Query 012892
Match_columns 454
No_of_seqs 287 out of 1771
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 5.4E-75 1.2E-79 593.1 42.7 401 23-454 14-429 (431)
2 cd05472 cnd41_like Chloroplast 100.0 5E-59 1.1E-63 456.6 32.8 295 112-453 1-299 (299)
3 KOG1339 Aspartyl protease [Pos 100.0 3.2E-58 7E-63 467.0 36.9 337 107-454 41-397 (398)
4 cd05489 xylanase_inhibitor_I_l 100.0 1E-56 2.2E-61 449.1 31.4 318 119-451 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.1E-55 6.6E-60 434.6 31.2 292 111-454 2-326 (326)
6 PTZ00165 aspartyl protease; Pr 100.0 3.9E-54 8.5E-59 441.9 37.7 306 98-454 109-449 (482)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.9E-54 4E-59 427.6 30.9 295 107-450 5-317 (317)
8 cd05490 Cathepsin_D2 Cathepsin 100.0 9.7E-54 2.1E-58 424.0 31.9 297 108-450 2-325 (325)
9 cd05486 Cathespin_E Cathepsin 100.0 7.8E-54 1.7E-58 423.0 29.0 290 113-450 1-316 (316)
10 cd05488 Proteinase_A_fungi Fun 100.0 3.3E-53 7.2E-58 419.1 31.1 294 107-450 5-320 (320)
11 cd05477 gastricsin Gastricsins 100.0 4E-53 8.7E-58 418.3 31.6 295 110-451 1-318 (318)
12 cd05487 renin_like Renin stimu 100.0 4.6E-53 1E-57 419.1 30.8 296 107-451 3-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 1.5E-52 3.2E-57 413.9 30.9 286 107-450 5-317 (317)
14 cd05485 Cathepsin_D_like Cathe 100.0 3.1E-52 6.7E-57 413.5 30.4 297 107-450 6-329 (329)
15 PTZ00147 plasmepsin-1; Provisi 100.0 3.2E-51 7E-56 417.3 33.8 301 97-452 127-450 (453)
16 cd05473 beta_secretase_like Be 100.0 1.1E-51 2.5E-56 415.1 30.0 307 112-454 3-348 (364)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 8E-51 1.7E-55 413.6 33.4 303 96-452 125-449 (450)
18 cd05476 pepsin_A_like_plant Ch 100.0 9.8E-51 2.1E-55 391.0 28.1 253 112-453 1-265 (265)
19 cd05475 nucellin_like Nucellin 100.0 1.2E-50 2.7E-55 391.8 27.9 256 111-453 1-273 (273)
20 cd06097 Aspergillopepsin_like 100.0 4.3E-48 9.4E-53 375.3 26.7 261 113-450 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.2E-46 2.6E-51 368.3 27.1 269 112-451 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.8E-46 6.1E-51 369.0 21.6 295 112-451 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.2E-44 6.8E-49 348.4 27.3 264 113-450 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 6.2E-33 1.3E-37 247.1 13.1 159 113-282 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 4.1E-28 9E-33 215.8 14.8 149 302-450 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 2.9E-23 6.3E-28 172.3 11.8 105 115-245 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.9 4.7E-05 1E-09 60.8 7.5 93 112-247 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.5 0.015 3.2E-07 48.9 8.2 96 109-247 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.2 0.036 7.8E-07 43.2 8.5 89 115-246 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.5 0.81 1.8E-05 38.4 9.7 103 310-448 21-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 92.1 1.3 2.8E-05 37.2 9.0 92 110-247 14-107 (124)
32 PF08284 RVP_2: Retroviral asp 90.3 0.62 1.4E-05 39.8 5.4 28 424-451 105-132 (135)
33 cd05484 retropepsin_like_LTR_2 90.1 0.37 8E-06 38.0 3.6 30 113-144 1-30 (91)
34 COG3577 Predicted aspartyl pro 90.0 0.7 1.5E-05 41.8 5.6 83 109-230 102-184 (215)
35 TIGR03698 clan_AA_DTGF clan AA 88.0 0.98 2.1E-05 36.9 4.8 24 423-446 84-107 (107)
36 PF13975 gag-asp_proteas: gag- 86.3 1.3 2.7E-05 33.3 4.2 34 109-144 5-38 (72)
37 TIGR02281 clan_AA_DTGA clan AA 84.4 1.9 4E-05 36.1 4.8 36 300-348 9-44 (121)
38 PF11925 DUF3443: Protein of u 82.4 25 0.00054 35.1 12.2 29 114-142 25-58 (370)
39 PF13650 Asp_protease_2: Aspar 80.0 2 4.3E-05 33.1 3.2 29 310-348 3-31 (90)
40 PF12384 Peptidase_A2B: Ty3 tr 79.5 6.3 0.00014 34.6 6.2 21 329-349 48-68 (177)
41 cd05484 retropepsin_like_LTR_2 78.8 2.9 6.4E-05 32.7 3.9 30 309-348 4-33 (91)
42 cd05483 retropepsin_like_bacte 78.8 3.9 8.5E-05 31.8 4.6 29 310-348 7-35 (96)
43 PF00077 RVP: Retroviral aspar 78.7 2.7 5.9E-05 33.4 3.7 28 114-143 7-34 (100)
44 PF13975 gag-asp_proteas: gag- 75.5 4.6 0.0001 30.2 3.9 29 310-348 13-41 (72)
45 cd05482 HIV_retropepsin_like R 69.7 5.8 0.00013 31.1 3.3 25 116-142 2-26 (87)
46 cd06095 RP_RTVL_H_like Retrope 66.2 7.4 0.00016 30.2 3.3 26 116-143 2-27 (86)
47 cd06095 RP_RTVL_H_like Retrope 60.9 9.1 0.0002 29.6 3.0 29 310-348 3-31 (86)
48 PF00077 RVP: Retroviral aspar 55.5 8.3 0.00018 30.5 2.0 27 309-345 9-35 (100)
49 COG3577 Predicted aspartyl pro 48.7 39 0.00085 30.9 5.2 36 299-347 102-137 (215)
50 TIGR03698 clan_AA_DTGF clan AA 41.4 1.2E+02 0.0025 24.6 6.7 24 115-138 2-29 (107)
51 cd05481 retropepsin_like_LTR_1 40.5 28 0.0006 27.5 2.7 21 329-349 13-33 (93)
52 PF12384 Peptidase_A2B: Ty3 tr 40.3 37 0.0008 29.9 3.6 29 114-142 34-62 (177)
53 PF09668 Asp_protease: Asparty 38.3 33 0.00072 28.8 3.0 29 310-348 29-57 (124)
54 COG5550 Predicted aspartyl pro 34.1 22 0.00049 29.6 1.3 25 422-446 93-117 (125)
55 PF02160 Peptidase_A3: Caulifl 32.3 1.3E+02 0.0028 27.5 6.0 27 423-450 91-117 (201)
56 KOG0012 DNA damage inducible p 29.9 3.9E+02 0.0083 26.8 9.1 39 411-451 307-346 (380)
57 PF09668 Asp_protease: Asparty 29.4 88 0.0019 26.3 4.1 36 111-149 23-58 (124)
58 PF13033 DUF3894: Protein of u 20.3 1.2E+02 0.0025 20.6 2.5 16 2-17 6-21 (54)
59 cd05474 SAP_like SAPs, pepsin- 20.1 83 0.0018 30.1 2.7 13 329-341 18-30 (295)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.4e-75 Score=593.09 Aligned_cols=401 Identities=35% Similarity=0.635 Sum_probs=331.1
Q ss_pred hhhhccCCCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHhhhccCCCCCccccCCCcceecc
Q 012892 23 ILYACAGNAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPA 102 (454)
Q Consensus 23 ~~~~~~~~~~~~~~~l~h~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 102 (454)
.+.+..++..+++++|+||++|| ||+++++.++.+ +++++++|+++|++++.++... ..|+
T Consensus 14 ~~~~~~~~~~~~~~~l~h~~~~~-sp~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~--------------~~~~ 74 (431)
T PLN03146 14 ELSAAEAPKGGFTVDLIHRDSPK-SPFYNPSETPSQ----RLRNAFRRSISRVNHFRPTDAS--------------PNDP 74 (431)
T ss_pred hhhhccccCCceEEEEEeCCCCC-CCCCCCCCChhH----HHHHHHHHHHHHHHHHhhcccc--------------CCcc
Confidence 33445567789999999999999 998776555555 7888999999998887654211 1233
Q ss_pred ccCCccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCC
Q 012892 103 KDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATG 182 (454)
Q Consensus 103 ~~~~~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~ 182 (454)
..+...++++|+++|+||||||++.|++||||+++||+|++|.. |..|..+.|||++|+||+.++|+++.|..+..
T Consensus 75 ~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~-C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--- 150 (431)
T PLN03146 75 QSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDD-CYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--- 150 (431)
T ss_pred ccCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcc-cccCCCCcccCCCCCCCcccCCCCcccccCCC---
Confidence 33334557899999999999999999999999999999999974 99888899999999999999999999986543
Q ss_pred CCCCCC-CCCceeeeEeCCCCeEEEeEEEEEEEeCCC----ccccceeeeeeecCCCCCC-CcceeeecCCCCCccceeh
Q 012892 183 NSPACA-SSTCLYGIQYGDSSFSIGFFGKETLTLTPR----DVFPNFLFGCGQNNRGLFG-GAAGLMGLGRDPISLVSQT 256 (454)
Q Consensus 183 ~~~~c~-~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~----~~~~~~~FG~~~~~~~~~~-~~~GilGLg~~~~sl~~q~ 256 (454)
...|. .+.|.|.+.|+||+.+.|.+++|+|+|++. ..++++.|||++++.+.|. ..+||||||++++|+++|+
T Consensus 151 -~~~c~~~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql 229 (431)
T PLN03146 151 -QASCSDENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQL 229 (431)
T ss_pred -CCCCCCCCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHh
Confidence 23465 356999999999998899999999999873 2588999999999887664 5899999999999999999
Q ss_pred hhhcCCcEEEecCCCC---CCCceEEeccCC---CCCeeeEecccCCCCCccEEEEEeEEEECcEEeeecccccc---CC
Q 012892 257 ATKYKKLFSYCLPSSA---SSTGHLTFGPGA---SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT---TA 327 (454)
Q Consensus 257 ~~~~~~~FS~~L~~~~---~~~G~l~fGg~d---~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~---~~ 327 (454)
....+++|||||.+.. ...|+|+||+.. ...+.|+|++.+. .+.+|+|+|++|+||+++++++...|. .+
T Consensus 230 ~~~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g 308 (431)
T PLN03146 230 GSSIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKNGVEEG 308 (431)
T ss_pred hHhhCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccccCCCC
Confidence 8665679999997632 247999999953 2358999998642 257899999999999999988766542 25
Q ss_pred CEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeC
Q 012892 328 GTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASN 407 (454)
Q Consensus 328 ~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 407 (454)
++||||||++++||+++|++|+++|.+++...........++.||+... ...+|+|+|+| +|+++.|++++|+++..
T Consensus 309 ~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~ 385 (431)
T PLN03146 309 NIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS 385 (431)
T ss_pred cEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC
Confidence 7999999999999999999999999998864333333345778998542 25689999999 58999999999999877
Q ss_pred CCeEEEEEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeCCCC
Q 012892 408 ISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 454 (454)
Q Consensus 408 ~~~~C~~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~C~ 454 (454)
.+..|+++.+. .+.+|||+.|||++||+||++++|||||+++|+
T Consensus 386 ~~~~Cl~~~~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 386 EDLVCFAMIPT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred CCcEEEEEecC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 77899998764 236999999999999999999999999999995
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5e-59 Score=456.63 Aligned_cols=295 Identities=57% Similarity=1.066 Sum_probs=253.0
Q ss_pred cEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 012892 112 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 191 (454)
Q Consensus 112 ~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~ 191 (454)
+|+++|.||||||++.|++||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999988754
Q ss_pred ceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCCCCcceeeecCCCCCccceehhhhcCCcEEEecCCC
Q 012892 192 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSS 271 (454)
Q Consensus 192 c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~~~~~GilGLg~~~~sl~~q~~~~~~~~FS~~L~~~ 271 (454)
|.|.+.|++|+.+.|.+++|+|+|++...++++.|||+..+.+.+...+||||||+..+++++|+....+++||+||.+.
