BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012891
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 155/368 (42%), Gaps = 70/368 (19%)
Query: 58 DFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN 117
D GT ++ + +D Y +LGV IK A+ LA++YHPD +K
Sbjct: 12 DLGTENLYFQSNAMEL--------KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE 63
Query: 118 NPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYSAGDAEGFRYAGDAEGFRYA 177
N A+ KF+++ +A+E L+D ++RR+ +Y + +++ D GF
Sbjct: 64 N-DAEAKFKDLAEAWEVLKD-------EQRRA------EYD----QLWQHRNDP-GFGRQ 104
Query: 178 YQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHG 237
QTH + F +IF +S F Q AA+G + F+
Sbjct: 105 RQTHEQSYSQQDFDDIF---SSMFG---QQAHQRRRQHAARGHDLEIEVAVFL------- 151
Query: 238 RGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVK 297
+ + R I +P + G I + T +
Sbjct: 152 -------EETLAEQTRTIS-YNLPVYNV-------FGMIESETPKT------------LN 184
Query: 298 VTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQ 357
V IPAGV G IR+ G G G +G+L++ + +A P+F G ++ + ++ +
Sbjct: 185 VKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWE 244
Query: 358 AILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTA 417
A LG KV VPTL + + +P G Q GQ L ++GKGL GD + ++ PT
Sbjct: 245 AALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK---THTGDLFAVIKIVMPTK 301
Query: 418 LNERQRAI 425
+E+ R +
Sbjct: 302 PDEKAREL 309
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
D Y++LGVP NASQ EIKKA++ LAK+YHPD NK++P AK KF ++ +AYE L D KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 143 QYD 145
QYD
Sbjct: 68 QYD 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Y++LGVP++AS+ +IKKAFH LA +YHPD NK +P A+ KF+EI +AYETL D+ +R +Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 145 D 145
D
Sbjct: 69 D 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
+K+D YE+LGV + A + EI+KA+ LA +YHPD N+ + A+ KF+EI++AYE L DS+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
+K+D YE+LGV + A + EI+KA+ LA +YHPD N+ + A+ KF+EI++AYE L DS+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
+K+D YE+LGV + A + EI+KA+ LA +YHPD N+ + A+ KF+EI++AYE L DS+
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 140 KRAQYDR 146
KRA YD+
Sbjct: 61 KRAAYDQ 67
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 20/227 (8%)
Query: 204 DIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTC--RGIGRVT-- 259
DI+ E+ S E KG T ++ + + C C GRG A K C++C +GI VT
Sbjct: 13 DIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQ 71
Query: 260 ----IPPFTSTCSTCKGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVP 313
I F + C C G G II KD C +C G V + K ++V + G+ G I
Sbjct: 72 MGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK 131
Query: 314 EAGNAGGRGRQHGNLFIKLKVADDP--IFSRDGADVYVDSNISFTQAILGGKVDVPTLSG 371
+ +FI V++ P F RDG D+ ++ I AI GG+ + +SG
Sbjct: 132 GEADQAPDVIPGDVVFI---VSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188
Query: 372 ---KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415
KV + + + PG V+ GKG+ + +G+ ++F + P
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIP-KYGGYGNLIIKFTIKDP 234
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Y LLGV + AS EI++AF LA + HPD N NNP+A F +I AYE L+D + R +Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 145 DRRRSRGSENEKYSAGDAEGFRY 167
D+ +G E+ + G E + Y
Sbjct: 84 DKYGEKGLEDNQ--GGQYESWSY 104
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
DPY +LGV ASQ +IKKA+ LA+++HPD NK +P A+ +F +I AYE L + EKR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRT 76
Query: 143 QYD 145
YD
Sbjct: 77 NYD 79
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Y LLGV + AS EI++AF LA + HPD N NNP+A F +I AYE L+D + R +Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 145 DRRRSRGSENEKYSAGDAEGFRY 167
D+ +G E+ + G E + Y
Sbjct: 65 DKYGEKGLEDNQ--GGQYESWSY 85
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 76 SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETL 135
S +S Y +LG+ +NA+ D+IKK++ LA +YHPD N +NP A KF+EI +A+ L
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 136 RDSEKRAQYDRRRSRG 151
D+ KR YD+ S G
