Query 012893
Match_columns 454
No_of_seqs 126 out of 1485
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.3E-64 7.2E-69 496.5 45.1 431 9-452 6-449 (451)
2 PLN02173 UDP-glucosyl transfer 100.0 7.8E-64 1.7E-68 491.6 41.4 420 9-452 4-447 (449)
3 PLN02555 limonoid glucosyltran 100.0 1.8E-63 3.8E-68 493.0 42.4 432 10-453 7-469 (480)
4 PLN02210 UDP-glucosyl transfer 100.0 4.5E-63 9.8E-68 490.4 43.0 430 7-452 5-454 (456)
5 PLN02562 UDP-glycosyltransfera 100.0 6.8E-63 1.5E-67 488.7 42.9 429 6-452 2-448 (448)
6 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.3E-63 1.6E-67 490.3 41.9 439 6-453 5-471 (477)
7 PLN02992 coniferyl-alcohol glu 100.0 4.8E-62 1E-66 481.5 42.4 429 7-453 2-469 (481)
8 PLN02448 UDP-glycosyltransfera 100.0 5.8E-62 1.3E-66 485.7 41.4 431 5-453 5-457 (459)
9 PLN02534 UDP-glycosyltransfera 100.0 6.1E-61 1.3E-65 475.5 42.6 437 7-453 5-486 (491)
10 PLN02152 indole-3-acetate beta 100.0 3.7E-61 8E-66 473.4 40.1 422 10-451 3-454 (455)
11 PLN02764 glycosyltransferase f 100.0 7.2E-61 1.6E-65 469.0 41.6 421 8-453 3-445 (453)
12 PLN02208 glycosyltransferase f 100.0 3.7E-61 8.1E-66 473.7 39.6 418 8-453 2-439 (442)
13 PLN00164 glucosyltransferase; 100.0 2.1E-60 4.6E-65 474.3 43.4 431 9-453 2-473 (480)
14 PLN02207 UDP-glycosyltransfera 100.0 2E-60 4.4E-65 469.1 41.6 436 9-452 2-464 (468)
15 PLN02670 transferase, transfer 100.0 3.8E-60 8.2E-65 467.7 41.0 434 6-453 2-465 (472)
16 PLN03007 UDP-glucosyltransfera 100.0 4.3E-60 9.3E-65 474.5 40.7 432 9-453 4-480 (482)
17 PLN02554 UDP-glycosyltransfera 100.0 6.3E-60 1.4E-64 472.7 40.5 429 10-453 2-478 (481)
18 PLN03015 UDP-glucosyl transfer 100.0 2.5E-59 5.5E-64 459.4 42.1 432 10-452 3-467 (470)
19 PLN02167 UDP-glycosyltransfera 100.0 1.6E-59 3.4E-64 469.1 39.7 432 9-453 2-472 (475)
20 PLN00414 glycosyltransferase f 100.0 3.5E-59 7.6E-64 460.2 40.4 415 8-453 2-440 (446)
21 PLN03004 UDP-glycosyltransfera 100.0 1.1E-58 2.4E-63 455.4 38.1 420 10-442 3-450 (451)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1E-45 2.2E-50 371.2 29.8 403 10-454 20-467 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 6.3E-43 1.4E-47 345.8 32.7 379 17-452 2-390 (392)
24 cd03784 GT1_Gtf_like This fami 100.0 9.5E-44 2.1E-48 353.1 23.9 385 11-450 1-400 (401)
25 PF00201 UDPGT: UDP-glucoronos 100.0 1.3E-45 2.9E-50 376.4 7.8 394 12-453 2-443 (500)
26 COG1819 Glycosyl transferases, 100.0 6.4E-43 1.4E-47 342.0 20.2 387 10-452 1-399 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.1E-38 4.5E-43 323.5 20.6 422 10-452 5-454 (496)
28 PRK12446 undecaprenyldiphospho 100.0 3.7E-28 7.9E-33 234.9 29.6 320 10-425 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 100.0 1.9E-26 4.2E-31 221.8 25.9 308 11-410 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.2E-25 4.7E-30 213.0 28.7 311 11-414 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 2.8E-23 6E-28 199.6 24.2 304 12-414 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.4E-19 3.1E-24 177.0 28.5 343 10-451 1-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.8E-18 6.1E-23 167.3 26.2 315 12-414 1-325 (350)
34 COG4671 Predicted glycosyl tra 99.8 5.1E-18 1.1E-22 154.7 20.1 335 7-412 6-364 (400)
35 TIGR00215 lpxB lipid-A-disacch 99.8 5.6E-18 1.2E-22 166.3 21.4 348 11-448 6-383 (385)
36 TIGR01133 murG undecaprenyldip 99.8 1.7E-16 3.7E-21 154.6 26.5 308 11-414 1-322 (348)
37 PRK13609 diacylglycerol glucos 99.7 8.2E-16 1.8E-20 151.6 20.9 134 270-414 200-339 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 1.1E-15 2.4E-20 143.3 19.6 103 273-382 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 3.1E-15 6.7E-20 147.6 23.2 168 270-450 184-374 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.6 2.5E-17 5.5E-22 142.8 0.9 137 274-414 1-145 (167)
41 PRK13608 diacylglycerol glucos 99.6 2.6E-14 5.7E-19 141.1 18.5 163 270-451 200-369 (391)
42 PLN02605 monogalactosyldiacylg 99.6 1.9E-13 4.2E-18 134.7 24.5 167 269-451 203-379 (382)
43 TIGR03492 conserved hypothetic 99.6 8.5E-13 1.8E-17 129.8 25.4 328 18-414 4-365 (396)
44 PF03033 Glyco_transf_28: Glyc 99.4 4.2E-14 9E-19 118.6 -0.7 124 13-151 1-134 (139)
45 cd03814 GT1_like_2 This family 99.3 5.4E-09 1.2E-13 101.7 32.1 128 273-414 197-333 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 2E-09 4.3E-14 109.1 28.6 139 274-427 264-415 (465)
47 cd03823 GT1_ExpE7_like This fa 99.3 1.6E-08 3.4E-13 98.2 31.3 132 272-414 190-330 (359)
48 cd04962 GT1_like_5 This family 99.2 2E-08 4.4E-13 98.5 29.6 144 273-426 197-350 (371)
49 COG3980 spsG Spore coat polysa 99.2 2E-09 4.4E-14 96.1 19.7 142 274-427 160-304 (318)
50 cd03817 GT1_UGDG_like This fam 99.2 3.6E-08 7.8E-13 96.0 29.9 147 273-429 202-360 (374)
51 cd03794 GT1_wbuB_like This fam 99.2 2.7E-08 5.8E-13 97.4 27.9 146 272-426 219-379 (394)
52 cd03816 GT1_ALG1_like This fam 99.2 3.1E-08 6.8E-13 98.8 28.6 146 271-427 230-399 (415)
53 cd03800 GT1_Sucrose_synthase T 99.2 2.3E-08 5E-13 99.0 26.9 143 273-425 220-381 (398)
54 PF04007 DUF354: Protein of un 99.1 6.4E-08 1.4E-12 92.0 25.5 299 11-411 1-308 (335)
55 PRK10307 putative glycosyl tra 99.1 2.6E-07 5.6E-12 92.3 31.3 147 273-428 229-389 (412)
56 cd03808 GT1_cap1E_like This fa 99.1 1.7E-07 3.7E-12 90.5 29.3 313 12-414 1-330 (359)
57 cd03818 GT1_ExpC_like This fam 99.1 1.2E-07 2.6E-12 94.1 28.6 93 326-427 281-381 (396)
58 TIGR03449 mycothiol_MshA UDP-N 99.1 1.6E-07 3.4E-12 93.6 28.4 93 325-426 282-382 (405)
59 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 8.2E-09 1.8E-13 101.2 18.9 133 271-414 197-338 (363)
60 PRK14089 ipid-A-disaccharide s 99.1 2E-08 4.4E-13 96.2 19.6 165 241-430 145-332 (347)
61 PRK05749 3-deoxy-D-manno-octul 99.0 2.6E-07 5.7E-12 92.6 27.9 95 327-428 303-404 (425)
62 cd03801 GT1_YqgM_like This fam 99.0 4.5E-07 9.7E-12 87.7 27.8 133 273-414 199-342 (374)
63 cd03820 GT1_amsD_like This fam 99.0 6.3E-07 1.4E-11 86.1 28.2 144 273-426 178-333 (348)
64 cd03825 GT1_wcfI_like This fam 99.0 3.2E-07 6.9E-12 89.6 25.4 92 325-425 243-343 (365)
65 cd03805 GT1_ALG2_like This fam 99.0 8.8E-07 1.9E-11 87.7 28.6 145 272-426 210-378 (392)
66 TIGR00236 wecB UDP-N-acetylglu 99.0 3E-08 6.5E-13 97.3 17.6 128 273-414 198-335 (365)
67 cd03798 GT1_wlbH_like This fam 99.0 2.1E-06 4.6E-11 83.3 30.0 133 272-414 201-345 (377)
68 cd03795 GT1_like_4 This family 98.9 6.5E-07 1.4E-11 87.1 24.6 144 273-427 191-347 (357)
69 TIGR02472 sucr_P_syn_N sucrose 98.9 6.4E-06 1.4E-10 82.9 31.6 93 325-424 316-418 (439)
70 cd03799 GT1_amsK_like This is 98.9 5.4E-06 1.2E-10 80.5 29.7 143 273-425 179-340 (355)
71 PRK01021 lpxB lipid-A-disaccha 98.8 2E-06 4.3E-11 86.7 25.3 204 227-445 371-600 (608)
72 cd03811 GT1_WabH_like This fam 98.8 3.5E-06 7.6E-11 81.0 26.6 133 272-414 188-333 (353)
73 cd03821 GT1_Bme6_like This fam 98.8 8.5E-06 1.8E-10 79.2 29.5 143 273-426 203-359 (375)
74 cd05844 GT1_like_7 Glycosyltra 98.8 1.1E-05 2.3E-10 79.1 29.6 92 325-425 244-349 (367)
75 cd03796 GT1_PIG-A_like This fa 98.8 2.6E-06 5.6E-11 84.6 25.4 130 273-414 193-334 (398)
76 cd03819 GT1_WavL_like This fam 98.8 6.5E-06 1.4E-10 80.1 27.6 148 273-429 185-348 (355)
77 cd03802 GT1_AviGT4_like This f 98.8 1.9E-06 4.1E-11 83.1 23.1 126 275-413 173-308 (335)
78 PRK09922 UDP-D-galactose:(gluc 98.8 3.4E-06 7.3E-11 82.6 24.7 160 274-452 181-357 (359)
79 KOG3349 Predicted glycosyltran 98.7 6.2E-08 1.4E-12 78.1 9.1 121 273-397 4-136 (170)
80 cd03822 GT1_ecORF704_like This 98.7 2.5E-05 5.5E-10 75.9 29.4 143 273-425 185-347 (366)
81 cd04951 GT1_WbdM_like This fam 98.7 6.5E-06 1.4E-10 80.1 23.9 131 273-414 188-327 (360)
82 TIGR03088 stp2 sugar transfera 98.7 1.2E-05 2.7E-10 79.0 25.9 144 272-425 193-351 (374)
83 PF02684 LpxB: Lipid-A-disacch 98.6 1.3E-05 2.8E-10 77.5 22.5 196 240-444 153-368 (373)
84 cd04955 GT1_like_6 This family 98.6 4E-05 8.6E-10 74.7 26.0 124 276-414 196-331 (363)
85 TIGR02468 sucrsPsyn_pln sucros 98.6 2.7E-05 5.8E-10 83.7 25.6 96 325-427 547-652 (1050)
86 cd03812 GT1_CapH_like This fam 98.6 4.4E-05 9.5E-10 74.3 25.1 132 273-414 192-332 (358)
87 TIGR02470 sucr_synth sucrose s 98.5 0.00021 4.6E-09 75.2 30.9 93 325-424 618-725 (784)
88 TIGR02149 glgA_Coryne glycogen 98.5 0.00016 3.4E-09 71.5 28.9 143 274-425 202-365 (388)
89 PLN02275 transferase, transfer 98.5 6.3E-05 1.4E-09 73.9 25.7 75 326-411 286-371 (371)
90 cd03807 GT1_WbnK_like This fam 98.5 0.00017 3.6E-09 69.8 28.4 130 273-414 193-333 (365)
91 PRK15427 colanic acid biosynth 98.5 0.00025 5.4E-09 70.6 29.3 144 273-425 222-384 (406)
92 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 5.5E-06 1.2E-10 80.9 16.9 128 271-412 200-338 (365)
93 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.0002 4.3E-09 68.8 25.2 325 12-433 50-407 (419)
94 cd04950 GT1_like_1 Glycosyltra 98.4 0.001 2.2E-08 65.5 30.8 125 274-414 206-341 (373)
95 COG5017 Uncharacterized conser 98.4 3.3E-06 7.1E-11 67.0 10.1 126 275-412 2-141 (161)
96 TIGR03087 stp1 sugar transfera 98.4 2.1E-05 4.6E-10 78.1 18.0 91 325-426 279-376 (397)
97 PRK15179 Vi polysaccharide bio 98.4 0.0007 1.5E-08 71.1 29.4 145 274-426 518-673 (694)
98 cd03809 GT1_mtfB_like This fam 98.4 3.5E-05 7.5E-10 74.9 18.6 130 274-414 196-337 (365)
99 COG0763 LpxB Lipid A disacchar 98.3 6.3E-05 1.4E-09 71.3 18.6 201 242-451 158-379 (381)
100 cd03792 GT1_Trehalose_phosphor 98.3 0.00014 3E-09 71.6 22.1 141 274-425 191-350 (372)
101 PLN02949 transferase, transfer 98.3 0.00052 1.1E-08 69.1 26.3 97 325-430 334-441 (463)
102 PRK00654 glgA glycogen synthas 98.3 0.00029 6.3E-09 71.5 24.4 135 273-412 282-427 (466)
103 PLN00142 sucrose synthase 98.3 0.0003 6.6E-09 74.1 24.3 73 346-425 668-749 (815)
104 TIGR02095 glgA glycogen/starch 98.2 0.0017 3.7E-08 66.1 28.7 133 273-412 291-436 (473)
105 cd04949 GT1_gtfA_like This fam 98.2 0.0003 6.6E-09 69.0 21.5 151 274-430 205-363 (372)
106 TIGR02918 accessory Sec system 98.2 0.00025 5.3E-09 72.2 20.8 151 273-431 319-485 (500)
107 PF02350 Epimerase_2: UDP-N-ac 98.2 3.2E-06 7E-11 81.7 6.4 131 270-413 178-318 (346)
108 cd03791 GT1_Glycogen_synthase_ 98.1 0.0017 3.7E-08 66.1 26.2 133 273-412 296-441 (476)
109 COG0381 WecB UDP-N-acetylgluco 98.1 0.00012 2.6E-09 69.7 15.8 136 271-423 203-348 (383)
110 cd03806 GT1_ALG11_like This fa 98.1 0.0008 1.7E-08 67.3 22.0 80 325-414 304-393 (419)
111 PLN02846 digalactosyldiacylgly 98.0 0.0016 3.4E-08 65.1 22.8 73 330-414 288-364 (462)
112 cd03804 GT1_wbaZ_like This fam 97.9 5.3E-05 1.1E-09 73.8 9.3 125 275-414 197-327 (351)
113 cd04946 GT1_AmsK_like This fam 97.8 0.00041 8.8E-09 69.1 14.9 94 326-425 289-390 (407)
114 PF00534 Glycos_transf_1: Glyc 97.8 0.00021 4.6E-09 61.7 11.3 146 271-425 13-171 (172)
115 COG1817 Uncharacterized protei 97.8 0.01 2.2E-07 54.7 21.7 101 21-146 10-112 (346)
116 PF13844 Glyco_transf_41: Glyc 97.7 0.0011 2.4E-08 65.6 15.0 140 271-414 283-431 (468)
117 PLN02316 synthase/transferase 97.6 0.17 3.7E-06 55.4 32.5 151 274-435 841-1015(1036)
118 PRK15484 lipopolysaccharide 1, 97.6 0.0047 1E-07 60.9 17.5 91 324-423 255-354 (380)
119 cd01635 Glycosyltransferase_GT 97.4 0.015 3.3E-07 52.0 17.5 49 325-375 160-216 (229)
120 TIGR02193 heptsyl_trn_I lipopo 97.4 0.014 3.1E-07 55.9 18.0 132 271-411 178-319 (319)
121 cd03813 GT1_like_3 This family 97.3 0.0077 1.7E-07 61.3 16.1 144 273-424 293-454 (475)
122 PRK09814 beta-1,6-galactofuran 97.3 0.0031 6.7E-08 61.0 12.4 97 325-432 206-318 (333)
123 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0013 2.8E-08 54.2 7.6 125 274-413 3-135 (135)
124 PF06258 Mito_fiss_Elm1: Mitoc 97.0 0.082 1.8E-06 50.3 18.6 121 272-394 146-281 (311)
125 PRK15490 Vi polysaccharide bio 97.0 0.49 1.1E-05 48.3 25.4 74 325-407 454-532 (578)
126 PLN02501 digalactosyldiacylgly 97.0 0.12 2.6E-06 53.8 20.3 76 327-414 602-682 (794)
127 PRK10017 colanic acid biosynth 96.9 0.24 5.2E-06 49.4 21.6 160 264-432 226-409 (426)
128 PRK10125 putative glycosyl tra 96.9 0.52 1.1E-05 46.8 24.5 99 290-407 258-365 (405)
129 PF06722 DUF1205: Protein of u 96.5 0.0031 6.7E-08 48.5 3.4 64 261-329 29-97 (97)
130 COG3660 Predicted nucleoside-d 96.4 0.67 1.5E-05 42.0 18.3 103 291-395 187-299 (329)
131 PRK14098 glycogen synthase; Pr 96.3 0.083 1.8E-06 53.9 14.1 132 274-411 308-449 (489)
132 COG3914 Spy Predicted O-linked 96.3 0.058 1.2E-06 54.0 11.9 105 270-378 427-543 (620)
133 KOG4626 O-linked N-acetylgluco 96.0 0.16 3.5E-06 51.3 13.5 150 239-395 725-889 (966)
134 PF13477 Glyco_trans_4_2: Glyc 95.9 0.066 1.4E-06 44.2 9.4 103 12-146 1-107 (139)
135 PRK10964 ADP-heptose:LPS hepto 95.9 0.83 1.8E-05 43.8 18.1 134 273-412 179-321 (322)
136 PF08660 Alg14: Oligosaccharid 95.8 0.17 3.7E-06 43.5 11.5 118 15-146 2-129 (170)
137 PHA01633 putative glycosyl tra 95.8 0.085 1.8E-06 50.7 10.5 101 324-429 199-323 (335)
138 PF13524 Glyco_trans_1_2: Glyc 95.8 0.075 1.6E-06 40.4 8.3 83 351-448 9-91 (92)
139 cd03789 GT1_LPS_heptosyltransf 95.7 1.8 4E-05 40.4 19.0 45 12-60 1-47 (279)
140 PRK10916 ADP-heptose:LPS hepto 95.5 1.4 2.9E-05 42.9 18.1 96 271-370 179-286 (348)
141 COG0859 RfaF ADP-heptose:LPS h 95.3 0.89 1.9E-05 43.9 15.9 95 272-370 175-276 (334)
142 TIGR02201 heptsyl_trn_III lipo 95.2 2.7 5.8E-05 40.7 19.1 97 271-370 180-285 (344)
143 PHA01630 putative group 1 glyc 95.1 0.61 1.3E-05 44.9 14.0 110 332-451 196-328 (331)
144 PRK10422 lipopolysaccharide co 94.8 4.3 9.4E-05 39.4 21.3 96 272-370 183-287 (352)
145 TIGR02195 heptsyl_trn_II lipop 94.6 2.3 5E-05 40.9 16.8 96 271-370 173-276 (334)
146 PRK14099 glycogen synthase; Pr 92.9 1.2 2.6E-05 45.4 11.7 135 274-414 296-448 (485)
147 TIGR02400 trehalose_OtsA alpha 92.5 1.5 3.3E-05 44.3 11.5 102 332-451 342-454 (456)
148 PLN02939 transferase, transfer 92.3 3.8 8.2E-05 44.7 14.5 133 274-412 780-930 (977)
149 PF12000 Glyco_trans_4_3: Gkyc 92.3 2.2 4.8E-05 36.6 10.6 93 38-145 1-95 (171)
150 TIGR03713 acc_sec_asp1 accesso 91.9 1.3 2.8E-05 45.5 10.3 93 326-432 409-508 (519)
151 PF13579 Glyco_trans_4_4: Glyc 90.5 0.76 1.7E-05 38.2 6.2 98 25-146 5-104 (160)
152 PF01975 SurE: Survival protei 90.4 1.4 3E-05 38.9 7.7 40 11-55 1-40 (196)
153 COG0438 RfaG Glycosyltransfera 89.4 17 0.00037 33.9 15.4 131 274-414 200-343 (381)
154 PF13439 Glyco_transf_4: Glyco 88.8 5.3 0.00012 33.6 10.3 31 20-54 11-41 (177)
155 PRK02797 4-alpha-L-fucosyltran 88.3 14 0.00031 34.7 12.9 132 275-412 147-293 (322)
156 TIGR02919 accessory Sec system 88.0 9.2 0.0002 38.4 12.5 122 273-414 284-412 (438)
157 COG1618 Predicted nucleotide k 86.2 2.8 6.2E-05 35.3 6.4 55 10-75 5-59 (179)
158 COG4370 Uncharacterized protei 85.8 1.9 4E-05 40.1 5.6 91 326-424 294-387 (412)
159 cd03788 GT1_TPS Trehalose-6-Ph 84.8 5 0.00011 40.7 8.9 103 331-451 346-459 (460)
160 PF04464 Glyphos_transf: CDP-G 84.3 3.5 7.7E-05 40.3 7.5 109 326-446 252-366 (369)
161 cd03793 GT1_Glycogen_synthase_ 83.9 4.5 9.7E-05 41.6 8.0 75 335-414 467-553 (590)
162 PF07429 Glyco_transf_56: 4-al 82.9 36 0.00079 32.7 12.9 133 274-412 185-332 (360)
163 PLN03063 alpha,alpha-trehalose 82.7 7 0.00015 42.5 9.4 98 337-452 370-476 (797)
164 PF05159 Capsule_synth: Capsul 82.6 5.4 0.00012 37.1 7.7 79 291-372 144-226 (269)
165 KOG0202 Ca2+ transporting ATPa 82.2 17 0.00037 38.8 11.4 149 273-453 572-749 (972)
166 COG4394 Uncharacterized protei 81.7 45 0.00097 31.0 12.6 114 327-451 239-368 (370)
167 PF01075 Glyco_transf_9: Glyco 81.4 3.4 7.3E-05 37.7 5.8 98 270-370 103-208 (247)
168 PRK02261 methylaspartate mutas 79.5 2.4 5.1E-05 35.0 3.6 45 8-56 1-45 (137)
169 PRK04885 ppnK inorganic polyph 78.8 4.1 8.9E-05 37.8 5.3 51 346-413 37-93 (265)
170 PRK13932 stationary phase surv 77.6 38 0.00082 31.2 11.1 43 7-55 2-44 (257)
171 KOG1250 Threonine/serine dehyd 76.4 80 0.0017 30.9 14.2 114 273-414 195-317 (457)
172 PRK02155 ppnK NAD(+)/NADH kina 75.6 5.5 0.00012 37.5 5.3 52 345-413 64-119 (291)
173 PRK02649 ppnK inorganic polyph 74.6 5.7 0.00012 37.7 5.1 52 345-413 69-124 (305)
174 PRK14077 pnk inorganic polypho 74.5 6.3 0.00014 37.0 5.3 52 345-413 65-120 (287)
175 PRK01911 ppnK inorganic polyph 72.1 6 0.00013 37.3 4.6 52 345-413 65-120 (292)
176 PRK13933 stationary phase surv 71.5 66 0.0014 29.6 11.1 39 11-55 1-39 (253)
177 PRK01185 ppnK inorganic polyph 71.0 9.3 0.0002 35.6 5.5 52 345-413 53-105 (271)
178 PLN02929 NADH kinase 70.9 34 0.00074 32.3 9.2 64 345-413 65-137 (301)
179 PRK04539 ppnK inorganic polyph 69.6 7.7 0.00017 36.6 4.7 52 345-413 69-124 (296)
180 PRK03372 ppnK inorganic polyph 69.3 8.8 0.00019 36.4 5.1 52 345-413 73-128 (306)
181 PRK03378 ppnK inorganic polyph 68.6 9.7 0.00021 35.9 5.2 52 345-413 64-119 (292)
182 PF10093 DUF2331: Uncharacteri 68.2 1.2E+02 0.0027 29.6 13.7 84 287-373 194-293 (374)
183 PRK14075 pnk inorganic polypho 66.8 13 0.00027 34.4 5.5 52 345-413 42-94 (256)
184 COG0496 SurE Predicted acid ph 66.5 12 0.00027 34.1 5.2 39 11-55 1-39 (252)
185 cd02067 B12-binding B12 bindin 66.3 7.7 0.00017 30.9 3.5 39 12-54 1-39 (119)
186 COG0003 ArsA Predicted ATPase 65.7 46 0.001 31.8 9.1 42 10-55 1-43 (322)
187 PRK12446 undecaprenyldiphospho 65.5 22 0.00048 34.5 7.2 96 273-370 3-120 (352)
188 PRK01231 ppnK inorganic polyph 65.3 13 0.00028 35.1 5.3 52 345-413 63-118 (295)
189 PF02441 Flavoprotein: Flavopr 64.4 4.5 9.8E-05 32.9 1.9 45 11-60 1-45 (129)
190 PRK03501 ppnK inorganic polyph 64.3 12 0.00027 34.6 4.9 51 346-413 41-97 (264)
191 PRK07313 phosphopantothenoylcy 64.2 97 0.0021 26.9 11.2 134 274-412 4-179 (182)
192 cd01980 Chlide_reductase_Y Chl 63.7 45 0.00097 33.3 9.1 27 117-146 350-376 (416)
193 PF06925 MGDG_synth: Monogalac 63.0 23 0.00051 30.1 6.2 41 104-146 78-124 (169)
194 cd07038 TPP_PYR_PDC_IPDC_like 62.8 29 0.00063 29.4 6.6 27 345-371 60-92 (162)
195 COG0052 RpsB Ribosomal protein 62.2 34 0.00073 31.1 7.0 31 117-147 156-188 (252)
196 TIGR02015 BchY chlorophyllide 61.9 28 0.00061 34.8 7.3 26 117-145 355-380 (422)
197 PRK13935 stationary phase surv 61.1 87 0.0019 28.8 9.7 39 11-55 1-39 (253)
198 PRK12342 hypothetical protein; 60.5 18 0.00039 33.3 5.2 39 107-147 101-145 (254)
199 PRK13789 phosphoribosylamine-- 60.1 27 0.00059 34.9 6.9 37 8-53 2-38 (426)
200 cd07039 TPP_PYR_POX Pyrimidine 59.9 32 0.0007 29.2 6.4 27 345-371 64-96 (164)
201 PRK02231 ppnK inorganic polyph 59.2 17 0.00037 33.8 4.9 51 345-412 43-97 (272)
202 PRK14501 putative bifunctional 59.2 32 0.00069 37.2 7.7 109 330-452 346-461 (726)
203 PRK14076 pnk inorganic polypho 58.9 17 0.00037 37.9 5.3 52 345-413 349-404 (569)
204 PLN02935 Bifunctional NADH kin 58.5 18 0.00039 36.6 5.2 52 345-413 263-318 (508)
205 PRK03708 ppnK inorganic polyph 58.4 18 0.0004 33.8 5.0 52 345-413 58-112 (277)
206 PRK05973 replicative DNA helic 57.9 23 0.0005 32.2 5.4 42 12-57 66-107 (237)
207 TIGR02195 heptsyl_trn_II lipop 57.4 35 0.00075 32.7 7.0 100 10-146 174-278 (334)
208 PLN02470 acetolactate synthase 57.0 23 0.0005 37.2 6.0 92 278-371 2-109 (585)
209 PF02951 GSH-S_N: Prokaryotic 56.4 17 0.00036 29.2 3.7 39 11-53 1-42 (119)
210 cd07037 TPP_PYR_MenD Pyrimidin 55.9 30 0.00064 29.4 5.5 26 346-371 62-93 (162)
211 PF02310 B12-binding: B12 bind 55.9 19 0.00041 28.5 4.1 38 11-52 1-38 (121)
212 PF10649 DUF2478: Protein of u 55.1 1.3E+02 0.0028 25.5 11.0 120 15-147 3-132 (159)
213 TIGR00715 precor6x_red precorr 54.9 67 0.0014 29.6 8.0 92 11-145 1-99 (256)
214 COG2185 Sbm Methylmalonyl-CoA 54.8 18 0.0004 29.8 3.8 41 8-52 10-50 (143)
215 PRK13982 bifunctional SbtC-lik 54.6 42 0.0009 34.0 7.0 41 9-53 255-307 (475)
216 PF00862 Sucrose_synth: Sucros 53.9 34 0.00073 34.6 6.1 40 109-148 393-434 (550)
217 PRK03359 putative electron tra 53.7 29 0.00062 32.0 5.3 40 106-147 103-148 (256)
218 PF10083 DUF2321: Uncharacteri 53.6 40 0.00086 28.1 5.5 71 370-452 78-151 (158)
219 PF02844 GARS_N: Phosphoribosy 53.6 60 0.0013 25.1 6.2 27 117-143 62-91 (100)
220 PRK06718 precorrin-2 dehydroge 53.6 69 0.0015 28.3 7.6 143 270-432 9-164 (202)
221 COG0297 GlgA Glycogen synthase 52.4 2.8E+02 0.006 28.4 13.3 149 274-435 295-459 (487)
222 PRK08305 spoVFB dipicolinate s 51.6 15 0.00033 32.3 3.0 44 9-56 4-47 (196)
223 TIGR00725 conserved hypothetic 51.1 61 0.0013 27.4 6.6 79 288-372 41-123 (159)
224 PF03808 Glyco_tran_WecB: Glyc 50.7 98 0.0021 26.5 8.0 88 216-311 49-136 (172)
225 PRK07313 phosphopantothenoylcy 50.5 14 0.0003 32.1 2.6 44 10-58 1-44 (182)
226 cd07025 Peptidase_S66 LD-Carbo 50.4 35 0.00075 32.0 5.5 73 286-373 47-121 (282)
227 PRK04761 ppnK inorganic polyph 50.0 34 0.00074 31.3 5.2 25 346-370 27-55 (246)
228 TIGR00087 surE 5'/3'-nucleotid 49.7 1.4E+02 0.003 27.4 9.1 32 115-146 84-128 (244)
229 TIGR00661 MJ1255 conserved hyp 49.6 75 0.0016 30.3 7.9 34 338-371 87-120 (321)
230 TIGR02398 gluc_glyc_Psyn gluco 49.3 3.1E+02 0.0067 28.1 14.0 106 329-452 365-481 (487)
231 PRK06029 3-octaprenyl-4-hydrox 48.8 14 0.0003 32.2 2.3 45 10-59 1-46 (185)
232 PF02776 TPP_enzyme_N: Thiamin 47.4 74 0.0016 27.1 6.8 80 291-372 5-98 (172)
233 TIGR02370 pyl_corrinoid methyl 47.3 24 0.00051 31.1 3.7 45 9-57 83-127 (197)
234 TIGR03837 efp_adjacent_2 conse 47.1 2.2E+02 0.0047 27.8 10.1 84 287-373 192-291 (371)
235 KOG3339 Predicted glycosyltran 46.8 1.2E+02 0.0025 26.4 7.3 22 13-34 40-61 (211)
236 cd02070 corrinoid_protein_B12- 46.7 22 0.00049 31.4 3.4 43 9-55 81-123 (201)
237 COG3195 Uncharacterized protei 46.4 83 0.0018 26.6 6.3 74 355-430 88-163 (176)
238 PRK08155 acetolactate synthase 46.2 50 0.0011 34.4 6.5 89 279-371 4-109 (564)
239 PRK06732 phosphopantothenate-- 45.4 33 0.00071 31.1 4.3 37 11-51 1-49 (229)
240 PRK05595 replicative DNA helic 45.2 90 0.0019 31.5 7.9 42 12-56 203-244 (444)
241 PF00731 AIRC: AIR carboxylase 45.0 1.9E+02 0.004 24.3 10.5 137 274-432 2-148 (150)
242 PF00551 Formyl_trans_N: Formy 44.8 1.2E+02 0.0025 26.2 7.6 106 11-147 1-110 (181)
