 ETGFGFRILGGNEP-G-EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp TTBCCEEEEECSST-T-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CCccCEEEEccccC-C-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 35789988752221 1 258999999999999999 9999999999999998877788877776543 45899998774
No 100
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.84 E-value=3.3e-09 Score=87.48 Aligned_cols=59 Identities=32% Similarity=0.385 Sum_probs=52.6
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
+++|..|.++|||+++||++||+|++|||+++.++...++..+++ ..|+.++|+|.|++
T Consensus 27 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 85 (106)
T 3ngh_A 27 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGD 85 (106)
T ss_dssp SCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHH
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECC
Confidence 578999999999999999999999999999999997778877776 56889999998864
No 101
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.84 E-value=7.3e-09 Score=84.95 Aligned_cols=74 Identities=30% Similarity=0.439 Sum_probs=59.7
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+....+ ..+++|..|.++|||+++| |++||+|++|||+++.+++..++...+.. .+..+.++|.|+.
T Consensus 21 ~~glG~~~~~~~~---~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 21 STGLGFNIVGGEX---GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp TTBTSEEEEECC----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCccCEEEECCCC---CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 3578998875221 1268999999999999999 99999999999999998877777666665 5678999988753
No 102
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=4.1e-10 Score=96.15 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=69.4
Q ss_pred CCCceecChHHhh-hhc---cCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHH
Q 012890 160 DPYTRFLSPAEFS-KMA---RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFE 235 (454)
Q Consensus 160 D~Ht~~l~~~~~~-~~~---~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~ 235 (454)
|+|+.|+++++++ .+. ...+.|... ..++ ....++|..|.++|||+++||++||+|++|||+++.+++..+
T Consensus 26 ~~~t~y~~~~~~~~~~~~~~~G~~~G~~~--~~~~---~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~ 100 (126)
T 2yuy_A 26 RHFIVYPPESAIQFSYKDEENGNRGGKQR--NRLE---PMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQ 100 (126)
T ss_dssp CCCCCCCCSSCCCSCSSSCCCCSCCCTTS--CCCC---CCCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHH
T ss_pred cCccccCCHHHHHHHHHhhcCcceeceee--eccc---CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 8999999988765 221 233333110 0011 112578999999999999999999999999999999877788
Q ss_pred HHHhhCCCCCcEEEEEEEcCCC
Q 012890 236 VSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 236 ~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
+..+++.. ++.+.|+|.|++.
T Consensus 101 ~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 101 VIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp HHHHHHTC-TTEEEEECCCCCC
T ss_pred HHHHHHcC-CCEEEEEEEECCC
Confidence 88888765 8999999988754
No 103
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.84 E-value=5.3e-09 Score=90.27 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=53.5
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCCCCCeeEEEe
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQV 265 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~~~~~~~v~l 265 (454)
+++|..|.++|||+ +||++||+|++|||+++.++ .++...+.. +.|+.++++|.|++. ..++++
T Consensus 58 g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~--~~~~~v 122 (134)
T 2l97_A 58 GVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGK--EETTSI 122 (134)
T ss_dssp CEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTE--EEEEEE
T ss_pred CEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCE--EEEEEE
Confidence 58899999999999 99999999999999999988 677766655 378999999999763 344444
No 104
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.83 E-value=1.3e-08 Score=79.21 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=50.4
Q ss_pred EEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 197 TLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
+++|..|.++|||+++| |++||+|++|||+++.+++..++..++....+ .+.+++.|+
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~ 80 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQRD 80 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC-
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-eEEEEEEeC
Confidence 68999999999999999 99999999999999997766888888876544 888988875
No 105
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=6.1e-09 Score=85.09 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=60.0
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
...++|+.+....+.. ..++|..|.++|||+++||++||+|++|||+++.++...++...++. +..+.|+|.|++.
T Consensus 19 ~~~~lG~~~~~~~~~~--~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 94 (101)
T 1uez_A 19 AHEGLGFSIRGGSEHG--VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKG--SKKLVLSVYSAGR 94 (101)
T ss_dssp TTTCSSEEEEECTTTT--CCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSS--SSSCCEEECCCCC
T ss_pred CCCcccEEEeCCCCCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcC--CCeEEEEEEECCc
Confidence 4568999997632211 36899999999999999999999999999999999976555555543 4578888988753
No 106
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.83 E-value=5.6e-09 Score=84.94 Aligned_cols=71 Identities=23% Similarity=0.226 Sum_probs=57.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC--CCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG--PSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g--~~g~~v~l~v~r 254 (454)
..|+|+.+.. .++ ..+|..|.++|||++|||++||+|++|||+++...+.+++...++. +.|+.+.|.|..
T Consensus 27 ~~g~G~~l~~---~~~--~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~ 99 (101)
T 3qik_A 27 EEDYGFDIEE---KNK--AVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT 99 (101)
T ss_dssp SSSSSEEEEE---ETT--EEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcccEEEEc---cCC--CeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence 4578888876 222 6789999999999999999999999999999964445888888876 578888887753
No 107
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.83 E-value=7.8e-09 Score=88.01 Aligned_cols=73 Identities=30% Similarity=0.418 Sum_probs=60.2
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhC-CCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~-g~~g~~v~l~v~r~~ 256 (454)
.++|+.+..-. + .+++|..|.++|||++|||++||+|++|||+++.+++..++...+. ...|+.++|+|.|++
T Consensus 39 ~~lG~~l~~~~--~--~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 112 (124)
T 3tsv_A 39 DSVGLRLAGGN--D--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112 (124)
T ss_dssp SCCCEEEEECT--T--SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred CceeEEEecCC--C--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 57888876411 1 2689999999999999999999999999999999987777777554 467899999998864
No 108
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.82 E-value=6.7e-09 Score=87.40 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=62.6
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+....+.+. ..++|..|.++|||+++| |++||+|++|||+++.+.+.+++..+++ ..++.++|+|.|++
T Consensus 27 ~~lG~~i~~~~~~~~-~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 102 (117)
T 1v62_A 27 SALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVP 102 (117)
T ss_dssp CCCCCEEEEECCSSS-CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBT
T ss_pred CcccEEEEccCCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECC
Confidence 578888876322111 248999999999999999 9999999999999998877789988888 47899999998865
No 109
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.82 E-value=1.1e-08 Score=84.57 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=61.4
Q ss_pred ceeeeEEEEEe---eC-CCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 179 MSGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~---~d-~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
..|+||.+..- .+ ..+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. ++.+.|+|.
T Consensus 19 ~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~ 97 (107)
T 1wf8_A 19 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-KGNVRFVIG 97 (107)
T ss_dssp TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC-CSEEEEEEE
T ss_pred CCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEE
Confidence 35789988751 11 1123479999999999999999 999999999999999988777777777653 789999998
Q ss_pred cCC
Q 012890 254 HGN 256 (454)
Q Consensus 254 r~~ 256 (454)
|++
T Consensus 98 R~~ 100 (107)
T 1wf8_A 98 REK 100 (107)
T ss_dssp EEC
T ss_pred eCC
Confidence 764
No 110
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.82 E-value=9.9e-09 Score=84.71 Aligned_cols=76 Identities=34% Similarity=0.525 Sum_probs=59.9
Q ss_pred eeeeEEEEEeeCCCC----------ceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEE
Q 012890 180 SGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVT 249 (454)
Q Consensus 180 ~glGi~~~~~~d~~g----------~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~ 249 (454)
.|+||.+....+.++ ...++|..|.++|||+++||++||+|++|||+++.+++..++..+++. .++.+.
T Consensus 17 ~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~ 95 (107)
T 3qe1_A 17 SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRA-GEKELI 95 (107)
T ss_dssp TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHH-CSSEEE
T ss_pred CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEE
Confidence 378998865221111 112369999999999999999999999999999998877888887764 588999
Q ss_pred EEEEcCC
Q 012890 250 IEVKHGN 256 (454)
Q Consensus 250 l~v~r~~ 256 (454)
|++.|..
T Consensus 96 l~v~r~~ 102 (107)
T 3qe1_A 96 LTVLSVE 102 (107)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 9998864
No 111
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.82 E-value=1.1e-08 Score=85.60 Aligned_cols=72 Identities=28% Similarity=0.454 Sum_probs=60.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCC-CCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL-~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.|+|+.+... + .+++|..|.++|||+++|| ++||+|++|||+++.+++.+++..+++... ..+.|+|.|.+.
T Consensus 37 ~~lG~~i~~~---~--~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 109 (113)
T 1va8_A 37 IPLGATVRNE---M--DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSSG 109 (113)
T ss_dssp CCCCEEEEEC---S--SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred CceeEEEEeC---C--CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 4889988752 2 2689999999999999999 999999999999999887788888886544 579999988653
No 112
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.81 E-value=1.8e-08 Score=89.99 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=64.7
Q ss_pred CcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 177 ~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
....++|+.+... + .+++|..|.++|||++|||+.||+|++|||+++.++..+....+++...++.+++++++++
T Consensus 13 ~~~~~lG~~~~~~---~--~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~ 87 (166)
T 1w9e_A 13 DQDGKIGLRLKSI---D--NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 87 (166)
T ss_dssp CTTSCCSEEEEEE---T--TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCT
T ss_pred CCCCcEeEEEEeC---C--CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 3456889988763 2 2689999999999999999999999999999999996534555666667889999996653
Q ss_pred CCCeeEEEee
Q 012890 257 CGPIESIQVQ 266 (454)
Q Consensus 257 ~~~~~~v~l~ 266 (454)
...++++.
T Consensus 88 --~~~~v~l~ 95 (166)
T 1w9e_A 88 --FERTITMH 95 (166)
T ss_dssp --TCEEEEEE
T ss_pred --CcEEEEEe
Confidence 23455554
No 113
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.81 E-value=4.5e-09 Score=89.13 Aligned_cols=81 Identities=26% Similarity=0.380 Sum_probs=64.4
Q ss_pred CcceeeeEEEEEee--CCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCC-CcEEEEEE
Q 012890 177 YDMSGIGINLREVP--DANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEV 252 (454)
Q Consensus 177 ~~~~glGi~~~~~~--d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~-g~~v~l~v 252 (454)
....++||.+..-. +++....++|..|.++|||+++| |++||+|++|||+++.+++.+++.++++... ++.++|+|
T Consensus 24 ~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v 103 (122)
T 1v5q_A 24 DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103 (122)
T ss_dssp CSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence 34578999987421 01112357899999999999999 9999999999999999866688888887654 88999999
Q ss_pred EcCCC
Q 012890 253 KHGNC 257 (454)
Q Consensus 253 ~r~~~ 257 (454)
.|++.
T Consensus 104 ~R~~~ 108 (122)
T 1v5q_A 104 EFDVA 108 (122)
T ss_dssp EEECC
T ss_pred EECCc
Confidence 88653
No 114
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.81 E-value=3.3e-09 Score=87.27 Aligned_cols=90 Identities=21% Similarity=0.344 Sum_probs=64.8
Q ss_pred CCCceecChHHhhhhccCcceeeeEEEEEeeCC-----CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHH
Q 012890 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDA-----NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAF 234 (454)
Q Consensus 160 D~Ht~~l~~~~~~~~~~~~~~glGi~~~~~~d~-----~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~ 234 (454)
|+|+.+.+.... +.+....++||.+...... +....++|..|.++|||+++||++||+|++|||+++.+++..
T Consensus 9 ~p~s~~~~~~v~--l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~ 86 (104)
T 2z17_A 9 SDFSWSQRKLVT--VEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYK 86 (104)
T ss_dssp --CCCSCCCEEE--EECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHH
T ss_pred ccCCCCcceEEE--EEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHH
Confidence 788887765432 2233345688888753110 112368999999999999999999999999999999977778
Q ss_pred HHHHhhCCCCCcEEEEEE
Q 012890 235 EVSSLLQGPSETFVTIEV 252 (454)
Q Consensus 235 ~~~~~l~g~~g~~v~l~v 252 (454)
++.++++...+ .++|+|
T Consensus 87 ~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 87 QVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp HHHHHHHHTTT-EEEEEC
T ss_pred HHHHHHHhCCC-cEEEEE
Confidence 88888876644 777664
No 115
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.80 E-value=4.8e-09 Score=88.11 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=62.1
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEcc-CCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR-GKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~-~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..++|+.+....+. .+..+++|..|.++|||+++| |++||+|++|||+++. +++..++..+++. .++.+.|+|.|+
T Consensus 31 ~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~ 109 (117)
T 2o2t_A 31 SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARG 109 (117)
T ss_dssp SSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESS
T ss_pred CCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 35678777653221 122478999999999999999 9999999999999998 7777888877765 578999999987
Q ss_pred CC
Q 012890 256 NC 257 (454)
Q Consensus 256 ~~ 257 (454)
+.