T Consensus 34 ~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~ 113 (299)
T cd05472 34 CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDR 113 (299)
T ss_pred CeeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCC
Confidence 27899999998889999999999998337899999999988776667999999999999999999876679999999875
Q ss_pred C-CCCceEEeccCCC--CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 272 A-SSTGHLTFGPGAS--KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 272 ~-~~~G~l~fGg~d~--~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
. ...|+|+|||+|+ +++.|+|++.++..+.+|.|+|++|+|+++.+.+++.....+++||||||++++||+++|++|
T Consensus 114 ~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l 193 (299)
T cd05472 114 SSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAAL 193 (299)
T ss_pred CCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHH
Confidence 4 4589999999986 799999999865556799999999999999987643223336799999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEE-eCCCeEEEEEEeCCCCCCceee
Q 012892 349 RTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYA-SNISQVCLAFAGNSDPTDVSIF 427 (454)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~-~~~~~~C~~~~~~~~~~~~~Il 427 (454)
.+++.+.+...........++.||+.++.....+|+|+|+|.+|++++|++++|++. ...+..|+++...+.....+||
T Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~il 273 (299)
T cd05472 194 RDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSII 273 (299)
T ss_pred HHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEEE
Confidence 999998865433333344556799887766678999999996589999999999984 3456789988876433457999
Q ss_pred chhhhceeEEEEECCCCEEEEEeCCC
Q 012892 428 GNTQQHTLEVVYDVAGGKVGFAAGGC 453 (454)
Q Consensus 428 G~~fl~~~~vvfD~~~~rigfa~~~C 453 (454)
|+.|||++|+|||++++|||||+++|
T Consensus 274 G~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 274 GNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred chHHccceEEEEECCCCEEeEecCCC
Confidence 99999999999999999999999999
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-58 Score=466.95 Aligned_cols=337 Identities=39% Similarity=0.719 Sum_probs=280.3
Q ss_pred ccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCC
Q 012892 107 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPA 186 (454)
Q Consensus 107 ~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~ 186 (454)
...+++|+++|.||||||+|.|++||||+++||+|.+|...|..+..+.|||++||||+.+.|.++.|..... ..
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~-----~~ 115 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ-----SC 115 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc-----Cc
Confidence 4557899999999999999999999999999999999963598765566999999999999999999998753 12
Q ss_pred CCCCCceeeeEeCCCCeEEEeEEEEEEEeCCC--ccccceeeeeeecCCCC-C--CCcceeeecCCCCCccceehhhhc-
Q 012892 187 CASSTCLYGIQYGDSSFSIGFFGKETLTLTPR--DVFPNFLFGCGQNNRGL-F--GGAAGLMGLGRDPISLVSQTATKY- 260 (454)
Q Consensus 187 c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~--~~~~~~~FG~~~~~~~~-~--~~~~GilGLg~~~~sl~~q~~~~~- 260 (454)
|.++.|.|.+.|+||+.+.|.+++|+|+|++. ..++++.|||+..+.+. . ...+||||||++++++.+|+....
T Consensus 116 ~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~ 195 (398)
T KOG1339|consen 116 SPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYN 195 (398)
T ss_pred ccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccC
Confidence 33688999999999888999999999999983 57788999999999753 2 358999999999999999998864
Q ss_pred -CCcEEEecCCCCC---CCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccC--CCEE
Q 012892 261 -KKLFSYCLPSSAS---STGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTT--AGTI 330 (454)
Q Consensus 261 -~~~FS~~L~~~~~---~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~--~~~i 330 (454)
.++||+||.+... ..|.|+||+.|. +.+.|+||+.++. .+|.|.+++|+|+++. .+++..+.. +++|
T Consensus 196 ~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~~~~~i 272 (398)
T KOG1339|consen 196 AINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTDGGGAI 272 (398)
T ss_pred CceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecCCCCEE
Confidence 2459999998754 379999999874 5789999998543 5999999999999976 555444432 6799
Q ss_pred EcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCCe
Q 012892 331 IDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQ 410 (454)
Q Consensus 331 iDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~ 410 (454)
+||||++++||+++|++|.+++.+.++. .......+..||...... ..+|+|+|+|.+|+++.|++++|+++.+.+.
T Consensus 273 iDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~ 349 (398)
T KOG1339|consen 273 IDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGG 349 (398)
T ss_pred EECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCC
Confidence 9999999999999999999999997410 111233445798765433 4599999999658999999999999876554
Q ss_pred E-EEEEEeCCCCCCceeechhhhceeEEEEECC-CCEEEEEe--CCCC
Q 012892 411 V-CLAFAGNSDPTDVSIFGNTQQHTLEVVYDVA-GGKVGFAA--GGCS 454 (454)
Q Consensus 411 ~-C~~~~~~~~~~~~~IlG~~fl~~~~vvfD~~-~~rigfa~--~~C~ 454 (454)
. |+++.........||||+.|||+++++||.. ++|||||+ .+|+
T Consensus 350 ~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 350 GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 4 9987765332258999999999999999999 99999999 8885
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1e-56 Score=449.08 Aligned_cols=318 Identities=28% Similarity=0.513 Sum_probs=260.6
Q ss_pred eCCCCce-EEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCC-------CCCCCCCC
Q 012892 119 IGTPKKD-LSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATG-------NSPACASS 190 (454)
Q Consensus 119 iGtP~q~-~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~-------~~~~c~~~ 190 (454)
+|||-.+ +.|++||||+++||||.+ .+|+||+.++|+++.|.....+.. ....|.++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~---------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~ 66 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA---------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNN 66 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC---------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCC
Confidence 5888777 999999999999999875 357899999999999987654311 12367777
Q ss_pred CceeeeE-eCCCCeEEEeEEEEEEEeCCC-------ccccceeeeeeecCC--CCCCCcceeeecCCCCCccceehhhhc
Q 012892 191 TCLYGIQ-YGDSSFSIGFFGKETLTLTPR-------DVFPNFLFGCGQNNR--GLFGGAAGLMGLGRDPISLVSQTATKY 260 (454)
Q Consensus 191 ~c~~~~~-Ygdgs~~~G~~~~Dtv~~~~~-------~~~~~~~FG~~~~~~--~~~~~~~GilGLg~~~~sl~~q~~~~~ 260 (454)
.|.|... |++|+.+.|++++|+|+|+.. .+++++.|||++++. +.+...+||||||++++|+++|+....
T Consensus 67 ~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 67 TCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred cCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhc
Confidence 8999765 889988999999999999742 268899999998864 344468999999999999999998764
Q ss_pred --CCcEEEecCCCCCCCceEEeccCCC----------CCeeeEecccCCCCCccEEEEEeEEEECcEEeeecccccc---
Q 012892 261 --KKLFSYCLPSSASSTGHLTFGPGAS----------KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT--- 325 (454)
Q Consensus 261 --~~~FS~~L~~~~~~~G~l~fGg~d~----------~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~--- 325 (454)
.++|||||++..+..|.|+||+.+. +.+.|+||+.++..+.+|+|+|++|+||++++.+++..+.
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 3889999997655589999999763 6899999998664568999999999999999987654332
Q ss_pred --CCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCC-CccccccccccCC----cccccCeEEEEEcC-CcEEEE
Q 012892 326 --TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPA-LSLLDTCYDFSKY----STVTLPQISLFFSG-GVEVSV 397 (454)
Q Consensus 326 --~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~Cy~~~~~----~~~~~P~i~~~f~g-g~~~~l 397 (454)
.+++||||||++|+||+++|++|.+++.+++........ ....+.||..... ....+|+|+|+|+| |+++.|
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l 306 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTI 306 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEE
Confidence 268999999999999999999999999998764433222 1223789986421 23579999999976 799999
Q ss_pred cCCCcEEEeCCCeEEEEEEeCCCC-CCceeechhhhceeEEEEECCCCEEEEEeC
Q 012892 398 DKTGIMYASNISQVCLAFAGNSDP-TDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 451 (454)
Q Consensus 398 ~~~~~~~~~~~~~~C~~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~rigfa~~ 451 (454)
++++|+++...+.+|++|.+.+.. ...||||+.|||++|++||++++|||||+.
T Consensus 307 ~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 307 FGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999997777899999876432 457999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.1e-55 Score=434.60 Aligned_cols=292 Identities=24% Similarity=0.509 Sum_probs=243.3
Q ss_pred ccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 012892 111 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASS 190 (454)
Q Consensus 111 ~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~ 190 (454)
+.|+++|+||||||++.|++||||+++||+|.+|.. |..+..+.|+|++|+|++.++|++..|.. ...|.++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~-c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~~~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKN-CGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSCLNN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCC-cCCCCCCCcCcccccccccccCCCccccc-------cCcCCCC
Confidence 589999999999999999999999999999999964 88777789999999999999999999964 2357777
Q ss_pred CceeeeEeCCCCeEEEeEEEEEEEeCCCcccc-------ceeeeeeecCCCCC--CCcceeeecCCCCCccc--------
Q 012892 191 TCLYGIQYGDSSFSIGFFGKETLTLTPRDVFP-------NFLFGCGQNNRGLF--GGAAGLMGLGRDPISLV-------- 253 (454)
Q Consensus 191 ~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~-------~~~FG~~~~~~~~~--~~~~GilGLg~~~~sl~-------- 253 (454)
.|.|.+.|++|+.+.|.+++|+|+|++. .++ ++.|||+....+.+ ...+||||||+...+-+
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~-~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~ 152 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESY-LNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLF 152 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccC-CCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHH
Confidence 8999999999988899999999999973 432 57899999887644 36899999999875321
Q ss_pred eehhhh-cCCcEEEecCCCCCCCceEEeccCCC--------------CCeeeEecccCCCCCccEEEEEeEEEECcEEee
Q 012892 254 SQTATK-YKKLFSYCLPSSASSTGHLTFGPGAS--------------KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLS 318 (454)
Q Consensus 254 ~q~~~~-~~~~FS~~L~~~~~~~G~l~fGg~d~--------------~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~ 318 (454)
.|.... .+++||+||++. .|.|+|||+|+ +++.|+|+.. +.+|.|++++|+|+++...
T Consensus 153 ~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~ 225 (326)
T cd06096 153 TKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSN 225 (326)
T ss_pred HhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccc
Confidence 222221 148999999874 69999999873 5789999987 5789999999999998611
Q ss_pred -eccccccCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEE
Q 012892 319 -IAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSV 397 (454)
Q Consensus 319 -~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l 397 (454)
.... ...+||||||++++||+++|++|.+++ |+|+|+|++|+++.+
T Consensus 226 ~~~~~---~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i 272 (326)
T cd06096 226 SGNTK---GLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDW 272 (326)
T ss_pred eeccc---CCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEE
Confidence 1111 256999999999999999999988765 889999965899999
Q ss_pred cCCCcEEEeCCCeEEEEEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeCCCC
Q 012892 398 DKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 454 (454)
Q Consensus 398 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~C~ 454 (454)
+|++|+++......|+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 273 ~p~~y~~~~~~~~c~~~~~~~---~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 273 KPSSYLYKKESFWCKGGEKSV---SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CHHHhccccCCceEEEEEecC---CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999986544455566543 357999999999999999999999999999994
No 6
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=3.9e-54 Score=441.86 Aligned_cols=306 Identities=21% Similarity=0.397 Sum_probs=247.7
Q ss_pred ceeccccCCccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccc
Q 012892 98 ATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTS 176 (454)
Q Consensus 98 ~~~p~~~~~~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~ 176 (454)
...|+. ++.+.+|+++|+||||||+|.|++||||+++||+|..|. ..|..+ +.|||++||||+.+.+...