243 PRK10916 ADP-heptose:LPS hepto 44.7 58 0.0013 31.4 6.3 103 11-146 181-288 (348)
244 COG3563 KpsC Capsule polysacch 44.6 3.5E+02 0.0076 27.4 11.9 82 286-371 165-251 (671)
245 PF12146 Hydrolase_4: Putative 44.6 54 0.0012 23.9 4.6 35 11-49 16-50 (79)
246 PLN02727 NAD kinase 44.5 40 0.00087 36.8 5.3 52 345-413 744-799 (986)
247 PRK05579 bifunctional phosphop 43.5 3.4E+02 0.0074 26.9 11.8 136 272-412 7-182 (399)
248 COG0859 RfaF ADP-heptose:LPS h 42.8 66 0.0014 30.9 6.3 99 10-146 175-278 (334)
249 PRK05647 purN phosphoribosylgl 42.7 1.7E+02 0.0038 25.8 8.4 37 10-51 1-37 (200)
250 PF04127 DFP: DNA / pantothena 42.4 12 0.00025 32.7 0.9 38 11-52 4-53 (185)
251 cd02013 TPP_Xsc_like Thiamine 42.4 2.3E+02 0.005 24.7 10.5 59 347-412 103-164 (196)
252 KOG1387 Glycosyltransferase [C 42.4 3.3E+02 0.0071 26.4 16.5 116 324-452 335-460 (465)
253 KOG0780 Signal recognition par 42.2 74 0.0016 31.1 6.2 42 10-55 100-142 (483)
254 cd07062 Peptidase_S66_mccF_lik 42.1 52 0.0011 31.3 5.4 73 286-373 51-125 (308)
255 smart00851 MGS MGS-like domain 42.1 95 0.0021 23.1 5.8 80 27-143 2-90 (90)
256 COG2099 CobK Precorrin-6x redu 41.9 23 0.0005 32.3 2.7 29 117-145 196-229 (257)
257 TIGR01470 cysG_Nterm siroheme 41.1 2.6E+02 0.0055 24.8 10.9 145 271-432 9-164 (205)
258 KOG0853 Glycosyltransferase [C 40.8 13 0.00028 37.5 1.1 102 287-414 328-434 (495)
259 cd02071 MM_CoA_mut_B12_BD meth 40.8 38 0.00082 27.1 3.6 40 12-55 1-40 (122)
260 TIGR00421 ubiX_pad polyprenyl 40.7 2E+02 0.0044 24.9 8.4 101 291-394 16-145 (181)
261 PF04413 Glycos_transf_N: 3-De 40.3 93 0.002 27.1 6.3 98 12-145 22-125 (186)
262 PRK08979 acetolactate synthase 39.4 2.6E+02 0.0056 29.3 10.5 102 291-412 429-533 (572)
263 PRK00346 surE 5'(3')-nucleotid 39.4 3.1E+02 0.0067 25.2 11.8 31 116-146 81-124 (250)
264 TIGR00730 conserved hypothetic 39.3 1.5E+02 0.0033 25.6 7.3 43 329-371 81-133 (178)
265 PRK06321 replicative DNA helic 38.7 2E+02 0.0043 29.3 9.1 42 12-56 228-269 (472)
266 PRK06546 pyruvate dehydrogenas 38.6 3E+02 0.0066 28.8 10.9 100 292-412 417-518 (578)
267 cd07035 TPP_PYR_POX_like Pyrim 38.5 47 0.001 27.6 4.1 26 346-371 61-92 (155)
268 PF02142 MGS: MGS-like domain 37.8 19 0.00042 27.3 1.4 85 27-143 2-95 (95)
269 COG0801 FolK 7,8-dihydro-6-hyd 37.3 76 0.0016 26.9 4.9 36 274-309 3-38 (160)
270 TIGR00173 menD 2-succinyl-5-en 37.3 1.9E+02 0.0041 29.0 8.8 26 345-370 64-95 (432)
271 PRK00561 ppnK inorganic polyph 37.2 69 0.0015 29.6 5.1 26 345-370 34-63 (259)
272 PRK14099 glycogen synthase; Pr 36.9 44 0.00096 34.1 4.3 39 9-51 2-46 (485)
273 PRK04940 hypothetical protein; 36.3 1.1E+02 0.0023 26.6 5.8 31 117-147 60-91 (180)
274 COG1797 CobB Cobyrinic acid a, 36.1 1.7E+02 0.0038 29.1 7.8 39 12-54 2-42 (451)
275 PRK06270 homoserine dehydrogen 35.8 1.8E+02 0.0038 28.2 8.0 58 335-393 80-149 (341)
276 PF05728 UPF0227: Uncharacteri 35.5 1.1E+02 0.0024 26.6 6.0 41 107-147 49-90 (187)
277 PRK14098 glycogen synthase; Pr 35.3 50 0.0011 33.7 4.4 39 9-51 4-48 (489)
278 TIGR02852 spore_dpaB dipicolin 35.0 44 0.00096 29.1 3.3 39 12-54 2-40 (187)
279 KOG0081 GTPase Rab27, small G 34.6 1.2E+02 0.0026 25.6 5.5 34 115-148 122-165 (219)
280 cd01974 Nitrogenase_MoFe_beta 34.4 2.1E+02 0.0045 28.7 8.6 26 117-145 377-402 (435)
281 TIGR02201 heptsyl_trn_III lipo 34.3 1.4E+02 0.0031 28.6 7.2 28 117-146 260-287 (344)
282 PF06032 DUF917: Protein of un 34.1 63 0.0014 31.4 4.6 103 16-144 16-122 (353)
283 PRK09107 acetolactate synthase 34.1 3.6E+02 0.0078 28.4 10.6 120 273-412 420-542 (595)
284 PF01075 Glyco_transf_9: Glyco 34.0 49 0.0011 30.0 3.7 100 9-147 104-211 (247)
285 PRK09165 replicative DNA helic 33.8 1.7E+02 0.0038 29.9 7.9 44 12-57 219-275 (497)
286 PRK07449 2-succinyl-5-enolpyru 33.8 1.1E+02 0.0023 32.0 6.6 81 287-371 9-105 (568)
287 PRK06849 hypothetical protein; 33.3 72 0.0016 31.4 5.0 37 8-52 2-38 (389)
288 cd00550 ArsA_ATPase Oxyanion-t 33.2 1.8E+02 0.0039 26.7 7.3 37 13-53 2-39 (254)
289 PRK01175 phosphoribosylformylg 33.0 3.3E+02 0.0072 25.2 8.9 58 10-80 3-60 (261)
290 PRK05920 aromatic acid decarbo 32.9 3.4E+02 0.0074 24.0 8.6 34 359-393 125-162 (204)
291 PRK08266 hypothetical protein; 32.8 4.2E+02 0.0091 27.4 10.8 59 347-412 452-513 (542)
292 TIGR01133 murG undecaprenyldip 32.7 2.2E+02 0.0049 27.0 8.4 91 275-369 3-118 (348)
293 COG1663 LpxK Tetraacyldisaccha 32.5 1E+02 0.0023 29.5 5.5 32 17-52 56-87 (336)
294 TIGR01504 glyox_carbo_lig glyo 32.4 3.1E+02 0.0068 28.8 9.8 102 292-412 427-539 (588)
295 cd02069 methionine_synthase_B1 32.2 78 0.0017 28.3 4.6 44 9-56 87-130 (213)
296 cd03785 GT1_MurG MurG is an N- 32.1 2.9E+02 0.0063 26.2 9.1 93 275-371 2-119 (350)
297 PRK05920 aromatic acid decarbo 32.1 36 0.00079 30.1 2.4 44 10-58 3-46 (204)
298 PRK11914 diacylglycerol kinase 32.0 1.4E+02 0.0031 28.1 6.7 81 274-372 12-96 (306)
299 PF06506 PrpR_N: Propionate ca 31.9 62 0.0013 27.8 3.8 110 22-147 17-152 (176)
300 cd01968 Nitrogenase_NifE_I Nit 31.9 82 0.0018 31.3 5.2 26 117-145 356-381 (410)
301 PF02606 LpxK: Tetraacyldisacc 31.9 1.7E+02 0.0036 28.1 7.1 33 17-53 44-76 (326)
302 COG0503 Apt Adenine/guanine ph 31.9 1.3E+02 0.0027 26.1 5.7 29 117-145 53-83 (179)
303 PF02775 TPP_enzyme_C: Thiamin 31.7 2.7E+02 0.0058 22.9 7.7 64 347-412 78-144 (153)
304 PRK06276 acetolactate synthase 31.5 3.6E+02 0.0079 28.2 10.1 60 347-412 469-531 (586)
305 PRK07524 hypothetical protein; 31.5 4.4E+02 0.0095 27.2 10.6 117 273-413 396-518 (535)
306 KOG2941 Beta-1,4-mannosyltrans 31.3 5E+02 0.011 25.3 26.0 129 7-151 9-142 (444)
307 cd00984 DnaB_C DnaB helicase C 31.2 1.3E+02 0.0028 27.1 6.0 42 12-57 15-57 (242)
308 COG1484 DnaC DNA replication p 31.1 29 0.00063 32.0 1.7 47 10-60 105-151 (254)
309 PLN02470 acetolactate synthase 31.0 3.6E+02 0.0078 28.2 10.0 112 279-412 425-545 (585)
310 COG1435 Tdk Thymidine kinase [ 31.0 2.5E+02 0.0055 24.7 7.2 41 9-53 2-43 (201)
311 TIGR01501 MthylAspMutase methy 30.8 55 0.0012 26.8 3.1 43 10-56 1-43 (134)
312 PRK08760 replicative DNA helic 30.7 2.2E+02 0.0048 29.0 8.1 42 12-56 231-272 (476)
313 CHL00076 chlB photochlorophyll 30.6 76 0.0016 32.7 4.7 33 108-145 367-399 (513)
314 cd00561 CobA_CobO_BtuR ATP:cor 30.5 3.4E+02 0.0073 23.0 9.0 98 12-128 4-106 (159)
315 TIGR02700 flavo_MJ0208 archaeo 30.4 47 0.001 30.2 2.9 45 12-60 1-47 (234)
316 PRK06048 acetolactate synthase 30.2 6.2E+02 0.013 26.3 11.5 103 291-412 422-526 (561)
317 PRK02910 light-independent pro 30.1 86 0.0019 32.4 5.1 32 109-145 356-387 (519)
318 TIGR03457 sulphoacet_xsc sulfo 30.0 3.4E+02 0.0074 28.4 9.6 100 292-412 439-542 (579)
319 PF08542 Rep_fac_C: Replicatio 29.8 1.9E+02 0.0042 21.2 5.8 48 398-453 3-50 (89)
320 PF14165 YtzH: YtzH-like prote 29.6 1.3E+02 0.0028 22.4 4.4 49 400-451 28-86 (87)
321 PRK08978 acetolactate synthase 29.6 4E+02 0.0087 27.6 10.0 101 292-412 410-513 (548)
322 COG1066 Sms Predicted ATP-depe 29.4 1.4E+02 0.003 29.6 5.9 41 12-57 95-135 (456)
323 PF05225 HTH_psq: helix-turn-h 29.4 1.1E+02 0.0023 19.6 3.6 26 399-426 1-26 (45)
324 PRK07418 acetolactate synthase 29.4 5.3E+02 0.012 27.2 11.0 112 279-412 433-547 (616)
325 PF07015 VirC1: VirC1 protein; 29.4 1.1E+02 0.0023 27.7 4.9 44 12-59 3-47 (231)
326 COG4088 Predicted nucleotide k 29.3 61 0.0013 28.8 3.2 38 10-51 1-38 (261)
327 PRK09124 pyruvate dehydrogenas 29.1 5E+02 0.011 27.1 10.6 111 278-412 406-518 (574)
328 COG3265 GntK Gluconate kinase 28.9 1.2E+02 0.0026 25.5 4.6 61 349-413 3-66 (161)
329 PRK08611 pyruvate oxidase; Pro 28.9 4.4E+02 0.0095 27.6 10.2 110 279-412 407-518 (576)
330 cd01141 TroA_d Periplasmic bin 28.7 81 0.0017 27.1 4.1 29 117-145 69-99 (186)
331 PF06506 PrpR_N: Propionate ca 28.6 20 0.00044 30.9 0.2 33 341-374 31-63 (176)
332 PF07905 PucR: Purine cataboli 28.6 3E+02 0.0066 21.9 7.5 55 262-320 36-91 (123)
333 PRK06249 2-dehydropantoate 2-r 28.5 77 0.0017 30.1 4.2 35 9-52 4-38 (313)
334 PRK05986 cob(I)alamin adenolsy 28.4 4.1E+02 0.0088 23.3 10.3 99 9-127 21-125 (191)
335 TIGR01278 DPOR_BchB light-inde 28.1 96 0.0021 31.9 5.0 27 117-146 364-390 (511)
336 TIGR02638 lactal_redase lactal 27.9 87 0.0019 30.8 4.5 29 284-312 69-97 (379)
337 PF07355 GRDB: Glycine/sarcosi 27.8 1.7E+02 0.0036 28.3 6.1 34 346-388 270-303 (349)
338 TIGR00147 lipid kinase, YegS/R 27.6 2.2E+02 0.0048 26.6 7.1 68 287-372 18-91 (293)
339 PRK06965 acetolactate synthase 27.6 5.2E+02 0.011 27.1 10.5 101 291-412 445-549 (587)
340 PRK13059 putative lipid kinase 27.6 2.1E+02 0.0045 26.9 6.9 66 288-372 19-90 (295)
341 PRK07979 acetolactate synthase 27.5 4.8E+02 0.01 27.3 10.2 119 273-412 411-533 (574)
342 cd07766 DHQ_Fe-ADH Dehydroquin 27.5 1.3E+02 0.0028 28.8 5.6 29 344-373 78-113 (332)
343 PRK13337 putative lipid kinase 27.4 1.9E+02 0.0041 27.3 6.7 28 345-372 58-91 (304)
344 PRK10867 signal recognition pa 27.4 3.2E+02 0.007 27.4 8.4 42 11-56 100-143 (433)
345 TIGR00421 ubiX_pad polyprenyl 27.4 38 0.00083 29.4 1.7 43 12-59 1-43 (181)
346 PRK06276 acetolactate synthase 27.3 1.8E+02 0.0038 30.6 6.9 27 345-371 64-96 (586)
347 PRK15454 ethanol dehydrogenase 27.0 94 0.002 30.8 4.6 10 364-373 148-157 (395)
348 cd08194 Fe-ADH6 Iron-containin 27.0 1.1E+02 0.0024 30.0 5.0 11 363-373 121-131 (375)
349 PF10087 DUF2325: Uncharacteri 26.9 1.2E+02 0.0026 23.0 4.3 35 117-151 48-88 (97)
350 COG0541 Ffh Signal recognition 26.9 2.9E+02 0.0063 27.6 7.6 60 11-74 101-161 (451)
351 PF02374 ArsA_ATPase: Anion-tr 26.8 63 0.0014 30.7 3.2 41 11-55 1-42 (305)
352 PRK05784 phosphoribosylamine-- 26.8 4E+02 0.0086 27.3 9.1 31 11-50 1-33 (486)
353 TIGR00347 bioD dethiobiotin sy 26.6 3.2E+02 0.0069 22.8 7.3 28 17-48 5-32 (166)
354 TIGR02482 PFKA_ATP 6-phosphofr 26.6 67 0.0015 30.4 3.3 37 339-375 86-126 (301)
355 cd01976 Nitrogenase_MoFe_alpha 26.5 96 0.0021 31.0 4.6 33 109-146 363-395 (421)
356 PRK05858 hypothetical protein; 26.4 5.7E+02 0.012 26.5 10.4 111 279-413 406-519 (542)
357 PRK10422 lipopolysaccharide co 26.3 1E+02 0.0022 29.8 4.7 28 117-146 262-289 (352)
358 PRK07525 sulfoacetaldehyde ace 26.3 1.4E+02 0.0031 31.3 6.0 78 289-371 8-101 (588)
359 TIGR00640 acid_CoA_mut_C methy 26.2 88 0.0019 25.5 3.5 42 9-54 1-42 (132)
360 COG2894 MinD Septum formation 26.1 97 0.0021 27.9 3.9 40 10-53 1-42 (272)
361 TIGR00118 acolac_lg acetolacta 26.1 5.2E+02 0.011 26.8 10.2 122 271-412 400-524 (558)
362 COG1703 ArgK Putative periplas 25.9 3.3E+02 0.0071 25.9 7.4 40 11-54 52-91 (323)
363 cd00672 CysRS_core catalytic c 25.9 3.9E+02 0.0084 23.8 7.9 93 19-143 34-131 (213)
364 PTZ00445 p36-lilke protein; Pr 25.7 2.4E+02 0.0052 25.2 6.3 30 22-55 74-104 (219)
365 COG2327 WcaK Polysaccharide py 25.7 3.5E+02 0.0075 26.6 7.9 71 337-414 280-351 (385)
366 cd00532 MGS-like MGS-like doma 25.7 1.8E+02 0.0039 22.7 5.1 86 23-144 10-105 (112)
367 PRK13982 bifunctional SbtC-lik 25.6 7.3E+02 0.016 25.3 11.8 137 271-412 70-247 (475)
368 TIGR02329 propionate_PrpR prop 25.6 45 0.00098 34.4 2.1 30 115-147 143-172 (526)
369 PRK07773 replicative DNA helic 25.5 3E+02 0.0065 30.6 8.5 43 12-57 219-261 (886)
370 PRK11269 glyoxylate carboligas 25.5 4.8E+02 0.01 27.4 9.8 101 292-411 428-539 (591)
371 PRK05579 bifunctional phosphop 25.4 64 0.0014 32.0 3.1 48 7-59 3-50 (399)
372 cd08551 Fe-ADH iron-containing 25.3 97 0.0021 30.3 4.3 10 364-373 122-131 (370)
373 PRK13055 putative lipid kinase 25.2 3E+02 0.0065 26.4 7.6 27 346-372 61-93 (334)
374 PRK02645 ppnK inorganic polyph 25.2 59 0.0013 30.9 2.7 28 345-372 58-89 (305)
375 PRK07789 acetolactate synthase 25.2 4.9E+02 0.011 27.5 9.8 61 347-412 497-563 (612)
376 PRK08322 acetolactate synthase 25.1 1.3E+02 0.0028 31.2 5.4 27 345-371 64-96 (547)
377 PRK06882 acetolactate synthase 25.0 1.4E+02 0.003 31.2 5.7 27 345-371 68-100 (574)
378 KOG4180 Predicted kinase [Gene 25.0 1.2E+02 0.0025 28.9 4.3 59 286-370 73-135 (395)
379 PLN02939 transferase, transfer 24.8 1.1E+02 0.0025 33.8 4.9 41 8-52 479-525 (977)
380 PF01012 ETF: Electron transfe 24.8 1.5E+02 0.0033 24.9 5.0 40 105-146 80-122 (164)
381 PF08323 Glyco_transf_5: Starc 24.7 95 0.0021 28.3 3.9 37 12-52 1-43 (245)
382 PRK00881 purH bifunctional pho 24.7 2E+02 0.0044 29.4 6.4 56 10-82 4-61 (513)
383 cd01423 MGS_CPS_I_III Methylgl 24.7 2.1E+02 0.0046 22.4 5.4 87 23-143 11-106 (116)
384 TIGR02113 coaC_strep phosphopa 24.6 4.5E+02 0.0098 22.6 9.8 114 274-392 3-146 (177)
385 cd01965 Nitrogenase_MoFe_beta_ 24.6 1.2E+02 0.0025 30.5 4.8 26 117-145 371-396 (428)
386 TIGR02720 pyruv_oxi_spxB pyruv 24.6 5.2E+02 0.011 27.0 9.8 99 292-411 417-517 (575)
387 PRK10624 L-1,2-propanediol oxi 24.3 1.2E+02 0.0026 29.8 4.8 11 363-373 130-140 (382)
388 PRK06466 acetolactate synthase 24.2 5.6E+02 0.012 26.7 10.0 101 292-412 432-535 (574)
389 PF00289 CPSase_L_chain: Carba 24.2 1.3E+02 0.0028 23.6 4.0 67 288-360 12-88 (110)
390 COG2159 Predicted metal-depend 24.1 1.8E+02 0.0039 27.4 5.7 65 284-360 140-210 (293)
391 PRK05632 phosphate acetyltrans 24.1 7.8E+02 0.017 26.5 11.1 35 12-50 4-39 (684)
392 TIGR01285 nifN nitrogenase mol 24.0 1.3E+02 0.0028 30.3 4.9 33 108-145 366-398 (432)
393 PRK06163 hypothetical protein; 23.9 2.4E+02 0.0052 24.9 6.1 105 278-412 55-161 (202)
394 COG1090 Predicted nucleoside-d 23.9 3E+02 0.0066 25.7 6.8 29 19-53 5-33 (297)
395 PRK09620 hypothetical protein; 23.9 76 0.0017 28.7 3.0 37 11-51 4-52 (229)
396 cd06559 Endonuclease_V Endonuc 23.8 98 0.0021 27.5 3.6 39 107-145 83-128 (208)
397 cd01421 IMPCH Inosine monophos 23.8 1.6E+02 0.0035 25.6 4.8 53 12-81 2-56 (187)
398 PF02016 Peptidase_S66: LD-car 23.7 80 0.0017 29.6 3.2 72 286-372 47-120 (284)
399 cd03466 Nitrogenase_NifN_2 Nit 23.7 1.3E+02 0.0028 30.2 4.9 33 108-145 365-397 (429)
400 PF06180 CbiK: Cobalt chelatas 23.7 1.1E+02 0.0024 28.3 4.1 39 273-311 2-43 (262)
401 PF01210 NAD_Gly3P_dh_N: NAD-d 23.6 72 0.0016 26.7 2.7 32 12-52 1-32 (157)
402 TIGR02113 coaC_strep phosphopa 23.5 65 0.0014 27.8 2.4 42 12-58 2-43 (177)
403 cd03789 GT1_LPS_heptosyltransf 23.5 1.1E+02 0.0024 28.3 4.2 87 24-146 139-225 (279)
404 cd01981 Pchlide_reductase_B Pc 23.3 1.3E+02 0.0029 30.0 4.9 27 117-146 370-396 (430)
405 PRK09219 xanthine phosphoribos 23.2 2.4E+02 0.0051 24.7 5.8 30 116-145 49-80 (189)
406 TIGR03878 thermo_KaiC_2 KaiC d 23.1 3.8E+02 0.0082 24.6 7.6 39 12-54 38-76 (259)
407 COG2086 FixA Electron transfer 22.9 1.8E+02 0.004 26.8 5.3 39 106-146 102-146 (260)
408 PRK14092 2-amino-4-hydroxy-6-h 22.8 2E+02 0.0042 24.5 5.1 31 270-300 5-35 (163)
409 PRK08199 thiamine pyrophosphat 22.7 2.1E+02 0.0046 29.7 6.5 78 289-370 10-103 (557)
410 cd08193 HVD 5-hydroxyvalerate 22.5 1.2E+02 0.0026 29.7 4.4 10 364-373 125-134 (376)
411 TIGR00665 DnaB replicative DNA 22.5 4.7E+02 0.01 26.1 8.7 43 12-57 197-239 (434)
412 PRK08527 acetolactate synthase 22.3 2E+02 0.0042 30.1 6.1 27 345-371 67-99 (563)
413 PRK13054 lipid kinase; Reviewe 22.2 3.2E+02 0.007 25.7 7.1 80 271-371 4-91 (300)
414 TIGR02655 circ_KaiC circadian 22.2 1.4E+02 0.0031 30.4 4.9 44 11-58 264-307 (484)
415 COG2099 CobK Precorrin-6x redu 22.0 2.2E+02 0.0047 26.2 5.4 37 107-145 58-100 (257)
416 PRK11269 glyoxylate carboligas 21.9 1.8E+02 0.0039 30.5 5.8 27 345-371 69-101 (591)
417 COG1454 EutG Alcohol dehydroge 21.8 2.4E+02 0.0052 27.7 6.1 39 401-439 192-234 (377)
418 PRK05562 precorrin-2 dehydroge 21.8 5.7E+02 0.012 23.0 8.1 142 270-432 24-179 (223)
419 PF07302 AroM: AroM protein; 21.8 1.6E+02 0.0036 26.4 4.6 28 116-143 177-207 (221)
420 PRK10353 3-methyl-adenine DNA 21.8 2.8E+02 0.006 24.2 5.8 75 369-447 22-119 (187)
421 PRK09860 putative alcohol dehy 21.7 1.3E+02 0.0029 29.5 4.5 26 286-311 73-98 (383)
422 cd02015 TPP_AHAS Thiamine pyro 21.7 5.2E+02 0.011 22.2 10.2 60 347-412 100-162 (186)
423 cd03412 CbiK_N Anaerobic cobal 21.7 1.7E+02 0.0037 23.6 4.4 38 273-310 2-41 (127)
424 TIGR02483 PFK_mixed phosphofru 21.7 97 0.0021 29.7 3.4 38 338-375 88-128 (324)
425 TIGR01862 N2-ase-Ialpha nitrog 21.6 1.2E+02 0.0027 30.5 4.3 26 117-145 387-412 (443)
426 cd01840 SGNH_hydrolase_yrhL_li 21.6 2E+02 0.0044 23.6 5.0 39 271-310 50-88 (150)
427 TIGR01007 eps_fam capsular exo 21.5 1.4E+02 0.0031 26.0 4.3 37 11-51 17-55 (204)
428 PRK13011 formyltetrahydrofolat 21.5 6.8E+02 0.015 23.5 9.4 109 7-147 86-196 (286)
429 COG1422 Predicted membrane pro 21.4 3.2E+02 0.0069 24.1 6.0 36 403-438 60-96 (201)
430 PRK07206 hypothetical protein; 21.3 3.8E+02 0.0082 26.5 7.8 33 11-52 3-35 (416)
431 COG0287 TyrA Prephenate dehydr 21.2 4.5E+02 0.0097 24.6 7.6 42 10-60 3-44 (279)
432 PRK06456 acetolactate synthase 21.2 8.2E+02 0.018 25.5 10.5 60 347-412 471-533 (572)
433 PRK11199 tyrA bifunctional cho 21.2 7.6E+02 0.016 24.1 9.7 34 9-51 97-131 (374)
434 PRK12311 rpsB 30S ribosomal pr 21.2 1.2E+02 0.0026 29.0 3.9 32 116-147 151-184 (326)
435 COG1737 RpiR Transcriptional r 21.1 2.7E+02 0.0058 26.0 6.2 78 273-374 132-214 (281)
436 cd00763 Bacterial_PFK Phosphof 21.0 1E+02 0.0022 29.5 3.3 38 338-375 86-126 (317)
437 PF01372 Melittin: Melittin; 21.0 15 0.00033 20.0 -1.2 17 353-369 1-17 (26)
438 PF12363 DUF3647: Phage protei 20.9 3.2E+02 0.0069 21.5 5.7 49 382-432 52-100 (113)
439 cd08181 PPD-like 1,3-propanedi 20.8 1.7E+02 0.0037 28.4 5.0 27 286-312 68-94 (357)
440 PRK07789 acetolactate synthase 20.7 2.1E+02 0.0044 30.3 5.9 79 289-371 33-127 (612)
441 PLN03064 alpha,alpha-trehalose 20.7 4.2E+02 0.0092 29.6 8.3 103 332-452 446-560 (934)
442 PRK05636 replicative DNA helic 20.6 4.2E+02 0.0092 27.2 7.9 43 11-56 266-308 (505)
443 TIGR01286 nifK nitrogenase mol 20.6 1.5E+02 0.0032 30.6 4.6 27 116-145 436-462 (515)
444 PF01513 NAD_kinase: ATP-NAD k 20.5 76 0.0016 29.8 2.4 54 343-413 75-132 (285)
445 PRK09107 acetolactate synthase 20.5 2.3E+02 0.005 29.8 6.2 80 289-371 13-107 (595)
446 PRK07525 sulfoacetaldehyde ace 20.5 7.2E+02 0.016 26.0 9.9 100 292-412 444-547 (588)
447 PRK08155 acetolactate synthase 20.5 9.7E+02 0.021 24.9 10.9 120 274-412 410-531 (564)
448 smart00046 DAGKc Diacylglycero 20.5 77 0.0017 25.4 2.1 29 346-374 51-88 (124)
449 TIGR02699 archaeo_AfpA archaeo 20.4 71 0.0015 27.5 2.0 42 12-58 1-44 (174)
450 KOG1111 N-acetylglucosaminyltr 20.4 8.2E+02 0.018 24.0 10.6 80 288-370 211-301 (426)
451 COG2109 BtuR ATP:corrinoid ade 20.4 5.9E+02 0.013 22.3 8.7 103 11-128 29-133 (198)
452 PRK08978 acetolactate synthase 20.4 1.8E+02 0.0039 30.1 5.4 26 346-371 65-96 (548)
453 cd02004 TPP_BZL_OCoD_HPCL Thia 20.3 5.2E+02 0.011 21.7 9.8 58 347-412 98-160 (172)
454 cd08191 HHD 6-hydroxyhexanoate 20.3 1.8E+02 0.004 28.6 5.2 10 364-373 121-130 (386)
455 TIGR02853 spore_dpaA dipicolin 20.2 2.8E+02 0.006 26.1 6.1 74 272-360 152-225 (287)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.3e-64 Score=496.51 Aligned_cols=431 Identities=28% Similarity=0.488 Sum_probs=334.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNP 88 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (454)
++.|||++|++++||++|++.||+.| ..+| +.|||++++.+....... . .+++|..+|+++|.+.......
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~L--a~~G--~~VT~v~T~~n~~~~~~~---~--~~i~~~~ip~glp~~~~~~~~~ 76 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTL--HLKG--FSITIAQTKFNYFSPSDD---F--TDFQFVTIPESLPESDFKNLGP 76 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHH--HcCC--CEEEEEeCcccccccccC---C--CCeEEEeCCCCCCcccccccCH
Confidence 57899999999999999999999999 8899 999999998764211110 1 2699999999888642111111
Q ss_pred cchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhh---h
Q 012893 89 REPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREI---I 165 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~---~ 165 (454)
...+..+.+.....+.+.+.++......+++|||+|++..|+..+|+++|||++.+++++++.+..+.+...+... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 156 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLA 156 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCC
Confidence 2222222223333444444443321223579999999999999999999999999999998887665543222211 0
Q ss_pred CCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhcc-CCeEE
Q 012893 166 GVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRF-RKFLN 244 (454)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 244 (454)
............+|+++.++.++++..... . .......+... .....++.+++|||++||+.+++..+... +++++
T Consensus 157 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~-~-~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~ 233 (451)
T PLN02410 157 PLKEPKGQQNELVPEFHPLRCKDFPVSHWA-S-LESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYP 233 (451)
T ss_pred CccccccCccccCCCCCCCChHHCcchhcC-C-cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEE
Confidence 111100111223788887777777753321 1 11122222222 23467889999999999999999988765 58999
Q ss_pred eccCCCCCC--CCC-CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCc------ccc
Q 012893 245 VGPSTLTSP--PPV-SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNA------EEQ 315 (454)
Q Consensus 245 vGp~~~~~~--~~~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~ 315 (454)
|||+..... ... ..+.++.+||+.+++++||||||||....+.+++.+++.+++..+.+|+|+++... ...
T Consensus 234 vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~ 313 (451)
T PLN02410 234 IGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIES 313 (451)
T ss_pred ecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhc
Confidence 999975422 111 12335789999999999999999999999999999999999999999999998431 124
Q ss_pred cchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcC
Q 012893 316 LPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXG 395 (454)
Q Consensus 316 l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 395 (454)
+|++|.++.++|+++++|+||.+||+|++|++|||||||||+.||+++|||||++|+.+||+.||+++++.||+|+.++
T Consensus 314 lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~- 392 (451)