T Consensus 110 ~~ 111 (117)
T 2o2t_A 110 SL 111 (117)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 116
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.80 E-value=4.6e-09 Score=87.65 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=62.4
Q ss_pred ceeeeEEEEEe---eC-CCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 179 MSGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~---~d-~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
..|+|+.+... .+ ..+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. |+.+.|+|.
T Consensus 14 ~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~ 92 (113)
T 2g5m_B 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-KGRVRFMIG 92 (113)
T ss_dssp SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS-CSSCEEEEE
T ss_pred CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEE
Confidence 35788887651 11 0123479999999999999999 999999999999999988777777777654 789999998
Q ss_pred cCCCC
Q 012890 254 HGNCG 258 (454)
Q Consensus 254 r~~~~ 258 (454)
|++..
T Consensus 93 R~~~~ 97 (113)
T 2g5m_B 93 RERPG 97 (113)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 87643
No 117
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=7.7e-09 Score=83.01 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=59.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+..-.+.+ ..++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..+.|+|.|+.
T Consensus 15 ~~glG~~l~~~~~~~--~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 90 (93)
T 2dkr_A 15 DEGLGFNIMGGKEQN--SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSVKLVVRSGP 90 (93)
T ss_dssp TTCCCEEEECSSSSS--CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred CCCccEEEecccCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence 468899987421112 368999999999999996 999999999999999988777887777654 457999998764
No 118
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.80 E-value=8.9e-09 Score=84.14 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=50.9
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNC 257 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~~ 257 (454)
+++|..|.++|||++ ||++||+|++|||+++.++ .++...+.. ..|+.+.+++.|++.
T Consensus 8 Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~ 66 (100)
T 3i18_A 8 GVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDK 66 (100)
T ss_dssp CEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred CEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 588999999999995 9999999999999999988 777777765 578999999999764
No 119
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.80 E-value=3.1e-09 Score=83.58 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=57.4
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
.|+|+.+.. .. +++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..++|+|.|+
T Consensus 13 ~g~G~~~~~---~~---~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 81 (83)
T 2kv8_A 13 AGYGFTLSG---QA---PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVIAEG 81 (83)
T ss_dssp SCCSCBCCC---SS---SCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CcccEEEEc---CC---CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 577876643 22 47899999999999999999999999999999999878888888654 46699999875
No 120
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.79 E-value=2.1e-08 Score=81.27 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=60.6
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r~~ 256 (454)
...|+|+.+... . .+++|..|.+ +|+++||++||+|++|||+++.+++.+++.+++++. .|+.+.|+|.|++
T Consensus 19 ~~~g~G~~i~~~---~--~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 91 (96)
T 1ujv_A 19 GAQGFGFTIADS---P--TGQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS 91 (96)
T ss_dssp CSSSSSEEEEEE---T--TEEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCS
T ss_pred CCCceeEEEEcC---C--CCEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECC
Confidence 457899998642 1 1588999988 378899999999999999999998888888888875 4899999999875
Q ss_pred C
Q 012890 257 C 257 (454)
Q Consensus 257 ~ 257 (454)
.
T Consensus 92 ~ 92 (96)
T 1ujv_A 92 G 92 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 121
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.79 E-value=5.5e-09 Score=83.79 Aligned_cols=67 Identities=19% Similarity=0.373 Sum_probs=55.4
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..++|+.+.. | +|..|.++|||+++||++||+|++|||+++.+.+..++.++++. .|+.+.|+|.+.
T Consensus 23 ~~~lG~~~~~-----G----~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~p~ 89 (90)
T 1y7n_A 23 RYQLGFSVQN-----G----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHMKTMPA 89 (90)
T ss_dssp TSCCCEEEET-----T----EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH-CCEEEEEEEECC
T ss_pred ccccCeEecC-----C----EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 4567877632 2 78999999999999999999999999999987777888888874 478899888753
No 122
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.79 E-value=1.4e-08 Score=83.71 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=60.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC--CCCCCEEEeeCCEEccCCCHHHHHHhhCCCC---CcEEEEEEE
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG--VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS---ETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG--L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~---g~~v~l~v~ 253 (454)
..++||.+....+. ...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... +..+.|+|+
T Consensus 28 ~~~~G~~~~gg~~~--~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~ 105 (107)
T 3nfk_A 28 NGRFGFNVKGGYDQ--KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105 (107)
T ss_dssp TSCCCEEEEEEGGG--TEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEE
T ss_pred CCCCCEEEEccCCC--CCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEE
Confidence 35788887652221 1368999999999999999 9999999999999999998778877776643 358888887
Q ss_pred cC
Q 012890 254 HG 255 (454)
Q Consensus 254 r~ 255 (454)
|+
T Consensus 106 r~ 107 (107)
T 3nfk_A 106 PN 107 (107)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 123
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.79 E-value=1.5e-09 Score=87.28 Aligned_cols=57 Identities=12% Similarity=0.299 Sum_probs=50.8
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEcCCC
Q 012890 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNC 257 (454)
Q Consensus 198 ~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r~~~ 257 (454)
++|..|.++|||++ ||++||+|++|||+++.++ .++..++... .|+.++|+|.|++.
T Consensus 3 v~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 60 (91)
T 2kjp_A 3 IYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEK 60 (91)
T ss_dssp SSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSC
T ss_pred eEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCE
Confidence 56788999999999 9999999999999999987 7888888775 79999999999764
No 124
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.79 E-value=1.5e-08 Score=80.68 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=56.1
Q ss_pred eeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 181 glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
++|+.+.. +++|..|.++|||+++| |+.||+|++|||+++.+.+.+++.+++++..+ ++.|++.+.
T Consensus 14 ~~G~~~~~--------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~-~v~L~v~~~ 80 (88)
T 3e17_A 14 EYGLRLGS--------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRD 80 (88)
T ss_dssp CCCEEEEE--------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTT-EEEEEECCC
T ss_pred CCCEEEeC--------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEeCC
Confidence 56776653 68999999999999999 99999999999999988888888888887544 788888654
No 125
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=1.3e-08 Score=84.41 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=61.7
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~-~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++.. ++.+.|+|.|++
T Consensus 18 ~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 96 (110)
T 1um1_A 18 PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKSD 96 (110)
T ss_dssp TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 35899998752111 012358999999999999999 999999999999999987777777777664 889999999875
No 126
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.78 E-value=1.5e-08 Score=80.24 Aligned_cols=73 Identities=27% Similarity=0.439 Sum_probs=57.7
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhh-cCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~-aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..++|+.+..-.+.+ ..++|..|.++|||++ +||++||+|++|||+++.+++..++..+++. .+..+.|+|++
T Consensus 13 ~~~lG~~i~~~~~~~--~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~~ 86 (87)
T 4e34_A 13 HEGLGISITGGKEHG--VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVY 86 (87)
T ss_dssp TBCCCEEEEEEGGGT--EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CCcccEEEEccCCCC--CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 457888886522211 3689999999999999 7999999999999999998887888777764 45678887753
No 127
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.78 E-value=1.5e-08 Score=83.57 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=58.8
Q ss_pred ceeeeEEEEEeeCC----CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~----~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..|+|+.+..-.+. .+..+++|..|.++|||+ +||++||+|++|||+++.++...+....+. ..|+.+.++|.|
T Consensus 18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 95 (107)
T 2h2b_A 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KSGKNAKITIRR 95 (107)
T ss_dssp TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEE
T ss_pred CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CCCCEEEEEEEE
Confidence 46899998752221 012368999999999999 999999999999999999986554443333 568899999988
Q ss_pred CCC
Q 012890 255 GNC 257 (454)
Q Consensus 255 ~~~ 257 (454)
++.
T Consensus 96 ~~~ 98 (107)
T 2h2b_A 96 KKG 98 (107)
T ss_dssp ESC
T ss_pred CCC
Confidence 654
No 128
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.77 E-value=1.1e-08 Score=84.53 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=58.1
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+.. .. .+++|..|.++|||+++| |++||+|++|||+++.+.+..++..++++. +..+.|+|.|..
T Consensus 13 ~~glG~~i~~--~~---~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 85 (106)
T 2la8_A 13 GKELGLSLSP--NE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRPK 85 (106)
T ss_dssp SSTTCCEEEE--CS---SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSC-BSCEEEEEEECC
T ss_pred CCccCEEEEe--CC---CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCC
Confidence 4577887765 11 258999999999999999 999999999999999987767776677664 456999998754
No 129
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.77 E-value=1.1e-08 Score=81.35 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=48.3
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~ 256 (454)
++.|..+.++|||+++||++||+|++|||+++.++ .++..++.. ..|+.+++++.|++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g 78 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDG 78 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETT
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 45677777777889999999999999999999988 666666654 46889999999876
No 130
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.77 E-value=1.5e-08 Score=86.52 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=62.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGP 259 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~~ 259 (454)
.++|+.+....+ ...+++|..|.++|||+++||++||+|++|||+++.++...++...++. +..+.|+|.|++...
T Consensus 32 ~~lG~~~~~~~~--~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~~ 107 (128)
T 1uf1_A 32 RSLGLTIRGGAE--YGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLILTVKDVGRLP 107 (128)
T ss_dssp CCCCEEEECCTT--TTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEEEEEECCSCCS
T ss_pred CccCEEEECccc--CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEECCccc
Confidence 457887764211 1125889999999999999999999999999999999876677777754 469999999987654
Q ss_pred eeEEEe
Q 012890 260 IESIQV 265 (454)
Q Consensus 260 ~~~v~l 265 (454)
..++++
T Consensus 108 ~~~v~~ 113 (128)
T 1uf1_A 108 HARTTV 113 (128)
T ss_dssp SCSCCC
T ss_pred cccccc
Confidence 444443
No 131
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.5e-08 Score=81.30 Aligned_cols=71 Identities=24% Similarity=0.421 Sum_probs=58.6
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
...++|+.+.. .+. .++|..|.++|||+++| |++||+|++|||+++ +.+.+++.++++.. +..+.|+|.|.
T Consensus 16 ~~~~lG~~i~~---~~~--~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 16 AGEHLGVTFRV---EGG--ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp TTCCCCEEEEE---SSS--SEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CCCcEeEEEEe---cCC--CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 34678999876 222 58999999999999987 999999999999999 66668888888764 66788888764
No 132
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.76 E-value=8.8e-09 Score=85.66 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=61.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..++|+.+.... + .+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+|.|++.
T Consensus 25 ~~~lG~~l~~~~--~--~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 25 GSGLGFGIVGGK--T--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPA 99 (111)
T ss_dssp SSCCCEEEECCS--S--SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCT
T ss_pred CCccCEEEeccC--C--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 357888887421 1 258999999999999999 99999999999999998877888777765 47889999988654
No 133
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.4e-08 Score=85.09 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=58.4
Q ss_pred eeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 181 glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
++|+.+....+. +..+++|..|.++|||+++||++||+|++|||+++..+...++..++++ ..+.|+|+|..
T Consensus 30 ~~G~~v~~~~~~-~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 30 TYGFSLSSVEED-GIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp CCCCEEEEEEET-TEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred ccCEEEEecCcC-CcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 577777654332 3247899999999999999999999999999999998766788888875 38888888754
No 134
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.76 E-value=6.1e-09 Score=87.81 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=63.7
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
...++||.+..-.+. ....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++...++.+.++++|++
T Consensus 25 ~~~~lG~~i~g~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~ 103 (119)
T 1x6d_A 25 EGAGLGFSLAGGADL-ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103 (119)
T ss_dssp TTSCCSEEEECCSSS-SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECC
T ss_pred CCCccCEEEeCCCCC-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 457899998752221 11258999999999999999 9999999999999999887788888887777777778888765
Q ss_pred C
Q 012890 257 C 257 (454)
Q Consensus 257 ~ 257 (454)
.