Sbjct: 71 TDATKRNIYDKYGSLG 86
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS-AKRKFQEIRDAYETLRDSEKRAQ 143
YE+L VP +AS D+IKKA+ A Q+HPD N +N A++KF+E+ +AYE L D KR
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 144 YDR 146
YDR
Sbjct: 65 YDR 67
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 66.2 bits (160), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Y++LGV NA+Q+E+KKA+ LA +YHPD NP+ KF++I AYE L D++KR Y
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPD---KNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 145 DR 146
D+
Sbjct: 66 DK 67
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQ 143
YE+LGV +AS ++IKKA+ LA ++HPD N +N A++KF+ + +AYE L DS+KR+
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 144 YDR 146
YDR
Sbjct: 72 YDR 74
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDAN-KNNPSAKRKFQEIRDAYETLRDSEKR 141
D YE+L VP AS + IKKA+ LA ++HPD N +N A+R+F+++ +AYE L D++KR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 142 AQYDR 146
YDR
Sbjct: 70 DIYDR 74
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141
+D Y+ LG+ AS +EIK+A+ A +YHPD NK P A+ KF+EI +AY+ L D KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 142 AQYDR 146
+DR
Sbjct: 62 EIFDR 66
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138
S +D Y ++GV IK A+ LA++YHPD +K P A+ +F+E+ +A+E L D
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDE 60
Query: 139 EKRAQYDR 146
++RA+YD+
Sbjct: 61 QRRAEYDQ 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSE 139
S D YE+LGV AS +++KKA+ LA ++HPD N + P A F+ I AY L + E
Sbjct: 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPE 63
Query: 140 KRAQYDR 146
KR QYD+
Sbjct: 64 KRKQYDQ 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Y++LGV +AS +E+KKA+ +A ++HPD NP +F++I AYE L D +KR Y
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD---KNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 145 DR 146
D+
Sbjct: 68 DQ 69
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 75 GSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYET 134
G C S+ Y+LLGVP A+Q +IK A++ YHPD N + A +F I AY
Sbjct: 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVV 69
Query: 135 LRDSEKRAQYDR 146
L + R +YDR
Sbjct: 70 LGSATLRRKYDR 81
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
G + + K + + + G G I P+ G+ +F+ LK IF RDG+
Sbjct: 44 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFV-LKDKPHNIFKRDGS 102
Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHG 404
DV + IS +A+ G V+VPTL G+ + V ++PG + G+GL G
Sbjct: 103 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 162
Query: 405 DQYVRFRVNFPTALNERQRAIL 426
D + F V FP + + R +L
Sbjct: 163 DLIIEFEVIFPERIPQTSRTVL 184
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
G + + K + + + G G I P+ G+ +F+ LK IF RDG+
Sbjct: 37 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFV-LKDKPHNIFKRDGS 95
Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHG 404
DV + IS +A+ G V+VPTL G+ + V ++PG + G+GL G
Sbjct: 96 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 155
Query: 405 DQYVRFRVNFPTALNERQRAIL 426
D + F V FP + + R +L
Sbjct: 156 DLIIEFEVIFPERIPQTSRTVL 177
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Query: 286 GSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGA 345
G + + K + + + G G I P+ G+ +F+ LK IF RDG+
Sbjct: 35 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFV-LKDKPHNIFKRDGS 93
Query: 346 DVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHG 404
DV + IS +A+ G V+VPTL G+ + V ++PG + G+GL G
Sbjct: 94 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRG 153
Query: 405 DQYVRFRVNFPTALNERQRAIL 426
D + F V FP + + R +L
Sbjct: 154 DLIIEFEVIFPERIPQTSRTVL 175
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 83 DPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRA 142
D Y LLG E +S ++I F + A + HPD + NP A FQ+++ A E L + E RA
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 143 QYDR-RRSRGS 152
+YD RRS+ S
Sbjct: 81 RYDHWRRSQMS 91
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Y+LLGV +A++ E+KK + A +YHPD + KF+EI +A+E L D +KR Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 145 DR 146