T PLN02410 314 LPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE- 392 (451)
T ss_pred CChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999889999997
Q ss_pred CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 396 EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 396 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+.+++++|+++|+++|.++++++||++|+++++++++++.+||||..++++||+++.
T Consensus 393 ~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 393 GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 568999999999999988778899999999999999999999999999999999875
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.8e-64 Score=491.56 Aligned_cols=420 Identities=28% Similarity=0.487 Sum_probs=328.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCC-CCCCC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGF-RFTGN 87 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 87 (454)
++.|||++|++++||++|++.||+.| ..+| +.|||++++.+...+... .. .+++|+.+|+++|++. +...+
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~L--a~~G--~~vT~v~t~~~~~~~~~~---~~-~~i~~~~ipdglp~~~~~~~~~ 75 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRL--HSKG--FKTTHTLTTFIFNTIHLD---PS-SPISIATISDGYDQGGFSSAGS 75 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHH--HcCC--CEEEEEECCchhhhcccC---CC-CCEEEEEcCCCCCCcccccccC
Confidence 45799999999999999999999999 8899 999999999776554321 11 2699999999998742 32212
Q ss_pred CcchHHHHHHhchHHHHHHHHHHHHhc--CCCc-cEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhh
Q 012893 88 PREPVEHFLKATPGNFVRALEKAVAKT--GLEI-SCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREI 164 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p-D~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (454)
.. .++........+.++++++.. ..+| +|||+|.+.+|+..+|+++|||++.+++++++.+..+++. ....
T Consensus 76 ~~----~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~~- 149 (449)
T PLN02173 76 VP----EYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YINN- 149 (449)
T ss_pred HH----HHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhcc-
Confidence 22 222222223334444444432 1245 9999999999999999999999999999887776554432 1111
Q ss_pred hCCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeEE
Q 012893 165 IGVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLN 244 (454)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 244 (454)
....+ .+||++.++.++++.++..........+.+.+......+++.+++|||++||+.+++..+.. ++++.
T Consensus 150 ------~~~~~-~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~~v~~ 221 (449)
T PLN02173 150 ------GSLTL-PIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-CPVLT 221 (449)
T ss_pred ------CCccC-CCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-CCeeE
Confidence 01112 26888878888888765422212112232323335567789999999999999988887654 46999
Q ss_pred eccCCCCC--------CCCC-------CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEc
Q 012893 245 VGPSTLTS--------PPPV-------SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFR 309 (454)
Q Consensus 245 vGp~~~~~--------~~~~-------~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 309 (454)
|||+.... .... ..++++.+||+.++++++|||||||+...+.+++.+++.++ .+.+|+|+++
T Consensus 222 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr 299 (449)
T PLN02173 222 IGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVR 299 (449)
T ss_pred EcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEe
Confidence 99996321 0000 12345889999999999999999999999999999999999 6778999998
Q ss_pred CCcccccchhhhhhh-CCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhc
Q 012893 310 GNAEEQLPKGFLERT-KSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWG 388 (454)
Q Consensus 310 ~~~~~~l~~~~~~~~-~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G 388 (454)
......+|++|.++. ++|+++.+|+||..||+|++|++|||||||||++||+++|||||++|+++||+.||+++++.||
T Consensus 300 ~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g 379 (449)
T PLN02173 300 ASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWK 379 (449)
T ss_pred ccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhC
Confidence 644445888998887 5889999999999999999999999999999999999999999999999999999999999889
Q ss_pred eeecCcCC----CCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 389 IGVGVXGE----KFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 389 ~G~~~~~~----~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+|+.+..+ ..+.++|.++|+++|.|++++.+|+||++++++.++++++||||.+++++|++++.
T Consensus 380 ~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 380 VGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred ceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99988532 35899999999999998878899999999999999999999999999999999875
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-63 Score=493.01 Aligned_cols=432 Identities=25% Similarity=0.426 Sum_probs=335.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccccc--ccc---cC-C-CCeeEEeCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFME--KDE---LR-D-CKIVPYNVESGLPEGF 82 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~--~~~---~~-~-~~~~~~~i~~~~~~~~ 82 (454)
+.|||++|+|++||++|++.||+.| ..+| ..|||++++.+..++.+. ... .+ + ..++|..+|+++|.+.
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~L--a~~G--~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~ 82 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLL--ASKG--LLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDD 82 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHH--HhCC--CeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCc
Confidence 5799999999999999999999999 8899 999999999766554321 000 00 0 1367777888887654
Q ss_pred CCCCCCcchHHHHHHhchHHHHHHHHHHHHhc--CCC-ccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchh
Q 012893 83 RFTGNPREPVEHFLKATPGNFVRALEKAVAKT--GLE-ISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSD 159 (454)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 159 (454)
+...+ +..++........+.+.++++.+ ..+ ++|||+|.+..|+..+|+++|||++.+++++++.+..+++..
T Consensus 83 ~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 83 PRRQD----LDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred ccccC----HHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 32111 12222222223344444444433 123 499999999999999999999999999999988887765542
Q ss_pred HHHhhhCCCCCC--CCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHh
Q 012893 160 IIREIIGVNGPE--NQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKS 237 (454)
Q Consensus 160 ~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (454)
......+... ...+ .+||++.++.++++.++..........+.+.+.......++.+++|||.+||+..++.++.
T Consensus 159 --~~~~~~~~~~~~~~~~-~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 235 (480)
T PLN02555 159 --HGLVPFPTETEPEIDV-QLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSK 235 (480)
T ss_pred --hcCCCcccccCCCcee-ecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhh
Confidence 1111111111 1223 3899988888899876542111122223233333456778899999999999999888876
Q ss_pred ccCCeEEeccCCCCCC---C---C--CCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEc
Q 012893 238 RFRKFLNVGPSTLTSP---P---P--VSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFR 309 (454)
Q Consensus 238 ~~~~~~~vGp~~~~~~---~---~--~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 309 (454)
..+ ++.|||+..... . . ...++++.+||+.++++++|||||||+...+.+++.+++.+++..+++|||+++
T Consensus 236 ~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~ 314 (480)
T PLN02555 236 LCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMR 314 (480)
T ss_pred CCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 555 999999964321 1 0 122356899999998889999999999999999999999999999999999987
Q ss_pred CCc------ccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHH
Q 012893 310 GNA------EEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRII 383 (454)
Q Consensus 310 ~~~------~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v 383 (454)
... ...+|++|.++.++|+++.+|+||.+||.|++|++|||||||||+.||+++|||||++|+++||+.||+++
T Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 394 (480)
T PLN02555 315 PPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394 (480)
T ss_pred cCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH
Confidence 421 12478889888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhceeecCc-----CCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 384 ETAWGIGVGVX-----GEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 384 ~~~~G~G~~~~-----~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
++.||+|+.++ ...++.++|.++|+++|++++++.+|+||++|+++.++++.+||||.+++++||+++.+
T Consensus 395 ~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 395 VDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 99999999993 34579999999999999988889999999999999999999999999999999999874
No 4
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=4.5e-63 Score=490.38 Aligned_cols=430 Identities=26% Similarity=0.483 Sum_probs=331.0
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCC
Q 012893 7 STQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTG 86 (454)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 86 (454)
...+.||||+|+|++||++|++.||++|+..++| ++|||++++.+.++++....+.+ .+++..+|++++++.. .
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G--~~VT~v~t~~~~~~~~~~~~~~~--~~~~~~~~~glp~~~~--~ 78 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKN--LHFTLATTEQARDLLSTVEKPRR--PVDLVFFSDGLPKDDP--R 78 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCC--cEEEEEeccchhhhhccccCCCC--ceEEEECCCCCCCCcc--c
Confidence 5557899999999999999999999994105899 99999999988766643311122 6888888888876642 1
Q ss_pred CCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhC
Q 012893 87 NPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIG 166 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (454)
+.. .+.........+.++++++.. +|||||+|.+.+|+..+|+++|||++.++++++..+..+.+...... .
T Consensus 79 ~~~----~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~--~ 150 (456)
T PLN02210 79 APE----TLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTN--S 150 (456)
T ss_pred CHH----HHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccC--C
Confidence 111 222222223344445555543 79999999999999999999999999999888877765544321111 1
Q ss_pred CCCCCC-CccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeEEe
Q 012893 167 VNGPEN-QTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLNV 245 (454)
Q Consensus 167 ~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 245 (454)
.+.... .....+|+++.++.++++..+.. .....+..++.+.......++.+++||+.++|+..++..+.. +++++|
T Consensus 151 ~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-~~v~~V 228 (456)
T PLN02210 151 FPDLEDLNQTVELPALPLLEVRDLPSFMLP-SGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL-KPVIPI 228 (456)
T ss_pred CCcccccCCeeeCCCCCCCChhhCChhhhc-CCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-CCEEEE
Confidence 111110 11123788877788888765442 111223333334444556788999999999999988887663 679999
Q ss_pred ccCCCCC-----CCC---------CCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCC
Q 012893 246 GPSTLTS-----PPP---------VSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGN 311 (454)
Q Consensus 246 Gp~~~~~-----~~~---------~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 311 (454)
||+.... ... ...++++.+|++.++++++|||||||....+.+++++++.+++..+.+|||+++..
T Consensus 229 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~ 308 (456)
T PLN02210 229 GPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK 308 (456)
T ss_pred cccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9997421 100 01234578999999889999999999998899999999999999999999999864
Q ss_pred cccccchhhhhhh-CCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhcee
Q 012893 312 AEEQLPKGFLERT-KSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIG 390 (454)
Q Consensus 312 ~~~~l~~~~~~~~-~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G 390 (454)
.....++.|.++. ++|++|++|+||.+||+|+++++|||||||||+.||+++|||||++|+.+||+.||+++++.||+|
T Consensus 309 ~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G 388 (456)
T PLN02210 309 EKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIG 388 (456)
T ss_pred ccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeE
Confidence 3222345565665 478888999999999999999999999999999999999999999999999999999999844999
Q ss_pred ecCcC----CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 391 VGVXG----EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 391 ~~~~~----~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+.++. +.+++++|+++|+++|.|++|+++|+||++|++..++++.+||||..++++||+++.
T Consensus 389 ~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 389 VRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred EEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99853 358999999999999998878899999999999999999999999999999999875
No 5
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.8e-63 Score=488.67 Aligned_cols=429 Identities=26% Similarity=0.421 Sum_probs=330.2
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCC
Q 012893 6 GSTQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFT 85 (454)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 85 (454)
++.++.|||++|+|++||++|++.||+.| ..+| ++|||++++.+..++....... .+++|+.+|++++.+. .
T Consensus 2 ~~~~~~HVVlvPfPaqGHi~PmL~LAk~L--as~G--~~VT~vtt~~~~~~~~~~~~~~--~~i~~v~lp~g~~~~~--~ 73 (448)
T PLN02562 2 KVTQRPKIILVPYPAQGHVTPMLKLASAF--LSRG--FEPVVITPEFIHRRISATLDPK--LGITFMSISDGQDDDP--P 73 (448)
T ss_pred CCCCCcEEEEEcCccccCHHHHHHHHHHH--HhCC--CEEEEEeCcchhhhhhhccCCC--CCEEEEECCCCCCCCc--c
Confidence 46677899999999999999999999999 8899 9999999998776554331111 2699999998775421 1
Q ss_pred CCCcchHHHHHHhchHHHHHHHHHHHHhcC--CCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHh
Q 012893 86 GNPREPVEHFLKATPGNFVRALEKAVAKTG--LEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIRE 163 (454)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 163 (454)
.. +..+.......+.+.+.++++.+. ..++|||+|++..|+..+|+++|||++.++++++..+..+.+.+....
T Consensus 74 ---~~-~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~ 149 (448)
T PLN02562 74 ---RD-FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVR 149 (448)
T ss_pred ---cc-HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhh
Confidence 11 222222222234455555555541 234899999999999999999999999999988876665544322211
Q ss_pred hhCCCC---C-CCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHh--
Q 012893 164 IIGVNG---P-ENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKS-- 237 (454)
Q Consensus 164 ~~~~~~---~-~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 237 (454)
.-..+. . ....+..+||++.++..+++.++..........+.+.+.......++.+++|||.+||+..++....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 229 (448)
T PLN02562 150 TGLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASY 229 (448)
T ss_pred ccccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhh
Confidence 100000 0 0112224788887888888865432211222233444444566778899999999999987776543
Q ss_pred ---ccCCeEEeccCCCCCCC----C--CCCCCCccchhccCCCCcEEEEeeCCCC-CCCHHHHHHHHHHHHhcCCCEEEE
Q 012893 238 ---RFRKFLNVGPSTLTSPP----P--VSDPHGCLPWLNEHENASVIYISFGSMI-TPPRAEVIALAEALEAIGFPFLWS 307 (454)
Q Consensus 238 ---~~~~~~~vGp~~~~~~~----~--~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~~~~~~~~~~i~~ 307 (454)
..|+++.|||+...... . .+.+.++.+||+.++++++|||||||+. ..+.+++++++.+++..+.+|||+
T Consensus 230 ~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~ 309 (448)
T PLN02562 230 NNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWV 309 (448)
T ss_pred ccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 34789999999764321 1 1223457799999988899999999986 568899999999999999999999
Q ss_pred EcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhh
Q 012893 308 FRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAW 387 (454)
Q Consensus 308 ~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~ 387 (454)
++......+|++|.++.++|+++.+|+||.+||+|++|++||||||+||++||+++|||||++|+.+||+.||+++++.|
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~ 389 (448)
T PLN02562 310 LNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVW 389 (448)
T ss_pred EcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHh
Confidence 97643335788998888999999999999999999999999999999999999999999999999999999999998767
Q ss_pred ceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 388 GIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 388 G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
|+|+.++ +.+.++|.++|+++|+|+ +||+||++++++++++ +.||||.+++++||++++
T Consensus 390 g~g~~~~--~~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 390 KIGVRIS--GFGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred CceeEeC--CCCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9998885 379999999999999886 9999999999999887 567999999999999874
No 6
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.3e-63 Score=490.29 Aligned_cols=439 Identities=25% Similarity=0.367 Sum_probs=333.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCC----CCCCCC
Q 012893 6 GSTQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVE----SGLPEG 81 (454)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 81 (454)
+...++|||++|||++||++|++.||+.| ..+| +.|||++++.+..++.......+ +++++.+| +++|++
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~L--a~~G--~~VTfv~T~~n~~~~~~~~~~~~--~i~~~~lp~P~~~~lPdG 78 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRL--ALRG--LTITVLVTPKNLPFLNPLLSKHP--SIETLVLPFPSHPSIPSG 78 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHH--HhCC--CEEEEEeCCCcHHHHhhhcccCC--CeeEEeCCCCCcCCCCCC
Confidence 45668999999999999999999999999 8899 99999999988766544311122 57777654 356665
Q ss_pred CCCCCCCc-chHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhH
Q 012893 82 FRFTGNPR-EPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDI 160 (454)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 160 (454)
.+...+.. .....+.... ....+.+.++++....+|+|||+|.+.+|+..+|+++|||++.+++++++.+..+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 79 VENVKDLPPSGFPLMIHAL-GELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred CcChhhcchhhHHHHHHHH-HHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 54332222 2222222222 334444444555433467999999999999999999999999999999998887765431
Q ss_pred HHhhhCCCCCCCC--ccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhc
Q 012893 161 IREIIGVNGPENQ--TLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSR 238 (454)
Q Consensus 161 ~~~~~~~~~~~~~--~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (454)
.......+..... .+..+||++.++.++++.++..........+++.+.......++.+++|||++||+.+++..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 158 EMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred cccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 1100000001011 12247888888888888655432222223333333333345678899999999999999998876
Q ss_pred c--CCeEEeccCCCCCCCC----------CCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 012893 239 F--RKFLNVGPSTLTSPPP----------VSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLW 306 (454)
Q Consensus 239 ~--~~~~~vGp~~~~~~~~----------~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~ 306 (454)
+ ++++.|||+....... ...++++.+||+.++++++|||||||+...+.+++.+++.+++..+++|||
T Consensus 238 ~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 238 LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 4 6799999997432100 012346899999999999999999999988999999999999999999999
Q ss_pred EEcCCc-----ccccchhhhhhhC-CCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHH
Q 012893 307 SFRGNA-----EEQLPKGFLERTK-SYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQ 380 (454)
Q Consensus 307 ~~~~~~-----~~~l~~~~~~~~~-~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA 380 (454)
+++... ...+|++|.++.. .++++.+|+||.++|+|++|++|||||||||++||+++|||||++|+++||+.||
T Consensus 318 ~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na 397 (477)
T PLN02863 318 CVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNA 397 (477)
T ss_pred EECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhH
Confidence 998532 2357888887764 4666679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceeecCcC---CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 381 RIIETAWGIGVGVXG---EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 381 ~~v~~~~G~G~~~~~---~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+++++.||+|+.+.. ...+.+++.++|.++|.+ +++||+||+++++..++++.+||||..++++||+++.+
T Consensus 398 ~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 398 SLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred HHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 998776699999843 235899999999999942 25999999999999999999999999999999999874
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.8e-62 Score=481.45 Aligned_cols=429 Identities=26% Similarity=0.414 Sum_probs=327.8
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHhhh-cCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCC----CCCCC
Q 012893 7 STQRRHVAVLAFPFGTHAAPLLDLVRRLSEA-ALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVES----GLPEG 81 (454)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~-~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~ 81 (454)
++.++|||++|++++||++|++.||+.| . .+| ++|||++++.+..++.+..... .+++++.+|+ ++++.