T Consensus 104 ~ 104 (119)
T 1x6d_A 104 T 104 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 135
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.76 E-value=1.2e-08 Score=85.36 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=62.8
Q ss_pred ceeeeEEEEEeeCC--CCc---eEEEEEEEcCCChhhh-cCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEE
Q 012890 179 MSGIGINLREVPDA--NGV---VTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (454)
Q Consensus 179 ~~glGi~~~~~~d~--~g~---~~~~V~~V~~~spA~~-aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v 252 (454)
..++||.+....+. .+. ..++|..|.++|||++ +||++||+|++|||+++.+++..++..+++. .++.+.|+|
T Consensus 21 ~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v 99 (114)
T 1uew_A 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRI 99 (114)
T ss_dssp TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEE
T ss_pred CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 45899998642211 121 1358999999999999 9999999999999999999877888888876 789999999
Q ss_pred EcCCC
Q 012890 253 KHGNC 257 (454)
Q Consensus 253 ~r~~~ 257 (454)
.|++.
T Consensus 100 ~r~~~ 104 (114)
T 1uew_A 100 IPQEE 104 (114)
T ss_dssp CCCSC
T ss_pred EeCCc
Confidence 88753
No 136
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.75 E-value=2.7e-08 Score=83.52 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=58.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.++|+.+.... + .+++|..|.++|||+++||++||+|++|||+++.++...+....+. ..++.+.|+|.|++.
T Consensus 30 ~~lG~~~~~~~--~--~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~ 102 (117)
T 1uit_A 30 EPLGISIVSGE--K--GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG-QQCDTITILAQYNPH 102 (117)
T ss_dssp CCCCEEEEECT--T--SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEEECCCSC
T ss_pred CCccEEEEccC--C--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCc
Confidence 57788876521 1 2689999999999999999999999999999999986555543333 568899999988754
No 137
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.75 E-value=2e-08 Score=85.44 Aligned_cols=75 Identities=29% Similarity=0.395 Sum_probs=60.4
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
...++|+.+..-.+. ...++|..|.++|||+++| |++||+|++|||+++.+++..++..++++..+ .++++|.|.
T Consensus 29 ~~~~lG~~i~gg~~~--~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~ 104 (125)
T 3hpk_A 29 AQNLIGISIGGGAQY--CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIHYNKL 104 (125)
T ss_dssp TTSCCCEEEEECSSC--CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS-EEEEEEEEE
T ss_pred CCCCcCEEEeccCCC--CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEEC
Confidence 346789988752211 1258899999999999999 99999999999999998887888888877544 599998773
No 138
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.74 E-value=2.8e-08 Score=81.87 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=46.5
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~ 256 (454)
++.|..+.++|||+++||++||+|++|||+++.++ .++..++.. ..|+.+.++|.|++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g 96 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDG 96 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETT
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECC
Confidence 34566666666779999999999999999999998 556555543 56889999999876
No 139
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.74 E-value=2.2e-08 Score=89.95 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=62.4
Q ss_pred ceeeeEEEEEe---eC-CCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 179 MSGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~---~d-~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
..|+|+.+... .+ ..+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+|++ .+..|+|+|.
T Consensus 90 ~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~ 168 (170)
T 3egg_C 90 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIG 168 (170)
T ss_dssp TTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEE
T ss_pred CCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEE
Confidence 35899998752 11 0122468999999999999999 99999999999999999988888888887 5789999998
Q ss_pred cC
Q 012890 254 HG 255 (454)
Q Consensus 254 r~ 255 (454)
|+
T Consensus 169 R~ 170 (170)
T 3egg_C 169 RE 170 (170)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 140
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.74 E-value=2.3e-08 Score=82.07 Aligned_cols=76 Identities=28% Similarity=0.406 Sum_probs=61.1
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
...++||.+..-.+. ...++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++... ..++|++.+..
T Consensus 19 ~~~~lG~~l~~g~~~--~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~ 95 (103)
T 2dc2_A 19 DHEGLGISITGGKEH--GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVYVA 95 (103)
T ss_dssp SSSCCCEEEEEEGGG--TEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC-SEEEEEEEECC
T ss_pred CCCccCEEEEeccCC--CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEecC
Confidence 346889988753221 136899999999999995 99999999999999999988888888887654 48899887754
No 141
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.73 E-value=2.8e-08 Score=90.99 Aligned_cols=74 Identities=31% Similarity=0.448 Sum_probs=62.7
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+..-.+ ...+++|..|.++|||+++||++||+|++|||+++.+++..++..+++. |..+.|+|.|++
T Consensus 95 ~~~lG~~i~~~~~--~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g 168 (192)
T 3k1r_A 95 PEGLGLSVRGGLE--FGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIG 168 (192)
T ss_dssp TTCCCEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECC
T ss_pred CCceeEEEEcccc--cCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECC
Confidence 4588998864221 1247899999999999999999999999999999999777888888877 889999999875
No 142
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.73 E-value=2.6e-08 Score=85.13 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=61.2
Q ss_pred ceeeeEEEEEeeCC----C---CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEE
Q 012890 179 MSGIGINLREVPDA----N---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTI 250 (454)
Q Consensus 179 ~~glGi~~~~~~d~----~---g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l 250 (454)
..++||.+....+. . ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .+..+.|
T Consensus 41 ~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l 119 (128)
T 1nf3_C 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA-NSRNLII 119 (128)
T ss_dssp TSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHH-TTTSEEE
T ss_pred CCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 46789888743210 0 01368999999999999999 99999999999999988887888888874 3556999
Q ss_pred EEEcCC
Q 012890 251 EVKHGN 256 (454)
Q Consensus 251 ~v~r~~ 256 (454)
+|.|++
T Consensus 120 ~v~r~~ 125 (128)
T 1nf3_C 120 TVRPAN 125 (128)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 998875
No 143
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.73 E-value=3.6e-09 Score=86.45 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=58.4
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
...++|+.+.. . ..++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..+.|+|.|+.
T Consensus 24 ~~~g~G~~~~~---~---~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 95 (100)
T 1whd_A 24 GKDGFGFTICC---D---SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRVS 95 (100)
T ss_dssp CSSSSSCBCCC---S---SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCeeeEEEeC---C---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 34577877653 2 247899999999999999999999999999999988778888877664 345999998864
No 144
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.73 E-value=6e-08 Score=96.00 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=62.3
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEc-C
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKH-G 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r-~ 255 (454)
.++.+|+.+...... .+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. ..|++++|+|.| +
T Consensus 227 ~~~~lGi~~~~~~~~---~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~ 301 (324)
T 1y8t_A 227 SHASLGVQVTNDKDT---LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS 301 (324)
T ss_dssp CCEECCEEEESCSSS---SSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSS
T ss_pred cccccceEeeeccCC---CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 357889988753222 358899999999999999999999999999999988 677777754 679999999999 7
Q ss_pred CCC
Q 012890 256 NCG 258 (454)
Q Consensus 256 ~~~ 258 (454)
++.
T Consensus 302 g~~ 304 (324)
T 1y8t_A 302 GGS 304 (324)
T ss_dssp CCE
T ss_pred CCE
Confidence 643
No 145
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.72 E-value=3.5e-08 Score=82.66 Aligned_cols=74 Identities=30% Similarity=0.394 Sum_probs=57.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..++|+.+....+ ....++|..|.++|||+++| |++||+|++|||+++.+.+..++..++++..+ .++|+|++.
T Consensus 35 ~~~lG~~l~~~~~--~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~ 109 (114)
T 2gzv_A 35 QNLIGISIGGGAQ--YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIHYNKL 109 (114)
T ss_dssp TSCCSEEEEECCC----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-EEEEEEECC
T ss_pred CCcEeEEEEeCCC--CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEec
Confidence 4568998875221 11248999999999999999 99999999999999976666888888875544 588888654
No 146
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.72 E-value=6.6e-09 Score=83.11 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=53.1
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEe
Q 012890 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQV 265 (454)
Q Consensus 198 ~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~~~~~v~l 265 (454)
++|..|.++|||+++||+.||+|++|||+++.++ .++...+....|+.+.+++.|++ ...++++
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g--~~~~~~v 69 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQG--SPLSLTL 69 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETT--EEEEEEE
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECC--eEEEEEE
Confidence 4678899999999999999999999999999987 77777776667889999999875 3344444
No 147
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.72 E-value=1.1e-08 Score=86.27 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=61.3
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhc--CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCC---CcEEEEEE
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA--GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS---ETFVTIEV 252 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~a--GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~---g~~v~l~v 252 (454)
...++||.+..-.+. ...++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++... +..+.|+|
T Consensus 25 ~~~~~G~~l~gg~~~--~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v 102 (119)
T 2cs5_A 25 ENGRFGFNVKGGYDQ--KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 102 (119)
T ss_dssp SSSCCSEEEEEEGGG--TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCcCEEEecccCC--CCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEE
Confidence 345689988752221 135899999999999999 99999999999999999988788877776543 35899999
Q ss_pred EcCC
Q 012890 253 KHGN 256 (454)
Q Consensus 253 ~r~~ 256 (454)
.|+.
T Consensus 103 ~R~~ 106 (119)
T 2cs5_A 103 RPNA 106 (119)
T ss_dssp ECCC
T ss_pred Eccc
Confidence 8865
No 148
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.71 E-value=2.8e-08 Score=83.68 Aligned_cols=74 Identities=31% Similarity=0.458 Sum_probs=59.3
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+....+ ..+++|..|.++|||+++| |++||+|++|||+++.++...+....++. .+..+.|++.|.+
T Consensus 24 ~~glG~~l~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 24 STGLGFNIVGGED---GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp TSCCCEEEEECGG---GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCCccEEEecCCC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 3579999886322 1368999999999999999 99999999999999999876555555554 4778999998753
No 149
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.71 E-value=1.2e-08 Score=84.44 Aligned_cols=78 Identities=28% Similarity=0.432 Sum_probs=60.7
Q ss_pred ceeeeEEEEEeeCC------CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEE
Q 012890 179 MSGIGINLREVPDA------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251 (454)
Q Consensus 179 ~~glGi~~~~~~d~------~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~ 251 (454)
..++|+.+....+. ....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+
T Consensus 19 ~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~ 97 (108)
T 1q7x_A 19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLL 97 (108)
T ss_dssp SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEE
T ss_pred CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEE
Confidence 35788888722110 011368899999999999999 99999999999999997766777777765 47899999
Q ss_pred EEcCCC
Q 012890 252 VKHGNC 257 (454)
Q Consensus 252 v~r~~~ 257 (454)
|.|++.
T Consensus 98 v~R~~~ 103 (108)
T 1q7x_A 98 LEKGQS 103 (108)
T ss_dssp EECCCC
T ss_pred EEeCCc
Confidence 998753
No 150
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.71 E-value=1.6e-08 Score=85.32 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=55.0
Q ss_pred eEEEEEEEcC--CChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 196 VTLKVLGLIL--DGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 196 ~~~~V~~V~~--~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.+++|..|.+ +|||++|||++||+|++|||+++.+++.+++..++... |+.+.|+|.|++.
T Consensus 44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 3789999999 99999999999999999999999998777888888777 8899999998764
No 151
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.71 E-value=3.4e-08 Score=79.54 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=62.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~ 256 (454)
.++|+.+.. ++....+|.++.++|||++.| |+.||+|++|||+++.+++.+++.++|+. +.|.+++|++.++.
T Consensus 16 ~~LG~tI~~----~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~ 90 (95)
T 3gge_A 16 DSLGLTITD----NGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90 (95)
T ss_dssp SCCCEEEEC----SSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred CCceEEEEc----CCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECcc
Confidence 688998863 222357899999999999998 99999999999999999999999999976 67889999887654
No 152
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.70 E-value=4.4e-08 Score=78.95 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=57.7
Q ss_pred eeeEEEEEeeCC------CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 181 GIGINLREVPDA------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 181 glGi~~~~~~d~------~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
++||.+.--.+. ....+++|..|.++|||++ ||++||+|++|||+++.++...++...++ ..++.+.|+|.|
T Consensus 14 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R 91 (95)
T 1mfg_A 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 91 (95)
T ss_dssp SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEE
T ss_pred CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 788888742110 0123689999999999999 99999999999999999887667666665 457899999987
Q ss_pred CC
Q 012890 255 GN 256 (454)
Q Consensus 255 ~~ 256 (454)
+.