D+
Sbjct: 68 DQ 69
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 209 LVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--PFT-- 264
+ L+F +AAKG K + + C+ C+G+G K + C C G G TI PF
Sbjct: 8 MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMR 67
Query: 265 STCSTCKGLGRIIKDHCMTCKGSG 288
STC C G G II C+ C+G+G
Sbjct: 68 STCRRCGGRGSIIISPCVVCRGAG 91
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETL 135
S KRD Y++LGV NA + EI KA+ LA Q+HPD +N A++KF +I A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
Query: 136 RDSEKRAQYD 145
D E R ++D
Sbjct: 439 SDPEMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETL 135
S KRD Y++LGV NA + EI KA+ LA Q+HPD +N A++KF +I A E L
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
Query: 136 RDSEKRAQYD 145
D E R ++D
Sbjct: 439 SDPEXRKKFD 448
>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|B Chain B, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|C Chain C, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|D Chain D, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|E Chain E, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|F Chain F, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|G Chain G, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|H Chain H, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|I Chain I, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|J Chain J, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|K Chain K, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|L Chain L, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 109
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 338 PIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKN 397
P+F G ++ + ++ +A LG KV VPTL + + +P G Q GQ L ++GKGL
Sbjct: 5 PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK 64
Query: 398 GLFLDHGDQYVRFRVNFPTALNERQRAI 425
GD + ++ PT +E+ R +
Sbjct: 65 ---THTGDLFAVIKIVXPTKPDEKAREL 89
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 221 TKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRI 276
TK + CD CHG G + + C TC G G+V + TC C+G G +
Sbjct: 3 TKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62
Query: 277 IKDHCMTCKGSGVVD 291
IKD C C G G V+
Sbjct: 63 IKDPCNKCHGHGRVE 77
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 78 YSSKRDPYELLGVP-ENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYE 133
Y + Y++L V E + ++ KA+ LA+++HPD KN A+ +F+ I AYE
Sbjct: 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70
Query: 134 TLRDSEKRAQYD 145
TL+D E + YD
Sbjct: 71 TLKDDEAKTNYD 82
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNIS 354
++ + + G +G I G+ + + L ++ P F RDG D+ +S
Sbjct: 37 QIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96
Query: 355 FTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVN 413
F +++LG + T+ G+ + + + VQP Q G+G+ G+ V+++V+
Sbjct: 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVD 156
Query: 414 FPTALNERQ-RAI 425
+P +LN+ Q RAI
Sbjct: 157 YPISLNDAQKRAI 169
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 295 EVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNIS 354
++ + + G +G I G+ + + L ++ P F RDG D+ +S
Sbjct: 37 QIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96
Query: 355 FTQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVN 413
F +++LG + T+ G+ + + + VQP Q G+G+ G+ V+++V+
Sbjct: 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVD 156
Query: 414 FPTALNERQ-RAI 425
+P +LN+ Q RAI
Sbjct: 157 YPISLNDAQKRAI 169
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 60 GTTGMFLARRCIHATGSCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP 119
G++GM L + + K+D Y +LG +A+ ++K+ + L YHPD +
Sbjct: 4 GSSGMALEQ----------TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADV 53
Query: 120 SA------KRKFQEIRDAYETLRDSEKRAQYDRRRS 149
A +KF EI A++ L + E + +YD +RS
Sbjct: 54 PAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSA------KRKFQEIRDAYET 134
K+D Y +LG +A+ ++K+ + L YHPD + A +KF EI A++
Sbjct: 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 135 LRDSEKRAQYDRRR 148