T Consensus 2 ~~~~pHVvl~P~paqGHi~P~l~LAk~L--a~~~g--~~vT~v~t~~n~~~~~~~~~~~--~~i~~~~lp~p~~~glp~~ 75 (481)
T PLN02992 2 HITKPHAAMFSSPGMGHVIPVIELGKRL--SANHG--FHVTVFVLETDAASAQSKFLNS--TGVDIVGLPSPDISGLVDP 75 (481)
T ss_pred CCCCcEEEEeCCcccchHHHHHHHHHHH--HhCCC--cEEEEEeCCCchhhhhhccccC--CCceEEECCCccccCCCCC
Confidence 3457899999999999999999999999 6 689 9999999997765442221111 2688888873 44311
Q ss_pred CCCCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHH
Q 012893 82 FRFTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDII 161 (454)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (454)
. .+....+.... ..+.+.++.+++....+|+|||+|++..|+..+|+++|||++.++++++..+..+.+.+..
T Consensus 76 ~---~~~~~~~~~~~----~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 148 (481)
T PLN02992 76 S---AHVVTKIGVIM----REAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTL 148 (481)
T ss_pred C---ccHHHHHHHHH----HHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhh
Confidence 1 01111122122 2333445555554334689999999999999999999999999999988776655443222
Q ss_pred HhhhCCCCCC-CCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhc--
Q 012893 162 REIIGVNGPE-NQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSR-- 238 (454)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 238 (454)
......+... ...+ .+||++.++..+++..+.... ......+.+.......++.+++|||.+||+.+++.++..
T Consensus 149 ~~~~~~~~~~~~~~~-~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~ 225 (481)
T PLN02992 149 DKDIKEEHTVQRKPL-AMPGCEPVRFEDTLDAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKL 225 (481)
T ss_pred ccccccccccCCCCc-ccCCCCccCHHHhhHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccc
Confidence 1111111000 1122 388888888888875332211 122233334445567799999999999999999887642
Q ss_pred -----cCCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCc-
Q 012893 239 -----FRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNA- 312 (454)
Q Consensus 239 -----~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 312 (454)
-+.++.|||+...... ...+.++.+||+.+++++||||||||...++.+++++++.+++..+++|||++++..
T Consensus 226 ~~~~~~~~v~~VGPl~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~ 304 (481)
T PLN02992 226 LGRVARVPVYPIGPLCRPIQS-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVD 304 (481)
T ss_pred cccccCCceEEecCccCCcCC-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 1469999999754321 123456899999998899999999999999999999999999999999999996310
Q ss_pred -------------------ccccchhhhhhhCCCc-eEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeecccc
Q 012893 313 -------------------EEQLPKGFLERTKSYG-KVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPV 372 (454)
Q Consensus 313 -------------------~~~l~~~~~~~~~~nv-~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~ 372 (454)
...+|++|.++..++. .+.+|+||.+||.|+++++||||||+||+.||+++|||||++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~ 384 (481)
T PLN02992 305 GSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPL 384 (481)
T ss_pred cccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCc
Confidence 1247889998887655 45599999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHH-HhhceeecCcC--CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHH
Q 012893 373 FADQALNQRIIE-TAWGIGVGVXG--EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVE--SDGSSTKNFKAL 447 (454)
Q Consensus 373 ~~DQ~~nA~~v~-~~~G~G~~~~~--~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~~~~ 447 (454)
++||+.||++++ ++ |+|+.++. +.++.++|.++|+++|.|++++++|+++++++++.++++. +||||.+++++|
T Consensus 385 ~~DQ~~na~~~~~~~-g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~ 463 (481)
T PLN02992 385 FAEQNMNAALLSDEL-GIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRV 463 (481)
T ss_pred cchhHHHHHHHHHHh-CeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999999999996 66 99999975 3589999999999999987788999999999999999994 599999999999
Q ss_pred HHHHhc
Q 012893 448 VEVVNM 453 (454)
Q Consensus 448 ~~~~~~ 453 (454)
++++.+
T Consensus 464 v~~~~~ 469 (481)
T PLN02992 464 TKECQR 469 (481)
T ss_pred HHHHHH
Confidence 999874
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.8e-62 Score=485.66 Aligned_cols=431 Identities=28% Similarity=0.473 Sum_probs=332.8
Q ss_pred cCCCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcC--CCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCC
Q 012893 5 AGSTQRRHVAVLAFPFGTHAAPLLDLVRRLSEAAL--EEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGF 82 (454)
Q Consensus 5 ~~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~--G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 82 (454)
+.++.+.||+++|+|++||++|++.||++| .++ | |+|||++++.+.+++++.. .. .+++|+++|++++.+.
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L--~~~~~G--~~VT~~~t~~~~~~i~~~~-~~--~gi~fv~lp~~~p~~~ 77 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLL--ASRKPD--ILITFVVTEEWLGLIGSDP-KP--DNIRFATIPNVIPSEL 77 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHH--HcCCCC--cEEEEEeCCchHhHhhccC-CC--CCEEEEECCCCCCCcc
Confidence 345678999999999999999999999999 888 9 9999999998877766531 01 2799999998776543
Q ss_pred CCCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHH
Q 012893 83 RFTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIR 162 (454)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 162 (454)
....+ +..++......+.+.++++++.+..++||||+|.+++|+..+|+++|||++.+++++...+..+.+.....
T Consensus 78 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 78 VRAAD----FPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred ccccC----HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 22111 22233333334445555555554346799999999999999999999999999999986666554432221
Q ss_pred hh--hCCCCC--CCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhc
Q 012893 163 EI--IGVNGP--ENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSR 238 (454)
Q Consensus 163 ~~--~~~~~~--~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (454)
+. .+.... ....+..+|+++.++..+++.++.. ......+.+........+++.+++||+++||+..++.++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 231 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHG--NSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK 231 (459)
T ss_pred hccCCCCccccccCCccccCCCCCCCChHHCchhhcC--CchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh
Confidence 11 011110 1112334788877777777765432 12122223333334556678999999999999989888776
Q ss_pred c-CCeEEeccCCCCCCC---C----C-CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEc
Q 012893 239 F-RKFLNVGPSTLTSPP---P----V-SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFR 309 (454)
Q Consensus 239 ~-~~~~~vGp~~~~~~~---~----~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 309 (454)
+ ++++.|||+...... . . ..+.++.+|++.++++++|||||||+...+.+++++++.+++..+.+|||+.+
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~ 311 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVAR 311 (459)
T ss_pred cCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 5 479999999753211 0 1 11236789999998899999999999888889999999999999999999876
Q ss_pred CCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhce
Q 012893 310 GNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGI 389 (454)
Q Consensus 310 ~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~ 389 (454)
+. ..++.++.++|+++.+|+||..||.|++|++||||||+||++||+++|||||++|+.+||+.||+++++.||+
T Consensus 312 ~~-----~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~ 386 (459)
T PLN02448 312 GE-----ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKI 386 (459)
T ss_pred Cc-----hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCc
Confidence 43 1244444557899999999999999999999999999999999999999999999999999999999997799
Q ss_pred eecCcC-----CCCCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 390 GVGVXG-----EKFTKDETVNALKQVLSSE--EGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 390 G~~~~~-----~~~~~~~l~~av~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
|+.+.. +..++++|+++|+++|+|+ ++++||+||++++++++++..+||||.+++++||+++++
T Consensus 387 G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 387 GWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred eEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 988852 3479999999999999863 578999999999999999999999999999999999875
No 9
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.1e-61 Score=475.49 Aligned_cols=437 Identities=30% Similarity=0.475 Sum_probs=331.6
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccccccc--ccCCCCeeEEeCC-----CCCC
Q 012893 7 STQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKD--ELRDCKIVPYNVE-----SGLP 79 (454)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~-----~~~~ 79 (454)
+.++.|||++|++++||++|++.||+.| ..+| +.|||++++.+..++..... ...+..++|+.+| +++|
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~L--a~~G--~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp 80 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLL--AERG--VIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLP 80 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHH--HhCC--CeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCC
Confidence 3456899999999999999999999999 8899 99999999987665543211 0111248888887 5887
Q ss_pred CCCCCCCCCc--chHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhc
Q 012893 80 EGFRFTGNPR--EPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVD 157 (454)
Q Consensus 80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 157 (454)
.+.+...+.. ..+..+.... ..+.+.+.++++....+|+|||+|.+.+|+..+|+++|||++.+++++++....+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 81 IGCENLDTLPSRDLLRKFYDAV-DKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred CCccccccCCcHHHHHHHHHHH-HHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 6654322222 2333332222 345566666666543468999999999999999999999999999988877664432
Q ss_pred hhHHHhhhCCCCCCCCccccCCCCCc---CCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHH
Q 012893 158 SDIIREIIGVNGPENQTLESIPGFSS---IRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVET 234 (454)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (454)
..........+ .+...+ .+|+++. ++..+++..+... .....+...+......++.+++|||.+||+.+++.
T Consensus 160 ~~~~~~~~~~~-~~~~~~-~iPg~p~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 160 IRLHNAHLSVS-SDSEPF-VVPGMPQSIEITRAQLPGAFVSL---PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred HHHhcccccCC-CCCcee-ecCCCCccccccHHHCChhhcCc---ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 21111111111 111122 2777763 6666776543221 12334443443333457789999999999999988
Q ss_pred HHhcc-CCeEEeccCCCCCCC-------C---CCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCC
Q 012893 235 LKSRF-RKFLNVGPSTLTSPP-------P---VSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFP 303 (454)
Q Consensus 235 ~~~~~-~~~~~vGp~~~~~~~-------~---~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~ 303 (454)
++... ++++.|||+...... . ..+++++.+||+.+++++||||+|||.......++.+++.+++..+.+
T Consensus 235 l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~ 314 (491)
T PLN02534 235 YEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKP 314 (491)
T ss_pred HHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCC
Confidence 87765 689999999742110 0 012346889999999999999999999999999999999999999999
Q ss_pred EEEEEcCCcc-----c-ccchhhhhhh-CCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccch
Q 012893 304 FLWSFRGNAE-----E-QLPKGFLERT-KSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQ 376 (454)
Q Consensus 304 ~i~~~~~~~~-----~-~l~~~~~~~~-~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ 376 (454)
|+|+++.... . .+|++|.++. ..++++.+|+||..+|+|+++++||||||+||++||+++|||||++|+++||
T Consensus 315 flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq 394 (491)
T PLN02534 315 FIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQ 394 (491)
T ss_pred EEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccH
Confidence 9999984311 1 3578888775 4566677999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhceeecCcC------------C-CCCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHhhCCChH
Q 012893 377 ALNQRIIETAWGIGVGVXG------------E-KFTKDETVNALKQVLS--SEEGKRMRENVGALKKLAFKAVESDGSST 441 (454)
Q Consensus 377 ~~nA~~v~~~~G~G~~~~~------------~-~~~~~~l~~av~~vl~--~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 441 (454)
+.||+++++.||+|+.+.. + ..++++|+++|+++|. +++++.+|+||++|+++.++++.+||||.
T Consensus 395 ~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~ 474 (491)
T PLN02534 395 FLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSH 474 (491)
T ss_pred HHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999998899997631 1 2789999999999997 45678999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 012893 442 KNFKALVEVVNM 453 (454)
Q Consensus 442 ~~~~~~~~~~~~ 453 (454)
+++++||+++.+
T Consensus 475 ~nl~~fv~~i~~ 486 (491)
T PLN02534 475 INLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 10
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.7e-61 Score=473.40 Aligned_cols=422 Identities=24% Similarity=0.449 Sum_probs=323.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhc-CCCcEEEEEEeCCCc-CccccccccccCCCCeeEEeCCCCCCCCCCC-CC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAA-LEEEVTFSFFSTAQS-NGSLFMEKDELRDCKIVPYNVESGLPEGFRF-TG 86 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~-~G~~h~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~ 86 (454)
+.||+++|++++||++|++.||+.| .. +| +.|||++++.+ ...+....... .+++|+.++++++.+.+. ..
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~L--a~~~G--~~vT~v~t~~~~~~~~~~~~~~~--~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRL--IKTTG--TRVTFATCLSVIHRSMIPNHNNV--ENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHH--hhCCC--cEEEEEeccchhhhhhhccCCCC--CCEEEEEcCCCCCCccccccc
Confidence 4699999999999999999999999 74 69 99999999854 22211110001 269999999888876432 11
Q ss_pred CCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhC
Q 012893 87 NPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIG 166 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (454)
+....+......+...+.+.+.++... ..+++|||+|.+.+|+..+|+++|||++.+++++++.+..+++....
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~----- 150 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNG-DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG----- 150 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhcc-CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc-----
Confidence 222233333333444444444433211 13459999999999999999999999999999998887766543210
Q ss_pred CCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccC--CccEEEecCcccCCHHHHHHHHhccCCeEE
Q 012893 167 VNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLP--KATVVAINSYEELDPIVVETLKSRFRKFLN 244 (454)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 244 (454)
. ...+ .+||++.++.++++.++..........+.+.+...... .++.+++|||++||+..++..+. ..++.
T Consensus 151 ~----~~~~-~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--~~v~~ 223 (455)
T PLN02152 151 N----NSVF-EFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN--IEMVA 223 (455)
T ss_pred C----CCee-ecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc--CCEEE
Confidence 0 1112 38888878888888766432222222333333333332 24689999999999998888755 26999
Q ss_pred eccCCCCCC---C--CC-----CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCc--
Q 012893 245 VGPSTLTSP---P--PV-----SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNA-- 312 (454)
Q Consensus 245 vGp~~~~~~---~--~~-----~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 312 (454)
|||+..... . .. ..+.++.+||+.+++++||||||||+...+.+++++++.+++..+.+|||+.+...
T Consensus 224 VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~ 303 (455)
T PLN02152 224 VGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNR 303 (455)
T ss_pred EcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 999974321 0 00 12346899999998889999999999999999999999999999999999998521
Q ss_pred ------c----cccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHH
Q 012893 313 ------E----EQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRI 382 (454)
Q Consensus 313 ------~----~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~ 382 (454)
. ..++++|.++.++|++|.+|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||++
T Consensus 304 ~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 383 (455)
T PLN02152 304 EAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKL 383 (455)
T ss_pred ccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHH
Confidence 0 024688988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhceeecCc---CCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 383 IETAWGIGVGVX---GEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 383 v~~~~G~G~~~~---~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+++.||+|+.+. .+..+.++|.++|+++|+| ++..||+||++++++.++++++||||.+++++||+++
T Consensus 384 ~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 384 LEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999778877764 2346999999999999975 3567999999999999999999999999999999986
No 11
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=7.2e-61 Score=468.98 Aligned_cols=421 Identities=23% Similarity=0.335 Sum_probs=324.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccC-CCCeeEEeCC--CCCCCCCCC
Q 012893 8 TQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELR-DCKIVPYNVE--SGLPEGFRF 84 (454)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~--~~~~~~~~~ 84 (454)
+.++|||++|++++||++|++.||+.| ..+| +.|||++++.+...+... ...+ ...+.+.++| ++++.+.+.
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~L--a~~g--~~vT~~tt~~~~~~~~~~-~~~~~~~~v~~~~~p~~~glp~g~e~ 77 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKL--AEKG--HTVTFLLPKKALKQLEHL-NLFPHNIVFRSVTVPHVDGLPVGTET 77 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHH--HhCC--CEEEEEeCcchhhhhccc-ccCCCCceEEEEECCCcCCCCCcccc
Confidence 357899999999999999999999999 8899 999999999876554432 1011 0237788887 777766443
Q ss_pred CCCCc-chHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHh
Q 012893 85 TGNPR-EPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIRE 163 (454)
Q Consensus 85 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 163 (454)
..+.. .....+.. ....+.+.+.++++.. +|||||+|+ ..|+..+|+++|||++.++++++..+..+.+.. +
T Consensus 78 ~~~~~~~~~~~~~~-a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~---~ 150 (453)
T PLN02764 78 VSEIPVTSADLLMS-AMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPG---G 150 (453)
T ss_pred cccCChhHHHHHHH-HHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhccc---c
Confidence 22222 22222322 2245556666676665 789999996 889999999999999999999887776654210 0
Q ss_pred hhCCCCCCCCccccCCCCCc----CCcCCCCCccc--CCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHh
Q 012893 164 IIGVNGPENQTLESIPGFSS----IRAKDLPEGII--SGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKS 237 (454)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (454)
..+ ...||++. ++..+++.... ..........++.+.......++.+++|||.+||+.+++..+.
T Consensus 151 ~~~---------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 151 ELG---------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred cCC---------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 000 11355542 44555554211 1011112344555554556778899999999999999998877
Q ss_pred cc-CCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCc----
Q 012893 238 RF-RKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNA---- 312 (454)
Q Consensus 238 ~~-~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---- 312 (454)
.. ++++.|||+..........++++.+|||.+++++||||||||....+.+++.++..+++..+.+|+|+++...
T Consensus 222 ~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~ 301 (453)
T PLN02764 222 HCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSST 301 (453)
T ss_pred hcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcc
Confidence 54 5799999997533111112457999999999999999999999999999999999999999999999998521
Q ss_pred -ccccchhhhhhhCCCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhcee
Q 012893 313 -EEQLPKGFLERTKSYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIG 390 (454)
Q Consensus 313 -~~~l~~~~~~~~~~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G 390 (454)
...+|++|.++..++..++ +|+||..||+|++|++||||||+||++||+++|||||++|+..||+.||+++++.||+|
T Consensus 302 ~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~g 381 (453)
T PLN02764 302 IQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVS 381 (453)
T ss_pred hhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceE
Confidence 2358999999887766655 99999999999999999999999999999999999999999999999999997655999
Q ss_pred ecCcCC---CCCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 391 VGVXGE---KFTKDETVNALKQVLSS--EEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 391 ~~~~~~---~~~~~~l~~av~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+.++.+ .++.++|.++|+++|++ ++++.+|++++++++++++ +|||.+++++||+++.+
T Consensus 382 v~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 382 VEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQD 445 (453)
T ss_pred EEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 997532 58999999999999987 3578899999999999966 79999999999999874
No 12
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.7e-61 Score=473.66 Aligned_cols=418 Identities=25% Similarity=0.359 Sum_probs=320.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEe--CC--CCCCCCCC
Q 012893 8 TQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYN--VE--SGLPEGFR 83 (454)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~--~~~~~~~~ 83 (454)
.+++|||++|++++||++|++.||+.| .++| |+|||++++.+...+.+.+ ..+ .++++.. +| ++++.+.+
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~L--a~~G--~~VT~vtt~~~~~~i~~~~-a~~-~~i~~~~l~~p~~dgLp~g~~ 75 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKL--AEKG--HRVTFLLPKKAQKQLEHHN-LFP-DSIVFHPLTIPPVNGLPAGAE 75 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHH--HhCC--CEEEEEeccchhhhhhccc-CCC-CceEEEEeCCCCccCCCCCcc
Confidence 567999999999999999999999999 8899 9999999988777665441 111 1455554 44 56666543
Q ss_pred CCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHh
Q 012893 84 FTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIRE 163 (454)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 163 (454)
...+....+..++........+.++++++.. ++||||+| +..|+..+|+++|||++.++++++..+. +.+... .
T Consensus 76 ~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~ 149 (442)
T PLN02208 76 TTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--G 149 (442)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--c
Confidence 2212222233333333455666677777665 78999999 5789999999999999999999887654 333211 1
Q ss_pred hhCCCCCCCCccccCCCCCc----CCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhcc
Q 012893 164 IIGVNGPENQTLESIPGFSS----IRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRF 239 (454)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (454)
... ..+||++. ++..+++.+ . ........+..+......+++.+++|||.+||+.+++......
T Consensus 150 ~~~---------~~~pglp~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~ 217 (442)
T PLN02208 150 KLG---------VPPPGYPSSKVLFRENDAHAL-A--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY 217 (442)
T ss_pred ccC---------CCCCCCCCcccccCHHHcCcc-c--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc
Confidence 100 01455543 345555532 1 1112233444444445667999999999999999998887654
Q ss_pred -CCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCc-----c
Q 012893 240 -RKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNA-----E 313 (454)
Q Consensus 240 -~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~ 313 (454)
++++.|||+........+.+.++.+||+.++++++|||||||...++.+++.+++.+++..+.+++|+.+.+. .
T Consensus 218 ~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~ 297 (442)
T PLN02208 218 HKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQ 297 (442)
T ss_pred CCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchh
Confidence 7999999998654322233567999999998899999999999988999999999998888888888888541 2
Q ss_pred cccchhhhhhhCC-CceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeec
Q 012893 314 EQLPKGFLERTKS-YGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVG 392 (454)
Q Consensus 314 ~~l~~~~~~~~~~-nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~ 392 (454)
..+|++|.++..+ |+.+.+|+||.+||.|++|++|||||||||++||+++|||||++|+.+||+.||+++++.||+|+.
T Consensus 298 ~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~ 377 (442)
T PLN02208 298 EGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVE 377 (442)
T ss_pred hhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEE
Confidence 3588999888754 666669999999999999999999999999999999999999999999999999998875599999
Q ss_pred CcCCC---CCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 393 VXGEK---FTKDETVNALKQVLSSE--EGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 393 ~~~~~---~~~~~l~~av~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
++..+ ++.++|.++|+++|+|+ +++.+|++++++++.+.+ +|||.+++++||+++.+
T Consensus 378 ~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 378 VSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQE 439 (442)
T ss_pred eccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH
Confidence 97543 89999999999999875 478899999999999743 68999999999999864
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.1e-60 Score=474.28 Aligned_cols=431 Identities=28% Similarity=0.438 Sum_probs=327.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcC----CCcEEEEEEeCCCcCc----ccccccc--ccCCCCeeEEeCCCCC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAAL----EEEVTFSFFSTAQSNG----SLFMEKD--ELRDCKIVPYNVESGL 78 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~----G~~h~V~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~i~~~~ 78 (454)
+|.|||++|++++||++|++.||+.| ..+ | +.|||++++.+.. .+..... ...+.+++|+.+|++.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~L--a~~g~~~~--~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~ 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRL--LASSGGGA--LSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHH--HhCCCCCc--EEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC
Confidence 56799999999999999999999999 655 5 6899999876532 2221100 0010159999998654
Q ss_pred CC-CCCCCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhc
Q 012893 79 PE-GFRFTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVD 157 (454)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 157 (454)
++ +.+ +.. .+.........+.++.+++.+..+++|||+|++.+|+..+|+++|||++.++++++..+..+.+
T Consensus 78 ~p~~~e---~~~----~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 78 PPTDAA---GVE----EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred CCCccc---cHH----HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 22 211 111 2222222344444555555442346999999999999999999999999999999988877766
Q ss_pred hhHHHhhhCCCCCC-CCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHH
Q 012893 158 SDIIREIIGVNGPE-NQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLK 236 (454)
Q Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (454)
.+........+... ...+. +||++.++..+++....... +....++........+++.+++|||++||+..++.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~-iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 151 LPALDEEVAVEFEEMEGAVD-VPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhhhcccccCcccccCccee-cCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 53322211100111 11233 89988888888886554221 1112233333345677899999999999999998887
Q ss_pred hc-------cCCeEEeccCCCCCC--CCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012893 237 SR-------FRKFLNVGPSTLTSP--PPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWS 307 (454)
Q Consensus 237 ~~-------~~~~~~vGp~~~~~~--~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~ 307 (454)
.. .++++.|||+..... .....++++.+||+.++++++|||||||+...+.+++.+++.+++..+.+|||+
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv 307 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWV 307 (480)
T ss_pred hccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 63 258999999974221 112344579999999999999999999998889999999999999999999999
Q ss_pred EcCCc------------ccccchhhhhhhCCCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeecccccc
Q 012893 308 FRGNA------------EEQLPKGFLERTKSYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFA 374 (454)
Q Consensus 308 ~~~~~------------~~~l~~~~~~~~~~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~ 374 (454)
++... ...+|++|.++..++..++ +|+||.+||.|++|++|||||||||++||+++|||||++|+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~ 387 (480)
T PLN00164 308 LRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYA 387 (480)
T ss_pred EcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccc
Confidence 98531 1137888888877666665 9999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhceeecCcC-----CCCCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH
Q 012893 375 DQALNQRIIETAWGIGVGVXG-----EKFTKDETVNALKQVLSSE--EGKRMRENVGALKKLAFKAVESDGSSTKNFKAL 447 (454)
Q Consensus 375 DQ~~nA~~v~~~~G~G~~~~~-----~~~~~~~l~~av~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 447 (454)
||+.||+++++.||+|+.++. +..+.++|.++|+++|.|+ +++.+|++|+++++++++++.+||||.+++++|
T Consensus 388 DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~ 467 (480)
T PLN00164 388 EQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRL 467 (480)
T ss_pred cchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999988765599999852 2368999999999999874 478999999999999999999999999999999
Q ss_pred HHHHhc
Q 012893 448 VEVVNM 453 (454)
Q Consensus 448 ~~~~~~ 453 (454)
++++.+
T Consensus 468 v~~~~~ 473 (480)
T PLN00164 468 AREIRH 473 (480)
T ss_pred HHHHHh
Confidence 999874
No 14
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2e-60 Score=469.08 Aligned_cols=436 Identities=23% Similarity=0.378 Sum_probs=326.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc-cccccccc-cC-CCCeeEEeCCCCCCCCC-CC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG-SLFMEKDE-LR-DCKIVPYNVESGLPEGF-RF 84 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~i~~~~~~~~-~~ 84 (454)
++.||||+|++++||++|++.||+.| ..+|-...|||++++.+.. .+...... .. ..+++|..+|+...... ..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~L--a~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 79 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRL--IEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGG 79 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHH--HhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccc
Confidence 46799999999999999999999999 5553015799999987652 22111000 00 02699999985432111 11
Q ss_pred CCCCcchHHHHHHhchHHHHHHHHHHHHhc--CCC-ccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHH
Q 012893 85 TGNPREPVEHFLKATPGNFVRALEKAVAKT--GLE-ISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDII 161 (454)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (454)
..+....+..+.......+++.+.++++.. ..+ ++|||+|.+..|+..+|+++|||++.++++++..+..+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 111222222222333233355555555543 113 48999999999999999999999999999998776655443221
Q ss_pred Hhh-hCCCCCC-CCccccCCCC-CcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHh-
Q 012893 162 REI-IGVNGPE-NQTLESIPGF-SSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKS- 237 (454)
Q Consensus 162 ~~~-~~~~~~~-~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 237 (454)
... ...+... +..+ .+||+ +.++..+++.++.... ....+. +......+++.+++||+++||++.++..+.