T Consensus 92 ~~ 93 (95)
T 1mfg_A 92 EV 93 (95)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 153
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=6.3e-09 Score=85.76 Aligned_cols=75 Identities=25% Similarity=0.292 Sum_probs=59.7
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..++|+.+.... +..+++|..|.++|||+++||++||+|++|||+++..++..++..+++. .+..+.+++.|.+.
T Consensus 18 ~~~~G~~l~~~~---~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 18 GGSYGFSLKTVQ---GKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp SSSCSCCEECCS---SCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCCCEEEEecc---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 457888876422 2235789999999999999999999999999999998877777766654 36789999987653
No 154
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.2e-08 Score=84.47 Aligned_cols=76 Identities=26% Similarity=0.417 Sum_probs=60.6
Q ss_pred eeeeEEEEEeeCCC---CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~~---g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
.++||.+..-.+.. +...++|..|.++|||+++| |++||+|++|||+++.++...++..+++.. ++.++|+|.|+
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~ 106 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA-GYAVSLRVQHR 106 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH-CSEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeC
Confidence 68999987522110 12368999999999999999 999999999999999998767777777653 77899999875
Q ss_pred C
Q 012890 256 N 256 (454)
Q Consensus 256 ~ 256 (454)
.
T Consensus 107 ~ 107 (120)
T 2eno_A 107 L 107 (120)
T ss_dssp E
T ss_pred C
Confidence 3
No 155
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.14 E-value=1.9e-09 Score=90.12 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=63.0
Q ss_pred CCCCceecChHHhhhh-----ccCcceeeeEEEEEeeCCCCceEEEEEEEcCCChhhh-cCCCCCCEEEeeCCEEccCCC
Q 012890 159 GDPYTRFLSPAEFSKM-----ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKS 232 (454)
Q Consensus 159 ~D~Ht~~l~~~~~~~~-----~~~~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~-aGL~~GD~Il~InG~~v~~~~ 232 (454)
.|+|..++....+... .+....|+|+.+..-.+. ..+++|..|.++|||++ +||++||+|++|||+++.+.+
T Consensus 13 ~~~~~~~me~~~~~~~~~v~l~k~~~~glG~~l~~g~~~--~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~ 90 (112)
T 2lob_A 13 GHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEH--GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90 (112)
Confidence 4666666554433221 122346888887642111 12588999999999999 999999999999999998766
Q ss_pred HHHHHHhhCCCCCcEEEEEEE
Q 012890 233 AFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 233 ~~~~~~~l~g~~g~~v~l~v~ 253 (454)
..++..+++.. +..++|+|+
T Consensus 91 ~~~~~~~l~~~-~~~v~l~V~ 110 (112)
T 2lob_A 91 HKEAVTILSQQ-RGEIEFEVV 110 (112)
Confidence 67777777654 334666653
No 156
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.68 E-value=7.4e-09 Score=83.66 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=51.0
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCC-CCcEEEEEEEcCCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNC 257 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~-~g~~v~l~v~r~~~ 257 (454)
+++|..|.++|||++ ||++||+|++|||+++.++ .++..++... .|+.++++|.|++.
T Consensus 6 Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 64 (94)
T 2kl1_A 6 GVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRK 64 (94)
T ss_dssp CEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTE
T ss_pred cEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 588999999999999 9999999999999999987 6777777654 78999999999763
No 157
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.68 E-value=2.9e-08 Score=84.32 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=61.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..++|+.+....+. ....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..+.|+|.|++.
T Consensus 35 ~~glG~~l~~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 112 (124)
T 2daz_A 35 KNGLGLSLAGNKDR-SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-PSKVKLVFIRNED 112 (124)
T ss_dssp SSCCCEEEECBSST-TSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-CSEEEEEEEECTT
T ss_pred CCccCEEEeccCCC-CcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence 45889998753221 11368999999999999999 999999999999999988777777777654 4589999988653
No 158
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.5e-08 Score=82.65 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=57.9
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
.++|+.+..-.+. ...++|..|.++|||+++ ||++||+|++|||+++.++ ..++..+++.. ++.+.|+|.|++.
T Consensus 21 ~~~G~~~~gg~~~--~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~-~~~v~l~v~R~~~ 95 (100)
T 2edp_A 21 APWGFTLKGGLEH--CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGS-FRILKLIVRRRNS 95 (100)
T ss_dssp SCCCCCEEEEGGG--TEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTC-CSSCEEEEEECCC
T ss_pred CCcCEEEeccCCC--CCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 4678877642111 135889999999999999 9999999999999999986 46666677654 6889999988753
No 159
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.68 E-value=1.4e-08 Score=84.37 Aligned_cols=78 Identities=23% Similarity=0.228 Sum_probs=62.8
Q ss_pred cceeeeEEEEEeeCC-------CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEE
Q 012890 178 DMSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVT 249 (454)
Q Consensus 178 ~~~glGi~~~~~~d~-------~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~ 249 (454)
...++||.+....+. +....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.
T Consensus 19 ~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~ 97 (111)
T 1uju_A 19 PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLT 97 (111)
T ss_dssp TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEE
T ss_pred CCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEE
Confidence 346899998752210 112358999999999999999 99999999999999998877888888876 578999
Q ss_pred EEEEcCC
Q 012890 250 IEVKHGN 256 (454)
Q Consensus 250 l~v~r~~ 256 (454)
|+|.|+.
T Consensus 98 l~v~r~~ 104 (111)
T 1uju_A 98 VLVCDGF 104 (111)
T ss_dssp ECCCCCC
T ss_pred EEEEECC
Confidence 9998764
No 160
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.67 E-value=6.4e-08 Score=95.61 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=63.0
Q ss_pred ceeeeEEEEEeeCC-------CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEE
Q 012890 179 MSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTI 250 (454)
Q Consensus 179 ~~glGi~~~~~~d~-------~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l 250 (454)
.+.+|+.+..++.. +...+++|..|.++|||++|||++||+|++|||+++.++ .++..+++. ..|+.++|
T Consensus 220 ~~~lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l 297 (318)
T 1te0_A 220 RGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPV 297 (318)
T ss_dssp CEECCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEE
T ss_pred cccceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEE
Confidence 45678887764321 011368999999999999999999999999999999987 778777876 68999999
Q ss_pred EEEcCCCC
Q 012890 251 EVKHGNCG 258 (454)
Q Consensus 251 ~v~r~~~~ 258 (454)
+|.|++..
T Consensus 298 ~v~R~g~~ 305 (318)
T 1te0_A 298 VVMRDDKQ 305 (318)
T ss_dssp EEESSSCE
T ss_pred EEEECCEE
Confidence 99998643
No 161
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.67 E-value=4.3e-08 Score=80.90 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=60.2
Q ss_pred ceeeeEEEEEeeCC------CCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEE
Q 012890 179 MSGIGINLREVPDA------NGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251 (454)
Q Consensus 179 ~~glGi~~~~~~d~------~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~ 251 (454)
..++||.+..-.+. .....++|..|.++|||+++ ||++||+|++|||+++.+.+..++..+++. .+..+.|+
T Consensus 18 ~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~ 96 (107)
T 1uhp_A 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQ 96 (107)
T ss_dssp SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEE
T ss_pred CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEE
Confidence 46789988642110 01236899999999999999 999999999999999998877777777765 46788898
Q ss_pred EEcCC
Q 012890 252 VKHGN 256 (454)
Q Consensus 252 v~r~~ 256 (454)
|.|..
T Consensus 97 v~R~~ 101 (107)
T 1uhp_A 97 VLRRT 101 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 87754
No 162
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.66 E-value=2.6e-08 Score=83.00 Aligned_cols=64 Identities=25% Similarity=0.440 Sum_probs=53.0
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEee
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~~~~~v~l~ 266 (454)
+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. ++.+.+++.|++. ..+++++
T Consensus 36 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~--~~~~~v~ 99 (113)
T 2pzd_A 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRE--TLTLYVT 99 (113)
T ss_dssp CEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH--CSSEEEEEEETTE--EEEEEEC
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCE--EEEEEEE
Confidence 58899999999999999999999999999999976 777777754 6789999998753 3444443
No 163
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.66 E-value=1.2e-07 Score=79.17 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=59.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNC 257 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~~ 257 (454)
..|+||.+... .. ...|..+.+ |++.+||++||+|++|||+++.+++.+++.++|+. +.|+.+.|+|.|++.
T Consensus 22 ~~G~GFsI~~~--~~---g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 22 PKGFGFAIADS--PT---GQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TTBSSEEEEEE--TT---EEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CCcccEEEeCC--CC---CcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 45899999542 11 345888887 68899999999999999999999998899999985 679999999999764
No 164
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.65 E-value=4.4e-08 Score=81.79 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=58.8
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
...++|+.+....+.. .+++|..|.++|||+++||++||+|++|||+++.++...++..+++.. ..+.++|.|+
T Consensus 25 ~~~~lG~~l~~~~~~~--~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~--~~v~l~v~r~ 98 (114)
T 1x5n_A 25 GSRGLGCSISSGPIQK--PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS--RSLTISIVAA 98 (114)
T ss_dssp SSCCCCEEEEECCSSS--CSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC--SSEEEEECSS
T ss_pred CCCceeEEEeecCCCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEcC
Confidence 3467899987532222 258999999999999999999999999999999998765566666532 5788999886
No 165
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.64 E-value=9.6e-08 Score=86.89 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=61.0
Q ss_pred ceeeeEEEEEeeCCC---CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~~---g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..|+||.+..-.+.. +..+++|..|.++|||+++| |+.||+|++|||+++.+++..++...++. .++.+.+++.|
T Consensus 15 ~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r 93 (196)
T 3gsl_A 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR 93 (196)
T ss_dssp TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEE
T ss_pred CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEe
Confidence 457898887522210 12368999999999999999 99999999999999999977666656654 47899999988
Q ss_pred CCC
Q 012890 255 GNC 257 (454)
Q Consensus 255 ~~~ 257 (454)
++.
T Consensus 94 ~~~ 96 (196)
T 3gsl_A 94 RKP 96 (196)
T ss_dssp ECC
T ss_pred cCC
Confidence 653
No 166
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.63 E-value=5.5e-08 Score=81.58 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=60.4
Q ss_pred ceeeeEEEEEeeCC-------CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEE
Q 012890 179 MSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTI 250 (454)
Q Consensus 179 ~~glGi~~~~~~d~-------~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l 250 (454)
..++||.+..-.+. .....++|..|.++|||+++| |++||+|++|||+++.+....++..+++. .++.+.|
T Consensus 26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l 104 (117)
T 2ehr_A 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVF 104 (117)
T ss_dssp SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEE
T ss_pred CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 46788887531110 011368999999999999999 99999999999999998877777777765 4788999
Q ss_pred EEEcCC
Q 012890 251 EVKHGN 256 (454)
Q Consensus 251 ~v~r~~ 256 (454)
+|.|..
T Consensus 105 ~v~r~~ 110 (117)
T 2ehr_A 105 IVQSLS 110 (117)
T ss_dssp EECCBS
T ss_pred EEEECC
Confidence 997754
No 167
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.63 E-value=2.4e-08 Score=82.09 Aligned_cols=77 Identities=22% Similarity=0.425 Sum_probs=60.5
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCC----CCcEEEEEEE
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP----SETFVTIEVK 253 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~----~g~~v~l~v~ 253 (454)
..|+||.+.--.+. +...++|..|.+++||+++| |++||+|++|||+++.+++.+++.++|+.. .++.+++++.
T Consensus 16 ~~glG~~i~gg~~~-~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~ 94 (103)
T 1ufx_A 16 AATLGIAIEGGANT-RQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT 94 (103)
T ss_dssp SSSCCEEEECBTTS-SCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred CCcCCeEEECCCCC-CCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 46899998742211 11124899999999999999 999999999999999998878888887653 5778888887
Q ss_pred cCC
Q 012890 254 HGN 256 (454)
Q Consensus 254 r~~ 256 (454)
|.+
T Consensus 95 r~~ 97 (103)
T 1ufx_A 95 EFN 97 (103)
T ss_dssp CCC
T ss_pred Ecc
Confidence 764
No 168
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.62 E-value=2.3e-08 Score=84.04 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=60.4
Q ss_pred cceeeeEEEEEeeCCC----CceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 178 DMSGIGINLREVPDAN----GVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~----g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
...++||.+..-.+.. +...++|..|.++|||+ +||++||+|++|||+++.+++..++...++. .++.+.|+|.