L + E + +YD +R
Sbjct: 69 LGNEETKREYDLQR 82
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 296 VKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISF 355
V+V I G G + G+ G G+L + ++ P F+RD + I
Sbjct: 44 VEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPL 103
Query: 356 TQAILGGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNF 414
+A+ G V TL + +Q+ I + V P ++ +G GD + F + F
Sbjct: 104 VRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICF 163
Query: 415 PTALNERQRAIL 426
P +L Q+ ++
Sbjct: 164 PKSLTPEQKKLI 175
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 340 FSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQLLVLRGKGL-- 394
F RDG D+ ++ I AI GG+ + +SG ++V I G + PG V+ GKG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 395 AKNGLFLDHGDQYVRFRVNFP 415
K G +G+ ++F + FP
Sbjct: 62 PKYG---GYGNLIIKFTIKFP 79
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 79 SSKRDPYELLGVPENASQD--EIKKAFHMLAKQYHPD-----ANKNNPSAKRKFQEIRDA 131
S+ + +EL G+P D + F L K++HPD + ++ A ++ +I DA
Sbjct: 1 SNAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDA 60
Query: 132 YETLRDSEKRAQY 144
Y+TL+D +RA+Y
Sbjct: 61 YQTLKDPLRRAEY 73
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 80 SKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETL 135
+ +D +++LGV AS+DE+ KA+ LA HPD P ++ F+ + +A L
Sbjct: 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTAL 79
>pdb|2PE4|A Chain A, Structure Of Human Hyaluronidase 1, A Hyaluronan
Hydrolyzing Enzyme Involved In Tumor Growth And
Angiogenesis
Length = 424
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 171 AEGFRYAYQTHFSDSFHKIFSEIFEDETSHFAPDIQVELVL--SFAEAAKGCTKHVSFDA 228
AE FR A + + +IF D T+HF P ++E L S A+ A G VS++
Sbjct: 248 AEAFRVAVAAGDPNLPVLPYVQIFYDTTNHFLPLDELEHSLGESAAQGAAGVVLWVSWEN 307
Query: 229 FVPCDSCHGRGFPADAKTKICSTCRG--IGRVTIPPFTSTCSTCKGLGRIIK 278
+SC A + T G I VT + + C G GR ++
Sbjct: 308 TRTKESCQ-------AIKEYMDTTLGPFILNVTSGALLCSQALCSGHGRCVR 352
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 83 DPYELLGVPENASQDE--IKKAFHMLAKQYHPD-----ANKNNPSAKRKFQEIRDAYETL 135
D + L G+P D + F L +QYHPD + +A ++ I A++TL
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 136 RDSEKRAQY 144
R RA+Y
Sbjct: 62 RHPLMRAEY 70
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 96 QDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Q ++K + L Q+HPD + + AY TL+D +R+QY
Sbjct: 32 QSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQ---AYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 96 QDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQY 144
Q ++K + L Q+HPD + + AY TL+D +R+QY
Sbjct: 24 QSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQ---AYHTLKDPLRRSQY 69
>pdb|2ICH|A Chain A, Crystal Structure Of A Putative Atth (Ne1406) From
Nitrosomonas Europaea At 2.00 A Resolution
pdb|2ICH|B Chain B, Crystal Structure Of A Putative Atth (Ne1406) From
Nitrosomonas Europaea At 2.00 A Resolution
Length = 335
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 182 FSDSFHKIFSEIFEDETSHFAPDIQVELVLSFAEAAKGCTKH 223
F +F + +EI D SHFAPD + ++ ++ A G +H
Sbjct: 45 FQITFFRTATEIDRDNPSHFAPDQLIIAHVALSDPAIGKLQH 86
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 28.5 bits (62), Expect = 7.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 238 RGFPADAKTKICSTCRGIGRVTIPPFTSTCS-----TCKGLGRIIKDHCMTCK 285
R P ++ C C + + I P STC TCKG ++K C CK
Sbjct: 33 RLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCK 85
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.1 bits (61), Expect = 9.6, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 85 YELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRDSEKR 141
++ +G+ + + +++KK + HPD P AK F E+ DA+ + ++
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 111
Query: 142 AQY 144
Y
Sbjct: 112 PLY 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,079,468
Number of Sequences: 62578
Number of extensions: 577512
Number of successful extensions: 1432
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 49
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)