T Consensus 160 ~~~~~~~~~~~~~~~~-~vPgl~~~l~~~dlp~~~~~~~---~~~~~~-~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~ 234 (468)
T PLN02207 160 HSKDTSVFVRNSEEML-SIPGFVNPVPANVLPSALFVED---GYDAYV-KLAILFTKANGILVNSSFDIEPYSVNHFLDE 234 (468)
T ss_pred cccccccCcCCCCCeE-ECCCCCCCCChHHCcchhcCCc---cHHHHH-HHHHhcccCCEEEEEchHHHhHHHHHHHHhc
Confidence 111 0010001 1122 38998 5788888887553211 122223 333456789999999999999998888754
Q ss_pred -ccCCeEEeccCCCCCCCCCC-----CCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCC
Q 012893 238 -RFRKFLNVGPSTLTSPPPVS-----DPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGN 311 (454)
Q Consensus 238 -~~~~~~~vGp~~~~~~~~~~-----~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 311 (454)
..|+++.|||+........+ .++++.+||+.++++++|||||||....+.+++++++.+++..+++|||+++..
T Consensus 235 ~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~ 314 (468)
T PLN02207 235 QNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTE 314 (468)
T ss_pred cCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 45789999999754321111 224699999999889999999999999999999999999999999999999853
Q ss_pred c---ccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhc
Q 012893 312 A---EEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWG 388 (454)
Q Consensus 312 ~---~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G 388 (454)
. ...+|++|.++.++|+.+.+|+||.+||.|++|++|||||||||+.||+++|||||++|+++||+.||+++++.||
T Consensus 315 ~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~g 394 (468)
T PLN02207 315 EVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELK 394 (468)
T ss_pred CccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhC
Confidence 2 2357899999999999999999999999999999999999999999999999999999999999999999888559
Q ss_pred eeecCc------C-CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 389 IGVGVX------G-EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 389 ~G~~~~------~-~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+|+.+. . +..+.++|.++|+++|.+ ++++||+||+++++.+++++.+||||..++++|+++++
T Consensus 395 vGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 395 LAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred ceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 998663 1 235999999999999973 35699999999999999999999999999999999987
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.8e-60 Score=467.65 Aligned_cols=434 Identities=24% Similarity=0.358 Sum_probs=324.5
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCC----CCCCCC
Q 012893 6 GSTQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVE----SGLPEG 81 (454)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 81 (454)
++..+.|||++|++++||++|++.||+.| ..+| +.|||++++.+..++........ .+++++.+| ++++.+
T Consensus 2 ~~~~~~HVvl~P~paqGHi~P~l~LAk~L--a~~G--~~vT~v~t~~n~~~~~~~~~~~~-~~i~~~~lp~p~~dglp~~ 76 (472)
T PLN02670 2 KREEVLHVAMFPWLAMGHLIPFLRLSKLL--AQKG--HKISFISTPRNLHRLPKIPSQLS-SSITLVSFPLPSVPGLPSS 76 (472)
T ss_pred CCCCCcEEEEeCChhhhHHHHHHHHHHHH--HhCC--CEEEEEeCCchHHhhhhccccCC-CCeeEEECCCCccCCCCCC
Confidence 34566899999999999999999999999 8899 99999999987765543211111 268898887 677765
Q ss_pred CCCCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHH
Q 012893 82 FRFTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDII 161 (454)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 161 (454)
.+...+.......++......+.+.++++++.. +++|||+|.+..|+..+|+++|||++.+++++......+.+....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 77 AESSTDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred cccccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 443222221111222333345566666666655 789999999999999999999999999999888776665433211
Q ss_pred HhhhCCCCCCCCccccCCCC----C--cCCcCCCCCcccCCCCC-CcHHHHHHHhccccCCccEEEecCcccCCHHHHHH
Q 012893 162 REIIGVNGPENQTLESIPGF----S--SIRAKDLPEGIISGPLD-SPFPIMLDKMGKTLPKATVVAINSYEELDPIVVET 234 (454)
Q Consensus 162 ~~~~~~~~~~~~~~~~~p~~----~--~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (454)
...-..+.. ...+..+|+. . .++..+++.++...... .....+. +......+++.+++|||++||+..++.
T Consensus 155 ~~~~~~~~~-~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~ 232 (472)
T PLN02670 155 MEGGDLRST-AEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDL 232 (472)
T ss_pred hhcccCCCc-cccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHH
Confidence 111011111 1111113332 2 13445666544321111 1122222 333445678899999999999999999
Q ss_pred HHhcc-CCeEEeccCCCC--CC-CCC----CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 012893 235 LKSRF-RKFLNVGPSTLT--SP-PPV----SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLW 306 (454)
Q Consensus 235 ~~~~~-~~~~~vGp~~~~--~~-~~~----~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~ 306 (454)
.+... +.++.|||+... .. ... ..+.++.+||+.+++++||||||||+...+.+++.+++.+++..+++|||
T Consensus 233 l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 233 LSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred HHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 87765 589999999642 11 110 11145889999998899999999999999999999999999999999999
Q ss_pred EEcCCc------ccccchhhhhhhCCCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHH
Q 012893 307 SFRGNA------EEQLPKGFLERTKSYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALN 379 (454)
Q Consensus 307 ~~~~~~------~~~l~~~~~~~~~~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~n 379 (454)
++++.. ...+|++|.++..++..++ +|+||.+||.|++|++|||||||||++||+++|||||++|+.+||+.|
T Consensus 313 v~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (472)
T PLN02670 313 VLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLN 392 (472)
T ss_pred EEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHH
Confidence 998531 1258899998887776664 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceeecCcC----CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 380 QRIIETAWGIGVGVXG----EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 380 A~~v~~~~G~G~~~~~----~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
|+++++. |+|+.++. +.++.++|.++|+++|.|++|++||+||+++++.+++ .+.....+++|++++.+
T Consensus 393 a~~v~~~-g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 393 TRLLHGK-KLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHc-CeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHH
Confidence 9999987 99999964 3489999999999999887788999999999999998 35556788888888763
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.3e-60 Score=474.55 Aligned_cols=432 Identities=30% Similarity=0.486 Sum_probs=325.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccc----cCC--CCeeEEeCC---CCCC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDE----LRD--CKIVPYNVE---SGLP 79 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~i~---~~~~ 79 (454)
++.|||++|+|++||++|++.||+.| ..+| |+|||++++.+..++++.+.. .++ ..+.++++| ++++
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L--~~rG--~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLF--SSRG--AKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHH--HhCC--CEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 36799999999999999999999999 8899 999999999887666543211 111 135556666 4676
Q ss_pred CCCCCCCC--------CcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhh
Q 012893 80 EGFRFTGN--------PREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRS 151 (454)
Q Consensus 80 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~ 151 (454)
.+.+.... .......+. .....+.+.+.++++.. +|||||+|.+++|+..+|+++|||++.+++++++.
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFS 156 (482)
T ss_pred CCcccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHH
Confidence 65432210 112233333 33345666666666654 79999999999999999999999999999988776
Q ss_pred hhhhhchhHHHhhhCCCCCCCCccccCCCCCc---CCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCC
Q 012893 152 LLAHVDSDIIREIIGVNGPENQTLESIPGFSS---IRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELD 228 (454)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (454)
...+.......+....+ .....+. +|+++. ++..+++.. +....+..++.........++.+++||+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~-~~~~~~~-~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le 230 (482)
T PLN03007 157 LCASYCIRVHKPQKKVA-SSSEPFV-IPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELE 230 (482)
T ss_pred HHHHHHHHhcccccccC-CCCceee-CCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHH
Confidence 65443221111000001 0011122 566642 333344321 11122344555555566778899999999999
Q ss_pred HHHHHHHHhcc-CCeEEeccCCCCCCC-------C--C-CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHH
Q 012893 229 PIVVETLKSRF-RKFLNVGPSTLTSPP-------P--V-SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEAL 297 (454)
Q Consensus 229 ~~~~~~~~~~~-~~~~~vGp~~~~~~~-------~--~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~ 297 (454)
++..+.+++.. ..+++|||+...... . . ..++++.+|++.++++++|||||||+...+...+.+++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l 310 (482)
T PLN03007 231 SAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGL 310 (482)
T ss_pred HHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHH
Confidence 98888887665 479999997542211 1 1 12356889999998899999999999888889999999999
Q ss_pred HhcCCCEEEEEcCCc-----ccccchhhhhhh-CCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccc
Q 012893 298 EAIGFPFLWSFRGNA-----EEQLPKGFLERT-KSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRP 371 (454)
Q Consensus 298 ~~~~~~~i~~~~~~~-----~~~l~~~~~~~~-~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P 371 (454)
+..+++|||+++... ...+|++|.++. +.|+++.+|+||.+||+|++|++||||||+||++||+++|||||++|
T Consensus 311 ~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 311 EGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred HHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc
Confidence 999999999998642 124788888776 46777889999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhhceeecC--------cCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 012893 372 VFADQALNQRIIETAWGIGVGV--------XGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKN 443 (454)
Q Consensus 372 ~~~DQ~~nA~~v~~~~G~G~~~--------~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 443 (454)
+.+||+.||+++++.|++|+.+ +.+.+++++|.++|+++|.|+++++||+||+++++..++++.+||||..+
T Consensus 391 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 391 VGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred chhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999998766666554 34557999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 012893 444 FKALVEVVNM 453 (454)
Q Consensus 444 ~~~~~~~~~~ 453 (454)
+++||+.+.+
T Consensus 471 l~~~v~~~~~ 480 (482)
T PLN03007 471 LNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.3e-60 Score=472.69 Aligned_cols=429 Identities=24% Similarity=0.422 Sum_probs=328.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccc--c----cccccCCCCeeEEeCCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLF--M----EKDELRDCKIVPYNVESGLPEGFR 83 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~i~~~~~~~~~ 83 (454)
|+|||++|++++||++|++.||+.| ..+|....|||++++.+...+. . .....+..+++++.+|++.+...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~L--a~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~- 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLL--VDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT- 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHH--HhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-
Confidence 6899999999999999999999999 6665115799999987654221 0 00000012699999987664221
Q ss_pred CCCCCcchHHHHHHhchHHHHHHHHHHHHhc---CCC-ccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchh
Q 012893 84 FTGNPREPVEHFLKATPGNFVRALEKAVAKT---GLE-ISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSD 159 (454)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 159 (454)
... .+..+.......+.+.+++++... ..+ .+|||+|++..|+..+|+++|||++.++++++..+..+.+.+
T Consensus 79 ---~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 79 ---EDP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred ---cch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 111 333344445556666666665432 112 389999999999999999999999999999998888776653
Q ss_pred HHHhh--hCCCC-CCC-CccccCCCCC-cCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHH
Q 012893 160 IIREI--IGVNG-PEN-QTLESIPGFS-SIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVET 234 (454)
Q Consensus 160 ~~~~~--~~~~~-~~~-~~~~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (454)
..... ..++. .+. ..+. +||+. .++..+++.....+ ...+.+.+.......++.+++||+.+|++.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~-iPgl~~pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELD-VPSLTRPYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhccccccCccccCCCCceeE-CCCCCCCCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 32211 11111 111 1233 78874 67777877544321 1223333444566779999999999999988887
Q ss_pred HHh---ccCCeEEeccCCC-CCCCC---CCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 012893 235 LKS---RFRKFLNVGPSTL-TSPPP---VSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWS 307 (454)
Q Consensus 235 ~~~---~~~~~~~vGp~~~-~~~~~---~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~ 307 (454)
+.+ ..|+++.|||+.. ..... ...+.++.+|++.++++++|||||||+...+..++++++.+++..+++|||+
T Consensus 230 l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~ 309 (481)
T PLN02554 230 FSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWS 309 (481)
T ss_pred HHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 775 3478999999943 22111 1233579999999988899999999998889999999999999999999999
Q ss_pred EcCCc--------------ccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccc
Q 012893 308 FRGNA--------------EEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVF 373 (454)
Q Consensus 308 ~~~~~--------------~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~ 373 (454)
+++.. ...+|++|.++.++|+++++|+||.+||.|++|++||||||+||+.||+++|||||++|+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 310 LRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred EcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 97521 1236889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHH-HHHHhhceeecCcC-----------CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChH
Q 012893 374 ADQALNQR-IIETAWGIGVGVXG-----------EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSST 441 (454)
Q Consensus 374 ~DQ~~nA~-~v~~~~G~G~~~~~-----------~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 441 (454)
+||+.||+ +++++ |+|+.++. ..++.++|.++|+++|+++ ++||+||+++++.++++..+||||.
T Consensus 390 ~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~av~~gGss~ 466 (481)
T PLN02554 390 AEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHVALMDGGSSH 466 (481)
T ss_pred ccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999995 56677 99999853 3579999999999999732 4999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 012893 442 KNFKALVEVVNM 453 (454)
Q Consensus 442 ~~~~~~~~~~~~ 453 (454)
.++++||+++.+
T Consensus 467 ~~l~~lv~~~~~ 478 (481)
T PLN02554 467 TALKKFIQDVTK 478 (481)
T ss_pred HHHHHHHHHHHh
Confidence 999999999975
No 18
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.5e-59 Score=459.43 Aligned_cols=432 Identities=24% Similarity=0.405 Sum_probs=325.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcC-CCcEEEEEEeCCCcCcccc-ccccc-c-CCCCeeEEeCCCCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAAL-EEEVTFSFFSTAQSNGSLF-MEKDE-L-RDCKIVPYNVESGLPEGFRFT 85 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~-G~~h~V~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~i~~~~~~~~~~~ 85 (454)
+.||+++|+|++||++|++.||+.| ..+ | ..|||++++.....+. +.... . ...+++++.+|+....+....
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~L--a~~~g--~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~ 78 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRL--SSVLN--IHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEP 78 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHH--HhCCC--CeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCC
Confidence 5699999999999999999999999 655 9 9999999876554321 11000 1 101589999984332221010
Q ss_pred CCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCC-eEEEeCchhhhhhhhhchhHHHhh
Q 012893 86 GNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVP-WIAYWTAGPRSLLAHVDSDIIREI 164 (454)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~ 164 (454)
+. .....+.... ..+.+.++++++.+..+|+|||+|.+..|+..+|+++||| .+.+++++++....+++.+...+.
T Consensus 79 -~~-~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~ 155 (470)
T PLN03015 79 -DA-TIFTKMVVKM-RAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTV 155 (470)
T ss_pred -Cc-cHHHHHHHHH-HhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcc
Confidence 11 2222222222 3444555656655434679999999999999999999999 577777777666555544332221
Q ss_pred hCCCCCC-CCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhc-----
Q 012893 165 IGVNGPE-NQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSR----- 238 (454)
Q Consensus 165 ~~~~~~~-~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 238 (454)
..-.... ...+ .+||++.++..+++..+.... ......+. ........++.+++|||++||+..++.++..
T Consensus 156 ~~~~~~~~~~~~-~vPg~p~l~~~dlp~~~~~~~-~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~ 232 (470)
T PLN03015 156 VEGEYVDIKEPL-KIPGCKPVGPKELMETMLDRS-DQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNR 232 (470)
T ss_pred cccccCCCCCee-eCCCCCCCChHHCCHhhcCCC-cHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHhhccccc
Confidence 1100001 1223 389998888888886443221 11133333 3334567899999999999999999888764
Q ss_pred --cCCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCC-----
Q 012893 239 --FRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGN----- 311 (454)
Q Consensus 239 --~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----- 311 (454)
.+.++.|||+...... ...+.++.+||+.+++++||||||||....+.+++.+++.+++..+++|||+.+..
T Consensus 233 ~~~~~v~~VGPl~~~~~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~ 311 (470)
T PLN03015 233 VMKVPVYPIGPIVRTNVH-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLG 311 (470)
T ss_pred ccCCceEEecCCCCCccc-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccc
Confidence 1469999999743211 12234699999999999999999999999999999999999999999999999732
Q ss_pred --------cccccchhhhhhhCCCceE-eeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHH
Q 012893 312 --------AEEQLPKGFLERTKSYGKV-VPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRI 382 (454)
Q Consensus 312 --------~~~~l~~~~~~~~~~nv~v-~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~ 382 (454)
....+|++|.++..++..+ .+|+||..+|.|++|++|||||||||+.||+++|||||++|+++||+.||++
T Consensus 312 ~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~ 391 (470)
T PLN03015 312 ASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATL 391 (470)
T ss_pred cccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHH
Confidence 1124788999888777765 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhceeecCc----CCCCCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 383 IETAWGIGVGVX----GEKFTKDETVNALKQVLSS--EEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 383 v~~~~G~G~~~~----~~~~~~~~l~~av~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+++.||+|+.+. .+.++.++|+++|+++|++ ++|+.+|+||++|+++.++++++||||.+++++|++++.
T Consensus 392 ~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 392 LTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 977779999985 2358999999999999963 568899999999999999999999999999999998864
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-59 Score=469.09 Aligned_cols=432 Identities=26% Similarity=0.406 Sum_probs=321.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEE---EEEEeCCCcCc-----cccccccccCCCCeeEEeCCCCCCC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVT---FSFFSTAQSNG-----SLFMEKDELRDCKIVPYNVESGLPE 80 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~---V~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (454)
++.|||++|++++||++|++.||+.| ..+| .. ||+++++.... .+.......+ +++|+.+|++...
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~L--a~~G--~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~--~i~~~~lp~~~~p 75 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRL--INLD--RRIHTITILYWSLPFAPQADAFLKSLIASEP--RIRLVTLPEVQDP 75 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHH--HhCC--CCeEEEEEEECCCCcchhhhHHHhhcccCCC--CeEEEECCCCCCC
Confidence 56799999999999999999999999 7777 54 56666443221 1111100012 6999999865421
Q ss_pred -CCCC-CCCCcchHHHHHHhchHHHHHHHHHHHHhc-C--C-CccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhh
Q 012893 81 -GFRF-TGNPREPVEHFLKATPGNFVRALEKAVAKT-G--L-EISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLA 154 (454)
Q Consensus 81 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 154 (454)
..+. .......+..+.......+.+.+.++.... . . +++|||+|.+..|+..+|+++|||++.+++++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~ 155 (475)
T PLN02167 76 PPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGM 155 (475)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 1110 111112333344444445555555544322 1 1 35999999999999999999999999999999887776
Q ss_pred hhchhHHHhhhCCC--CCC-CCccccCCCC-CcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHH
Q 012893 155 HVDSDIIREIIGVN--GPE-NQTLESIPGF-SSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPI 230 (454)
Q Consensus 155 ~~~~~~~~~~~~~~--~~~-~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (454)
+++.+......... ... ...+. +||+ ..++..+++....... ..+.+.+.......++.+++|||++||+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~-iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 156 MKYLPERHRKTASEFDLSSGEEELP-IPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred HHHHHHhccccccccccCCCCCeeE-CCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 65433221111100 111 12233 7888 4577777765433211 12223333345677889999999999999
Q ss_pred HHHHHHhc---cCCeEEeccCCCCCC---CCC--CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCC
Q 012893 231 VVETLKSR---FRKFLNVGPSTLTSP---PPV--SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGF 302 (454)
Q Consensus 231 ~~~~~~~~---~~~~~~vGp~~~~~~---~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~ 302 (454)
.++.++.. .|++++|||+..... ... ..+.++.+||+.++++++|||||||+...+..++.+++.+++..++
T Consensus 231 ~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~ 310 (475)
T PLN02167 231 AFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGC 310 (475)
T ss_pred HHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 99888654 478999999975322 111 1224689999999889999999999988899999999999999999
Q ss_pred CEEEEEcCCc------ccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccch
Q 012893 303 PFLWSFRGNA------EEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQ 376 (454)
Q Consensus 303 ~~i~~~~~~~------~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ 376 (454)
+|||+++... ...+|++|.+++.+++++++|+||..||+|++|++|||||||||++||+++|||||++|+.+||
T Consensus 311 ~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 390 (475)
T PLN02167 311 RFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQ 390 (475)
T ss_pred cEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 9999998532 1247899998888889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhceeecCcC-------CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012893 377 ALNQRIIETAWGIGVGVXG-------EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVE 449 (454)
Q Consensus 377 ~~nA~~v~~~~G~G~~~~~-------~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 449 (454)
+.||+++.+.||+|+.++. +.+++++|.++|+++|.++ +.||+||+++++++++++.+||||.+++++||+
T Consensus 391 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~ 468 (475)
T PLN02167 391 QLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFID 468 (475)
T ss_pred hhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999875444499998853 2469999999999999764 489999999999999999999999999999999
Q ss_pred HHhc
Q 012893 450 VVNM 453 (454)
Q Consensus 450 ~~~~ 453 (454)
++++
T Consensus 469 ~i~~ 472 (475)
T PLN02167 469 DLLG 472 (475)
T ss_pred HHHh
Confidence 9875
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.5e-59 Score=460.18 Aligned_cols=415 Identities=24% Similarity=0.324 Sum_probs=314.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeC--C--CCCCCCCC
Q 012893 8 TQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNV--E--SGLPEGFR 83 (454)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~--~~~~~~~~ 83 (454)
+.++|||++|+|++||++|++.||+.| ..+| ++|||++++.+...+.... ..+ .+++|..+ | ++++.+.+
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~L--as~G--~~VT~vtt~~~~~~i~~~~-~~~-~~i~~~~i~lP~~dGLP~g~e 75 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKL--AEKG--HRVTFFLPKKAHKQLQPLN-LFP-DSIVFEPLTLPPVDGLPFGAE 75 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHH--HhCC--CEEEEEeCCchhhhhcccc-cCC-CceEEEEecCCCcCCCCCccc
Confidence 346899999999999999999999999 8899 9999999998776664431 111 24777555 3 67776643
Q ss_pred CCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHh
Q 012893 84 FTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIRE 163 (454)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 163 (454)
...+........+......+.+.++++++.. +|||||+|+ .+|+..+|+++|||++.++++++.....+.+.. .
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~---~ 149 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR---A 149 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH---h
Confidence 2222222222222333345566666666554 789999995 889999999999999999999988777665421 1
Q ss_pred hhCCCCCCCCccccCCCCCc----CCcCCC--CCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHh
Q 012893 164 IIGVNGPENQTLESIPGFSS----IRAKDL--PEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKS 237 (454)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (454)
.... ..|+++. ++..+. +.++. . ....+.+......+++.+++|||.+||+.+++..+.
T Consensus 150 ~~~~---------~~pg~p~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 214 (446)
T PLN00414 150 ELGF---------PPPDYPLSKVALRGHDANVCSLFA--N----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIER 214 (446)
T ss_pred hcCC---------CCCCCCCCcCcCchhhcccchhhc--c----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHH
Confidence 0000 1344432 121211 11111 0 112333344456678999999999999999988877
Q ss_pred cc-CCeEEeccCCCCCCC--CCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCC---
Q 012893 238 RF-RKFLNVGPSTLTSPP--PVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGN--- 311 (454)
Q Consensus 238 ~~-~~~~~vGp~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 311 (454)
.. ++++.|||+...... ....++++.+|||.+++++||||||||....+.+++.++..+++..+.+|+|++...
T Consensus 215 ~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~ 294 (446)
T PLN00414 215 QCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS 294 (446)
T ss_pred hcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc
Confidence 64 579999999743321 111234588999999999999999999999999999999999999999999999763
Q ss_pred --cccccchhhhhhhCCCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhc
Q 012893 312 --AEEQLPKGFLERTKSYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWG 388 (454)
Q Consensus 312 --~~~~l~~~~~~~~~~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G 388 (454)
....+|++|.+++.++.+|+ +|+||..||+|+++++|||||||||++||+++|||||++|+..||+.||+++++.||
T Consensus 295 ~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g 374 (446)
T PLN00414 295 STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELE 374 (446)
T ss_pred ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhC
Confidence 12358999999988888776 899999999999999999999999999999999999999999999999999976559
Q ss_pred eeecCcCC---CCCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 389 IGVGVXGE---KFTKDETVNALKQVLSSE--EGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 389 ~G~~~~~~---~~~~~~l~~av~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+|+.++.. .+++++|+++|+++|+|+ +++.+|++++++++.+.+ +|||| ..+++||+++++
T Consensus 375 ~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 375 VSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALEN 440 (446)
T ss_pred eEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHH
Confidence 99999542 489999999999999874 467899999999999744 56634 338999999864
No 21
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-58 Score=455.43 Aligned_cols=420 Identities=23% Similarity=0.405 Sum_probs=312.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCC--cEEEEEEeCCCcCccccc---cccc-cCCCCeeEEeCCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEE--EVTFSFFSTAQSNGSLFM---EKDE-LRDCKIVPYNVESGLPEGFR 83 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~--~h~V~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~i~~~~~~~~~ 83 (454)
+-|||++|++++||++|++.||+.| ..+|. ...|++++++.+...+.. .... .+ +++|+.+|++.+....