T Consensus 24 ~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 101 (117)
T 2csj_A 24 SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVK 101 (117)
T ss_dssp SSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEE
T ss_pred CCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEE
Confidence 3468999987522110 12358999999999997 8999999999999999999877777777765 4789999998
Q ss_pred cCC
Q 012890 254 HGN 256 (454)
Q Consensus 254 r~~ 256 (454)
|.+
T Consensus 102 R~~ 104 (117)
T 2csj_A 102 RPR 104 (117)
T ss_dssp EEE
T ss_pred ECC
Confidence 754
No 169
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.62 E-value=7.3e-08 Score=89.44 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=56.2
Q ss_pred eEEEEEEEcCCChhhhcCCCCC-CEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEee
Q 012890 196 VTLKVLGLILDGPAHSAGVRQG-DEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (454)
Q Consensus 196 ~~~~V~~V~~~spA~~aGL~~G-D~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~~~~~v~l~ 266 (454)
.+++|..|.++|||++|||++| |+|++|||+++.++... ...++....|+.++++|.|++.....++++.
T Consensus 16 ~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~-~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~ 86 (209)
T 3rle_A 16 EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT-LKDLLKANVEKPVKMLIYSSKTLELRETSVT 86 (209)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSH-HHHHHHHTTTSCEEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHH-HHHHHhcCCCCEEEEEEEecCCceEEEEEEc
Confidence 5789999999999999999999 99999999999988421 2234444668999999988766666666663
No 170
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.62 E-value=4.3e-08 Score=80.27 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=58.4
Q ss_pred eeeeEEEEEeeCC------CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEE
Q 012890 180 SGIGINLREVPDA------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (454)
Q Consensus 180 ~glGi~~~~~~d~------~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~ 253 (454)
.++||.+..-.+. ....+++|..|.++|||++ ||++||+|++|||+++.+....++...++ ..++.++|+|.
T Consensus 21 ~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~ 98 (103)
T 1n7t_A 21 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIV 98 (103)
T ss_dssp SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEE
T ss_pred CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEE
Confidence 3788888751110 0123689999999999999 99999999999999999887677766665 45789999998
Q ss_pred cCC
Q 012890 254 HGN 256 (454)
Q Consensus 254 r~~ 256 (454)
|+.
T Consensus 99 R~~ 101 (103)
T 1n7t_A 99 REV 101 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 853
No 171
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.60 E-value=1.3e-07 Score=86.43 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=55.0
Q ss_pred eEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc---CCCCCeeEEEee
Q 012890 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH---GNCGPIESIQVQ 266 (454)
Q Consensus 196 ~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r---~~~~~~~~v~l~ 266 (454)
.+++|..|.++|||++ ||++||+|++|||+++.+....++...++.. +..+.|+|.| ++.....++++.
T Consensus 24 ~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~~ 95 (195)
T 2qbw_A 24 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRVE 95 (195)
T ss_dssp CSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEee
Confidence 3689999999999999 9999999999999999998777777777654 4489999988 443333344443
No 172
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.59 E-value=3.8e-08 Score=81.90 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=52.5
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEee
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~~~~~v~l~ 266 (454)
+++|..|.++|||+++||++||+|++|||+++.++ .++...+ ..|+.+.+++.|++ ...+++++
T Consensus 36 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l--~~g~~v~l~v~R~g--~~~~~~v~ 99 (112)
T 2p3w_A 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAV--LTESPLLLEVRRGN--DDLLFSIA 99 (112)
T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHH--HHCSSEEEEEEETT--EEEEEEEC
T ss_pred CeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHH--hCCCeEEEEEEECC--EEEEEEEE
Confidence 58899999999999999999999999999999977 6776666 35778999999875 33444443
No 173
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.59 E-value=2e-08 Score=83.72 Aligned_cols=71 Identities=27% Similarity=0.316 Sum_probs=57.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
..++|+.+.. . ..++|..|.+++||+++||+.||+|++|||+++..++.+++.++++...++.+.|+|.+.
T Consensus 25 ~~~~G~~l~~---~---~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~ 95 (111)
T 1vae_A 25 EGDLGFTLRG---N---TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95 (111)
T ss_dssp SSCCSCCEES---S---SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred CCcccEEEeC---C---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence 3567777643 1 147789999999999999999999999999999966668888888776677888888764
No 174
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.59 E-value=8.1e-08 Score=96.00 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=64.4
Q ss_pred ceeeeEEEEEeeCC-------CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEE
Q 012890 179 MSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTI 250 (454)
Q Consensus 179 ~~glGi~~~~~~d~-------~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l 250 (454)
.+.+|+.++.+..+ +...+++|..|.++|||++|||++||+|++|||++|.++ .++...+.. ..|++++|
T Consensus 239 ~~~lGv~~~~~~~~~a~~~gl~~~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l 316 (345)
T 3stj_A 239 RGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKL 316 (345)
T ss_dssp CEECCEEEEECCHHHHHHTTCSCCSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEE
T ss_pred ccccceeeEeecHHHHHhcCCCCCceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEE
Confidence 45577777653210 011258999999999999999999999999999999987 778777765 68999999
Q ss_pred EEEcCCCCCeeEEEe
Q 012890 251 EVKHGNCGPIESIQV 265 (454)
Q Consensus 251 ~v~r~~~~~~~~v~l 265 (454)
+|.|+++....++++
T Consensus 317 ~v~R~g~~~~~~v~l 331 (345)
T 3stj_A 317 GLLRNGKPLEVEVTL 331 (345)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred EEEECCEEEEEEEEE
Confidence 999987443334443
No 175
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.59 E-value=1.2e-07 Score=86.92 Aligned_cols=81 Identities=27% Similarity=0.371 Sum_probs=64.4
Q ss_pred CcceeeeEEEEEeeCC--CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCC-CcEEEEEE
Q 012890 177 YDMSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEV 252 (454)
Q Consensus 177 ~~~~glGi~~~~~~d~--~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~-g~~v~l~v 252 (454)
....|+||.+..-.+. .+...++|..|.++|||++|| |+.||+|++|||+++.+.+..++..+++... |+.++|++
T Consensus 15 ~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v 94 (196)
T 1p1d_A 15 DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 94 (196)
T ss_dssp BTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEE
T ss_pred CCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence 3457899998762110 012358899999999999999 9999999999999999766688888887654 88999999
Q ss_pred EcCCC
Q 012890 253 KHGNC 257 (454)
Q Consensus 253 ~r~~~ 257 (454)
.|++.
T Consensus 95 ~R~~~ 99 (196)
T 1p1d_A 95 EFDVA 99 (196)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 88764
No 176
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.58 E-value=1.5e-07 Score=86.40 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=61.3
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhc-CCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
...++|+.+..-.+.. ..++|..|.++|||+++ ||+.||+|++|||+++.+++..++..++... ++.+.|+|.|+.
T Consensus 17 ~~~~lG~~i~~~~~~~--~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~ 93 (200)
T 2qt5_A 17 EGTTLGLTVSGGIDKD--GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNV-GERVVLEVEYEL 93 (200)
T ss_dssp TTCCCCEEEECCTTSS--SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTC-CSEEEEEEEEEC
T ss_pred CCCCCCEEEecccCCC--CCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEeccC
Confidence 3568899887522211 25789999999999999 9999999999999999999877887777544 779999998754
No 177
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.53 E-value=8.3e-08 Score=97.46 Aligned_cols=73 Identities=30% Similarity=0.438 Sum_probs=63.0
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~ 256 (454)
.++|+.+.... + .+++|..|.+||||+++||++||+|++|||+++.+++.+++..++++ ..|+.++|+|.|++
T Consensus 19 ~~lG~~i~gg~--~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 19 DSVGLRLAGGN--D--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SSCCEEEEEET--T--TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CceeEEEEecC--C--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 46898886521 2 37999999999999999999999999999999999887888888876 78999999998764
No 178
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.52 E-value=8.6e-08 Score=91.89 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=63.2
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhh-cCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~-aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
...|+||.+..-.+ ....++|..|.++|||++ +||+.||+|++|||+++.+++..++..++++. |..|+|+|.|..
T Consensus 87 ~~~glGf~I~gg~d--~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~~ 163 (263)
T 1z87_A 87 DAGGLGISIKGGRE--NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYMK 163 (263)
T ss_dssp TTCCCCCEEEEETT--TTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECCS
T ss_pred CCCCEeEEEeeccC--CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeCc
Confidence 34689999875222 224799999999999999 79999999999999999999888888888765 677999998864
No 179
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.50 E-value=4.4e-08 Score=81.49 Aligned_cols=74 Identities=30% Similarity=0.447 Sum_probs=59.3
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 179 ~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
..|+|+.+....+ ...++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .+..+.|+|.|++
T Consensus 25 ~~glG~~l~~~~~---~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 99 (113)
T 1um7_A 25 STGLGFNIVGGED---GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-AGQSVTIVAQYRP 99 (113)
T ss_dssp SSCSSBCCBCCST---TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS-CCSEEEEEEECCH
T ss_pred CCcccEEEEeccC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEECc
Confidence 4578888765221 1358899999999999999 99999999999999999877777666664 5778999988754
No 180
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=5.2e-08 Score=78.86 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=56.8
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+.. . ..++|..|.++|||+ +||++||+|++|||+++.+....++..+++. .++.+.|+|.|++
T Consensus 21 ~~~G~~l~~---~---~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 21 QDYGFHISE---S---LPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp CSCSBCCCS---S---SSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CcccEEEec---C---CCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 467776643 1 257899999999996 9999999999999999998877777777765 5889999998875
No 181
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.48 E-value=3e-07 Score=78.23 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=53.1
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCCCCCeeEEEee
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQVQ 266 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~~~~~~~v~l~ 266 (454)
+++|..|.++|||+++ |++||+|++|||+++.++ .++...+.. ..|+.++++| |++. .++++.
T Consensus 26 gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~---~~v~l~ 89 (125)
T 2hga_A 26 GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT---FHLKTG 89 (125)
T ss_dssp CEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE---EEEECC
T ss_pred ceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE---EEEEEe
Confidence 5889999999999999 999999999999999988 778777774 6789999999 8763 444443
No 182
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.44 E-value=3.9e-07 Score=83.84 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=58.9
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+.. .. .+++|..|.++|||+++| |++||+|++|||+++.+++.+++..+++.. +..+.|+|.|..
T Consensus 125 ~~lG~~~~~---~~--~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~L~V~R~~ 196 (206)
T 3r0h_A 125 KELGLSLSP---NE--IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRPK 196 (206)
T ss_dssp CCCCEEEEE---CS--SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEEEC
T ss_pred CccCeEEEc---CC--ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 468888774 11 258999999999999999 999999999999999998877787777654 568999998754
No 183
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.43 E-value=3.8e-08 Score=91.77 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=61.1
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEE-EEEEEcCC
Q 012890 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFV-TIEVKHGN 256 (454)
Q Consensus 178 ~~~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v-~l~v~r~~ 256 (454)
...|+||.+... .+..+++|..|.++|||+++||+.||+|++|||++|.+++..++..++.+. |+.+ .++|.|++
T Consensus 18 ~~~glG~~l~~~---~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g 93 (216)
T 2krg_A 18 GPSGYGFNLHSD---KSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRET 93 (216)
T ss_dssp CSSSSCEEECCC---SSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHH
T ss_pred CCCCceEEEEec---CCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECC
Confidence 346899998752 221258899999999999999999999999999999966558888877665 7788 88888765
Q ss_pred C
Q 012890 257 C 257 (454)
Q Consensus 257 ~ 257 (454)
.
T Consensus 94 ~ 94 (216)
T 2krg_A 94 D 94 (216)
T ss_dssp H
T ss_pred E
Confidence 3
No 184
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.43 E-value=2.9e-07 Score=85.37 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=63.4
Q ss_pred eeeeEEEEEeeCCCC-ceEEEEEEEcCCChhhhcCCCC-CCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 180 SGIGINLREVPDANG-VVTLKVLGLILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 180 ~glGi~~~~~~d~~g-~~~~~V~~V~~~spA~~aGL~~-GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
..+|+.+..++.... ..+++|..|.++|||++|||++ ||+|++|||+ +.++ +++...++...|+.+.|+|.|++.