T Consensus 109 ~~~~l~---n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~--~~yd~s~SSTy~~~~~~~~---- 179 (482)
T PTZ00165 109 LQQDLL---NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH--RKFDPKKSSTYTKLKLGDE---- 179 (482)
T ss_pred cceecc---cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc--CCCCccccCCcEecCCCCc----
Confidence 455655 567899999999999999999999999999999999994 357655 8999999999998532110
Q ss_pred cccCCCCCCCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC-CCC--CcceeeecCCCCCc--
Q 012892 177 LQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LFG--GAAGLMGLGRDPIS-- 251 (454)
Q Consensus 177 ~~~~~~~~~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~-~~~--~~~GilGLg~~~~s-- 251 (454)
...+.+.||+|+ ..|.+++|+|++++ ..++++.||+++...+ .|. ..|||||||++.++
T Consensus 180 --------------~~~~~i~YGsGs-~~G~l~~DtV~ig~-l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~ 243 (482)
T PTZ00165 180 --------------SAETYIQYGTGE-CVLALGKDTVKIGG-LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFK 243 (482)
T ss_pred --------------cceEEEEeCCCc-EEEEEEEEEEEECC-EEEccEEEEEEEeccccccccccccceeecCCCccccc
Confidence 114669999997 67999999999998 7999999999998755 343 58999999998763
Q ss_pred -------cceehhhh---cCCcEEEecCCCCCCCceEEeccCCC------CCeeeEecccCCCCCccEEEEEeEEEECcE
Q 012892 252 -------LVSQTATK---YKKLFSYCLPSSASSTGHLTFGPGAS------KSVQFTPLSSISGGSSFYGLEMIGISVGGQ 315 (454)
Q Consensus 252 -------l~~q~~~~---~~~~FS~~L~~~~~~~G~l~fGg~d~------~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~ 315 (454)
++.++..+ .++.||+||.+..+..|+|+|||+|+ +++.|+|+.. ..||.|.+++|+|+++
T Consensus 244 s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 244 ESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGK 319 (482)
T ss_pred ccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCE
Confidence 22333332 16899999987655689999999873 4799999987 6899999999999998
Q ss_pred EeeeccccccCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCc--
Q 012892 316 KLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGV-- 393 (454)
Q Consensus 316 ~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~-- 393 (454)
.+...... ..+|+||||+++++|++++++|.+++++. ..|.. ...+|+|+|+| +|.
T Consensus 320 ~~~~~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~-----~~~lP~itf~f-~g~~g 377 (482)
T PTZ00165 320 SLGFCDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSN-----KDSLPRISFVL-EDVNG 377 (482)
T ss_pred EeeecCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccc-----cccCCceEEEE-CCCCC
Confidence 87653322 45999999999999999999999987543 13643 35689999999 443
Q ss_pred ---EEEEcCCCcEEEe----CCCeEEE-EEEeCCC---CCCceeechhhhceeEEEEECCCCEEEEEeCCCC
Q 012892 394 ---EVSVDKTGIMYAS----NISQVCL-AFAGNSD---PTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 454 (454)
Q Consensus 394 ---~~~l~~~~~~~~~----~~~~~C~-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~C~ 454 (454)
++.|+|++|+++. ..+..|+ ++.+.+. .++.||||++|||++|+|||.+++|||||+++|.
T Consensus 378 ~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 378 RKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred ceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 8999999999874 2356898 7876531 2467999999999999999999999999999984
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.9e-54 Score=427.58 Aligned_cols=295 Identities=23% Similarity=0.424 Sum_probs=245.8
Q ss_pred ccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCC
Q 012892 107 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSP 185 (454)
Q Consensus 107 ~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~ 185 (454)
++.+.+|+++|.||||||++.|++||||+++||+|..|. ..|.. .+.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~--~~~f~~~~Sst~~~~~----------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSN--HNRFNPRQSSTYQSTG----------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccc--cCcCCCCCCcceeeCC-----------------
Confidence 345789999999999999999999999999999999994 34654 4899999999998864
Q ss_pred CCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCC---CCcceeeecCCCCCc------cceeh
Q 012892 186 ACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLF---GGAAGLMGLGRDPIS------LVSQT 256 (454)
Q Consensus 186 ~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~---~~~~GilGLg~~~~s------l~~q~ 256 (454)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+.+ ...+||||||++.++ ++.|+
T Consensus 66 ------~~~~~~yg~gs-~~G~~~~D~v~ig~-~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 137 (317)
T cd05478 66 ------QPLSIQYGTGS-MTGILGYDTVQVGG-ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNM 137 (317)
T ss_pred ------cEEEEEECCce-EEEEEeeeEEEECC-EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHH
Confidence 58999999997 79999999999998 689999999998876643 247999999987654 44555
Q ss_pred hhhc---CCcEEEecCCCCCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCE
Q 012892 257 ATKY---KKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGT 329 (454)
Q Consensus 257 ~~~~---~~~FS~~L~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 329 (454)
..+. +++||+||.+.....|+|+|||+|+ +++.|+|+.. +.+|.|.+++|+|+++.+..... ..+
T Consensus 138 ~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~----~~~ 209 (317)
T cd05478 138 MSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGG----CQA 209 (317)
T ss_pred HhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCC----CEE
Confidence 4431 6899999998765679999999873 6999999976 68999999999999998864432 459
Q ss_pred EEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCC
Q 012892 330 IIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNIS 409 (454)
Q Consensus 330 iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 409 (454)
||||||++++||++++++|.+++++... .. .+|.++|.....+|.|+|+| +|+++.||+++|+.+. .
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~~~----~~------~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~--~ 276 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGASQN----QN------GEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYILQD--Q 276 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCccc----cC------CcEEeCCcCcccCCcEEEEE-CCEEEEECHHHheecC--C
Confidence 9999999999999999999998865421 11 13555666556789999999 7899999999999875 6
Q ss_pred eEEE-EEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 410 QVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 410 ~~C~-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
..|+ +|.+.+ ..+.||||++|||++|+|||++++|||||+
T Consensus 277 ~~C~~~~~~~~-~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 277 GSCTSGFQSMG-LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CEEeEEEEeCC-CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 7899 566543 346799999999999999999999999996
No 8
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=9.7e-54 Score=424.00 Aligned_cols=297 Identities=24% Similarity=0.439 Sum_probs=240.8
Q ss_pred cCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc---ccccCCCCCCCCCCCCCccceecCCCccccccccCCCCC
Q 012892 108 VGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV---KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNS 184 (454)
Q Consensus 108 ~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~---~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~ 184 (454)
+.+.+|+++|.||||||++.|++||||+++||+|..|. ..|..+ +.|+|++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH--HKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc--CcCCcccCcceeeCC----------------
Confidence 45789999999999999999999999999999999985 257655 799999999998632
Q ss_pred CCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC-CC--CCcceeeecCCCCCccc------ee
Q 012892 185 PACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISLV------SQ 255 (454)
Q Consensus 185 ~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~-~~--~~~~GilGLg~~~~sl~------~q 255 (454)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .+ ...+||||||++.++.. ++
T Consensus 64 -------~~~~i~Yg~G~-~~G~~~~D~v~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 -------TEFAIQYGSGS-LSGYLSQDTVSIGG-LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred -------cEEEEEECCcE-EEEEEeeeEEEECC-EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHH
Confidence 68999999996 79999999999998 6899999999988765 23 25799999999877643 23
Q ss_pred hhhh---cCCcEEEecCCCCC--CCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccC
Q 012892 256 TATK---YKKLFSYCLPSSAS--STGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTT 326 (454)
Q Consensus 256 ~~~~---~~~~FS~~L~~~~~--~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~ 326 (454)
+..+ .++.||+||.+..+ ..|+|+|||+|+ +++.|+|+.. ..+|.|++++|+||++.......
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~---- 206 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKGG---- 206 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCCC----
Confidence 3332 26899999986532 479999999884 6899999976 67999999999999875432221
Q ss_pred CCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEe
Q 012892 327 AGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYAS 406 (454)
Q Consensus 327 ~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 406 (454)
..+||||||+++++|++++++|.+++++. +...+ +|.++|.....+|+|+|+| ||+++.|+|++|+++.
T Consensus 207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~------~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~~~~ 275 (325)
T cd05490 207 CEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG------EYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYILKV 275 (325)
T ss_pred CEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC------CEEecccccccCCCEEEEE-CCEEEEEChHHeEEec
Confidence 46999999999999999999999988643 21111 2444555556789999999 7899999999999875
Q ss_pred C--CCeEEE-EEEeCC---CCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 407 N--ISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 407 ~--~~~~C~-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
. ....|+ +|...+ .....||||+.|||++|+|||++++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 3 246899 566532 2345799999999999999999999999996
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.8e-54 Score=422.97 Aligned_cols=290 Identities=23% Similarity=0.450 Sum_probs=239.0
Q ss_pred EEEEEEeCCCCceEEEEEECCCceeeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 012892 113 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 191 (454)
Q Consensus 113 Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~ 191 (454)
|+++|+||||||++.|++||||+++||+|..|. ..|..+ +.|||++|+|++...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~--~~y~~~~SsT~~~~~----------------------- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH--NRFQPSESSTYVSNG----------------------- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc--ceECCCCCcccccCC-----------------------
Confidence 889999999999999999999999999999994 358755 899999999998753
Q ss_pred ceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC-CC--CCcceeeecCCCCCcc----------ceehhh
Q 012892 192 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISL----------VSQTAT 258 (454)
Q Consensus 192 c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~-~~--~~~~GilGLg~~~~sl----------~~q~~~ 258 (454)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+..+.+ .+ ...+||||||++.++. .+|...
T Consensus 56 ~~~~i~Yg~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 56 EAFSIQYGTGS-LTGIIGIDQVTVEG-ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred cEEEEEeCCcE-EEEEeeecEEEECC-EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 69999999996 79999999999998 6899999999987755 23 2689999999987653 233333
Q ss_pred hcCCcEEEecCCCC--CCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEEc
Q 012892 259 KYKKLFSYCLPSSA--SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIID 332 (454)
Q Consensus 259 ~~~~~FS~~L~~~~--~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiD 332 (454)
. .+.||+||.+.. ...|+|+|||+|+ +++.|+|+.. ..+|.|++++|+|+++.+..+.. ..+|||
T Consensus 134 ~-~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~----~~aiiD 204 (316)
T cd05486 134 E-LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG----CQAIVD 204 (316)
T ss_pred C-CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----CEEEEC
Confidence 3 589999998643 2479999999884 6899999976 68999999999999988754332 459999
Q ss_pred ccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEe--CCCe
Q 012892 333 SGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYAS--NISQ 410 (454)
Q Consensus 333 SGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~--~~~~ 410 (454)
|||+++++|++++++|.+.+++. . .. .+|.++|.....+|+|+|+| +|++++|++++|++.. ..+.
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~----~-~~------~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~ 272 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGAT----A-TD------GEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGG 272 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCc----c-cC------CcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCCCC
Confidence 99999999999999998877543 1 11 13555565556799999999 7899999999999874 3356
Q ss_pred EEE-EEEeCC---CCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 411 VCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 411 ~C~-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
.|+ +|.... ...+.||||+.|||++|+|||.+++|||||+
T Consensus 273 ~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 273 YCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 898 676542 2245799999999999999999999999996
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.3e-53 Score=419.09 Aligned_cols=294 Identities=27% Similarity=0.478 Sum_probs=243.4
Q ss_pred ccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCC
Q 012892 107 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSP 185 (454)
Q Consensus 107 ~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~ 185 (454)
++.+..|+++|.||||+|++.|++||||+++||+|..|. ..|..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~~----------------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKANG----------------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeCC-----------------
Confidence 345788999999999999999999999999999999994 358755 799999999988643
Q ss_pred CCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCC-C--CCcceeeecCCCCCccce--------
Q 012892 186 ACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL-F--GGAAGLMGLGRDPISLVS-------- 254 (454)
Q Consensus 186 ~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~-~--~~~~GilGLg~~~~sl~~-------- 254 (454)
|.|.+.|++|+ +.|.+++|+|++++ ..++++.|||++...+. + ...+||||||++..+...
T Consensus 66 ------~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 137 (320)
T cd05488 66 ------TEFKIQYGSGS-LEGFVSQDTLSIGD-LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNM 137 (320)
T ss_pred ------CEEEEEECCce-EEEEEEEeEEEECC-EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHH
Confidence 68999999997 79999999999998 68899999999877663 2 367999999998876543
Q ss_pred --ehhhhcCCcEEEecCCCCCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCC
Q 012892 255 --QTATKYKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAG 328 (454)
Q Consensus 255 --q~~~~~~~~FS~~L~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~ 328 (454)
|.... ++.||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|++++|+||++.+.... ..
T Consensus 138 ~~qg~i~-~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~-----~~ 207 (320)
T cd05488 138 INQGLLD-EPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN-----TG 207 (320)
T ss_pred HhcCCCC-CCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC-----Ce
Confidence 22222 6899999998655689999999884 6899999986 6789999999999998875442 35
Q ss_pred EEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCC
Q 012892 329 TIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNI 408 (454)
Q Consensus 329 ~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 408 (454)
++|||||++++||++++++|.+++++.. . ...+|.++|.....+|.|+|+| +|+++.|++++|+++.