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~L--a~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~lp~~~~~~~~ 78 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTI--LSKNPSLSIHIILVPPPYQPESTATYISSVSSSFP--SITFHHLPAVTPYSSS 78 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHH--HhCCCceEEEEEEecCcchhhhhhhhhccccCCCC--CeEEEEcCCCCCCCCc
Confidence 4599999999999999999999999 66651 144444555443222111 0001 22 6999999977642221
Q ss_pred CCCC--CcchHHHHHHhchHHHHHHHHHHHHhc--CCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchh
Q 012893 84 FTGN--PREPVEHFLKATPGNFVRALEKAVAKT--GLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSD 159 (454)
Q Consensus 84 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 159 (454)
.... ....+..+.. .....+.++++.+ +.+++|||+|++.+|+..+|+++|||++.+++++++.+..+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 79 STSRHHHESLLLEILC----FSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred cccccCHHHHHHHHHH----hhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 1111 1112222222 3333334444443 234599999999999999999999999999999998887776543
Q ss_pred HHHhhhCCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhc-
Q 012893 160 IIREIIGVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSR- 238 (454)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 238 (454)
..................+||++.++..+++.....+. ....+++.+.......++.+++|||++||+..++.++..
T Consensus 155 ~~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 155 TIDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred hccccccccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC
Confidence 22111100000111112378998888888887554321 122334444445566788999999999999999988765
Q ss_pred -cCCeEEeccCCCCCCC--C-CCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCc--
Q 012893 239 -FRKFLNVGPSTLTSPP--P-VSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNA-- 312 (454)
Q Consensus 239 -~~~~~~vGp~~~~~~~--~-~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 312 (454)
.++++.|||+...... . ...+.++.+||+.++++++|||||||...++.+++++++.+++..+++|+|+++...
T Consensus 233 ~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~ 312 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL 312 (451)
T ss_pred CCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc
Confidence 2589999999743211 1 112245889999999999999999999999999999999999999999999999531
Q ss_pred ------cc-ccchhhhhhhCC-CceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHH
Q 012893 313 ------EE-QLPKGFLERTKS-YGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIE 384 (454)
Q Consensus 313 ------~~-~l~~~~~~~~~~-nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~ 384 (454)
.. .+|++|.++..+ |+++.+|+||..||.|+++++||||||+||+.||+++|||||++|+.+||+.||++++
T Consensus 313 ~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~ 392 (451)
T PLN03004 313 EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIV 392 (451)
T ss_pred cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 12 278899988865 6667799999999999999999999999999999999999999999999999999998
Q ss_pred HhhceeecCcCC---CCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 012893 385 TAWGIGVGVXGE---KFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTK 442 (454)
Q Consensus 385 ~~~G~G~~~~~~---~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 442 (454)
+.||+|+.++.+ ..++++|.++|+++|+|+ +||+++++++++.++++.+||||.+
T Consensus 393 ~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 393 DEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 766999999643 469999999999999885 8999999999999999999999864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1e-45 Score=371.23 Aligned_cols=403 Identities=19% Similarity=0.222 Sum_probs=275.5
Q ss_pred CcEEEEE-cCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc-ccccccccCCCCeeEEeCC---CCCCCCCCC
Q 012893 10 RRHVAVL-AFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS-LFMEKDELRDCKIVPYNVE---SGLPEGFRF 84 (454)
Q Consensus 10 ~~~il~~-~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~---~~~~~~~~~ 84 (454)
..||+.+ |.++.+|..-+-+++++| .+|| |+||++++...... .... .+++.+.++ +.+......
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~L--a~rG--H~VTvi~p~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEAL--AERG--HNVTVIKPTLRVYYASHLC------GNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHH--HHcC--CeEEEEecccccccccCCC------CCEEEEEcCCChHHHHHHHhh
Confidence 3578755 889999999999999999 9999 99999977431111 0011 256666653 111100000
Q ss_pred C------CCC---cchHH----HHHHhchHHH-HHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHc-CCCeEEEeCchh
Q 012893 85 T------GNP---REPVE----HFLKATPGNF-VRALEKAVAKTGLEISCLITDAFLWFAAEMAEEM-RVPWIAYWTAGP 149 (454)
Q Consensus 85 ~------~~~---~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~l-giP~v~~~~~~~ 149 (454)
. ... ..... .+...+...+ ...+.++++.-+.++|++|+|.+..++..+|+.+ ++|.|.+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 0 000 00000 1111111111 1222334431124799999998888998899999 999988877544
Q ss_pred hhhhhhhchhHHHhhhC-CCCCCCCccccCCCCCc-----CCc-CCCCCcc-------cCCCCCCcHHHHHHHh------
Q 012893 150 RSLLAHVDSDIIREIIG-VNGPENQTLESIPGFSS-----IRA-KDLPEGI-------ISGPLDSPFPIMLDKM------ 209 (454)
Q Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~-----~~~-~~l~~~~-------~~~~~~~~~~~~~~~~------ 209 (454)
....... ++ .| ....++|.+.. +.. .++..++ ..........+.....
T Consensus 170 ~~~~~~~--------~gg~p----~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~ 237 (507)
T PHA03392 170 LAENFET--------MGAVS----RHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTP 237 (507)
T ss_pred chhHHHh--------hccCC----CCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC
Confidence 3221110 01 00 11111221111 100 0000000 0000001111121122
Q ss_pred --ccccCCccEEEecCcccCCHHHHHHHHhccCCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCC---
Q 012893 210 --GKTLPKATVVAINSYEELDPIVVETLKSRFRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMIT--- 284 (454)
Q Consensus 210 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~--- 284 (454)
.+.....+++++|+.+.++.+ ++.+|++++|||+..+.....+.++++.+|++.. ++++|||||||+..
T Consensus 238 ~~~~l~~~~~l~lvns~~~~d~~-----rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~ 311 (507)
T PHA03392 238 TIRELRNRVQLLFVNVHPVFDNN-----RPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTND 311 (507)
T ss_pred CHHHHHhCCcEEEEecCccccCC-----CCCCCCeeeecccccCCCCCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCC
Confidence 112245789999999999987 8888999999999875433334466788899875 45799999999863
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcC
Q 012893 285 PPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGG 364 (454)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~G 364 (454)
.+.+.++.+++++++.+.++||..++.... ...++|+++.+|+||.++|+|+.|++||||||.||+.||+++|
T Consensus 312 ~~~~~~~~~l~a~~~l~~~viw~~~~~~~~-------~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~G 384 (507)
T PHA03392 312 MDNEFLQMLLRTFKKLPYNVLWKYDGEVEA-------INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDAL 384 (507)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCCcCc-------ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcC
Confidence 467889999999999999999999864321 1245899999999999999999999999999999999999999
Q ss_pred CCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 012893 365 VPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNF 444 (454)
Q Consensus 365 vP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 444 (454)
||||++|+.+||+.||++++++ |+|+.++..+++.++|.++|+++++|+ +|++||+++++.+++ .+.+..+..
T Consensus 385 vP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~~~t~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~---~p~~~~~~a 457 (507)
T PHA03392 385 VPMVGLPMMGDQFYNTNKYVEL-GIGRALDTVTVSAAQLVLAIVDVIENP---KYRKNLKELRHLIRH---QPMTPLHKA 457 (507)
T ss_pred CCEEECCCCccHHHHHHHHHHc-CcEEEeccCCcCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 9999999999999999999999 999999988899999999999999997 999999999999998 344566788
Q ss_pred HHHHHHHhcC
Q 012893 445 KALVEVVNMT 454 (454)
Q Consensus 445 ~~~~~~~~~~ 454 (454)
.+|+|.+++.
T Consensus 458 v~~iE~v~r~ 467 (507)
T PHA03392 458 IWYTEHVIRN 467 (507)
T ss_pred HHHHHHHHhC
Confidence 8999998763
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=6.3e-43 Score=345.82 Aligned_cols=379 Identities=21% Similarity=0.257 Sum_probs=255.5
Q ss_pred cCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHH
Q 012893 17 AFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFL 96 (454)
Q Consensus 17 ~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (454)
.+|+.||++|+++||++| +++| |+|+|++++.+.+.+++. |+.|.+++...................+.
T Consensus 2 ~~p~~Ghv~P~l~lA~~L--~~~G--h~V~~~~~~~~~~~v~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEEL--VARG--HRVTYATTEEFAERVEAA-------GAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCccccccccHHHHHHH--HhCC--CeEEEEeCHHHHHHHHHc-------CCEEEecCCcCccccccccccCcchHHHH
Confidence 579999999999999999 9999 999999999999999888 89999998554331111000001111122
Q ss_pred HhchHHHHHHHHHHHHhc-CCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhCCCCCCCCcc
Q 012893 97 KATPGNFVRALEKAVAKT-GLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIGVNGPENQTL 175 (454)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~-~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (454)
........+.+..+.+.. ..+||+||+|.+++++..+|+++|||+|.+++.+.... .+.+.. . +.. ....
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~-~~~~~~--~-----~~~-~~~~ 141 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE-EFEEMV--S-----PAG-EGSA 141 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc-cccccc--c-----ccc-hhhh
Confidence 222222223333333322 34899999999888999999999999998864332110 000000 0 000 0000
Q ss_pred ccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccc--------cCCccEEEecCcccCCHHHHHHHHhc-cCCeEEec
Q 012893 176 ESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKT--------LPKATVVAINSYEELDPIVVETLKSR-FRKFLNVG 246 (454)
Q Consensus 176 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~vG 246 (454)
...+... +.+ ....+.+.++..+.... ....+..+....+.+.++ .+. .++++++|
T Consensus 142 ~~~~~~~----~~~------~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~G 206 (392)
T TIGR01426 142 EEGAIAE----RGL------AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVG 206 (392)
T ss_pred hhhcccc----chh------HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeEEEC
Confidence 0000000 000 00001111111111100 011222344444444432 333 46899999
Q ss_pred cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCC
Q 012893 247 PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKS 326 (454)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 326 (454)
|+...... ...|....+++++|||++||+.......+..+++++.+.+.++++.+++.... +.+ +..++
T Consensus 207 p~~~~~~~-------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~---~~~-~~~~~ 275 (392)
T TIGR01426 207 PCIGDRKE-------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP---ADL-GELPP 275 (392)
T ss_pred CCCCCccc-------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh---hHh-ccCCC
Confidence 98765321 12477666788999999999876666788899999999999999998765321 111 22458
Q ss_pred CceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHH
Q 012893 327 YGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNA 406 (454)
Q Consensus 327 nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~a 406 (454)
|+.+.+|+|+.++|++++ ++|||||+||+.||+++|+|+|++|...||+.||+++++. |+|+.+...++++++|.++
T Consensus 276 ~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~~~~~~~l~~a 352 (392)
T TIGR01426 276 NVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPEEVTAEKLREA 352 (392)
T ss_pred CeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEeccccCCHHHHHHH
Confidence 999999999999999887 9999999999999999999999999999999999999999 9999998888999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 407 LKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 407 v~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
|.++++|+ +|++++++++++++.. + ......++++.+.
T Consensus 353 i~~~l~~~---~~~~~~~~l~~~~~~~----~-~~~~aa~~i~~~~ 390 (392)
T TIGR01426 353 VLAVLSDP---RYAERLRKMRAEIREA----G-GARRAADEIEGFL 390 (392)
T ss_pred HHHHhcCH---HHHHHHHHHHHHHHHc----C-CHHHHHHHHHHhh
Confidence 99999997 8999999999999872 2 3355556655554
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=9.5e-44 Score=353.14 Aligned_cols=385 Identities=16% Similarity=0.120 Sum_probs=251.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCC----
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTG---- 86 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 86 (454)
|||+|+++|+.||++|+++||++| +++| |+|+|++++.+...+++. |++|+++++.+........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L--~~rG--h~V~~~t~~~~~~~v~~~-------G~~~~~~~~~~~~~~~~~~~~~~ 69 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWAL--RAAG--HEVRVATPPEFADLVEAA-------GLEFVPVGGDPDELLASPERNAG 69 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHH--HHCC--CeEEEeeCHhHHHHHHHc-------CCceeeCCCCHHHHHhhhhhccc
Confidence 699999999999999999999999 9999 999999999888888877 8999999754432111000
Q ss_pred ---CCcchHHHHHHhchHHHHHHHHHHHHhc-CCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHH
Q 012893 87 ---NPREPVEHFLKATPGNFVRALEKAVAKT-GLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIR 162 (454)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 162 (454)
..................+.+..+.+.. ..+||+||+|.+.+++..+|+++|||+|.+++++........++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~--- 146 (401)
T cd03784 70 LLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL--- 146 (401)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc---
Confidence 0111121222222233333444444333 359999999998889999999999999999876644322111100
Q ss_pred hhhCCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhcccc-----CCccEEEecCcccCCHHHHHHHHh
Q 012893 163 EIIGVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTL-----PKATVVAINSYEELDPIVVETLKS 237 (454)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~ 237 (454)
.......+..+........................ ...+..+....+.+.+. ..+
T Consensus 147 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 206 (401)
T cd03784 147 ----------------GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP----PPD 206 (401)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC----CCC
Confidence 00000000000000000000000011111111000 00111111112222211 123
Q ss_pred ccCCeEEec-cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCC-HHHHHHHHHHHHhcCCCEEEEEcCCcccc
Q 012893 238 RFRKFLNVG-PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPP-RAEVIALAEALEAIGFPFLWSFRGNAEEQ 315 (454)
Q Consensus 238 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 315 (454)
+.++..++| ++...+. ....++++..|++. ++++|||++||+.... ...+..+++++...+.++||++++.....
T Consensus 207 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~ 283 (401)
T cd03784 207 WPRFDLVTGYGFRDVPY-NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA 283 (401)
T ss_pred ccccCcEeCCCCCCCCC-CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc
Confidence 345667776 3333222 22233445566654 5689999999997644 46778899999989999999998764321
Q ss_pred cchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcC
Q 012893 316 LPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXG 395 (454)
Q Consensus 316 l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 395 (454)
...++|+.+.+|+||..+|++++ +||||||+||++||+++|||+|++|+..||+.||+++++. |+|+.++.
T Consensus 284 ------~~~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l~~ 354 (401)
T cd03784 284 ------EDLPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-GAGPALDP 354 (401)
T ss_pred ------cCCCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-CCCCCCCc
Confidence 12458999999999999999977 9999999999999999999999999999999999999999 99999988
Q ss_pred CCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 012893 396 EKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEV 450 (454)
Q Consensus 396 ~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 450 (454)
..++.++|.++|++++++ .++++++++++++++ ......+..+++.
T Consensus 355 ~~~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~-----~~g~~~~~~~ie~ 400 (401)
T cd03784 355 RELTAERLAAALRRLLDP----PSRRRAAALLRRIRE-----EDGVPSAADVIER 400 (401)
T ss_pred ccCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh-----ccCHHHHHHHHhh
Confidence 778999999999999986 566777778777765 2334555555554
No 25
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.3e-45 Score=376.38 Aligned_cols=394 Identities=25% Similarity=0.331 Sum_probs=221.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcc-
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPRE- 90 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 90 (454)
|||++|. ++||+.++..|+++| .+|| |+||++++.... .+.... . ..+++..++.+.+...........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L--~~rG--H~VTvl~~~~~~-~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEEL--AERG--HNVTVLTPSPSS-SLNPSK--P--SNIRFETYPDPYPEEEFEEIFPEFI 71 (500)
T ss_dssp -----------SHHHHHHHHHHH--HHH---TTSEEEHHHHHH-T----------S-CCEEEE-----TT------TTHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHH--HhcC--CceEEEEeeccc-cccccc--c--cceeeEEEcCCcchHHHhhhhHHHH
Confidence 6888885 889999999999999 8999 999999885321 121110 0 255665555444332211110100
Q ss_pred -----------hHHHHHHhc---hHHHHHHHH---------HHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCc
Q 012893 91 -----------PVEHFLKAT---PGNFVRALE---------KAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 91 -----------~~~~~~~~~---~~~~~~~~~---------~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~ 147 (454)
......... .......++ +.++. .++|++|+|.+..++..+|+.+|+|.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 72 SKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 000000000 000011111 11222 26899999988888999999999999886543
Q ss_pred hhhhhhhhhchhHHHhhhCCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHH-----H---------------
Q 012893 148 GPRSLLAHVDSDIIREIIGVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIML-----D--------------- 207 (454)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~--------------- 207 (454)
.......... .+.+ ....++|....-....+..+- +..+.+..+. .
T Consensus 150 ~~~~~~~~~~-------~g~p----~~psyvP~~~s~~~~~msf~~---Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (500)
T PF00201_consen 150 TPMYDLSSFS-------GGVP----SPPSYVPSMFSDFSDRMSFWQ---RIKNFLFYLYFRFIFRYFFSPQDKLYKKYFG 215 (500)
T ss_dssp CSCSCCTCCT-------SCCC----TSTTSTTCBCCCSGTTSSSST-----TTSHHHHHHHHHHHHGGGS-TTS-EEESS
T ss_pred cccchhhhhc-------cCCC----CChHHhccccccCCCccchhh---hhhhhhhhhhhccccccchhhHHHHHhhhcc
Confidence 2221110000 0000 000111111000000000000 0000000000 0
Q ss_pred ---HhccccCCccEEEecCcccCCHHHHHHHHhccCCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCC
Q 012893 208 ---KMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMIT 284 (454)
Q Consensus 208 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~ 284 (454)
...+.+...+++++|+.+.++.+ ++..|+++++|++......+. +.++..|++...++++|||||||+..
T Consensus 216 ~~~~~~~~~~~~~l~l~ns~~~ld~p-----rp~~p~v~~vGgl~~~~~~~l--~~~~~~~~~~~~~~~vv~vsfGs~~~ 288 (500)
T PF00201_consen 216 FPFSFRELLSNASLVLINSHPSLDFP-----RPLLPNVVEVGGLHIKPAKPL--PEELWNFLDSSGKKGVVYVSFGSIVS 288 (500)
T ss_dssp -GGGCHHHHHHHHHCCSSTEEE---------HHHHCTSTTGCGC-S----TC--HHHHHHHTSTTTTTEEEEEE-TSSST
T ss_pred cccccHHHHHHHHHHhhhccccCcCC-----cchhhcccccCcccccccccc--ccccchhhhccCCCCEEEEecCcccc
Confidence 00111223566788888888876 888899999999987655543 44677788875677999999999975
Q ss_pred C-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHc
Q 012893 285 P-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITG 363 (454)
Q Consensus 285 ~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~ 363 (454)
. +.+..+.+++++++.+.++||...+.....+ ++|+++.+|+||.++|.|+++++||||||+||+.||+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l--------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~ 360 (500)
T PF00201_consen 289 SMPEEKLKEIAEAFENLPQRFIWKYEGEPPENL--------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYH 360 (500)
T ss_dssp T-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHH--------HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhhCCCcccccccccccccc--------cceEEEeccccchhhhhcccceeeeeccccchhhhhhhc
Confidence 4 3445788999999999999999998543333 389999999999999999999999999999999999999
Q ss_pred CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 012893 364 GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKN 443 (454)
Q Consensus 364 GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 443 (454)
|||||++|+.+||+.||.++++. |+|+.++..+++.++|.++|+++|+|+ +|++||+++++.+++. ..+..+.
T Consensus 361 gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~~---~y~~~a~~ls~~~~~~---p~~p~~~ 433 (500)
T PF00201_consen 361 GVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLENP---SYKENAKRLSSLFRDR---PISPLER 433 (500)
T ss_dssp T--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHSH---HHHHHHHHHHHTTT------------
T ss_pred cCCccCCCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhcC---CCCHHHH
Confidence 99999999999999999999999 999999988899999999999999997 9999999999999984 3556688
Q ss_pred HHHHHHHHhc
Q 012893 444 FKALVEVVNM 453 (454)
Q Consensus 444 ~~~~~~~~~~ 453 (454)
+.+|+|.++|
T Consensus 434 ~~~~ie~v~~ 443 (500)
T PF00201_consen 434 AVWWIEYVAR 443 (500)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 8899998876
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-43 Score=341.97 Aligned_cols=387 Identities=18% Similarity=0.170 Sum_probs=251.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCC-CCC-CCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESG-LPE-GFRFTGN 87 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~~~~~~ 87 (454)
+|||+|+..|+.||++|+++||++| +++| |+|+|+|++.+.+.++++ |+.|...+.. .+. ..+...+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL--~~~g--heV~~~~~~~~~~~ve~a-------g~~f~~~~~~~~~~~~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKEL--RRRG--HEVVFASTGKFKEFVEAA-------GLAFVAYPIRDSELATEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHH--HhcC--CeEEEEeCHHHHHHHHHh-------CcceeeccccCChhhhhhhhhh
Confidence 5899999999999999999999999 9999 999999999999999999 7666666522 111 1111111
Q ss_pred CcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhch-h--HHHhh
Q 012893 88 PREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDS-D--IIREI 164 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~-~--~~~~~ 164 (454)
....+............+. .+.+.+. .||+++.|...+.+ +++...++|++.......+........ . ...+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~-~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (406)
T COG1819 70 GVKSFRRLLQQFKKLIREL-LELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGK 145 (406)
T ss_pred ccchhHHHhhhhhhhhHHH-HHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccc
Confidence 1111111111111112222 2233333 89999999665555 899999999998766554433322110 0 00000
Q ss_pred hCCCCCCCCccccCCCCCcCCcCCCCC----ccc---CCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHh
Q 012893 165 IGVNGPENQTLESIPGFSSIRAKDLPE----GII---SGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKS 237 (454)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~l~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (454)
++.+... + .+.. +.+..... ... .........+ +...+.......+...+...++. ..
T Consensus 146 ~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~ 210 (406)
T COG1819 146 LPIPLYP---L--PPRL--VRPLIFARSWLPKLVVRRNLGLELGLPN----IRRLFASGPLLEIAYTDVLFPPG----DR 210 (406)
T ss_pred ccccccc---c--Chhh--ccccccchhhhhhhhhhhhccccccccc----hHHHhcCCCCccccccccccCCC----CC
Confidence 0000000 0 0000 00000000 000 0000000000 00001111111111111111110 11
Q ss_pred ccCCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccc
Q 012893 238 RFRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLP 317 (454)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 317 (454)
.+-...++||+....... ...| ...++++||+|+||+... .++++.+++++.+.+.++|+.+++... ..
T Consensus 211 ~p~~~~~~~~~~~~~~~~------~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~~-~~- 279 (406)
T COG1819 211 LPFIGPYIGPLLGEAANE------LPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGARD-TL- 279 (406)
T ss_pred CCCCcCcccccccccccc------Ccch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccccc-cc-
Confidence 122566667666554432 2233 335678999999999876 889999999999999999999987221 11
Q ss_pred hhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCC
Q 012893 318 KGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEK 397 (454)
Q Consensus 318 ~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 397 (454)
...++|+++.+|+||.++|++++ +||||||+||++|||++|||+|++|...||+.||.+++++ |+|+.++.+.
T Consensus 280 ----~~~p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~~~ 352 (406)
T COG1819 280 ----VNVPDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPFEE 352 (406)
T ss_pred ----ccCCCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCccc
Confidence 23568999999999999999988 9999999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 398 FTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 398 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
++.+.|+++|+++|+|+ +|+++++++++.+++.. +.+.+.++++++.
T Consensus 353 l~~~~l~~av~~vL~~~---~~~~~~~~~~~~~~~~~-----g~~~~a~~le~~~ 399 (406)
T COG1819 353 LTEERLRAAVNEVLADD---SYRRAAERLAEEFKEED-----GPAKAADLLEEFA 399 (406)
T ss_pred CCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhhcc-----cHHHHHHHHHHHH
Confidence 99999999999999997 99999999999999942 2566777777654
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.1e-38 Score=323.47 Aligned_cols=422 Identities=28% Similarity=0.417 Sum_probs=258.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccc-cccc-cC---CCCeeEEeCCCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFM-EKDE-LR---DCKIVPYNVESGLPEGFRF 84 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~-~~~~-~~---~~~~~~~~i~~~~~~~~~~ 84 (454)
..+++++++|++||++|++.+|++| .++| |+||++++......... .... .. ...+.+...+++++.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L--~~~g--h~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRL--AERG--HNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWED 80 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHH--HHcC--CceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHH
Confidence 5789999999999999999999999 8899 99999999766554322 1000 00 0011111222233332211
Q ss_pred CC-CCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcC-CCeEEEeCchhhhhhhhhchhHHH
Q 012893 85 TG-NPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMR-VPWIAYWTAGPRSLLAHVDSDIIR 162 (454)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~ 162 (454)
.. ........+...+...+.+....+......++|++|+|.+..+...+|...+ |+...+.+..........+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~- 159 (496)
T KOG1192|consen 81 DDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc-
Confidence 00 0111123333334334444333333322234999999987656656665654 88877776655543332211111
Q ss_pred hhhCCCCCCC--CccccCCCCC-cCCcCCCCCcccCCCCCCcHHHHHHHhc-----------cccCCccEEEecCcccCC
Q 012893 163 EIIGVNGPEN--QTLESIPGFS-SIRAKDLPEGIISGPLDSPFPIMLDKMG-----------KTLPKATVVAINSYEELD 228 (454)
Q Consensus 163 ~~~~~~~~~~--~~~~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~ 228 (454)
..+...... .... +++.. .+....++.................... ......+..++++.+.+.
T Consensus 160 -~~p~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~ 237 (496)
T KOG1192|consen 160 -YVPSPFSLSSGDDMS-FPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLD 237 (496)
T ss_pred -ccCcccCccccccCc-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccC
Confidence 000000000 0000 00000 0000000000000000000001111110 112234455556555544
Q ss_pred HHHHHHHHhccCCeEEeccCCCCCCCCCCCCCCccchhccCCCC--cEEEEeeCCCC---CCCHHHHHHHHHHHHhc-CC
Q 012893 229 PIVVETLKSRFRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENA--SVIYISFGSMI---TPPRAEVIALAEALEAI-GF 302 (454)
Q Consensus 229 ~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~~~~~~-~~ 302 (454)
.. .++..+++++|||+.......... ....|++..+.. ++|||||||+. .++......++.+++.. +.
T Consensus 238 ~~----~~~~~~~v~~IG~l~~~~~~~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~ 311 (496)
T KOG1192|consen 238 FE----PRPLLPKVIPIGPLHVKDSKQKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGV 311 (496)
T ss_pred CC----CCCCCCCceEECcEEecCcccccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCc
Confidence 41 133458999999999874332211 245688876665 89999999998 68999999999999998 88
Q ss_pred CEEEEEcCCcccccchhhhhhhCCCceEeeccChHhh-hcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHH
Q 012893 303 PFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKI-LEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQR 381 (454)
Q Consensus 303 ~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~l-l~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~ 381 (454)
.|+|.........+++++.++.++||.+.+|+||.++ |.|+++++||||||+||++|++++|||||++|+++||+.||+
T Consensus 312 ~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~ 391 (496)
T KOG1192|consen 312 TFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNAR 391 (496)
T ss_pred eEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHH
Confidence 9999999864332334433222368888899999998 599999999999999999999999999999999999999999
Q ss_pred HHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 382 IIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 382 ~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
++++. |.|..+...+.+.+.+.+++.++++++ +|+++++++++.+++ .+.+. +....|++.+.