T Consensus 95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~~ 171 (209)
T 3rle_A 95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTDT 171 (209)
T ss_dssp SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETTT
T ss_pred CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECCc
Confidence 357777765433211 1358999999999999999999 9999999998 8877 666677766678999999988654
Q ss_pred CCeeEEEee
Q 012890 258 GPIESIQVQ 266 (454)
Q Consensus 258 ~~~~~v~l~ 266 (454)
....+++++
T Consensus 172 ~~~~~v~l~ 180 (209)
T 3rle_A 172 DNCREVIIT 180 (209)
T ss_dssp TEEEEEEEC
T ss_pred eEEEEEEEE
Confidence 444555554
No 185
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.42 E-value=6.9e-07 Score=81.12 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=60.8
Q ss_pred eeeeEEEEEeeCCC---CceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012890 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (454)
Q Consensus 180 ~glGi~~~~~~d~~---g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~ 255 (454)
.++|+.+....+.. ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+|.|+
T Consensus 111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 189 (196)
T 3gsl_A 111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKP 189 (196)
T ss_dssp TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEE
T ss_pred CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCC
Confidence 36788876422110 11258999999999999999 99999999999999999766888888865 478899999887
Q ss_pred CC
Q 012890 256 NC 257 (454)
Q Consensus 256 ~~ 257 (454)
+.
T Consensus 190 ~~ 191 (196)
T 3gsl_A 190 SN 191 (196)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 186
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.41 E-value=5.1e-07 Score=93.38 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=61.6
Q ss_pred cceeeeEEEEEeeCC-------CCc-eEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEE
Q 012890 178 DMSGIGINLREVPDA-------NGV-VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFV 248 (454)
Q Consensus 178 ~~~glGi~~~~~~d~-------~g~-~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v 248 (454)
..+.+|+.++.+..+ ... .+++|..|.++|||++|||+.||+|++|||+++.++ .++...+.. ..|+++
T Consensus 256 ~r~~lGv~~~~~~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v 333 (451)
T 3pv2_A 256 HRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTV 333 (451)
T ss_dssp CCCBCCEEEEECCHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEE
T ss_pred ccccccceEEeccHHHHHhcCCCcCCceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEE
Confidence 345678887764210 001 268999999999999999999999999999999988 677666654 678999
Q ss_pred EEEEEcCCC
Q 012890 249 TIEVKHGNC 257 (454)
Q Consensus 249 ~l~v~r~~~ 257 (454)
+++|.|+++
T Consensus 334 ~l~V~R~g~ 342 (451)
T 3pv2_A 334 KIIVERDNK 342 (451)
T ss_dssp EEEEEETTE
T ss_pred EEEEEECCE
Confidence 999999763
No 187
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.40 E-value=3.5e-07 Score=91.46 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=63.7
Q ss_pred ceeeeEEEEEeeC--CCCceEEEEEEEcCCChhhhcCCCC-----------CCEEEeeCCEEccCCCHHHHHHhhCC-CC
Q 012890 179 MSGIGINLREVPD--ANGVVTLKVLGLILDGPAHSAGVRQ-----------GDEVLAVNGVDVRGKSAFEVSSLLQG-PS 244 (454)
Q Consensus 179 ~~glGi~~~~~~d--~~g~~~~~V~~V~~~spA~~aGL~~-----------GD~Il~InG~~v~~~~~~~~~~~l~g-~~ 244 (454)
.+.+|+.+..... .-+..+++|..|.++|||++|||+. ||+|++|||+++.++ .++...+.. ..
T Consensus 232 ~~~lGi~~~~~~~~~~~~~~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~ 309 (348)
T 3qo6_A 232 RPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKV 309 (348)
T ss_dssp CEECCCEECCTTTTTTTTCSSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCT
T ss_pred eeecCcEEccchhhhhcCCceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCC
Confidence 4556766643110 0011368999999999999999999 999999999999998 788888854 67
Q ss_pred CcEEEEEEEcCCCCCeeEEEe
Q 012890 245 ETFVTIEVKHGNCGPIESIQV 265 (454)
Q Consensus 245 g~~v~l~v~r~~~~~~~~v~l 265 (454)
|++++|+|.|+++....++++
T Consensus 310 g~~v~l~v~R~g~~~~~~v~l 330 (348)
T 3qo6_A 310 GDEVTVEVLRGDHKEKISVTL 330 (348)
T ss_dssp TCEEEEEEECSSSEEEEEEEC
T ss_pred cCEEEEEEEECCEEEEEEEEE
Confidence 999999999987543334443
No 188
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.37 E-value=4e-07 Score=83.33 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=60.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+....+.....+++|..|.++|||+++| |++||+|++|||+++.+++..++.++++.. ++.+.|+|.|++
T Consensus 119 ~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 119 VELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 4578877653211111358999999999999999 999999999999999986668888888766 889999998865
No 189
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.36 E-value=4.7e-07 Score=93.50 Aligned_cols=73 Identities=30% Similarity=0.441 Sum_probs=62.0
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~ 256 (454)
.++|+.+..- .+ .+++|..|.+||||+++||++||+|++|||+++.+++..++..+|++ +.|+.++|+|.|++
T Consensus 11 ~~lG~~i~gg--~~--~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 11 DSVGLRLAGG--ND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp SSCCEEEEEE--TT--TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CccceEEEcc--Cc--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 5688887542 12 37999999999999999999999999999999999887888888876 57899999998854
No 190
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.34 E-value=1.3e-06 Score=80.05 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=61.4
Q ss_pred eeeeEEEEEeeCC--CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~--~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+....+. .....++|..|.++|||+++| |++||+|++|||+++.+++..++.++++. .++.+.|+|.|++
T Consensus 117 ~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 117 NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDV 195 (200)
T ss_dssp TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 4577776542111 112478999999999999999 99999999999999997777889888887 7899999998864
No 191
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.32 E-value=6.1e-07 Score=88.85 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=51.3
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
+++|..|.++|||+++||++||+|++|||+++.++ .++.+.++. ++.+.|+|.|++.
T Consensus 257 gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~--~~~v~l~v~R~g~ 313 (325)
T 1lcy_A 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRE 313 (325)
T ss_dssp CEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT--CSSEEEEEEETTE
T ss_pred CeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC--CCeEEEEEEECCE
Confidence 68999999999999999999999999999999987 788888865 5899999999763
No 192
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.27 E-value=1.4e-06 Score=95.24 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=67.5
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 179 ~~glGi~~~~~~d~---~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
..|+||.+.--.+. .+..+++|..|.++|||+++| |+.||+|++|||+++.+++..++..++++ .|+.|.|+|.|
T Consensus 69 ~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R 147 (721)
T 2xkx_A 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR 147 (721)
T ss_pred CCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEe
Confidence 36899988741111 012368999999999999999 99999999999999999988888877765 47899999988
Q ss_pred CCCC--CeeEEEeee
Q 012890 255 GNCG--PIESIQVQR 267 (454)
Q Consensus 255 ~~~~--~~~~v~l~r 267 (454)
++.. ...++++.+
T Consensus 148 ~~~~~~~~~~v~l~k 162 (721)
T 2xkx_A 148 RKPPAEKVMEIKLIK 162 (721)
T ss_pred cccccccceeeeeee
Confidence 7532 234566654
No 193
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.24 E-value=1.5e-06 Score=89.56 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=52.4
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCCCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCG 258 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~~~ 258 (454)
+++|..|.++|||+++||+.||+|++|||+++.++ .++...+.. ..|++++|+|.|+++.
T Consensus 264 G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (436)
T 4a8c_A 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP 324 (436)
T ss_pred ceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 68999999999999999999999999999999988 667666653 5789999999997643
No 194
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.08 E-value=4.4e-07 Score=90.10 Aligned_cols=58 Identities=26% Similarity=0.504 Sum_probs=0.0
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~ 258 (454)
+++|..|.++|||++|||++||+|++|||+++.++ .++...++. |+.++|+|.|+++.
T Consensus 255 g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~~ 312 (332)
T 3num_A 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIKR--ESTLNMVVRRGNED 312 (332)
T ss_dssp --------------------------------------------------------------
T ss_pred ceEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCEE
Confidence 58899999999999999999999999999999887 667666653 78899999997654
No 195
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.05 E-value=5.5e-06 Score=85.64 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=52.4
Q ss_pred eEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 196 ~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.++. .++.+.|+|.|++
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~-~~~~v~l~v~R~g 443 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQE-KKKELLVQVLRGP 443 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTS-SCSCEEEEEEETT
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhc-CCCeEEEEEEECC
Confidence 368999999999999999999999999999999987 788888876 6788999999876
No 196
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.00 E-value=8e-06 Score=84.05 Aligned_cols=57 Identities=23% Similarity=0.439 Sum_probs=51.0
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
+++|..|.++|||+++||++||+|++|||+++.++ +++.++++... ..+.|+|.|++
T Consensus 364 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g 420 (436)
T 4a8c_A 364 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGN 420 (436)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCC-CeEEEEEEECC
Confidence 58899999999999999999999999999999988 78888887744 48999999976
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.96 E-value=2e-06 Score=88.80 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=52.8
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCC-CCCcEEEEEEEcCCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNC 257 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g-~~g~~v~l~v~r~~~ 257 (454)
+++|..|.++|||++|||+.||+|++|||+++.++ .++...+.. ..|++++|+|.|++.
T Consensus 287 G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 346 (448)
T 1ky9_A 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK 346 (448)
T ss_dssp SEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred ceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 58899999999999999999999999999999998 778777765 578999999999763
No 198
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.91 E-value=1.5e-05 Score=83.59 Aligned_cols=87 Identities=11% Similarity=0.176 Sum_probs=61.5
Q ss_pred ceeeeEEEEEeeCC--------CCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCH--------HHHHHhh-C
Q 012890 179 MSGIGINLREVPDA--------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSA--------FEVSSLL-Q 241 (454)
Q Consensus 179 ~~glGi~~~~~~d~--------~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~--------~~~~~~l-~ 241 (454)
++.+|+.++.+.+. +...+++|..|.++|||+++ |++||+|++|||++|..... ..+..++ .
T Consensus 252 r~~LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~ 330 (539)
T 4fln_A 252 YPCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ 330 (539)
T ss_dssp CCBCCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred eeecceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence 45678887764210 11236999999999999886 99999999999999975421 1122333 3
Q ss_pred CCCCcEEEEEEEcCCCCCeeEEEee
Q 012890 242 GPSETFVTIEVKHGNCGPIESIQVQ 266 (454)
Q Consensus 242 g~~g~~v~l~v~r~~~~~~~~v~l~ 266 (454)
...|++++|+|.|+++....++++.
T Consensus 331 ~~~Gd~v~l~v~R~Gk~~~v~Vtl~ 355 (539)
T 4fln_A 331 KFAGDIAEIGIIRAGEHKKVQVVLR 355 (539)
T ss_dssp SCTTCEEEEEEEETTEEEEEEEECB
T ss_pred CCCCCEEEEEEEECCEEEEEEEEEc
Confidence 4789999999999876555555553
No 199
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.84 E-value=2.7e-05 Score=85.14 Aligned_cols=73 Identities=32% Similarity=0.467 Sum_probs=59.8
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcC-CCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~ 256 (454)
.++|+.+....+ ..+++|..|.++|||+++| |++||+|++|||+++.+.+.+++..+|+.. +..+.|.|.|+.
T Consensus 318 ~~lG~~i~~~~~---~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~-~~~v~L~v~r~~ 391 (721)
T 2xkx_A 318 TGLGFNIVGGED---GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKP 391 (721)
T ss_pred CCccEEEeccCC---CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence 468888764211 1368999999999999999 999999999999999998778888888764 678999987754
No 200
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.56 E-value=1.1e-05 Score=83.38 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=0.0
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~ 257 (454)
+++|..|.++|||+++||++||+|++|||+++.++ .++.++++...+ .+.|+|.|++.