T Consensus 208 ~ivDSGtt~~~lp~~~~~~l~~~~~~~~----~------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 208 AAIDTGTSLIALPSDLAEMLNAEIGAKK----S------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred EEEcCCcccccCCHHHHHHHHHHhCCcc----c------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC--
Confidence 9999999999999999999998886431 1 1224666666666799999999 7899999999999864
Q ss_pred CeEEE-EEEeCC---CCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 409 SQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 409 ~~~C~-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
+..|+ .+...+ ...+.||||+.|||++|+|||++++|||||+
T Consensus 275 ~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 45799 454432 1234799999999999999999999999996
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4e-53 Score=418.33 Aligned_cols=295 Identities=24% Similarity=0.473 Sum_probs=244.4
Q ss_pred cccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCC
Q 012892 110 AGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACA 188 (454)
Q Consensus 110 ~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~ 188 (454)
+..|+++|.||||||++.|++||||+++||+|..|. ..|..+ +.|||++|+|++...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~--~~f~~~~SsT~~~~~-------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH--TKFNPSQSSTYSTNG-------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc--CCCCcccCCCceECC--------------------
Confidence 357999999999999999999999999999999994 357654 899999999998753
Q ss_pred CCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCC-C--CCcceeeecCCCCC------ccceehhhh
Q 012892 189 SSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL-F--GGAAGLMGLGRDPI------SLVSQTATK 259 (454)
Q Consensus 189 ~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~-~--~~~~GilGLg~~~~------sl~~q~~~~ 259 (454)
|.|++.|++|+ +.|.+++|+|++++ ..++++.|||++...+. + ...+||||||++.. ++++|+..+
T Consensus 59 ---~~~~~~Yg~Gs-~~G~~~~D~i~~g~-~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 59 ---ETFSLQYGSGS-LTGIFGYDTVTVQG-IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred ---cEEEEEECCcE-EEEEEEeeEEEECC-EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 69999999997 79999999999998 68999999999987652 2 35799999998643 455566554
Q ss_pred c---CCcEEEecCCCC-CCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEE
Q 012892 260 Y---KKLFSYCLPSSA-SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTII 331 (454)
Q Consensus 260 ~---~~~FS~~L~~~~-~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ii 331 (454)
. ++.||+||.+.. ...|.|+|||+|+ +++.|+|+.. ..+|.|++++|+|+++++...... ..+||
T Consensus 134 g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~---~~~ii 206 (318)
T cd05477 134 NLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG---CQAIV 206 (318)
T ss_pred CCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC---ceeeE
Confidence 2 689999998753 2479999999884 6799999976 679999999999999987543322 45999
Q ss_pred cccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCCeE
Q 012892 332 DSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQV 411 (454)
Q Consensus 332 DSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~ 411 (454)
||||++++||++++++|++++++... .. .+|.++|.....+|.|+|+| +|+++.|++++|+.+. +..
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~----~~------~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~--~~~ 273 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQD----QY------GQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN--NGY 273 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccc----cC------CCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC--CCe
Confidence 99999999999999999999876521 11 24666666666789999999 7899999999999875 567
Q ss_pred EE-EEEeCC----CCCCceeechhhhceeEEEEECCCCEEEEEeC
Q 012892 412 CL-AFAGNS----DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 451 (454)
Q Consensus 412 C~-~~~~~~----~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~ 451 (454)
|+ ++.+.. .+...+|||+.|||++|++||++++|||||++
T Consensus 274 C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 274 CTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 98 776531 12347999999999999999999999999985
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.6e-53 Score=419.13 Aligned_cols=296 Identities=23% Similarity=0.409 Sum_probs=243.7
Q ss_pred ccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccc---cccCCCCCCCCCCCCCccceecCCCccccccccCCCC
Q 012892 107 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVK---YCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGN 183 (454)
Q Consensus 107 ~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~---~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~ 183 (454)
++.+..|+++|+||||+|+++|++||||+++||+|..|.. .|..+ +.|+|++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH--NLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc--CcCCCCCCeeeeECC---------------
Confidence 3557899999999999999999999999999999888843 47654 799999999998753
Q ss_pred CCCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC-CC--CCcceeeecCCCCCc---------
Q 012892 184 SPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPIS--------- 251 (454)
Q Consensus 184 ~~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~-~~--~~~~GilGLg~~~~s--------- 251 (454)
|.|++.|++|+ +.|.+++|+|++++ ..+ ++.||++....+ .+ ...+||||||++..+
T Consensus 66 --------~~~~~~Yg~g~-~~G~~~~D~v~~g~-~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 66 --------TEFTIHYASGT-VKGFLSQDIVTVGG-IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred --------EEEEEEeCCce-EEEEEeeeEEEECC-EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHH
Confidence 69999999997 89999999999997 456 478999987643 22 368999999998665
Q ss_pred -cceehhhhcCCcEEEecCCCC--CCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccc
Q 012892 252 -LVSQTATKYKKLFSYCLPSSA--SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVF 324 (454)
Q Consensus 252 -l~~q~~~~~~~~FS~~L~~~~--~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 324 (454)
|++|.... ++.||+||.+.+ ...|.|+|||+|+ +++.|+|+.. ..+|.|++++|+|+++.+.....
T Consensus 135 ~L~~qg~i~-~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~-- 207 (326)
T cd05487 135 NIMSQGVLK-EDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCEDG-- 207 (326)
T ss_pred HHHhcCCCC-CCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCCC--
Confidence 45665544 789999998754 2479999999884 6899999875 67999999999999998754332
Q ss_pred cCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEE
Q 012892 325 TTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMY 404 (454)
Q Consensus 325 ~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 404 (454)
..+||||||++++||++++++|++++++.. . . .+|.++|.....+|+|+|+| ||..++|++++|++
T Consensus 208 --~~aiiDSGts~~~lP~~~~~~l~~~~~~~~---~--~------~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~ 273 (326)
T cd05487 208 --CTAVVDTGASFISGPTSSISKLMEALGAKE---R--L------GDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDYVL 273 (326)
T ss_pred --CEEEECCCccchhCcHHHHHHHHHHhCCcc---c--C------CCEEEeccccCCCCCEEEEE-CCEEEEeCHHHhEE
Confidence 359999999999999999999999986541 1 1 13555666666789999999 78999999999998
Q ss_pred EeCC--CeEEE-EEEeCC---CCCCceeechhhhceeEEEEECCCCEEEEEeC
Q 012892 405 ASNI--SQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 451 (454)
Q Consensus 405 ~~~~--~~~C~-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~ 451 (454)
+... +..|+ +|...+ ..++.||||+.|||++|+|||++++|||||++
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 274 QDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 8532 56898 777542 22357999999999999999999999999986
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.5e-52 Score=413.85 Aligned_cols=286 Identities=27% Similarity=0.487 Sum_probs=234.3
Q ss_pred ccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc--ccccCCCCCCCCCCCCCccceecCCCccccccccCCCCC
Q 012892 107 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV--KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNS 184 (454)
Q Consensus 107 ~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~--~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~ 184 (454)
++.+.+|+++|.||||||++.|++||||+++||+|..|. ..|..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKNG---------------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccCC----------------
Confidence 456789999999999999999999999999999999994 358765 899999999988753
Q ss_pred CCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC-CC--CCcceeeecCCCCCcc---------
Q 012892 185 PACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISL--------- 252 (454)
Q Consensus 185 ~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~-~~--~~~~GilGLg~~~~sl--------- 252 (454)
+.+.+.|++|+ +.|.+++|+|+|++ ..++++.||+++...+ .+ ...+||||||++..+.
T Consensus 67 -------~~~~i~Yg~G~-~~G~~~~D~v~ig~-~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 67 -------TSASIQYGTGS-ISGFFSQDSVTVGD-LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred -------CEEEEEcCCce-EEEEEEeeEEEECC-EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHH
Confidence 47899999997 78999999999998 6899999999987654 22 2679999999987653
Q ss_pred -ceehhhhcCCcEEEecCCCC--CCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeecccccc
Q 012892 253 -VSQTATKYKKLFSYCLPSSA--SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT 325 (454)
Q Consensus 253 -~~q~~~~~~~~FS~~L~~~~--~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~ 325 (454)
++|.... ++.||+||.+.. ...|+|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+......
T Consensus 138 l~~qg~i~-~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~-- 210 (317)
T cd06098 138 MVEQGLVK-EPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCAGG-- 210 (317)
T ss_pred HHhcCCCC-CCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecCCC--
Confidence 2333332 579999998653 2479999999884 6899999976 679999999999999987654332
Q ss_pred CCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEE
Q 012892 326 TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYA 405 (454)
Q Consensus 326 ~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 405 (454)
..+||||||+++++|+++++++. ....|+. ...+|+|+|+| +|++++|++++|+++
T Consensus 211 -~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~-----~~~~P~i~f~f-~g~~~~l~~~~yi~~ 266 (317)
T cd06098 211 -CAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNS-----LSSMPNVSFTI-GGKTFELTPEQYILK 266 (317)
T ss_pred -cEEEEecCCcceeCCHHHHHhhh-----------------ccCCccc-----cccCCcEEEEE-CCEEEEEChHHeEEe
Confidence 35999999999999998876653 1123643 34689999999 789999999999987
Q ss_pred eC--CCeEEE-EEEeCC---CCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 406 SN--ISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 406 ~~--~~~~C~-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
.. ....|+ ++...+ ..+..||||+.|||++|+|||++++|||||+
T Consensus 267 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 267 VGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred ecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 53 245898 666432 2245799999999999999999999999995
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.1e-52 Score=413.50 Aligned_cols=297 Identities=25% Similarity=0.451 Sum_probs=243.1
Q ss_pred ccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc---ccccCCCCCCCCCCCCCccceecCCCccccccccCCCC
Q 012892 107 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV---KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGN 183 (454)
Q Consensus 107 ~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~---~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~ 183 (454)
++.+.+|+++|+||||+|++.|++||||+++||+|..|. ..|..+ +.|+|++|+|++...
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~Sst~~~~~--------------- 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLH--NKYDSTKSSTYKKNG--------------- 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCC--CeECCcCCCCeEECC---------------
Confidence 466789999999999999999999999999999999994 247543 789999999988753
Q ss_pred CCCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC-CC--CCcceeeecCCCCCcc------ce
Q 012892 184 SPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISL------VS 254 (454)
Q Consensus 184 ~~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~-~~--~~~~GilGLg~~~~sl------~~ 254 (454)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+ .+ ...+||||||++.++. ..
T Consensus 69 --------~~~~i~Y~~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~ 138 (329)
T cd05485 69 --------TEFAIQYGSGS-LSGFLSTDTVSVGG-VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFY 138 (329)
T ss_pred --------eEEEEEECCce-EEEEEecCcEEECC-EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHH
Confidence 69999999997 79999999999998 6889999999987765 23 2579999999987763 23
Q ss_pred ehhhh---cCCcEEEecCCCCC--CCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeecccccc
Q 012892 255 QTATK---YKKLFSYCLPSSAS--STGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT 325 (454)
Q Consensus 255 q~~~~---~~~~FS~~L~~~~~--~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~ 325 (454)
|+..+ .++.||+||.+..+ ..|+|+|||+|+ +++.|+|+.. +.+|.|.+++++|+++.+....
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~---- 210 (329)
T cd05485 139 NMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGG---- 210 (329)
T ss_pred HHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCCC----
Confidence 33332 16899999987543 479999999874 6899999976 6899999999999998764221
Q ss_pred CCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEE
Q 012892 326 TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYA 405 (454)
Q Consensus 326 ~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 405 (454)
..+||||||+++++|++++++|.+++++. ... ..+|.++|.....+|+|+|+| ||+++.|++++|+++
T Consensus 211 -~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~yi~~ 278 (329)
T cd05485 211 -CQAIADTGTSLIAGPVDEIEKLNNAIGAK----PII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKDYVLK 278 (329)
T ss_pred -cEEEEccCCcceeCCHHHHHHHHHHhCCc----ccc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHHeEEE
Confidence 35999999999999999999999888653 111 124666666666789999999 789999999999988
Q ss_pred eC--CCeEEE-EEEeCC---CCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 406 SN--ISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 406 ~~--~~~~C~-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
.. ....|+ ++...+ ...+.||||+.|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 279 VTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 53 246899 676532 2245799999999999999999999999985
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.2e-51 Score=417.29 Aligned_cols=301 Identities=20% Similarity=0.365 Sum_probs=240.1
Q ss_pred cceeccccCCccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCcccc
Q 012892 97 DATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICT 175 (454)
Q Consensus 97 ~~~~p~~~~~~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~ 175 (454)
...+|+. +..+.+|+++|+||||||++.|++||||+++||+|..|. ..|..+ +.|||++|+|++...