T Consensus 392 ~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~~---~y~~~~~~l~~~~~~---~p~~~-~~~~~~~e~~~ 454 (496)
T KOG1192|consen 392 LLVRH-GGGGVLDKRDLVSEELLEAIKEILENE---EYKEAAKRLSEILRD---QPISP-ELAVKWVEFVA 454 (496)
T ss_pred HHHhC-CCEEEEehhhcCcHHHHHHHHHHHcCh---HHHHHHHHHHHHHHc---CCCCH-HHHHHHHHHHH
Confidence 99999 555555444455555999999999997 999999999999887 34555 66665555544
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=3.7e-28 Score=234.95 Aligned_cols=320 Identities=15% Similarity=0.149 Sum_probs=209.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc--ccccccccCCCCeeEEeCCC-CCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS--LFMEKDELRDCKIVPYNVES-GLPEGFRFTG 86 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~ 86 (454)
|.||+++..++.||++|.+++|++| +++| |+|+|++.....+. +.+. |+++..++. ++...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l--~~~g--~~v~~vg~~~~~e~~l~~~~-------g~~~~~~~~~~l~~~----- 64 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYL--KEDN--WDISYIGSHQGIEKTIIEKE-------NIPYYSISSGKLRRY----- 64 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHH--HhCC--CEEEEEECCCccccccCccc-------CCcEEEEeccCcCCC-----
Confidence 3489999999999999999999999 8899 99999997655432 2233 788887762 22111
Q ss_pred CCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcC--chhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhh
Q 012893 87 NPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDA--FLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREI 164 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (454)
.....+....... ...... ..+++.. +||+|++.. .+..+..+|..+|+|++......
T Consensus 65 ~~~~~~~~~~~~~-~~~~~~-~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~---------------- 124 (352)
T PRK12446 65 FDLKNIKDPFLVM-KGVMDA-YVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM---------------- 124 (352)
T ss_pred chHHHHHHHHHHH-HHHHHH-HHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC----------------
Confidence 0111222222211 122221 2345554 999999873 44467789999999998864211
Q ss_pred hCCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhcc--CCe
Q 012893 165 IGVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRF--RKF 242 (454)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~ 242 (454)
.||+. .+++.++.. .++ .++++ . ...+ .++
T Consensus 125 -------------~~g~~--------------------nr~~~~~a~------~v~-~~f~~---~-----~~~~~~~k~ 156 (352)
T PRK12446 125 -------------TPGLA--------------------NKIALRFAS------KIF-VTFEE---A-----AKHLPKEKV 156 (352)
T ss_pred -------------CccHH--------------------HHHHHHhhC------EEE-EEccc---h-----hhhCCCCCe
Confidence 33332 344444422 232 23332 1 2222 478
Q ss_pred EEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCH-HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhh
Q 012893 243 LNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPR-AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFL 321 (454)
Q Consensus 243 ~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 321 (454)
+++|+-..+...... .+.....++..+++++|+|..||.+.... +.+..++..+. .+.+++|++|.+..+.. .
T Consensus 157 ~~tG~Pvr~~~~~~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~~~~---~- 230 (352)
T PRK12446 157 IYTGSPVREEVLKGN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNLDDS---L- 230 (352)
T ss_pred EEECCcCCccccccc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchHHHH---H-
Confidence 999954444322111 11111223334567899999999986443 23334444443 24899999997642211 1
Q ss_pred hhhCCCceEeecc-C-hHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccc-----cchhHHHHHHHHhhceeecCc
Q 012893 322 ERTKSYGKVVPWA-P-QLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVF-----ADQALNQRIIETAWGIGVGVX 394 (454)
Q Consensus 322 ~~~~~nv~v~~~v-p-~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~-----~DQ~~nA~~v~~~~G~G~~~~ 394 (454)
.. ..++.+.+|+ + ...++.+++ ++|||||.+|+.|++++|+|+|++|+. .||..||.++++. |+|..+.
T Consensus 231 ~~-~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l~ 306 (352)
T PRK12446 231 QN-KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVLY 306 (352)
T ss_pred hh-cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEcc
Confidence 11 1355667887 4 457888887 999999999999999999999999984 5899999999999 9999998
Q ss_pred CCCCCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 012893 395 GEKFTKDETVNALKQVLSSEEGKRMRENVGA 425 (454)
Q Consensus 395 ~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~ 425 (454)
..+++++.|.+++.++++|+ +.|++++++
T Consensus 307 ~~~~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 307 EEDVTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred hhcCCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 88899999999999999875 245554443
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.95 E-value=1.9e-26 Score=221.77 Aligned_cols=308 Identities=18% Similarity=0.196 Sum_probs=196.0
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCc
Q 012893 11 RHVAVLAFP-FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPR 89 (454)
Q Consensus 11 ~~il~~~~~-~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 89 (454)
|||+|...+ +.||+.++++|+++| + | |+|+|++.....+.+... +.+..+++-.........+..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r--g--~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R--G--HEVTFITSGPAPEFLKPR--------FPVREIPGLGPIQENGRLDRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c--c--CceEEEEcCCcHHHhccc--------cCEEEccCceEeccCCccchH
Confidence 799998887 999999999999999 4 9 999999997655444333 455556422111111111111
Q ss_pred chHHHHHHhchHHHHHHHHHHHHhc-CCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhCCC
Q 012893 90 EPVEHFLKATPGNFVRALEKAVAKT-GLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIGVN 168 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (454)
......... ...+...++++.+.+ ..+||+||+|. .+.+..+|+..|||++.+...........
T Consensus 67 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~~------------- 131 (318)
T PF13528_consen 67 KTVRNNIRW-LARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPNF------------- 131 (318)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccccC-------------
Confidence 222221111 112222233322222 34999999994 44566899999999999876543221000
Q ss_pred CCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccc--cCCccEEEecCcccCCHHHHHHHHhccCCeEEec
Q 012893 169 GPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKT--LPKATVVAINSYEELDPIVVETLKSRFRKFLNVG 246 (454)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG 246 (454)
. .+ .......+..+.... ...++..+.-++. .. .....++.++|
T Consensus 132 -----~---~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-------~~~~~~~~~~~ 177 (318)
T PF13528_consen 132 -----W---LP------------------WDQDFGRLIERYIDRYHFPPADRRLALSFY-PP-------LPPFFRVPFVG 177 (318)
T ss_pred -----C---cc------------------hhhhHHHHHHHhhhhccCCcccceecCCcc-cc-------ccccccccccC
Confidence 0 00 001112222222221 2333334433333 11 11223567888
Q ss_pred cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcC-CCEEEEEcCCcccccchhhhhhhC
Q 012893 247 PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIG-FPFLWSFRGNAEEQLPKGFLERTK 325 (454)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~~~~~ 325 (454)
|+..+...... . .+.+.|+|++|+.... .+++.++..+ +++++. |..... ...
T Consensus 178 p~~~~~~~~~~---------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~~--------~~~ 231 (318)
T PF13528_consen 178 PIIRPEIRELP---------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAAD--------PRP 231 (318)
T ss_pred chhcccccccC---------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCccc--------ccC
Confidence 88765433221 0 2345899999988632 5667777655 677766 544211 124
Q ss_pred CCceEeecc--ChHhhhcccCcceEEecCCchhHHHHHHcCCCeecccc--ccchhHHHHHHHHhhceeecCcCCCCCHH
Q 012893 326 SYGKVVPWA--PQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPV--FADQALNQRIIETAWGIGVGVXGEKFTKD 401 (454)
Q Consensus 326 ~nv~v~~~v--p~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~--~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 401 (454)
+|+.+.++. +...+|..|+ ++|||||+||++|++++|+|+|++|. ..||..||.+++++ |+|+.++..+++++
T Consensus 232 ~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~~~~~~~ 308 (318)
T PF13528_consen 232 GNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQEDLTPE 308 (318)
T ss_pred CCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEcccccCCHH
Confidence 899999876 4568897777 99999999999999999999999999 67999999999999 99999998899999
Q ss_pred HHHHHHHHH
Q 012893 402 ETVNALKQV 410 (454)
Q Consensus 402 ~l~~av~~v 410 (454)
.|.++|+++
T Consensus 309 ~l~~~l~~~ 317 (318)
T PF13528_consen 309 RLAEFLERL 317 (318)
T ss_pred HHHHHHhcC
Confidence 999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=2.2e-25 Score=213.04 Aligned_cols=311 Identities=18% Similarity=0.200 Sum_probs=205.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcE-EEEEEeCCCcCcc-ccccccccCCCCeeEEeCCCCCCCCCCCCCCC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEV-TFSFFSTAQSNGS-LFMEKDELRDCKIVPYNVESGLPEGFRFTGNP 88 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h-~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (454)
++|+++..++.||++|.++|+++| .++| + +|.+..+....+. +... .++.++.|+.+-......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l--~~~g--~~~v~~~~~~~~~e~~l~~~------~~~~~~~I~~~~~~~~~~---- 66 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEEL--AKRG--WEQVIVLGTGDGLEAFLVKQ------YGIEFELIPSGGLRRKGS---- 66 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHH--HhhC--ccEEEEecccccceeeeccc------cCceEEEEecccccccCc----
Confidence 478999999999999999999999 9999 8 6888876655543 3222 277887776333222111
Q ss_pred cchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEc--CchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhC
Q 012893 89 REPVEHFLKATPGNFVRALEKAVAKTGLEISCLITD--AFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIG 166 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d--~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (454)
...+...+... ..+.+ ..++++.. +||+||+. +.+..+..+|..+|||++..-.
T Consensus 67 ~~~~~~~~~~~-~~~~~-a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq-------------------- 122 (357)
T COG0707 67 LKLLKAPFKLL-KGVLQ-ARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ-------------------- 122 (357)
T ss_pred HHHHHHHHHHH-HHHHH-HHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEec--------------------
Confidence 11121111111 11112 24455555 99999984 5667888899999999999642
Q ss_pred CCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhcc--CCeEE
Q 012893 167 VNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRF--RKFLN 244 (454)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~ 244 (454)
+..||+. .+++.+... .+. .+++.. .... .++++
T Consensus 123 ---------n~~~G~a--------------------nk~~~~~a~------~V~-~~f~~~--------~~~~~~~~~~~ 158 (357)
T COG0707 123 ---------NAVPGLA--------------------NKILSKFAK------KVA-SAFPKL--------EAGVKPENVVV 158 (357)
T ss_pred ---------CCCcchh--------------------HHHhHHhhc------eee-eccccc--------cccCCCCceEE
Confidence 1144443 233333322 222 222321 1112 26889
Q ss_pred ec-cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCH-HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhh
Q 012893 245 VG-PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPR-AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLE 322 (454)
Q Consensus 245 vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 322 (454)
+| |+..+... .+.. .+ . ...+.++++|+|..||++...- +.+..+...+.+ +.++++.+|.+........+.
T Consensus 159 tG~Pvr~~~~~-~~~~-~~-~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~~~~~~~~~- 232 (357)
T COG0707 159 TGIPVRPEFEE-LPAA-EV-R-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDLEELKSAYN- 232 (357)
T ss_pred ecCcccHHhhc-cchh-hh-h-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchHHHHHHHHh-
Confidence 99 67665443 2111 10 1 1111267899999999986432 222333334433 589999999875333322221
Q ss_pred hhCCC-ceEeeccChH-hhhcccCcceEEecCCchhHHHHHHcCCCeeccccc----cchhHHHHHHHHhhceeecCcCC
Q 012893 323 RTKSY-GKVVPWAPQL-KILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVF----ADQALNQRIIETAWGIGVGVXGE 396 (454)
Q Consensus 323 ~~~~n-v~v~~~vp~~-~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~----~DQ~~nA~~v~~~~G~G~~~~~~ 396 (454)
..+ +.+.+|.+.+ .+++.+| ++||++|.+|+.|+++.|+|+|.+|.. .||..||..+++. |+|..++..
T Consensus 233 --~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~ 307 (357)
T COG0707 233 --ELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQS 307 (357)
T ss_pred --hcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEeccc
Confidence 123 6777998865 6776666 999999999999999999999999973 4899999999999 999999999
Q ss_pred CCCHHHHHHHHHHHhcCc
Q 012893 397 KFTKDETVNALKQVLSSE 414 (454)
Q Consensus 397 ~~~~~~l~~av~~vl~~~ 414 (454)
+++++++.+.|.++++++
T Consensus 308 ~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 308 ELTPEKLAELILRLLSNP 325 (357)
T ss_pred cCCHHHHHHHHHHHhcCH
Confidence 999999999999999986
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=2.8e-23 Score=199.58 Aligned_cols=304 Identities=13% Similarity=0.110 Sum_probs=172.2
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCee-EEeCCCCCCCCCCCCCCCc
Q 012893 12 HVAVLAFP-FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIV-PYNVESGLPEGFRFTGNPR 89 (454)
Q Consensus 12 ~il~~~~~-~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~ 89 (454)
||++...+ +.||+.|.++|+++| ++ | |+|+|++.......+... ++. +..+| ++....... ..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L--~~-g--~ev~~~~~~~~~~~~~~~-------~~~~~~~~p-~~~~~~~~~--~~ 65 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEAL--KN-D--YEVSYIASGRSKNYISKY-------GFKVFETFP-GIKLKGEDG--KV 65 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHH--hC-C--CeEEEEEcCCHHHhhhhh-------cCcceeccC-CceEeecCC--cC
Confidence 68887777 559999999999999 88 9 999999987644344443 444 33333 111110000 00
Q ss_pred chHHHHHH--hc-hHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhC
Q 012893 90 EPVEHFLK--AT-PGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIG 166 (454)
Q Consensus 90 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (454)
.....+.. .. ...+.+. .++++.. +||+||+| ..+.+..+|+.+|||++.+..+....
T Consensus 66 ~~~~~l~~~~~~~~~~~~~~-~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~--------------- 126 (321)
T TIGR00661 66 NIVKTLRNKEYSPKKAIRRE-INIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR--------------- 126 (321)
T ss_pred cHHHHHHhhccccHHHHHHH-HHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc---------------
Confidence 11111110 11 1223332 2344544 99999999 66667799999999999887532111
Q ss_pred CCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeE--E
Q 012893 167 VNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFL--N 244 (454)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ 244 (454)
.|+.. +. ......+.+..+ ...++...+..++... ...|.+. .
T Consensus 127 -----------~~~~~----~~---------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~p~~~~~~ 171 (321)
T TIGR00661 127 -----------YPLKT----DL---------IVYPTMAALRIF---NERCERFIVPDYPFPY--------TICPKIIKNM 171 (321)
T ss_pred -----------CCccc----ch---------hHHHHHHHHHHh---ccccceEeeecCCCCC--------CCCccccccC
Confidence 11110 00 000001111111 1122222222222111 0011110 0
Q ss_pred eccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhh
Q 012893 245 VGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERT 324 (454)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 324 (454)
.+|... .+...|... +.+.|+|.+|+.. ...+++.+.+.+. +.++++.... ..+ ..
T Consensus 172 ~~~~~~---------~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~--~~~----~~ 227 (321)
T TIGR00661 172 EGPLIR---------YDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV--AKN----SY 227 (321)
T ss_pred CCcccc---------hhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC--Ccc----cc
Confidence 011111 111122221 2356777777754 1344666766543 2333332211 111 23
Q ss_pred CCCceEeeccC--hHhhhcccCcceEEecCCchhHHHHHHcCCCeecccccc--chhHHHHHHHHhhceeecCcCCCCCH
Q 012893 325 KSYGKVVPWAP--QLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFA--DQALNQRIIETAWGIGVGVXGEKFTK 400 (454)
Q Consensus 325 ~~nv~v~~~vp--~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~--DQ~~nA~~v~~~~G~G~~~~~~~~~~ 400 (454)
++|+.+.+|.| ...+|..|+ ++|||||++|++||+++|+|+|++|..+ ||..||..++++ |+|+.++..++
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~~-- 302 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKEL-- 302 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhhH--
Confidence 47999999997 457777776 9999999999999999999999999854 899999999999 99999987655
Q ss_pred HHHHHHHHHHhcCc
Q 012893 401 DETVNALKQVLSSE 414 (454)
Q Consensus 401 ~~l~~av~~vl~~~ 414 (454)
++.+++.++++|+
T Consensus 303 -~~~~~~~~~~~~~ 315 (321)
T TIGR00661 303 -RLLEAILDIRNMK 315 (321)
T ss_pred -HHHHHHHhccccc
Confidence 5556666677665
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.4e-19 Score=176.96 Aligned_cols=343 Identities=16% Similarity=0.144 Sum_probs=200.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC--ccccccccccCCCCeeEEeCCC-CCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN--GSLFMEKDELRDCKIVPYNVES-GLPEGFRFTG 86 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~ 86 (454)
||||+|+..+..||...++.|+++| .++| |+|++++.+... +..+.. |++++.++. ++...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L--~~~g--~ev~vv~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~----- 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEEL--KKRG--WEVLYLGTARGMEARLVPKA-------GIEFHFIPSGGLRRK----- 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHH--HhCC--CEEEEEECCCchhhhccccC-------CCcEEEEeccCcCCC-----
Confidence 4899999999899999999999999 8999 999999986531 122222 677776641 11111
Q ss_pred CCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcC--chhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhh
Q 012893 87 NPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDA--FLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREI 164 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 164 (454)
.....+...... ...+.. +.+++++. +||+|++.. ..+.+..++...++|+|......
T Consensus 65 ~~~~~l~~~~~~-~~~~~~-~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------- 124 (357)
T PRK00726 65 GSLANLKAPFKL-LKGVLQ-ARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA---------------- 124 (357)
T ss_pred ChHHHHHHHHHH-HHHHHH-HHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC----------------
Confidence 011111111111 112222 23344443 899999985 24456677888999998642100
Q ss_pred hCCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeEE
Q 012893 165 IGVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLN 244 (454)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 244 (454)
.++ ...++..+. ++.++..+ +.. + ......++.+
T Consensus 125 -------------~~~--------------------~~~r~~~~~------~d~ii~~~-~~~----~--~~~~~~~i~v 158 (357)
T PRK00726 125 -------------VPG--------------------LANKLLARF------AKKVATAF-PGA----F--PEFFKPKAVV 158 (357)
T ss_pred -------------Ccc--------------------HHHHHHHHH------hchheECc-hhh----h--hccCCCCEEE
Confidence 110 012222222 23333322 111 0 0112257888
Q ss_pred eccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCC--CEEEEEcCCcccccchhhhh
Q 012893 245 VGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGF--PFLWSFRGNAEEQLPKGFLE 322 (454)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~l~~~~~~ 322 (454)
+|+............. .. +...++.++|++..|+.. .......+.+++.+... ..++.+|....+.+.+.. +
T Consensus 159 i~n~v~~~~~~~~~~~--~~-~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~-~ 232 (357)
T PRK00726 159 TGNPVREEILALAAPP--AR-LAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAY-A 232 (357)
T ss_pred ECCCCChHhhcccchh--hh-ccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHh-h
Confidence 8855443221110000 01 122234456766555543 12222233355544322 445666665432222222 1
Q ss_pred hhCCCceEeeccC-hHhhhcccCcceEEecCCchhHHHHHHcCCCeecccc----ccchhHHHHHHHHhhceeecCcCCC
Q 012893 323 RTKSYGKVVPWAP-QLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPV----FADQALNQRIIETAWGIGVGVXGEK 397 (454)
Q Consensus 323 ~~~~nv~v~~~vp-~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~----~~DQ~~nA~~v~~~~G~G~~~~~~~ 397 (454)
..-++.+.+|+. ...++..++ ++|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|..++..+
T Consensus 233 -~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~~ 308 (357)
T PRK00726 233 -AGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQSD 308 (357)
T ss_pred -cCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEccc
Confidence 222477789984 568998877 99999999999999999999999997 36899999999999 9999998877
Q ss_pred CCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 398 FTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 398 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
++++.|.+++.++++|+ +++++..+-+.+.. ...+..+-++.+.+.+
T Consensus 309 ~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 309 LTPEKLAEKLLELLSDP---ERLEAMAEAARALG----KPDAAERLADLIEELA 355 (357)
T ss_pred CCHHHHHHHHHHHHcCH---HHHHHHHHHHHhcC----CcCHHHHHHHHHHHHh
Confidence 78999999999999986 44443333333222 2344444444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=2.8e-18 Score=167.29 Aligned_cols=315 Identities=17% Similarity=0.147 Sum_probs=186.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc-ccccccccCCCCeeEEeCCC-CCCCCCCCCCCCc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS-LFMEKDELRDCKIVPYNVES-GLPEGFRFTGNPR 89 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~ 89 (454)
||++...++.||....+.|++.| .++| |+|++++....... .... .+++++.++. .+... ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l--~~~G--~ev~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEEL--RERG--AEVLFLGTKRGLEARLVPK------AGIPLHTIPVGGLRRK-----GSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHH--HhCC--CEEEEEECCCcchhhcccc------cCCceEEEEecCcCCC-----ChH
Confidence 68999999999999999999999 8899 99999987542211 1111 2566666642 11111 011
Q ss_pred chHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcC--chhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhCC
Q 012893 90 EPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDA--FLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIGV 167 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (454)
+.+..+... ...+.. +.+++++. +||+|+++. ..+.+..+|...|+|++......
T Consensus 66 ~~~~~~~~~-~~~~~~-~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------- 122 (350)
T cd03785 66 KKLKAPFKL-LKGVLQ-ARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------- 122 (350)
T ss_pred HHHHHHHHH-HHHHHH-HHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-------------------
Confidence 111111110 111122 33344443 899999864 34556678899999998632100
Q ss_pred CCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeEEecc
Q 012893 168 NGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLNVGP 247 (454)
Q Consensus 168 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vGp 247 (454)
.++. ..+++.+ .++.+++.+....+. -...++.++|.
T Consensus 123 ----------~~~~--------------------~~~~~~~------~~~~vi~~s~~~~~~-------~~~~~~~~i~n 159 (350)
T cd03785 123 ----------VPGL--------------------ANRLLAR------FADRVALSFPETAKY-------FPKDKAVVTGN 159 (350)
T ss_pred ----------CccH--------------------HHHHHHH------hhCEEEEcchhhhhc-------CCCCcEEEECC
Confidence 1100 1122111 134444433211110 01246777885
Q ss_pred CCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCH-HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCC
Q 012893 248 STLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPR-AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKS 326 (454)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 326 (454)
.......... + . ...+...+++++|++..|+...... +.+..++..+.+.+..+++.+|....+.+.+...+ ..+
T Consensus 160 ~v~~~~~~~~-~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~-~~~ 235 (350)
T cd03785 160 PVREEILALD-R-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEE-LGV 235 (350)
T ss_pred CCchHHhhhh-h-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhc-cCC
Confidence 4433211100 0 0 1222222444567666666642211 12223334444344556667666532222222211 136
Q ss_pred CceEeecc-ChHhhhcccCcceEEecCCchhHHHHHHcCCCeecccc----ccchhHHHHHHHHhhceeecCcCCCCCHH
Q 012893 327 YGKVVPWA-PQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPV----FADQALNQRIIETAWGIGVGVXGEKFTKD 401 (454)
Q Consensus 327 nv~v~~~v-p~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~----~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 401 (454)
|+.+.+++ +...++..++ ++|+++|.+|+.||+++|+|+|+.|. ..+|..|+..+.+. |.|..++.++.+.+
T Consensus 236 ~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~~~~~ 312 (350)
T cd03785 236 NYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEELTPE 312 (350)
T ss_pred CeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCCCCHH
Confidence 89999998 4568887777 99999999999999999999999986 36789999999999 99999987666899
Q ss_pred HHHHHHHHHhcCc
Q 012893 402 ETVNALKQVLSSE 414 (454)
Q Consensus 402 ~l~~av~~vl~~~ 414 (454)
++.+++.++++|+
T Consensus 313 ~l~~~i~~ll~~~ 325 (350)
T cd03785 313 RLAAALLELLSDP 325 (350)
T ss_pred HHHHHHHHHhcCH
Confidence 9999999999886
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.80 E-value=5.1e-18 Score=154.68 Aligned_cols=335 Identities=14% Similarity=0.092 Sum_probs=208.1
Q ss_pred CCCCcEEEEEcCC--CccCHHHHHHHHHHHhhhcC--CCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCC--C
Q 012893 7 STQRRHVAVLAFP--FGTHAAPLLDLVRRLSEAAL--EEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLP--E 80 (454)
Q Consensus 7 ~~~~~~il~~~~~--~~GH~~p~l~la~~L~~~~~--G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 80 (454)
..+++||+|-+.- +.||+-+++.+|++| .+. | .+|+++++.....-+.-. .|++|+.+|.... .
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aL--v~d~~~--~~Il~IsG~~~~~~F~~~------~gVd~V~LPsl~k~~~ 75 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHAL--VEDYLG--FDILIISGGPPAGGFPGP------AGVDFVKLPSLIKGDN 75 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHH--hhcccC--ceEEEEeCCCccCCCCCc------ccCceEecCceEecCC
Confidence 3457799999985 899999999999999 555 9 999999997665555442 4999999993332 2
Q ss_pred CCCCCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHH-----HHH--HHcCCCeEEEeCchhhhhh
Q 012893 81 GFRFTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAA-----EMA--EEMRVPWIAYWTAGPRSLL 153 (454)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~-----~~A--~~lgiP~v~~~~~~~~~~~ 153 (454)
+.....+.......+. ..-.+++...++.+ +||++|.|.+-+... .++ +..+-++|..-
T Consensus 76 G~~~~~d~~~~l~e~~----~~Rs~lil~t~~~f--kPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~l-------- 141 (400)
T COG4671 76 GEYGLVDLDGDLEETK----KLRSQLILSTAETF--KPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGL-------- 141 (400)
T ss_pred CceeeeecCCCHHHHH----HHHHHHHHHHHHhc--CCCEEEEeccccchhhhhhHHHHHHhhcCCcceeeh--------
Confidence 2222233333344432 22233444444544 999999995543310 011 00111111100
Q ss_pred hhhchhHHHhhhCCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHH--H
Q 012893 154 AHVDSDIIREIIGVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPI--V 231 (454)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 231 (454)
. .+.-.|+...-.| ......+...++ .|.+.+-+.|.+..+ .