T Consensus 384 gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~-~v~l~v~R~g~ 441 (448)
T 1ky9_A 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPS-VLALNIQRGDS 441 (448)
T ss_dssp -------------------------------------------------------------
T ss_pred eEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCC-eEEEEEEECCE
Confidence 58899999999999999999999999999999977 677777776555 88888988763
No 201
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.34 E-value=2.9e-05 Score=78.64 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012890 199 KVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (454)
Q Consensus 199 ~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r 254 (454)
+|..|.++|||+++||++||+|++|||+++.+.+.+++..+++. .+..+.|+|.+
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p 372 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMP 372 (388)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEe
Confidence 68899999999999999999999999999987766777777765 45677777754
No 202
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.31 E-value=0.00032 Score=62.04 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=45.9
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEE
Q 012890 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (454)
Q Consensus 180 ~glGi~~~~~~d~~g~~~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v 252 (454)
..+|+.+.. . +|..|.++|||+++||++||+|++|||+++.++....+...+. ..|..+.+++
T Consensus 100 ~~lG~~~~~--------g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~-r~g~~~~l~v 162 (166)
T 1w9e_A 100 GHVGFIFKN--------G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITI 162 (166)
T ss_dssp SCCSEEEET--------T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEE
T ss_pred CcEeEEEeC--------C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHh-hCCCEEEEEE
Confidence 456776652 2 6889999999999999999999999999999986555443332 1244444444
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0031 Score=66.17 Aligned_cols=65 Identities=12% Similarity=0.234 Sum_probs=55.4
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEeeee
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQRQ 268 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~~~~~~l~g~~g~~v~l~v~r~~~~~~~~v~l~r~ 268 (454)
.++|+.|.++++|..+|+++||+|++|||++|.+. .++.+++....+..+.+++..+ +.+.|.++
T Consensus 416 gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~~~-----~~ivL~~~ 480 (539)
T 4fln_A 416 IVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFEDN-----YVAVLERE 480 (539)
T ss_dssp CEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEETTS-----CEEEEEHH
T ss_pred EEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEECCC-----EEEEEEHH
Confidence 58999999999999999999999999999999988 8899999888888888877542 23566554
No 204
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=89.97 E-value=0.94 Score=41.94 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=63.4
Q ss_pred CCeeEEEEech-hhhhHHHHHHHHHHHHHhcCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEe
Q 012890 286 TTSVGYMRLKE-FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIV 364 (454)
Q Consensus 286 ~~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~ 364 (454)
.++|..|.+.. ++....+.+.++|+++.+.+++.+||.+ +.+||++..+..+...+..
T Consensus 7 ~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~i-nspGG~v~~~~~i~~~i~~-------------------- 65 (230)
T 3viv_A 7 KNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIEL-DTPGGRADAMMNIVQRIQQ-------------------- 65 (230)
T ss_dssp CCEEEEEEEESCBCHHHHHHHHHHHHHHHHTTCSEEEEEE-EBSCEEHHHHHHHHHHHHT--------------------
T ss_pred CCeEEEEEEeCEECHHHHHHHHHHHHHHhcCCCCEEEEEE-eCCCcCHHHHHHHHHHHHh--------------------
Confidence 46777788765 4445667888888888777899999976 4789999888777665431
Q ss_pred cCCCCCCCCCEEEEE---CCCCCChHHHHHHHHh
Q 012890 365 ADNSPLVTAPVIVLV---NNRTASASEIVASALH 395 (454)
Q Consensus 365 ~~~~~~~~~~v~VLv---~~~TaSaaE~~a~~lk 395 (454)
.++|++..+ ++..+|++-.++.+-.
T Consensus 66 ------~~~PVia~v~p~~G~AasaG~~ia~a~d 93 (230)
T 3viv_A 66 ------SKIPVIIYVYPPGASAASAGTYIALGSH 93 (230)
T ss_dssp ------CSSCEEEEECSTTCEEETHHHHHHHTSS
T ss_pred ------CCCCEEEEEecCCCEEhHHHHHHHHhcC
Confidence 247899999 9999999988887654
No 205
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=82.94 E-value=1.3 Score=40.47 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=59.6
Q ss_pred CeeEEEEechhhhhHHHHHHHHHHHHHhc-CCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEec
Q 012890 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (454)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (454)
++|.+|.- ..+....+.+.+.|..+.+. +.+.++|.+ +-+||.+..+..+.+.+..
T Consensus 45 ~rii~l~g-~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-nSPGG~v~ag~~I~~~i~~--------------------- 101 (218)
T 1y7o_A 45 DRIIMLTG-PVEDNMANSVIAQLLFLDAQDSTKDIYLYV-NTPGGSVSAGLAIVDTMNF--------------------- 101 (218)
T ss_dssp TTEEEEES-CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEeC-EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHh---------------------
Confidence 45555542 23344567788888877654 578999998 7789999988887765521
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHhc
Q 012890 366 DNSPLVTAPVIVLVNNRTASASEIVASALHD 396 (454)
Q Consensus 366 ~~~~~~~~~v~VLv~~~TaSaaE~~a~~lk~ 396 (454)
.++||++.+++.++|++-.++.+-..
T Consensus 102 -----~~~pV~t~v~G~AaS~G~~Ia~a~d~ 127 (218)
T 1y7o_A 102 -----IKADVQTIVMGMAASMGTVIASSGAK 127 (218)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHTTSCT
T ss_pred -----cCCCEEEEEccEeHHHHHHHHHcCCc
Confidence 23689999999999999988877643
No 206
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=78.14 E-value=2.3 Score=38.53 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHh-cCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEecCCCCCCCCCEEEE
Q 012890 300 LARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVL 378 (454)
Q Consensus 300 ~~~~~l~~~l~~l~~-~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~VL 378 (454)
...+.+.+.|..+.. .+.++++|.+ +-+||.+..+..+.+.+.. .++||++.
T Consensus 39 ~~a~~i~~~L~~~~~~~~~k~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------------~~~pV~~~ 91 (208)
T 2cby_A 39 EIANRLCAQILLLAAEDASKDISLYI-NSPGGSISAGMAIYDTMVL--------------------------APCDIATY 91 (208)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------CSSCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEEE
Confidence 456678888877764 3588888888 7789999888888877642 13689999
Q ss_pred ECCCCCChHHHHHHHHhc
Q 012890 379 VNNRTASASEIVASALHD 396 (454)
Q Consensus 379 v~~~TaSaaE~~a~~lk~ 396 (454)
+++.++|+|-+++++-..
T Consensus 92 v~g~AaS~g~~Ia~agd~ 109 (208)
T 2cby_A 92 AMGMAASMGEFLLAAGTK 109 (208)
T ss_dssp EEEEEETHHHHHHHTSCT
T ss_pred ECcEeHHHHHHHHhCCCc
Confidence 999999999999887643
No 207
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=77.53 E-value=2.5 Score=37.74 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=58.9
Q ss_pred CeeEEEEechhhhhHHHHHHHHHHHHHh-cCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEec
Q 012890 287 TSVGYMRLKEFNALARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (454)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (454)
.+|.+|.=. ......+.+.+.|..+.. .+.+.++|.+ +-+||++..+..+.+.+..
T Consensus 26 ~rii~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------- 82 (193)
T 1yg6_A 26 ERVIFLTGQ-VEDHMANLIVAQMLFLEAENPEKDIYLYI-NSPGGVITAGMSIYDTMQF--------------------- 82 (193)
T ss_dssp TTEEEEESS-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcCE-EcHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHh---------------------
Confidence 455555322 233456677777877754 3578888888 7789999999888877642
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHhc
Q 012890 366 DNSPLVTAPVIVLVNNRTASASEIVASALHD 396 (454)
Q Consensus 366 ~~~~~~~~~v~VLv~~~TaSaaE~~a~~lk~ 396 (454)
.+.||++.+++.++|+|-+++.+-..
T Consensus 83 -----~~~pV~~~v~g~AaS~g~~Ia~ag~~ 108 (193)
T 1yg6_A 83 -----IKPDVSTICMGQAASMGAFLLTAGAK 108 (193)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSCT
T ss_pred -----cCCCEEEEEeeeHHHHHHHHHHCCCc
Confidence 12589999999999999999887543
No 208
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=73.76 E-value=3.4 Score=37.69 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHhcCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEecCCCCCCCCCEEEEE
Q 012890 300 LARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVLV 379 (454)
Q Consensus 300 ~~~~~l~~~l~~l~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~VLv 379 (454)
...+.+...|..+...+.+.++|.+ +-+||.+.++..|.+.+..- +.|+++.+
T Consensus 51 ~~a~~i~~~L~~l~~~~~k~I~l~I-NSPGGsv~a~~~I~~~i~~~--------------------------~~pV~t~v 103 (215)
T 2f6i_A 51 KTADELISQLLYLDNINHNDIKIYI-NSPGGSINEGLAILDIFNYI--------------------------KSDIQTIS 103 (215)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEEEE-EECCBCHHHHHHHHHHHHHS--------------------------SSCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEE-ECCCCCHHHHHHHHHHHHhc--------------------------CCCEEEEE
Confidence 3456777778777655558888887 77899999998888876421 24788888
Q ss_pred CCCCCChHHHHHHHHhc
Q 012890 380 NNRTASASEIVASALHD 396 (454)
Q Consensus 380 ~~~TaSaaE~~a~~lk~ 396 (454)
.+..+|+|-+++++-..
T Consensus 104 ~g~AAS~g~~Ia~agd~ 120 (215)
T 2f6i_A 104 FGLVASMASVILASGKK 120 (215)
T ss_dssp EEEECHHHHHHHHTSCT
T ss_pred eeEhHhHHHHHHHcCCc
Confidence 89999999988887644
No 209
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=67.69 E-value=6 Score=35.71 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=56.4
Q ss_pred CeeEEEEechhhhhHHHHHHHHHHHHHhc-CCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEec
Q 012890 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (454)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (454)
++|-||.=+ .+....+.+...|..+... ..+.++|.+ +-+||++..+..+.+.+..
T Consensus 27 ~riI~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~~~~~I~~~i~~--------------------- 83 (203)
T 3qwd_A 27 DRIIMLGSQ-IDDNVANSIVSQLLFLQAQDSEKDIYLYI-NSPGGSVTAGFAIYDTIQH--------------------- 83 (203)
T ss_dssp TTEEEECSC-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHH---------------------
Confidence 455555322 2334566777777777654 478888877 6789999988888876532
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHh
Q 012890 366 DNSPLVTAPVIVLVNNRTASASEIVASALH 395 (454)
Q Consensus 366 ~~~~~~~~~v~VLv~~~TaSaaE~~a~~lk 395 (454)
.++||++.+.+.++|+|-+++.+-.
T Consensus 84 -----~~~~V~t~~~G~AaSag~~i~~ag~ 108 (203)
T 3qwd_A 84 -----IKPDVQTICIGMAASMGSFLLAAGA 108 (203)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSC
T ss_pred -----hcCCcEEEEeeeehhHHHHHHHcCC
Confidence 1357888899999999988887654
No 210
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=63.78 E-value=7.9 Score=34.83 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=56.9
Q ss_pred CeeEEEEechhhhhHHHHHHHHHHHHHhc-CCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEec
Q 012890 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (454)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (454)
++|-||.=+ .+....+.+...|..+... ..+.++|-+ +-+||++..+..+.+.+..
T Consensus 30 ~riI~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~--------------------- 86 (201)
T 3p2l_A 30 ERIVFLNGE-VNDHSANLVIAQLLFLESEDPDKDIYFYI-NSPGGMVTAGMGVYDTMQF--------------------- 86 (201)
T ss_dssp TTEEEEESC-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHH---------------------
Confidence 455565432 2334566777777777643 478888887 7789999998888876632
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHh
Q 012890 366 DNSPLVTAPVIVLVNNRTASASEIVASALH 395 (454)
Q Consensus 366 ~~~~~~~~~v~VLv~~~TaSaaE~~a~~lk 395 (454)
.+.|+++.+.+.++|+|-+++.+-.