T Consensus 127 ~~~v~L~---n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~--~~yd~s~SsT~~~~~------- 194 (453)
T PTZ00147 127 FDNVELK---DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK--NLYDSSKSKTYEKDG------- 194 (453)
T ss_pred CCeeecc---ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC--CccCCccCcceEECC-------
Confidence 4567775 355789999999999999999999999999999999994 357654 899999999998754
Q ss_pred ccccCCCCCCCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCC---C--CCcceeeecCCCCC
Q 012892 176 SLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL---F--GGAAGLMGLGRDPI 250 (454)
Q Consensus 176 ~~~~~~~~~~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~---~--~~~~GilGLg~~~~ 250 (454)
|.|++.|++|+ +.|.+++|+|++++ .+++ ..|+++.+..+. + ...+||||||++.+
T Consensus 195 ----------------~~f~i~Yg~Gs-vsG~~~~DtVtiG~-~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~ 255 (453)
T PTZ00147 195 ----------------TKVEMNYVSGT-VSGFFSKDLVTIGN-LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDL 255 (453)
T ss_pred ----------------CEEEEEeCCCC-EEEEEEEEEEEECC-EEEE-EEEEEEEeccCcccccccccccceecccCCcc
Confidence 58999999996 89999999999998 5777 579998876541 1 25899999999876
Q ss_pred cc----------ceehhhhcCCcEEEecCCCCCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEE
Q 012892 251 SL----------VSQTATKYKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQK 316 (454)
Q Consensus 251 sl----------~~q~~~~~~~~FS~~L~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~ 316 (454)
+. ..|.... +++||+||++.....|.|+|||+|+ +++.|+|+.. +.+|.|.++ +.+++..
T Consensus 256 S~~~~~p~~~~L~~qg~I~-~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~ 329 (453)
T PTZ00147 256 SIGSVDPYVVELKNQNKIE-QAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVS 329 (453)
T ss_pred ccccCCCHHHHHHHcCCCC-ccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEe
Confidence 53 2233333 6899999987655689999999883 7999999975 679999998 5777643
Q ss_pred eeeccccccCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEE
Q 012892 317 LSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVS 396 (454)
Q Consensus 317 ~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~ 396 (454)
. . ...+||||||+++++|+++++++.+++.+.. .+. . ......|+ . ..+|+++|+| +|.+++
T Consensus 330 ~--~-----~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~-~-~~y~~~C~-----~-~~lP~~~f~f-~g~~~~ 391 (453)
T PTZ00147 330 S--E-----KANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPF-L-PLYVTTCN-----N-TKLPTLEFRS-PNKVYT 391 (453)
T ss_pred c--C-----ceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCC-C-CeEEEeCC-----C-CCCCeEEEEE-CCEEEE
Confidence 2 1 1459999999999999999999999886531 111 1 11223464 2 4689999999 689999
Q ss_pred EcCCCcEEEeC--CCeEEE-EEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeCC
Q 012892 397 VDKTGIMYASN--ISQVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGG 452 (454)
Q Consensus 397 l~~~~~~~~~~--~~~~C~-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~ 452 (454)
|+|++|+.+.. ....|+ ++.+.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 392 L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 392 LEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99999997632 346798 687754334579999999999999999999999999975
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.1e-51 Score=415.12 Aligned_cols=307 Identities=22% Similarity=0.367 Sum_probs=234.6
Q ss_pred cEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 012892 112 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 191 (454)
Q Consensus 112 ~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~ 191 (454)
.|+++|.||||+|++.|+|||||+++||+|.+| |. .++.|||++|+|++..+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~---~~--~~~~f~~~~SsT~~~~~----------------------- 54 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH---PF--IHTYFHRELSSTYRDLG----------------------- 54 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCC---cc--ccccCCchhCcCcccCC-----------------------
Confidence 699999999999999999999999999999987 32 23789999999998864
Q ss_pred ceeeeEeCCCCeEEEeEEEEEEEeCCCcc-ccceeeeeeecCCCCC-C--CcceeeecCCCCC------------cccee
Q 012892 192 CLYGIQYGDSSFSIGFFGKETLTLTPRDV-FPNFLFGCGQNNRGLF-G--GAAGLMGLGRDPI------------SLVSQ 255 (454)
Q Consensus 192 c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~-~~~~~FG~~~~~~~~~-~--~~~GilGLg~~~~------------sl~~q 255 (454)
|.|++.|++|+ +.|.+++|+|+|++... .-.+.|++.....+.+ . ..+||||||++.+ +|++|
T Consensus 55 ~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 55 KGVTVPYTQGS-WEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred ceEEEEECcce-EEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 68999999996 68999999999985211 1112355665555433 2 4799999999876 35566
Q ss_pred hhhhcCCcEEEecCC---------CCCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccc
Q 012892 256 TATKYKKLFSYCLPS---------SASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAAS 322 (454)
Q Consensus 256 ~~~~~~~~FS~~L~~---------~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~ 322 (454)
... .++||++|.. .....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+|+++.+..+..
T Consensus 134 ~~~--~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~ 207 (364)
T cd05473 134 TGI--PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCK 207 (364)
T ss_pred cCC--ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecccccc
Confidence 553 4799998742 112479999999884 6899999986 67899999999999998876544
Q ss_pred cccCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCC--CccccccccccCCcccccCeEEEEEcCC-----cEE
Q 012892 323 VFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPA--LSLLDTCYDFSKYSTVTLPQISLFFSGG-----VEV 395 (454)
Q Consensus 323 ~~~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~i~~~f~gg-----~~~ 395 (454)
.+....+||||||++++||+++|++|.++++++......... ......|+.........+|+|+|+|+|+ .++
T Consensus 208 ~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 208 EYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred cccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEE
Confidence 333246999999999999999999999999987532111111 1112358764322223689999999652 478
Q ss_pred EEcCCCcEEEeC---CCeEEEEEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeCCCC
Q 012892 396 SVDKTGIMYASN---ISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 454 (454)
Q Consensus 396 ~l~~~~~~~~~~---~~~~C~~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~C~ 454 (454)
.|+|++|+.... .+..|+++.... ..+.+|||+.|||++|+|||++++|||||+++|.
T Consensus 288 ~l~p~~Y~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 288 TILPQLYLRPVEDHGTQLDCYKFAISQ-STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred EECHHHhhhhhccCCCcceeeEEeeec-CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 999999987642 246898643321 2346999999999999999999999999999995
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=8e-51 Score=413.57 Aligned_cols=303 Identities=21% Similarity=0.376 Sum_probs=239.3
Q ss_pred CcceeccccCCccCcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccc
Q 012892 96 DDATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTIC 174 (454)
Q Consensus 96 ~~~~~p~~~~~~~~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~~~~C 174 (454)
....+|+. ++.+.+|+++|.||||||++.|++||||+++||+|..|. ..|..+ +.|||++|+|++..+
T Consensus 125 ~~~~~~l~---d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~--~~yd~s~SsT~~~~~------ 193 (450)
T PTZ00013 125 ENDVIELD---DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK--NLYDSSKSKSYEKDG------ 193 (450)
T ss_pred CCCceeee---ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC--CCccCccCcccccCC------
Confidence 34456765 345678999999999999999999999999999999994 358755 799999999998754
Q ss_pred cccccCCCCCCCCCCCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC---CC--CCcceeeecCCCC
Q 012892 175 TSLQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG---LF--GGAAGLMGLGRDP 249 (454)
Q Consensus 175 ~~~~~~~~~~~~c~~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~---~~--~~~~GilGLg~~~ 249 (454)
|.|.+.|++|+ +.|.+++|+|++++ .+++ ..|+++.+..+ .+ ...+||||||++.
T Consensus 194 -----------------~~~~i~YG~Gs-v~G~~~~Dtv~iG~-~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 194 -----------------TKVDITYGSGT-VKGFFSKDLVTLGH-LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred -----------------cEEEEEECCce-EEEEEEEEEEEECC-EEEc-cEEEEEEeccccccceecccccceecccCCc
Confidence 68999999997 89999999999998 5776 68888876543 12 2579999999987
Q ss_pred Ccc------ceehhhh---cCCcEEEecCCCCCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEE
Q 012892 250 ISL------VSQTATK---YKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQK 316 (454)
Q Consensus 250 ~sl------~~q~~~~---~~~~FS~~L~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~ 316 (454)
++. +.|+..+ .+++||+||++.+...|.|+|||+|+ +++.|+|+.. +.+|.|+++ +.+|...
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQT 328 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECcee
Confidence 653 2333332 16899999987655689999999984 7899999975 679999998 6776543
Q ss_pred eeeccccccCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEE
Q 012892 317 LSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVS 396 (454)
Q Consensus 317 ~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~ 396 (454)
. . ...+||||||+++++|+++++++.++++... .+. .+ ....+|+ . ..+|+|+|+| +|.+++
T Consensus 329 ~--~-----~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~-~~-~y~~~C~-----~-~~lP~i~F~~-~g~~~~ 390 (450)
T PTZ00013 329 M--Q-----KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPF-LP-FYVTTCD-----N-KEMPTLEFKS-ANNTYT 390 (450)
T ss_pred c--c-----ccceEECCCCccccCCHHHHHHHHHHhCCee--cCC-CC-eEEeecC-----C-CCCCeEEEEE-CCEEEE
Confidence 2 1 1459999999999999999999999886531 111 11 1223453 2 4689999999 689999
Q ss_pred EcCCCcEEEe--CCCeEEE-EEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeCC
Q 012892 397 VDKTGIMYAS--NISQVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGG 452 (454)
Q Consensus 397 l~~~~~~~~~--~~~~~C~-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~ 452 (454)
|+|++|+.+. ..+..|+ ++.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 391 L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 391 LEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9999998753 2356898 777654344689999999999999999999999999975
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=9.8e-51 Score=390.99 Aligned_cols=253 Identities=45% Similarity=0.827 Sum_probs=220.8
Q ss_pred cEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 012892 112 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 191 (454)
Q Consensus 112 ~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~ 191 (454)
+|+++|+||||||++.|++||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~----------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--C----------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--C-----------------------------------------------
Confidence 599999999999999999999999999976 1
Q ss_pred ceeeeEeCCCCeEEEeEEEEEEEeCCCc-cccceeeeeeecCCC-CCCCcceeeecCCCCCccceehhhhcCCcEEEecC
Q 012892 192 CLYGIQYGDSSFSIGFFGKETLTLTPRD-VFPNFLFGCGQNNRG-LFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLP 269 (454)
Q Consensus 192 c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~-~~~~~~FG~~~~~~~-~~~~~~GilGLg~~~~sl~~q~~~~~~~~FS~~L~ 269 (454)
.|.+.|+||+.+.|.+++|+|+|++.. .++++.|||+....+ .....+||||||+...|+++|+.... ++||+||.
T Consensus 32 -~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~ 109 (265)
T cd05476 32 -SYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLV 109 (265)
T ss_pred -ceEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEcc
Confidence 678899999889999999999999832 789999999998875 22368999999999999999998874 89999998
Q ss_pred CC--CCCCceEEeccCCC---CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccc-----cCCCEEEcccccCcc
Q 012892 270 SS--ASSTGHLTFGPGAS---KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVF-----TTAGTIIDSGTVITR 339 (454)
Q Consensus 270 ~~--~~~~G~l~fGg~d~---~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~-----~~~~~iiDSGT~~~~ 339 (454)
+. ....|+|+||++|+ +++.|+|++.++....+|.|++++|+|+++.+.++...+ ....+||||||++++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~ 189 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTY 189 (265)
T ss_pred CCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceE
Confidence 75 34589999999997 899999999865446789999999999999886533221 125799999999999
Q ss_pred CCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCCeEEEEEEeCC
Q 012892 340 LPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNS 419 (454)
Q Consensus 340 lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~C~~~~~~~ 419 (454)
||+++| |+|+|+|.+|.++.+++++|+++...+..|+++....
T Consensus 190 lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~ 232 (265)
T cd05476 190 LPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSS 232 (265)
T ss_pred cCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCC
Confidence 999877 8899999658999999999999876678999888753
Q ss_pred CCCCceeechhhhceeEEEEECCCCEEEEEeCCC
Q 012892 420 DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 453 (454)
Q Consensus 420 ~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~C 453 (454)
..+.+|||++|||++|++||++++|||||+++|
T Consensus 233 -~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 233 -SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred -CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 456899999999999999999999999999999
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.2e-50 Score=391.81 Aligned_cols=256 Identities=33% Similarity=0.610 Sum_probs=214.4
Q ss_pred ccEEEEEEeCCCCceEEEEEECCCceeeEeCC-CccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCC
Q 012892 111 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCE-PCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACAS 189 (454)
Q Consensus 111 ~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~-~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~ 189 (454)
++|+++|.||||||++.|++||||+++||+|+ +|.. |
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~-c----------------------------------------- 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTG-C----------------------------------------- 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCC-C-----------------------------------------
Confidence 47999999999999999999999999999984 5632 4
Q ss_pred CCceeeeEeCCCCeEEEeEEEEEEEeCC---CccccceeeeeeecCCCCC----CCcceeeecCCCCCccceehhhh--c
Q 012892 190 STCLYGIQYGDSSFSIGFFGKETLTLTP---RDVFPNFLFGCGQNNRGLF----GGAAGLMGLGRDPISLVSQTATK--Y 260 (454)
Q Consensus 190 ~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~---~~~~~~~~FG~~~~~~~~~----~~~~GilGLg~~~~sl~~q~~~~--~ 260 (454)
.|.|.+.|+|++.+.|.+++|+|+|+. ...++++.|||+..+.+.+ ...+||||||+++.++++|+..+ .
T Consensus 39 -~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i 117 (273)
T cd05475 39 -QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGII 117 (273)
T ss_pred -cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCc
Confidence 168999999888899999999999963 2367899999998775532 26899999999999999998765 2
Q ss_pred CCcEEEecCCCCCCCceEEeccCC--CCCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEEcccccCc
Q 012892 261 KKLFSYCLPSSASSTGHLTFGPGA--SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVIT 338 (454)
Q Consensus 261 ~~~FS~~L~~~~~~~G~l~fGg~d--~~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDSGT~~~ 338 (454)
+++||+||++. ..|.|+||+.. .+++.|+|+..++. ..+|.|++.+|+|+++.+.. . ..++||||||+++
T Consensus 118 ~~~Fs~~l~~~--~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~--~---~~~~ivDTGTt~t 189 (273)
T cd05475 118 KNVIGHCLSSN--GGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGG--K---GLEVVFDSGSSYT 189 (273)
T ss_pred CceEEEEccCC--CCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcC--C---CceEEEECCCceE
Confidence 57899999873 36899999743 36899999987542 57899999999999985422 1 1469999999999
Q ss_pred cCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCC---cEEEEcCCCcEEEeCCCeEEEEE
Q 012892 339 RLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGG---VEVSVDKTGIMYASNISQVCLAF 415 (454)
Q Consensus 339 ~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~~~~C~~~ 415 (454)
+||+++| +|+|+|+|+++ ++++|++++|+++...+..|+++
T Consensus 190 ~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~ 233 (273)
T cd05475 190 YFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGI 233 (273)
T ss_pred EcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEE
Confidence 9999876 58899999543 79999999999986667789988
Q ss_pred EeCCC--CCCceeechhhhceeEEEEECCCCEEEEEeCCC
Q 012892 416 AGNSD--PTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 453 (454)
Q Consensus 416 ~~~~~--~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~~C 453 (454)
....+ ..+.||||+.|||++|+|||++++|||||+++|
T Consensus 234 ~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 234 LNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 75432 235799999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=4.3e-48 Score=375.25 Aligned_cols=261 Identities=27% Similarity=0.418 Sum_probs=214.4
Q ss_pred EEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCCc
Q 012892 113 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTC 192 (454)
Q Consensus 113 Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~c 192 (454)
|+++|+||||||++.|++||||+++||+|+.|.. |..+..+.|+|++|+|++..+ .|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~-~~~~~~~~y~~~~Sst~~~~~----------------------~~ 57 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPA-AQQGGHKLYDPSKSSTAKLLP----------------------GA 57 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCc-hhhccCCcCCCccCccceecC----------------------Cc
Confidence 7899999999999999999999999999999964 665556789999999988753 26
Q ss_pred eeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC-CC--CCcceeeecCCCCCccce---------ehhhhc
Q 012892 193 LYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISLVS---------QTATKY 260 (454)
Q Consensus 193 ~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~-~~--~~~~GilGLg~~~~sl~~---------q~~~~~ 260 (454)
.|.+.|++|+.+.|.+++|+|+|++ .+++++.|||++...+ .+ ...+||||||+...+... ++..+.
T Consensus 58 ~~~i~Y~~G~~~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 58 TWSISYGDGSSASGIVYTDTVSIGG-VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEECC-EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 8999999998889999999999998 6899999999998765 22 368999999998765433 222211
Q ss_pred -CCcEEEecCCCCCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEEcccc
Q 012892 261 -KKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGT 335 (454)
Q Consensus 261 -~~~FS~~L~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDSGT 335 (454)
++.||+||.+ ...|+|+|||+|+ +++.|+|+..+ ..+|.|++++|+|+++....... ..+||||||
T Consensus 137 ~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~----~~~iiDSGT 207 (278)
T cd06097 137 DAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSG----FSAIADTGT 207 (278)
T ss_pred cCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCC----ceEEeecCC
Confidence 4799999986 2479999999984 79999999863 57899999999999985432221 469999999
Q ss_pred cCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCCeEEEEE
Q 012892 336 VITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAF 415 (454)
Q Consensus 336 ~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~C~~~ 415 (454)
+++++|++++++|.+++.+.. +... ..+|.++|... +|+|+|+|
T Consensus 208 s~~~lP~~~~~~l~~~l~g~~--~~~~------~~~~~~~C~~~--~P~i~f~~-------------------------- 251 (278)
T cd06097 208 TLILLPDAIVEAYYSQVPGAY--YDSE------YGGWVFPCDTT--LPDLSFAV-------------------------- 251 (278)
T ss_pred chhcCCHHHHHHHHHhCcCCc--ccCC------CCEEEEECCCC--CCCEEEEE--------------------------
Confidence 999999999999999884321 1111 12466677643 89999999
Q ss_pred EeCCCCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 416 AGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 416 ~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.2e-46 Score=368.26 Aligned_cols=269 Identities=22% Similarity=0.401 Sum_probs=221.5
Q ss_pred cEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 012892 112 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 191 (454)
Q Consensus 112 ~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~ 191 (454)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 59999999999999999999999999997
Q ss_pred ceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCCCCcceeeecCCCCC-----------ccceehhhhc
Q 012892 192 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPI-----------SLVSQTATKY 260 (454)
Q Consensus 192 c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~~~~~GilGLg~~~~-----------sl~~q~~~~~ 260 (454)
.|++.|++|+.+.|.+++|+|+|++ ..++++.|||+++.. ..+||||||+.+. +++.|+..+.
T Consensus 31 -~~~~~Y~~g~~~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 31 -DFSISYGDGTSASGTWGTDTVSIGG-ATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred -eeEEEeccCCcEEEEEEEEEEEECC-eEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 1577899987899999999999998 588999999999853 4799999999886 5777776542
Q ss_pred ---CCcEEEecCCCCCCCceEEeccCCC----CCeeeEecccCCC--CCccEEEEEeEEEECcEEeeeccccccCCCEEE
Q 012892 261 ---KKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISG--GSSFYGLEMIGISVGGQKLSIAASVFTTAGTII 331 (454)
Q Consensus 261 ---~~~FS~~L~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~--~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ii 331 (454)
++.||+||.+.....|.|+|||+|+ +++.|+|+..++. ...+|.|++++|+|+++.+..+.. .....+||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~-~~~~~~ii 183 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL-SKNLPALL 183 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc-CCCccEEE
Confidence 5889999998655689999999874 6899999997542 237899999999999988653211 11257999
Q ss_pred cccccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeC----
Q 012892 332 DSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASN---- 407 (454)
Q Consensus 332 DSGT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~---- 407 (454)
||||++++||++++++|.+++.+.... . .......|+ .... |+|+|+| +|+++.||+++|+++..
T Consensus 184 DSGt~~~~lP~~~~~~l~~~~~~~~~~---~-~~~~~~~C~-----~~~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~ 252 (295)
T cd05474 184 DSGTTLTYLPSDIVDAIAKQLGATYDS---D-EGLYVVDCD-----AKDD-GSLTFNF-GGATISVPLSDLVLPASTDDG 252 (295)
T ss_pred CCCCccEeCCHHHHHHHHHHhCCEEcC---C-CcEEEEeCC-----CCCC-CEEEEEE-CCeEEEEEHHHhEeccccCCC
Confidence 999999999999999999999876321 1 122233454 3344 9999999 67999999999998864
Q ss_pred CCeEEE-EEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeC
Q 012892 408 ISQVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 451 (454)
Q Consensus 408 ~~~~C~-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~ 451 (454)
.+..|+ ++.+.+. +.+|||++|||++|++||.+++|||||++
T Consensus 253 ~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 253 GDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 367896 8887632 57999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.8e-46 Score=368.96 Aligned_cols=295 Identities=27% Similarity=0.466 Sum_probs=242.4
Q ss_pred cEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 012892 112 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 191 (454)
Q Consensus 112 ~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~ 191 (454)
+|+++|.||||+|++.|++||||+.+||+++.|...|.......|++++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 599999999999999999999999999999999652122234899999999998874
Q ss_pred ceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCC---CCCcceeeecCCCC-------Cccceehhhhc-
Q 012892 192 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL---FGGAAGLMGLGRDP-------ISLVSQTATKY- 260 (454)
Q Consensus 192 c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~---~~~~~GilGLg~~~-------~sl~~q~~~~~- 260 (454)
+.+.+.|++|+ ++|.+++|+|+|++ ..++++.||++....+. ....+||||||+.. .+++.|+..+.
T Consensus 58 ~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~ 135 (317)
T PF00026_consen 58 KPFSISYGDGS-VSGNLVSDTVSIGG-LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGL 135 (317)
T ss_dssp EEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTS
T ss_pred eeeeeeccCcc-cccccccceEeeee-ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcc
Confidence 58999999998 99999999999998 68889999999996542 34789999999753 34555665542
Q ss_pred --CCcEEEecCCCCCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEEccc
Q 012892 261 --KKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSG 334 (454)
Q Consensus 261 --~~~FS~~L~~~~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDSG 334 (454)
++.||++|.+.....|.|+|||+|+ +++.|+|+.. ..+|.|.+++|+++++....... ..++||||
T Consensus 136 i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~----~~~~~Dtg 207 (317)
T PF00026_consen 136 ISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSG----QQAILDTG 207 (317)
T ss_dssp SSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEE----EEEEEETT
T ss_pred ccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccc----eeeecccc
Confidence 6889999998765679999999874 6899999995 78899999999999993322221 23999999
Q ss_pred ccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCC--eEE
Q 012892 335 TVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNIS--QVC 412 (454)
Q Consensus 335 T~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~--~~C 412 (454)
|++++||++++++|.+++.+.... ..|.++|.....+|.++|+| ++.++.|++++|+.+.... ..|
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C 275 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYC 275 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEE
T ss_pred cccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhccccccccccee
Confidence 999999999999999999876322 24667777777799999999 6899999999999986433 489
Q ss_pred E-EEEeC--CCCCCceeechhhhceeEEEEECCCCEEEEEeC
Q 012892 413 L-AFAGN--SDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 451 (454)
Q Consensus 413 ~-~~~~~--~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~ 451 (454)
+ +|... ......+|||.+|||++|++||.+++|||||+|
T Consensus 276 ~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 276 YLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 8 66652 234568999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.2e-44 Score=348.40 Aligned_cols=264 Identities=33% Similarity=0.624 Sum_probs=219.2
Q ss_pred EEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCC--CCCCCCCccceecCCCccccccccCCCCCCCCCCC
Q 012892 113 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPK--FDPTVSQSYSNVSCSSTICTSLQSATGNSPACASS 190 (454)
Q Consensus 113 Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~--f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~ 190 (454)
|+++|.||||+|++.|++||||+++||+|..|.. |..+.... |++..|+++.. .
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~-----------------------~ 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKD-----------------------T 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeec-----------------------C
Confidence 7899999999999999999999999999999954 54443333 67777666544 2
Q ss_pred CceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCC--CCCCcceeeecCCCC------Cccceehhhhc--
Q 012892 191 TCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG--LFGGAAGLMGLGRDP------ISLVSQTATKY-- 260 (454)
Q Consensus 191 ~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~--~~~~~~GilGLg~~~------~sl~~q~~~~~-- 260 (454)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .....+||||||+.. .++++|+..+.