T Consensus 87 -----~~~~v~t~~~G~AaS~g~~i~~ag~ 111 (201)
T 3p2l_A 87 -----IKPDVSTICIGLAASMGSLLLAGGA 111 (201)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSS
T ss_pred -----hCCCeEEEEcCEehhHHHHHHHcCc
Confidence 1257888888999999988887644
No 211
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=62.69 E-value=8.2 Score=36.85 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCchhhHHHHHHHhhc---cccChHHHHHHHHHHHHhc-CCCCcee
Q 012890 102 EGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSS---SIQTRSKAHGIIKRMLASL-GDPYTRF 165 (454)
Q Consensus 102 ~~~~~~~w~~v~~~y~d~~~~~~~~~dW~~~~e~~~~~---~~~~~~~~~~~i~~ml~~L-~D~Ht~~ 165 (454)
..+++.+|..++++|.++.. =.++.+++... .+.+.+++...+.+++..+ +|+|..+
T Consensus 5 ~~vv~~~~~~l~~~Y~f~~~-------~~a~~~~l~~~~~~~i~~~~~La~~Lt~~lq~~~~D~hl~v 65 (302)
T 1j7x_A 5 THVLHQLCDILANNYAFSER-------IPTLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVL 65 (302)
T ss_dssp HHHHHHHHHHHHHHCSCGGG-------HHHHHHHGGGSCCSSCCSHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHHHHHhCCCHHH-------HHHHHHHHhcCCcccCCCHHHHHHHHHhhhhhccCCCcEEE
Confidence 45899999999999998651 12455553222 3578889999999999995 9999865
No 212
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=54.05 E-value=22 Score=29.32 Aligned_cols=49 Identities=6% Similarity=0.107 Sum_probs=37.8
Q ss_pred CCeeEEEEech---hhhhHHHHHHHHHHHHHhcCCceeEEccCCCCCcchHHH
Q 012890 286 TTSVGYMRLKE---FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAG 335 (454)
Q Consensus 286 ~~~igYi~i~s---F~~~~~~~l~~~l~~l~~~~~~~LIiDLR~N~GG~~~~~ 335 (454)
+++|.|+++.. ++....+.+...+.++...+.-.+++|+|.. +.....+
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~-~~~s~~A 69 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATT-ADVSRGA 69 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSS-THHHHHH
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccc-cCCCHHH
Confidence 58999999987 5666677777778888887788999999998 4444433
No 213
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=53.62 E-value=14 Score=34.96 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHh-cCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEecCCCCCCCCCEEEE
Q 012890 300 LARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVL 378 (454)
Q Consensus 300 ~~~~~l~~~l~~l~~-~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~VL 378 (454)
...+.+...|..+.. .+.+.++|.+ +-+||++..+..|.+.+.. .+.||++.
T Consensus 94 ~~a~~iiaqL~~l~~ed~~k~I~L~I-NSPGGsV~ag~aIyd~I~~--------------------------~k~pV~t~ 146 (277)
T 1tg6_A 94 SVASLVIAQLLFLQSESNKKPIHMYI-NSPGGVVTAGLAIYDTMQY--------------------------ILNPICTW 146 (277)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------SCSCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEEE
Confidence 345667777776643 3578888887 7789999999888877542 12478888
Q ss_pred ECCCCCChHHHHHHHHh
Q 012890 379 VNNRTASASEIVASALH 395 (454)
Q Consensus 379 v~~~TaSaaE~~a~~lk 395 (454)
+.+..+|++-+++.+-.
T Consensus 147 v~G~AASaG~~Ia~Agd 163 (277)
T 1tg6_A 147 CVGQAASMGSLLLAAGT 163 (277)
T ss_dssp EEEEEETHHHHHHHTSC
T ss_pred EccEeHHHHHHHHHCCC
Confidence 88888888888877654
No 214
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=35.56 E-value=30 Score=31.63 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHh-cCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCcccceEEecCCCCCCCCCEEEEEC
Q 012890 302 RKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVLVN 380 (454)
Q Consensus 302 ~~~l~~~l~~l~~-~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~v~VLv~ 380 (454)
.+++.++++++.+ ..++++||..-. +||++..+..+...+..- + . ...+||+..++
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l~~~---------~---------~----~~~kPVia~v~ 87 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVNS-PGGGVYESAEIHKKLEEI---------K---------K----ETKKPIYVSMG 87 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEE-CCBCHHHHHHHHHHHHHH---------H---------H----HHCCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEecC-CCCCHHHHHHHHHHHHHH---------H---------H----hCCCeEEEEEC
Confidence 4678888888764 468999998764 688877665554433210 0 0 02479999999
Q ss_pred CCCCChHHHHHHH
Q 012890 381 NRTASASEIVASA 393 (454)
Q Consensus 381 ~~TaSaaE~~a~~ 393 (454)
+.++|++=.+|.+
T Consensus 88 g~a~~gG~~lA~a 100 (240)
T 3rst_A 88 SMAASGGYYISTA 100 (240)
T ss_dssp EEEETHHHHHHTT
T ss_pred CeehHhHHHHHHh
Confidence 9999998666554
No 215
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=30.35 E-value=16 Score=26.33 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhccCccccccC
Q 012890 46 VLTGALSFNLLLSSPLALESS 66 (454)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~ 66 (454)
++++++++++.+|.|..+++|
T Consensus 10 ~aLi~~Sf~LVVgVPV~~Asp 30 (62)
T 3arc_Z 10 AALVILSFVMVIGVPVAYASP 30 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHheeeeEEECC
Confidence 455678999999999999987
No 216
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=26.51 E-value=90 Score=28.28 Aligned_cols=50 Identities=36% Similarity=0.517 Sum_probs=34.0
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEeeCCEEccCCCH---HHHHHhhCCCCCcEEEEEE
Q 012890 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSA---FEVSSLLQGPSETFVTIEV 252 (454)
Q Consensus 197 ~~~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~---~~~~~~l~g~~g~~v~l~v 252 (454)
++.|.. +++.|++.|..++++||.++.+-.. .++...+.|+.+..+.+..
T Consensus 46 ~~~v~~------~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~ 98 (219)
T 2j3t_D 46 RVLVAF------GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRF 98 (219)
T ss_dssp SEEEEE------CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEE
T ss_pred eeEEee------cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEe
Confidence 566653 4567899999999999999987521 2456666666555554443
No 217
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=26.10 E-value=74 Score=25.52 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=38.7
Q ss_pred CeeEEEEech-hhhhHHHHHHHHHHHHHhc---CCceeEEccCCCCCcch---HHHHHHHHhcccCCceEEE
Q 012890 287 TSVGYMRLKE-FNALARKDLVTAMKRLQDM---GASYFILDLRDNLGGLV---QAGIEIAKLFLNEGETITY 351 (454)
Q Consensus 287 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~---~~~~LIiDLR~N~GG~~---~~~~~l~~~f~~~~~~~~~ 351 (454)
+++..+++.. +.-...+.|.+.+.++... +.+.+|||+++-.-=+. .....+...+-..+..+..
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 85 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAM 85 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEE
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4677777764 2334567788888776544 57899999987653332 2223344455555544443
No 218
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=25.01 E-value=18 Score=38.03 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCeeEEEEechh--------hhhHHHHHHHHHHHHHhc-CCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCC
Q 012890 286 TTSVGYMRLKEF--------NALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRD 356 (454)
Q Consensus 286 ~~~igYi~i~sF--------~~~~~~~l~~~l~~l~~~-~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~ 356 (454)
.++|+.|.+..= +....+++.++|+++.+. +++++||..-. +||++..+..+...+..
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-pGG~~~~~~~i~~~i~~------------ 366 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-PGGSVTASEVIRAELAA------------ 366 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-EEECHHHHHHHHHHHHH------------
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-CCCCHHHHHHHHHHHHH------------
Confidence 467888887642 112357788888887654 68888887643 68888765444332210
Q ss_pred cccceEEecCCCCCCCCCEEEEECCCCCChHHHHHHHH
Q 012890 357 PQYQKTIVADNSPLVTAPVIVLVNNRTASASEIVASAL 394 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~v~VLv~~~TaSaaE~~a~~l 394 (454)
+. ...+||++.+++.++|++=.++.+.
T Consensus 367 ------l~-----~~~kPVia~v~g~AasgG~~iA~aa 393 (593)
T 3bf0_A 367 ------AR-----AAGKPVVVSMGGMAASGGYWISTPA 393 (593)
T ss_dssp ------HH-----HTTCCEEEEEEEEEETHHHHTTTTC
T ss_pred ------HH-----hCCCCEEEEECCChHHHHHHHHHhC
Confidence 00 0247999999999999987766554
No 219
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=23.57 E-value=83 Score=24.23 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=29.6
Q ss_pred CeeEEEEech-hhhhHHHHHHHHHHHHHhcC-CceeEEccCCCCCcchHH
Q 012890 287 TSVGYMRLKE-FNALARKDLVTAMKRLQDMG-ASYFILDLRDNLGGLVQA 334 (454)
Q Consensus 287 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~-~~~LIiDLR~N~GG~~~~ 334 (454)
+++..+++.. +.......+.+.+.++...+ .+.+|||+++=.-=+...
T Consensus 11 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDssg 60 (116)
T 1th8_B 11 QDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSG 60 (116)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHHH
T ss_pred CCEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccHH
Confidence 3455666543 23334566777777665544 788999998766555443
No 220
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=21.45 E-value=1.5e+02 Score=27.50 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=54.1
Q ss_pred CeeEEEEech------hhhhHHHHHHHHHHHHHh-cCCceeEEccCCCCCcchHHHHHHHHhcccCCceEEEEecCCccc
Q 012890 287 TSVGYMRLKE------FNALARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQY 359 (454)
Q Consensus 287 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~r~~~~ 359 (454)
++|++|.++. |+....++|.+++.++.+ ..++.+|| ++++ +.+..+.++-.+ ......-.+...+ ..
T Consensus 28 ~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g-~~F~aG~Dl~~~-~~~~~~~~~~~~~--~~ 101 (278)
T 4f47_A 28 GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL--TGAG-GYFCAGMDLKAA-TKKPPGDSFKDGS--YD 101 (278)
T ss_dssp TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE--EEST-TCCC-------------------------C
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCC-CcccCCcChHhh-hccchhhhHHHHH--HH
Confidence 5677777754 344566788889988865 46888888 4443 344444333221 1110000000000 00
Q ss_pred ceEEecCCCC---CCCCCEEEEECCCCCChHHHHHHHHhcCCCeEEEccc
Q 012890 360 QKTIVADNSP---LVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEK 406 (454)
Q Consensus 360 ~~~~~~~~~~---~~~~~v~VLv~~~TaSaaE~~a~~lk~~~~a~vVGe~ 406 (454)
...+ ..-. ...+|++..+++.+.+++-.++.+ +..+|..+.
T Consensus 102 ~~~~--~~l~~~~~~~kPvIAav~G~a~GgG~~lala----cD~ria~~~ 145 (278)
T 4f47_A 102 PSRI--DALLKGRRLKKPLIAAVEGPAIAGGTEILQG----TDIRVAAES 145 (278)
T ss_dssp TTCB--TTTTBSCCCSSCEEEEECSEEETHHHHHHTT----CSEEEEETT
T ss_pred HHHH--HHHHHhcCCCCCEEEEECCEEehHHHHHHHh----CCEEEEcCC
Confidence 0000 0111 357999999999999988766653 345555443
No 221
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=21.11 E-value=2.5e+02 Score=22.23 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=39.9
Q ss_pred CeeEEEEech-hhhhHHHHHHHHHHHHHhcCCceeEEccCCCCCcchHHHHHHHH---hcccCCceEEE
Q 012890 287 TSVGYMRLKE-FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAK---LFLNEGETITY 351 (454)
Q Consensus 287 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIiDLR~N~GG~~~~~~~l~~---~f~~~~~~~~~ 351 (454)
+++..+++.. +.-...+.|.+.+..+ ..+.+.+|||+++-..=+......+.. .+-..+..+..
T Consensus 19 ~~v~v~~~~G~L~f~~a~~~~~~l~~~-~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 86 (130)
T 4dgh_A 19 RELAVYALEGPFFFAAAETFERVMGSI-QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLI 86 (130)
T ss_dssp TTEEEEECCSSCCHHHHHHHHHHHHHS-SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCEEEEEEeeeEeehhHHHHHHHHHHh-ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5777888875 2334566777777765 346789999999988766554433333 23444544443
No 222
>1t0p_B ICAM-3, intercellular adhesion molecule-3, ICAM-R, CDW50, CD50 antigen; rossmann fold, IG-super family domain, immune system; HET: NAG; 1.66A {Homo sapiens}
Probab=20.24 E-value=28 Score=26.81 Aligned_cols=11 Identities=64% Similarity=1.235 Sum_probs=5.4
Q ss_pred ccceecC-CCCC
Q 012890 3 SLILNCS-SCTS 13 (454)
Q Consensus 3 ~~~~~~~-~~~~ 13 (454)
|+.+||| +|..
T Consensus 19 S~~vNCStsC~~ 30 (86)
T 1t0p_B 19 SLFVNCSTDCPS 30 (86)
T ss_dssp EEEEEEEECCTT
T ss_pred cEEEEEeCCCCC
Confidence 4555554 3543
Done!