T Consensus 57 ~~~~~~~Y~~g~-~~g~~~~D~v~~~~-~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 57 GCTFSITYGDGS-VTGGLGTDTVTIGG-LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred CCEEEEEECCCe-EEEEEEEeEEEECC-EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 479999999985 88999999999998 4789999999999875 233789999999998 77888888753
Q ss_pred -CCcEEEecCCC--CCCCceEEeccCCC----CCeeeEecccCCCCCccEEEEEeEEEECcEEeeeccccccCCCEEEcc
Q 012892 261 -KKLFSYCLPSS--ASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDS 333 (454)
Q Consensus 261 -~~~FS~~L~~~--~~~~G~l~fGg~d~----~~~~~~pl~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDS 333 (454)
++.||+||.+. ....|.|+|||+|+ +++.|+|++.+ ...+|.|.+++|+|++........ ...++|||
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~---~~~~iiDs 209 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSG---GGGAIVDS 209 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCC---CcEEEEec
Confidence 69999999986 34589999999884 79999999974 367899999999999975111111 15699999
Q ss_pred cccCccCCHhHHHHHHHHHHHhhhcCCCCCCCccccccccccCCcccccCeEEEEEcCCcEEEEcCCCcEEEeCCCeEEE
Q 012892 334 GTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCL 413 (454)
Q Consensus 334 GT~~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~C~ 413 (454)
||++++||++++++|.+++.+.... ...|+...|.....+|+|+|+|
T Consensus 210 Gt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f------------------------ 256 (283)
T cd05471 210 GTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF------------------------ 256 (283)
T ss_pred CCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE------------------------
Confidence 9999999999999999999887432 2335666666667899999999
Q ss_pred EEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEe
Q 012892 414 AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 414 ~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ----------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=6.2e-33 Score=247.09 Aligned_cols=159 Identities=51% Similarity=0.942 Sum_probs=130.1
Q ss_pred EEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCCc
Q 012892 113 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTC 192 (454)
Q Consensus 113 Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~c 192 (454)
|+++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|.++.|...... .....|.++.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 89999999999999999999999999998 22899999999999999999999977542 00112235789
Q ss_pred eeeeEeCCCCeEEEeEEEEEEEeCCC----ccccceeeeeeecCCCCCCCcceeeecCCCCCccceehhhhcCCcEEEec
Q 012892 193 LYGIQYGDSSFSIGFFGKETLTLTPR----DVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCL 268 (454)
Q Consensus 193 ~~~~~Ygdgs~~~G~~~~Dtv~~~~~----~~~~~~~FG~~~~~~~~~~~~~GilGLg~~~~sl~~q~~~~~~~~FS~~L 268 (454)
.|.+.|++++.+.|.+++|+|+++.. ..++++.|||++...+.+...+||||||++++||++|+.....++|||||
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL 149 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCL 149 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEEC
Confidence 99999999999999999999999864 35789999999999987789999999999999999999777678999999
Q ss_pred CC-CCCCCceEEecc
Q 012892 269 PS-SASSTGHLTFGP 282 (454)
Q Consensus 269 ~~-~~~~~G~l~fGg 282 (454)
++ .....|.|+||+
T Consensus 150 ~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PSSSPSSSGFLSFGD 164 (164)
T ss_dssp -S-SSSSEEEEEECS
T ss_pred CCCCCCCCEEEEeCc
Confidence 99 445689999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=4.1e-28 Score=215.79 Aligned_cols=149 Identities=40% Similarity=0.706 Sum_probs=121.2
Q ss_pred cEEEEEeEEEECcEEeeeccccc----cCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCC--C-CCCCccccccccc
Q 012892 302 FYGLEMIGISVGGQKLSIAASVF----TTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYP--T-APALSLLDTCYDF 374 (454)
Q Consensus 302 ~y~v~l~~i~vg~~~~~~~~~~~----~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~--~-~~~~~~~~~Cy~~ 374 (454)
+|+|+|++|+||++++.+++..| ..+++||||||++|+||+++|++|++++.+++.... + ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999999998877 348999999999999999999999999999987643 1 3445778899999
Q ss_pred cC----CcccccCeEEEEEcCCcEEEEcCCCcEEEeCCCeEEEEEEeC-CCCCCceeechhhhceeEEEEECCCCEEEEE
Q 012892 375 SK----YSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGN-SDPTDVSIFGNTQQHTLEVVYDVAGGKVGFA 449 (454)
Q Consensus 375 ~~----~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~C~~~~~~-~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa 449 (454)
+. .....+|+|+|||.||++++|++++|+++...+.+|++|.+. .+..+.+|||+.+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 87 355789999999998999999999999998888999999987 2345689999999999999999999999999
Q ss_pred e
Q 012892 450 A 450 (454)
Q Consensus 450 ~ 450 (454)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 6
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=2.9e-23 Score=172.29 Aligned_cols=105 Identities=29% Similarity=0.593 Sum_probs=90.7
Q ss_pred EEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCC-CCCCCCccceecCCCccccccccCCCCCCCCCCCCce
Q 012892 115 VTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKF-DPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCL 193 (454)
Q Consensus 115 ~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f-~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~c~ 193 (454)
++|.||||||++.|++||||+++||+|+.|.. |..+..+.| +|++|++++... |.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~-~~~~~~~~~~~~~~sst~~~~~-----------------------~~ 56 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQS-LAIYSHSSYDDPSASSTYSDNG-----------------------CT 56 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCC-cccccccccCCcCCCCCCCCCC-----------------------cE
Confidence 47999999999999999999999999999953 554444667 999999988753 69
Q ss_pred eeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCC---CCcceeeec
Q 012892 194 YGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLF---GGAAGLMGL 245 (454)
Q Consensus 194 ~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~---~~~~GilGL 245 (454)
|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+.+ ...+|||||
T Consensus 57 ~~~~Y~~g~-~~g~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 57 FSITYGTGS-LSGGLSTDTVSIGD-IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEeCCCe-EEEEEEEEEEEECC-EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999996 77999999999998 589999999999987743 368999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.90 E-value=4.7e-05 Score=60.75 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=66.2
Q ss_pred cEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCC
Q 012892 112 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 191 (454)
Q Consensus 112 ~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~ 191 (454)
.|++++.|+ .+++.+++|||++.+|+..+...+ +. . + ... .
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~-l~-----~--~-----~~~------------------------~ 42 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAER-LG-----L--P-----LTL------------------------G 42 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHH-cC-----C--C-----ccC------------------------C
Confidence 589999999 799999999999999997642211 21 0 0 000 0
Q ss_pred ceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCCCCcceeeecCC
Q 012892 192 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGR 247 (454)
Q Consensus 192 c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~~~~~GilGLg~ 247 (454)
....+...+|.........+.+++++ ..++++.+........ ..+||||+..
T Consensus 43 ~~~~~~~~~G~~~~~~~~~~~i~ig~-~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 43 GKVTVQTANGRVRAARVRLDSLQIGG-ITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred CcEEEEecCCCccceEEEcceEEECC-cEEeccEEEEeCCccc---CCceEeChHH
Confidence 14566777777666666789999998 5788888877766543 5899999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.51 E-value=0.015 Score=48.88 Aligned_cols=96 Identities=11% Similarity=0.154 Sum_probs=63.0
Q ss_pred CcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCC
Q 012892 109 GAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACA 188 (454)
Q Consensus 109 ~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~ 188 (454)
.+|.|++++.|. .+++.+++|||++.+-+..+--.. . ..++..- .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~-L------gl~~~~~-~------------------------- 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQR-L------GLDLNRL-G------------------------- 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHH-c------CCCcccC-C-------------------------
Confidence 368999999998 689999999999999875432111 0 0111110 0
Q ss_pred CCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCCCCcceeeecCC
Q 012892 189 SSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGR 247 (454)
Q Consensus 189 ~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~~~~~GilGLg~ 247 (454)
-...+.=++|......+.-|.+++|+ ..+.|+++.+...... .+|+||+.+
T Consensus 53 ---~~~~~~ta~G~~~~~~~~l~~l~iG~-~~~~nv~~~v~~~~~~----~~~LLGm~f 103 (121)
T TIGR02281 53 ---YTVTVSTANGQIKAARVTLDRVAIGG-IVVNDVDAMVAEGGAL----SESLLGMSF 103 (121)
T ss_pred ---ceEEEEeCCCcEEEEEEEeCEEEECC-EEEeCcEEEEeCCCcC----CceEcCHHH
Confidence 02233334565444556889999998 6888999877654321 479999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.20 E-value=0.036 Score=43.22 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=53.8
Q ss_pred EEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCCCCcee
Q 012892 115 VTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLY 194 (454)
Q Consensus 115 ~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~~~c~~ 194 (454)
+++.|+ .+++.+++|||++.+.+.-+-..+ . ...+.... ...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~-l------~~~~~~~~-----------------------------~~~ 42 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKK-L------GLKPRPKS-----------------------------VPI 42 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHH-c------CCCCcCCc-----------------------------eeE
Confidence 356777 689999999999988775443211 0 01111100 012
Q ss_pred eeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCCCCcceeeecC
Q 012892 195 GIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLG 246 (454)
Q Consensus 195 ~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~~~~~GilGLg 246 (454)
.+.-.+|.........+.+++++ ..+.++.|-.... ....+||||+-
T Consensus 43 ~~~~~~g~~~~~~~~~~~i~ig~-~~~~~~~~~v~~~----~~~~~~iLG~d 89 (90)
T PF13650_consen 43 SVSGAGGSVTVYRGRVDSITIGG-ITLKNVPFLVVDL----GDPIDGILGMD 89 (90)
T ss_pred EEEeCCCCEEEEEEEEEEEEECC-EEEEeEEEEEECC----CCCCEEEeCCc
Confidence 33334454445556677899998 5777888766662 22478999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.48 E-value=0.81 Score=38.42 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=56.9
Q ss_pred EEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHHHHHHHHhhhcCC-CCCCCccccccccccCCcccccCeEEEE
Q 012892 310 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYP-TAPALSLLDTCYDFSKYSTVTLPQISLF 388 (454)
Q Consensus 310 i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~Cy~~~~~~~~~~P~i~~~ 388 (454)
++|+|..+. ++||||.+.+.++++..+++--...... .+. ...+.... .+ ........++
T Consensus 21 ~~Ing~~~~----------~LvDTGAs~s~Is~~~a~~lgl~~~~~~-~~~~~~~g~g~~-~~-------~g~~~~~~l~ 81 (124)
T cd05479 21 VEINGVPVK----------AFVDSGAQMTIMSKACAEKCGLMRLIDK-RFQGIAKGVGTQ-KI-------LGRIHLAQVK 81 (124)
T ss_pred EEECCEEEE----------EEEeCCCceEEeCHHHHHHcCCccccCc-ceEEEEecCCCc-EE-------EeEEEEEEEE
Confidence 566776542 9999999999999988876432211000 000 00000000 00 0112344555
Q ss_pred EcCCcEEEEcCCCcEEEeCCCeEEEEEEeCCCCCCceeechhhhceeEEEEECCCCEEEE
Q 012892 389 FSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGF 448 (454)
Q Consensus 389 f~gg~~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigf 448 (454)
+ ++..+.+ + +.+.+. .....|||..||+.+-.+.|.++++|.+
T Consensus 82 i-~~~~~~~---~-----------~~Vl~~--~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 82 I-GNLFLPC---S-----------FTVLED--DDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred E-CCEEeee---E-----------EEEECC--CCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 5 4443221 1 112222 1335799999999999999999998854
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.07 E-value=1.3 Score=37.19 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=56.9
Q ss_pred cccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCCC
Q 012892 110 AGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACAS 189 (454)
Q Consensus 110 ~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~~ 189 (454)
...+++++.|+ .+++.+++|||++.+++.-+-+.+ +.-. +....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~-lgl~------~~~~~--------------------------- 57 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEK-CGLM------RLIDK--------------------------- 57 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHH-cCCc------cccCc---------------------------
Confidence 45688999999 789999999999999885442211 2110 00000
Q ss_pred CCceee-eEeCC-CCeEEEeEEEEEEEeCCCccccceeeeeeecCCCCCCCcceeeecCC
Q 012892 190 STCLYG-IQYGD-SSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGR 247 (454)
Q Consensus 190 ~~c~~~-~~Ygd-gs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~~~~~~~~~~~GilGLg~ 247 (454)
.+. ...+. +....|..-.+.+.+++. ..+ ..|.+.... ..|+|||+-+
T Consensus 58 ---~~~~~~~g~g~~~~~g~~~~~~l~i~~~-~~~-~~~~Vl~~~-----~~d~ILG~d~ 107 (124)
T cd05479 58 ---RFQGIAKGVGTQKILGRIHLAQVKIGNL-FLP-CSFTVLEDD-----DVDFLIGLDM 107 (124)
T ss_pred ---ceEEEEecCCCcEEEeEEEEEEEEECCE-Eee-eEEEEECCC-----CcCEEecHHH
Confidence 111 12332 234567777888999984 543 666555332 4799999754
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.28 E-value=0.62 Score=39.82 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=25.7
Q ss_pred ceeechhhhceeEEEEECCCCEEEEEeC
Q 012892 424 VSIFGNTQQHTLEVVYDVAGGKVGFAAG 451 (454)
Q Consensus 424 ~~IlG~~fl~~~~vvfD~~~~rigfa~~ 451 (454)
..|||..+|+.+...-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999999753
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.07 E-value=0.37 Score=37.97 Aligned_cols=30 Identities=30% Similarity=0.301 Sum_probs=26.0
Q ss_pred EEEEEEeCCCCceEEEEEECCCceeeEeCCCc
Q 012892 113 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPC 144 (454)
Q Consensus 113 Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C 144 (454)
|++++.|+ .+++.+++||||+.+++.-+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 46889999 7999999999999999976544
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=90.02 E-value=0.7 Score=41.84 Aligned_cols=83 Identities=10% Similarity=0.050 Sum_probs=59.2
Q ss_pred CcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccccccCCCCCCCCC
Q 012892 109 GAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACA 188 (454)
Q Consensus 109 ~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~~~~~~~~c~ 188 (454)
.+|.|.++..|- .|++..++|||-+.+-+.-+.-.. -.||.++..
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-------lGid~~~l~-------------------------- 146 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-------LGIDLNSLD-------------------------- 146 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-------hCCCccccC--------------------------
Confidence 578999999998 899999999999998886553321 234443321
Q ss_pred CCCceeeeEeCCCCeEEEeEEEEEEEeCCCccccceeeeeee
Q 012892 189 SSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQ 230 (454)
Q Consensus 189 ~~~c~~~~~Ygdgs~~~G~~~~Dtv~~~~~~~~~~~~FG~~~ 230 (454)
-++.+.-++|......+-.|.|.||+ ..++++.=-++.
T Consensus 147 ---y~~~v~TANG~~~AA~V~Ld~v~IG~-I~~~nV~A~V~~ 184 (215)
T COG3577 147 ---YTITVSTANGRARAAPVTLDRVQIGG-IRVKNVDAMVAE 184 (215)
T ss_pred ---CceEEEccCCccccceEEeeeEEEcc-EEEcCchhheec
Confidence 25566667887555667899999998 677766554443
No 35
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=88.05 E-value=0.98 Score=36.91 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.9
Q ss_pred CceeechhhhceeEEEEECCCCEE
Q 012892 423 DVSIFGNTQQHTLEVVYDVAGGKV 446 (454)
Q Consensus 423 ~~~IlG~~fl~~~~vvfD~~~~ri 446 (454)
+..+||..||+.+-++.|..++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999988753
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.25 E-value=1.3 Score=33.32 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.4
Q ss_pred CcccEEEEEEeCCCCceEEEEEECCCceeeEeCCCc
Q 012892 109 GAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPC 144 (454)
Q Consensus 109 ~~~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C 144 (454)
..+.+++++.|| .+.+.+++|||++...+..+-+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 457899999999 6999999999999998876644
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=84.44 E-value=1.9 Score=36.10 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=28.6
Q ss_pred CccEEEEEeEEEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 300 SSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 300 ~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
.++|+++ +.|+|+.+. ++||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 5667665 678887532 99999999999999988665
No 38
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=82.38 E-value=25 Score=35.07 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=20.2
Q ss_pred EEEEEeCCCC----ceE-EEEEECCCceeeEeCC
Q 012892 114 IVTVGIGTPK----KDL-SLIFDTGSDLTWTQCE 142 (454)
Q Consensus 114 ~~~i~iGtP~----q~~-~li~DTGS~~~Wv~~~ 142 (454)
++.|.|=.|. |.+ ++++||||.-+-|..+
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 3666665543 555 8999999998777554
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=80.00 E-value=2 Score=33.09 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=23.7
Q ss_pred EEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 310 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 310 i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
++|+|+.+. ++||||.+.+.+.+++++++
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 567776542 99999999999999888776
No 40
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=79.49 E-value=6.3 Score=34.56 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.2
Q ss_pred EEEcccccCccCCHhHHHHHH
Q 012892 329 TIIDSGTVITRLPPDAYTPLR 349 (454)
Q Consensus 329 ~iiDSGT~~~~lp~~~~~~l~ 349 (454)
++||||++..+...+..+.|.
T Consensus 48 vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 48 VLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEeCCCccceeehhhHHhhC
Confidence 999999999999988876654
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=78.84 E-value=2.9 Score=32.73 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=25.3
Q ss_pred EEEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 309 GISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 309 ~i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
.+.|+|+.+. +.+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3678888763 89999999999999988765
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=78.80 E-value=3.9 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=23.4
Q ss_pred EEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 310 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 310 i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
+.|+++.+. ++||||++.++++.+..+.+
T Consensus 7 v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 677776542 99999999999999877665
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=78.68 E-value=2.7 Score=33.41 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.3
Q ss_pred EEEEEeCCCCceEEEEEECCCceeeEeCCC
Q 012892 114 IVTVGIGTPKKDLSLIFDTGSDLTWTQCEP 143 (454)
Q Consensus 114 ~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~ 143 (454)
+++|.|. .+++.+++||||+.+-++.+.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4677888 689999999999999887653
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=75.46 E-value=4.6 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=24.6
Q ss_pred EEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 310 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 310 i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
+.|++..+. +++|||.+..+++++..+.+
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 677876653 99999999999999988776
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=69.71 E-value=5.8 Score=31.07 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.0
Q ss_pred EEEeCCCCceEEEEEECCCceeeEeCC
Q 012892 116 TVGIGTPKKDLSLIFDTGSDLTWTQCE 142 (454)
Q Consensus 116 ~i~iGtP~q~~~li~DTGS~~~Wv~~~ 142 (454)
.+.|+ .|.+.+++|||++++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 79999999999999999654
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.17 E-value=7.4 Score=30.15 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=21.0
Q ss_pred EEEeCCCCceEEEEEECCCceeeEeCCC
Q 012892 116 TVGIGTPKKDLSLIFDTGSDLTWTQCEP 143 (454)
Q Consensus 116 ~i~iGtP~q~~~li~DTGS~~~Wv~~~~ 143 (454)
.+.|. .+++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 35565 689999999999999996553
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=60.94 E-value=9.1 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.9
Q ss_pred EEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 310 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 310 i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
+.|+|+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 567777643 99999999999999888775
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=55.54 E-value=8.3 Score=30.53 Aligned_cols=27 Identities=15% Similarity=0.565 Sum_probs=21.0
Q ss_pred EEEECcEEeeeccccccCCCEEEcccccCccCCHhHH
Q 012892 309 GISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAY 345 (454)
Q Consensus 309 ~i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~ 345 (454)
.|.++++.+. ++||||...+.++++.+
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE----------EEEecCCCcceeccccc
Confidence 3667777643 99999999999997543
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=48.68 E-value=39 Score=30.88 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCccEEEEEeEEEECcEEeeeccccccCCCEEEcccccCccCCHhHHHH
Q 012892 299 GSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTP 347 (454)
Q Consensus 299 ~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~ 347 (454)
.+++|.++ ..|+|+.+. .++|||.+.+.++++..+.
T Consensus 102 ~~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 102 RDGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHH
Confidence 36777655 789999875 8999999999999876644
No 50
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=41.38 E-value=1.2e+02 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=18.4
Q ss_pred EEEEeCCCC----ceEEEEEECCCceee
Q 012892 115 VTVGIGTPK----KDLSLIFDTGSDLTW 138 (454)
Q Consensus 115 ~~i~iGtP~----q~~~li~DTGS~~~W 138 (454)
++|.|..|. -++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 577888772 368999999998653
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=40.52 E-value=28 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.7
Q ss_pred EEEcccccCccCCHhHHHHHH
Q 012892 329 TIIDSGTVITRLPPDAYTPLR 349 (454)
Q Consensus 329 ~iiDSGT~~~~lp~~~~~~l~ 349 (454)
+.+|||.+...+|...|+.+.
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 889999999999998887664
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=40.26 E-value=37 Score=29.91 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=23.2
Q ss_pred EEEEEeCCCCceEEEEEECCCceeeEeCC
Q 012892 114 IVTVGIGTPKKDLSLIFDTGSDLTWTQCE 142 (454)
Q Consensus 114 ~~~i~iGtP~q~~~li~DTGS~~~Wv~~~ 142 (454)
...+.++.-..+++++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 45566666689999999999999888654
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.35 E-value=33 Score=28.79 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=23.0
Q ss_pred EEECcEEeeeccccccCCCEEEcccccCccCCHhHHHHH
Q 012892 310 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 348 (454)
Q Consensus 310 i~vg~~~~~~~~~~~~~~~~iiDSGT~~~~lp~~~~~~l 348 (454)
++++|+.+. +.||||+..+.++.+..+++
T Consensus 29 ~~ing~~vk----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE----------EEEeCCCCccccCHHHHHHc
Confidence 778888763 99999999999999988773
No 54
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=22 Score=29.61 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.1
Q ss_pred CCceeechhhhceeEEEEECCCCEE
Q 012892 422 TDVSIFGNTQQHTLEVVYDVAGGKV 446 (454)
Q Consensus 422 ~~~~IlG~~fl~~~~vvfD~~~~ri 446 (454)
....+||-..|+..-.++|...+++
T Consensus 93 ~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 93 LPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred CcccchhhhhhhhccEEEcCCcceE
Confidence 3345999999999999999876665
No 55
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=32.26 E-value=1.3e+02 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=19.1
Q ss_pred CceeechhhhceeEEEEECCCCEEEEEe
Q 012892 423 DVSIFGNTQQHTLEVVYDVAGGKVGFAA 450 (454)
Q Consensus 423 ~~~IlG~~fl~~~~vvfD~~~~rigfa~ 450 (454)
-..|||+.|+|.|+=-...+ ++|-|..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 45899999999876555554 4676653
No 56
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=29.92 E-value=3.9e+02 Score=26.78 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=29.5
Q ss_pred EEE-EEEeCCCCCCceeechhhhceeEEEEECCCCEEEEEeC
Q 012892 411 VCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 451 (454)
Q Consensus 411 ~C~-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rigfa~~ 451 (454)
.|- .++.. ......||.-.||.+--.-|++++++-|+..
T Consensus 307 ~c~ftV~d~--~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDR--RDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecC--CCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 366 44433 2334689999999999999999999888654
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=29.39 E-value=88 Score=26.26 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=24.5
Q ss_pred ccEEEEEEeCCCCceEEEEEECCCceeeEeCCCcccccc
Q 012892 111 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCY 149 (454)
Q Consensus 111 ~~Y~~~i~iGtP~q~~~li~DTGS~~~Wv~~~~C~~~C~ 149 (454)
...++++.|+ .+++.+.+|||.-.+-+.-+ |.+.|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~-~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKS-CAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHH-HHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHH-HHHHcC
Confidence 4578999999 79999999999988877543 433353
No 58
>PF13033 DUF3894: Protein of unknown function (DUF3894)
Probab=20.27 E-value=1.2e+02 Score=20.64 Aligned_cols=16 Identities=56% Similarity=1.067 Sum_probs=12.5
Q ss_pred chhhhHHHHHHHHHHH
Q 012892 2 ICSYLIIFNCMYLYPL 17 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (454)
||||+.-+-||.++-|
T Consensus 6 ICsy~Vaiv~MALLNl 21 (54)
T PF13033_consen 6 ICSYLVAIVCMALLNL 21 (54)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999998888776554
No 59
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=20.06 E-value=83 Score=30.10 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=12.4
Q ss_pred EEEcccccCccCC
Q 012892 329 TIIDSGTVITRLP 341 (454)
Q Consensus 329 ~iiDSGT~~~~lp 341 (454)
++||||++.+++|
T Consensus 18 v~~DTgS~~~wv~ 30 (295)
T cd05474 18 VLLDTGSSDLWVP 30 (295)
T ss_pred EEEeCCCCcceee
Confidence 9999999999999
Done!