T Consensus 142 --------r-----------~i~D~p~~~~~~w-----------~~~~~~~~I~r~------yD~V~v~GdP~f~d~~~~ 185 (400)
T COG4671 142 --------R-----------SIRDIPQELEADW-----------RRAETVRLINRF------YDLVLVYGDPDFYDPLTE 185 (400)
T ss_pred --------H-----------hhhhchhhhccch-----------hhhHHHHHHHHh------heEEEEecCccccChhhc
Confidence 0 0000221111111 111122333333 455666666666432 1
Q ss_pred HHHHHhccCCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHh-cCCC--EEEEE
Q 012893 232 VETLKSRFRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEA-IGFP--FLWSF 308 (454)
Q Consensus 232 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~-~~~~--~i~~~ 308 (454)
+......-.+++|+|.+ ..+....+.+ |... +.+--|+||-|.... -.+.+...+.+-.. .+.+ .++++
T Consensus 186 ~~~~~~i~~k~~ytG~v-q~~~~~~~~p-----~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivt 257 (400)
T COG4671 186 FPFAPAIRAKMRYTGFV-QRSLPHLPLP-----PHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVT 257 (400)
T ss_pred CCccHhhhhheeEeEEe-eccCcCCCCC-----CcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEe
Confidence 22223333589999999 3322211111 1111 333478888887652 23455555555544 4444 88888
Q ss_pred cCCcccccchhhhhhhC--CCceEeeccCh-HhhhcccCcceEEecCCchhHHHHHHcCCCeeccccc---cchhHHHHH
Q 012893 309 RGNAEEQLPKGFLERTK--SYGKVVPWAPQ-LKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVF---ADQALNQRI 382 (454)
Q Consensus 309 ~~~~~~~l~~~~~~~~~--~nv~v~~~vp~-~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~---~DQ~~nA~~ 382 (454)
|+.-+....+.+....+ +++.|.+|-.+ ..++..++ .+|+-||+||++|-|.+|+|.+++|.. .||-..|.|
T Consensus 258 GP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~R 335 (400)
T COG4671 258 GPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQR 335 (400)
T ss_pred CCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHH
Confidence 98754444444544444 78999999886 46776666 999999999999999999999999984 499999999
Q ss_pred HHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 383 IETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 383 v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
++++ |+.-.+-++++++..++++|...+.
T Consensus 336 l~~L-GL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 336 LEEL-GLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHhc-CcceeeCcccCChHHHHHHHHhccc
Confidence 9999 9999998888999999999999887
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.80 E-value=5.6e-18 Score=166.28 Aligned_cols=348 Identities=13% Similarity=0.039 Sum_probs=195.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCC-CCCCCCCCCCCCCc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVE-SGLPEGFRFTGNPR 89 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~ 89 (454)
+||+++..++.||++|. +|+++| +++| ++|.|++... ..+++.+ .. .++++..++ -++ .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l--~~~~--~~~~~~g~gg--~~m~~~g--~~-~~~~~~~l~v~G~----------~ 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQL--KEHY--PNARFIGVAG--PRMAAEG--CE-VLYSMEELSVMGL----------R 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHH--HhcC--CCcEEEEEcc--HHHHhCc--Cc-cccChHHhhhccH----------H
Confidence 68999999999999999 999999 8899 9999998653 2344441 00 023443332 111 1
Q ss_pred chHHHHHHhchHHHHHHHHHHHHhcCCCccEEEE-cCchhhHHH--HHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhC
Q 012893 90 EPVEHFLKATPGNFVRALEKAVAKTGLEISCLIT-DAFLWFAAE--MAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIG 166 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~-d~~~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (454)
+.+..+.+.. ..+. .+.+++++. +||+||. |..++.... +|+.+|||++.+.+ |-.+
T Consensus 66 ~~l~~~~~~~-~~~~-~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~~w--------------- 125 (385)
T TIGR00215 66 EVLGRLGRLL-KIRK-EVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQVW--------------- 125 (385)
T ss_pred HHHHHHHHHH-HHHH-HHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-CcHh---------------
Confidence 2222221111 2222 334455554 9999875 554434333 88999999997641 1000
Q ss_pred CCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeEEec
Q 012893 167 VNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLNVG 246 (454)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG 246 (454)
.+++. -.+.+.+. ++.+++ +++. +...+ ...--+..+||
T Consensus 126 ----------aw~~~--------------------~~r~l~~~------~d~v~~-~~~~-e~~~~---~~~g~~~~~vG 164 (385)
T TIGR00215 126 ----------AWRKW--------------------RAKKIEKA------TDFLLA-ILPF-EKAFY---QKKNVPCRFVG 164 (385)
T ss_pred ----------hcCcc--------------------hHHHHHHH------HhHhhc-cCCC-cHHHH---HhcCCCEEEEC
Confidence 01100 02333333 222222 2222 22211 22113567899
Q ss_pred -cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHh---c--CCCEEEEEcCCcccccchhh
Q 012893 247 -PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEA---I--GFPFLWSFRGNAEEQLPKGF 320 (454)
Q Consensus 247 -p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~---~--~~~~i~~~~~~~~~~l~~~~ 320 (454)
|+........+...+...-++..+++++|.+..||....-......+++++.. . +.++++..........-+.+
T Consensus 165 nPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~ 244 (385)
T TIGR00215 165 HPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQI 244 (385)
T ss_pred CchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHH
Confidence 55433221101111111222333456788888888864322333444443332 2 34565554432211111112
Q ss_pred hhhh--CCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeecc----cccc---------chhHHHHHHHH
Q 012893 321 LERT--KSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCR----PVFA---------DQALNQRIIET 385 (454)
Q Consensus 321 ~~~~--~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~----P~~~---------DQ~~nA~~v~~ 385 (454)
.+.. ...+.+... +...++..+| ++|+-+|..|+ |++++|+|+|++ |+.. .|..|+..+..
T Consensus 245 ~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~ 320 (385)
T TIGR00215 245 KAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN 320 (385)
T ss_pred HHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC
Confidence 2211 123333322 3346777766 99999999988 999999999999 7642 27789999999
Q ss_pred hhceeecCcCCCCCHHHHHHHHHHHhcCc----hH-HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 012893 386 AWGIGVGVXGEKFTKDETVNALKQVLSSE----EG-KRMRENVGALKKLAFKAVESDGSSTKNFKALV 448 (454)
Q Consensus 386 ~~G~G~~~~~~~~~~~~l~~av~~vl~~~----~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (454)
. ++...+-.++.+++.|.+.+.++++|+ +. +.+++..+++.+.+ +.++.+.+..+.++
T Consensus 321 ~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 321 R-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI----YCNADSERAAQAVL 383 (385)
T ss_pred C-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHh
Confidence 9 999999888899999999999999986 42 45555555555554 33455555444433
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=1.7e-16 Score=154.64 Aligned_cols=308 Identities=17% Similarity=0.149 Sum_probs=174.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc-c-ccccccccCCCCeeEEeCCCCCCCCCCCCCCC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG-S-LFMEKDELRDCKIVPYNVESGLPEGFRFTGNP 88 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (454)
|||+|++.+..||+...+.|+++| .++| |+|++++.+.... . .+.. |+++..++-.-... ...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L--~~~g--~eV~vv~~~~~~~~~~~~~~-------g~~~~~i~~~~~~~----~~~ 65 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEEL--IKRG--VEVLWLGTKRGLEKRLVPKA-------GIEFYFIPVGGLRR----KGS 65 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHH--HhCC--CEEEEEeCCCcchhcccccC-------CCceEEEeccCcCC----CCh
Confidence 489999999999999888999999 9999 9999998744221 1 1222 67776664111000 111
Q ss_pred cchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCc--hhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhC
Q 012893 89 REPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAF--LWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIG 166 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 166 (454)
.+.+...... ...+.. +.++++.. +||+|++... ...+..++..+|+|.+......
T Consensus 66 ~~~l~~~~~~-~~~~~~-l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------ 123 (348)
T TIGR01133 66 FRLIKTPLKL-LKAVFQ-ARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA------------------ 123 (348)
T ss_pred HHHHHHHHHH-HHHHHH-HHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC------------------
Confidence 2222221111 112222 33444543 9999998742 3445567888999997431100
Q ss_pred CCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeEEec
Q 012893 167 VNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLNVG 246 (454)
Q Consensus 167 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG 246 (454)
.+ ....+++.+ .++.+++.+ +.. ++.. ...++|
T Consensus 124 -----------~~--------------------~~~~~~~~~------~~d~ii~~~-~~~--------~~~~-~~~~i~ 156 (348)
T TIGR01133 124 -----------VP--------------------GLTNKLLSR------FAKKVLISF-PGA--------KDHF-EAVLVG 156 (348)
T ss_pred -----------Cc--------------------cHHHHHHHH------HhCeeEECc-hhH--------hhcC-CceEEc
Confidence 00 001122222 244444432 211 1111 224555
Q ss_pred cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHH---HHHHHHHhcCCCEEEEEcCCcccccchhhhhh
Q 012893 247 PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVI---ALAEALEAIGFPFLWSFRGNAEEQLPKGFLER 323 (454)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 323 (454)
.-........+.. ...+...++.++|.+..|+... ..... ..+..+.+.+..+++..|+.... .+.+.
T Consensus 157 n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~~----~l~~~ 227 (348)
T TIGR01133 157 NPVRQEIRSLPVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKNDLE----KVKNV 227 (348)
T ss_pred CCcCHHHhcccch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcchHH----HHHHH
Confidence 3222111100000 1122222344455554455542 22222 22333333455666655554322 22221
Q ss_pred hCC-C-ceEeecc--ChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccc---cchhHHHHHHHHhhceeecCcCC
Q 012893 324 TKS-Y-GKVVPWA--PQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVF---ADQALNQRIIETAWGIGVGVXGE 396 (454)
Q Consensus 324 ~~~-n-v~v~~~v--p~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~---~DQ~~nA~~v~~~~G~G~~~~~~ 396 (454)
..+ + ..++.+. +...+++.++ ++|+++|.+++.||+++|+|+|+.|.. .+|..|+..+++. |.|..++.+
T Consensus 228 ~~~~~l~~~v~~~~~~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~~ 304 (348)
T TIGR01133 228 YQELGIEAIVTFIDENMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQK 304 (348)
T ss_pred HhhCCceEEecCcccCHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEecc
Confidence 111 1 1222333 5678898877 999999988999999999999998863 4788899999999 999998877
Q ss_pred CCCHHHHHHHHHHHhcCc
Q 012893 397 KFTKDETVNALKQVLSSE 414 (454)
Q Consensus 397 ~~~~~~l~~av~~vl~~~ 414 (454)
+.+++.|.+++.++++|+
T Consensus 305 ~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 305 ELLPEKLLEALLKLLLDP 322 (348)
T ss_pred cCCHHHHHHHHHHHHcCH
Confidence 678999999999999986
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.71 E-value=8.2e-16 Score=151.65 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=98.6
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHh-cCCCEEEEEcCCcccccchhhh---hhhCCCceEeeccChH-hhhcccC
Q 012893 270 ENASVIYISFGSMITPPRAEVIALAEALEA-IGFPFLWSFRGNAEEQLPKGFL---ERTKSYGKVVPWAPQL-KILEHSS 344 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~---~~~~~nv~v~~~vp~~-~ll~~~~ 344 (454)
+++++|++..|+.+... .+..+++++.+ .+.++++..|.+.. +.+.+. +..++|+.+.+|+++. .++..++
T Consensus 200 ~~~~~il~~~G~~~~~k--~~~~li~~l~~~~~~~~viv~G~~~~--~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD 275 (380)
T PRK13609 200 PNKKILLIMAGAHGVLG--NVKELCQSLMSVPDLQVVVVCGKNEA--LKQSLEDLQETNPDALKVFGYVENIDELFRVTS 275 (380)
T ss_pred CCCcEEEEEcCCCCCCc--CHHHHHHHHhhCCCcEEEEEeCCCHH--HHHHHHHHHhcCCCcEEEEechhhHHHHHHhcc
Confidence 34567888778775322 34456666654 35677777765421 112221 2223589999999874 7888877
Q ss_pred cceEEecCCchhHHHHHHcCCCeecc-ccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 345 VCVFVTHCGWNSTIEGITGGVPMVCR-PVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~GvP~i~~-P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++|+.+|..|+.||+++|+|+|+. |..++|..|+..+++. |+|+... +.+++.++|.++++|+
T Consensus 276 --~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~----~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 276 --CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR----DDEEVFAKTEALLQDD 339 (380)
T ss_pred --EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC----CHHHHHHHHHHHHCCH
Confidence 999999988999999999999984 6777888999999999 9998643 6799999999999986
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=1.1e-15 Score=143.28 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=78.4
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccChH-hhhcccCcce
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQL-KILEHSSVCV 347 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~~-~ll~~~~~~~ 347 (454)
+.|+|++|+..... ....+++++.. .+.++.+++|+... ..+.+.+. ...|+.+.+++++. .+|..++ +
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~--~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aD--l 244 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP--NLDELKKFAKEYPNIILFIDVENMAELMNEAD--L 244 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc--CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCC--E
Confidence 57999999775432 44566666665 35678888887542 12222221 23689999999975 8888877 9
Q ss_pred EEecCCchhHHHHHHcCCCeeccccccchhHHHHH
Q 012893 348 FVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRI 382 (454)
Q Consensus 348 ~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~ 382 (454)
+||+|| +|++|+++.|+|+|++|...+|..||..
T Consensus 245 ~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 245 AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.70 E-value=3.1e-15 Score=147.63 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=93.5
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHH---h--cCCCEEEEEcCCcccccchhhhhhh----CCCceEeeccChHhhh
Q 012893 270 ENASVIYISFGSMITPPRAEVIALAEALE---A--IGFPFLWSFRGNAEEQLPKGFLERT----KSYGKVVPWAPQLKIL 340 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~---~--~~~~~i~~~~~~~~~~l~~~~~~~~----~~nv~v~~~vp~~~ll 340 (454)
+++++|++..||...........++++++ + .+.+++++.+.... .+.+.+.. .-++.+.+ -.-..++
T Consensus 184 ~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~---~~~~~~~~~~~~~~~v~~~~-~~~~~~~ 259 (380)
T PRK00025 184 PDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR---REQIEEALAEYAGLEVTLLD-GQKREAM 259 (380)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh---HHHHHHHHhhcCCCCeEEEc-ccHHHHH
Confidence 34567777777654322222344444433 2 24567776552221 12222211 12333332 1235677
Q ss_pred cccCcceEEecCCchhHHHHHHcCCCeecccccc--------chhHH-----HHHHHHhhceeecCcCCCCCHHHHHHHH
Q 012893 341 EHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFA--------DQALN-----QRIIETAWGIGVGVXGEKFTKDETVNAL 407 (454)
Q Consensus 341 ~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~--------DQ~~n-----A~~v~~~~G~G~~~~~~~~~~~~l~~av 407 (454)
..++ ++|+.+|.+++ ||+++|+|+|++|... +|..| +..+++. +++..+.....+++.|.+.+
T Consensus 260 ~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~i 335 (380)
T PRK00025 260 AAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEKLARAL 335 (380)
T ss_pred HhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHHHHHHH
Confidence 7776 99999998887 9999999999885321 22222 2334444 44444555567899999999
Q ss_pred HHHhcCchH-HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 012893 408 KQVLSSEEG-KRMRENVGALKKLAFKAVESDGSSTKNFKALVEV 450 (454)
Q Consensus 408 ~~vl~~~~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 450 (454)
.++++|++. ++++++++++.+.+ ..+++.+.++.+.+.
T Consensus 336 ~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~ 374 (380)
T PRK00025 336 LPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLEL 374 (380)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 999999732 34555554444443 234444444444443
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.64 E-value=2.5e-17 Score=142.77 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=101.3
Q ss_pred EEEEeeCCCCCCCH-HHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhhhhCCCceEeeccC-hHhhhcccCcceEE
Q 012893 274 VIYISFGSMITPPR-AEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP-QLKILEHSSVCVFV 349 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~-~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp-~~~ll~~~~~~~~I 349 (454)
+|+|+.||.+...- ..+..+...+.. ...++++.+|..........+ +....|+.+.+|++ ...++..++ ++|
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~aD--lvI 77 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKV-ENFNPNVKVFGFVDNMAELMAAAD--LVI 77 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCH-CCTTCCCEEECSSSSHHHHHHHHS--EEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHH-hccCCcEEEEechhhHHHHHHHcC--EEE
Confidence 48999998863211 111223333333 358999999987543322221 11226899999999 789998888 999
Q ss_pred ecCCchhHHHHHHcCCCeecccccc----chhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 350 THCGWNSTIEGITGGVPMVCRPVFA----DQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 350 ~HgG~gsv~eal~~GvP~i~~P~~~----DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
||||.||++|++++|+|+|++|... ||..||..+++. |+|..+.....+.+.|.++|.++++++
T Consensus 78 s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 78 SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCCH
T ss_pred eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcCc
Confidence 9999999999999999999999988 999999999999 999999888888999999999999886
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.61 E-value=2.6e-14 Score=141.09 Aligned_cols=163 Identities=14% Similarity=0.227 Sum_probs=110.4
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHH-Hh-cCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccChH-hhhcccC
Q 012893 270 ENASVIYISFGSMITPPRAEVIALAEAL-EA-IGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQL-KILEHSS 344 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~~-~ll~~~~ 344 (454)
+++++|+++.|+.+.. ..+..+++++ +. .+.++++++|.+.. +-+.+.+. ..+++.+.+|+++. .++..+|
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~~~--l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aD 275 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKSKE--LKRSLTAKFKSNENVLILGYTKHMNEWMASSQ 275 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCCHH--HHHHHHHHhccCCCeEEEeccchHHHHHHhhh
Confidence 4567888888988632 2344444443 22 35677777775421 11222221 23578888999764 7787777
Q ss_pred cceEEecCCchhHHHHHHcCCCeecc-ccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchH-HHHHHH
Q 012893 345 VCVFVTHCGWNSTIEGITGGVPMVCR-PVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEG-KRMREN 422 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~GvP~i~~-P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~-~~~~~~ 422 (454)
++|+.+|..|+.||+++|+|+|+. |..++|..|+..+++. |+|+... +.+++.++|.++++|++. +.|+++
T Consensus 276 --l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~ 348 (391)
T PRK13608 276 --LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD----TPEEAIKIVASLTNGNEQLTNMIST 348 (391)
T ss_pred --EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999998888999999999999987 7777788999999999 9998754 788999999999988622 334444
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 423 VGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 423 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+++++ ...+....++.+++.+
T Consensus 349 ~~~~~--------~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 349 MEQDK--------IKYATQTICRDLLDLI 369 (391)
T ss_pred HHHhc--------CCCCHHHHHHHHHHHh
Confidence 43332 2344444455554443
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.61 E-value=1.9e-13 Score=134.66 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=106.8
Q ss_pred CCCCcEEEEeeCCCCCCCHHHH-HHHHHHHH-----hcCCCEEEEEcCCcccccchhhhhh-hCCCceEeeccCh-Hhhh
Q 012893 269 HENASVIYISFGSMITPPRAEV-IALAEALE-----AIGFPFLWSFRGNAEEQLPKGFLER-TKSYGKVVPWAPQ-LKIL 340 (454)
Q Consensus 269 ~~~~~~v~vs~Gs~~~~~~~~~-~~~~~~~~-----~~~~~~i~~~~~~~~~~l~~~~~~~-~~~nv~v~~~vp~-~~ll 340 (454)
.+++++|++..|+.+......+ ..+...+. ..+.++++.+|.+.. +-+.+.+. ...++.+.+|+++ ..++
T Consensus 203 ~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--~~~~L~~~~~~~~v~~~G~~~~~~~l~ 280 (382)
T PLN02605 203 DEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK--LQSKLESRDWKIPVKVRGFVTNMEEWM 280 (382)
T ss_pred CCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH--HHHHHHhhcccCCeEEEeccccHHHHH
Confidence 3456778777777654332222 22322221 234566777776521 11222221 1246888899986 4777
Q ss_pred cccCcceEEecCCchhHHHHHHcCCCeeccccccchh-HHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC-chHHH
Q 012893 341 EHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQA-LNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS-EEGKR 418 (454)
Q Consensus 341 ~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~-~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~-~~~~~ 418 (454)
..+| ++|+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -+++.|.++|.++++| + +
T Consensus 281 ~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~----~~~~~la~~i~~ll~~~~---~ 350 (382)
T PLN02605 281 GACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS----ESPKEIARIVAEWFGDKS---D 350 (382)
T ss_pred HhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec----CCHHHHHHHHHHHHcCCH---H
Confidence 6666 9999999999999999999999987655554 799999999 999865 3789999999999987 4 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 419 MRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 419 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
. .+++++..++.. ..+++.+.++.+.+.+
T Consensus 351 ~---~~~m~~~~~~~~-~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 351 E---LEAMSENALKLA-RPEAVFDIVHDLHELV 379 (382)
T ss_pred H---HHHHHHHHHHhc-CCchHHHHHHHHHHHh
Confidence 2 233333333321 2355555555555544
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.58 E-value=8.5e-13 Score=129.84 Aligned_cols=328 Identities=14% Similarity=0.058 Sum_probs=175.1
Q ss_pred CCCccCHHHHHHHHHHHhhhc--CCCcEEEE---EEeCCCcCc-c-ccccccccCCCCeeEEeCC-CCCCCCCCCCCCCc
Q 012893 18 FPFGTHAAPLLDLVRRLSEAA--LEEEVTFS---FFSTAQSNG-S-LFMEKDELRDCKIVPYNVE-SGLPEGFRFTGNPR 89 (454)
Q Consensus 18 ~~~~GH~~p~l~la~~L~~~~--~G~~h~V~---~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~ 89 (454)
+.++|-=.-.++||++| ++ .| ++|. |++.....+ . +... | .+..+| .++... ...
T Consensus 4 snghged~~a~ai~~~l--~~~~~~--~~v~~~p~vG~~~~~e~~~ip~~-------g-~~~~~~sgg~~~~-----~~~ 66 (396)
T TIGR03492 4 SNGHGEDLIAARIAKAL--LQLSPD--LNLEALPLVGEGRAYQNLGIPII-------G-PTKELPSGGFSYQ-----SLR 66 (396)
T ss_pred CCCchHHHHHHHHHHHH--HhhCCC--CCeEEeCcccCCHHHhhCCCcee-------C-CCCCCCCCCccCC-----CHH
Confidence 34555566778999999 66 79 9999 999864433 2 2222 4 555555 333221 112
Q ss_pred chHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCch-hhhhhhhhchhHHHhhhCCC
Q 012893 90 EPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAG-PRSLLAHVDSDIIREIIGVN 168 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (454)
..+....+.....+.+... +++....+||+||+-.=.. ...+|...|+|++.+.+.= .+...+.. +.
T Consensus 67 ~~~~~~~~gl~~~~~~~~~-~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~~~~---------~~- 134 (396)
T TIGR03492 67 GLLRDLRAGLVGLTLGQWR-ALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWESGP---------RR- 134 (396)
T ss_pred HHHHHHHhhHHHHHHHHHH-HHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeecCCC---------CC-
Confidence 2222222211122222222 2233234889887653222 7789999999999965421 11100000 00
Q ss_pred CCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhccCCeEEec-c
Q 012893 169 GPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRFRKFLNVG-P 247 (454)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG-p 247 (454)
+.......+||.....| . ..++..++ ++.+.+.+ +.... .++..--++.+|| |
T Consensus 135 -~~~~~~~~~~G~~~~p~-e-------------~n~l~~~~------a~~v~~~~--~~t~~---~l~~~g~k~~~vGnP 188 (396)
T TIGR03492 135 -SPSDEYHRLEGSLYLPW-E-------------RWLMRSRR------CLAVFVRD--RLTAR---DLRRQGVRASYLGNP 188 (396)
T ss_pred -ccchhhhccCCCccCHH-H-------------HHHhhchh------hCEEeCCC--HHHHH---HHHHCCCeEEEeCcC
Confidence 00000111233321111 0 02222222 44444322 11222 1222223799999 6
Q ss_pred CCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHh----cCCCEEEEEcCCc-ccccchhhhh
Q 012893 248 STLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEA----IGFPFLWSFRGNA-EEQLPKGFLE 322 (454)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~l~~~~~~ 322 (454)
+...-..... . +..+++++|.+--||-...-...+..+++++.. .+..+++.+.+.. ...+.....+
T Consensus 189 v~d~l~~~~~--~------~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~ 260 (396)
T TIGR03492 189 MMDGLEPPER--K------PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILED 260 (396)
T ss_pred HHhcCccccc--c------ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHh
Confidence 6655332111 0 112345688888888864322333344444443 3678888884332 2111111111
Q ss_pred -hh--------------CCCceEeeccC-hHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHh
Q 012893 323 -RT--------------KSYGKVVPWAP-QLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETA 386 (454)
Q Consensus 323 -~~--------------~~nv~v~~~vp-~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~ 386 (454)
.. ..++.+..+.. ...++..++ ++|+-+|..| .|++..|+|+|++|....|. |+...++.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~ 336 (396)
T TIGR03492 261 LGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQ 336 (396)
T ss_pred cCceecCCccccchhhccCceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhh
Confidence 00 01355555544 457887777 9999999766 99999999999999877776 98877762
Q ss_pred ---hceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 387 ---WGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 387 ---~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
.|.++.+.. .+.+.|.+++.++++|+
T Consensus 337 ~~l~g~~~~l~~--~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 337 SRLLGGSVFLAS--KNPEQAAQVVRQLLADP 365 (396)
T ss_pred HhhcCCEEecCC--CCHHHHHHHHHHHHcCH
Confidence 156666654 35699999999999986
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.38 E-value=4.2e-14 Score=118.64 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=82.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCC--CCCCCCCCCCCcc
Q 012893 13 VAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESG--LPEGFRFTGNPRE 90 (454)
Q Consensus 13 il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~ 90 (454)
|+|++.|+.||++|+++||++| +++| |+|++++++.+.+.+++. |++|.+++.. ++... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L--~~rG--h~V~~~~~~~~~~~v~~~-------Gl~~~~~~~~~~~~~~~----~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARAL--RRRG--HEVRLATPPDFRERVEAA-------GLEFVPIPGDSRLPRSL----EPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH--HHTT---EEEEEETGGGHHHHHHT-------T-EEEESSSCGGGGHHH----HHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHH--hccC--CeEEEeecccceeccccc-------CceEEEecCCcCcCccc----chhh
Confidence 7899999999999999999999 9999 999999999999999777 9999999744 10000 0000
Q ss_pred hHHHHHHh--chHHHHHHHHHHHHhc------CCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhh
Q 012893 91 PVEHFLKA--TPGNFVRALEKAVAKT------GLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRS 151 (454)
Q Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~~~~------~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~ 151 (454)
.+...... ......+.+....... ...+|+++.+.....+..+|+++|||++.....+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 11111111 0111222222222111 1257888888888889999999999999998766554
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=5.4e-09 Score=101.74 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=87.2
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh-cCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChH---hhhcccCcce
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA-IGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQL---KILEHSSVCV 347 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~---~ll~~~~~~~ 347 (454)
+.+++..|+.... ..+.+..++..+.. .+..+++...+... +.+. ...+|+.+.+++++. .++..++ +
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~----~~~~-~~~~~v~~~g~~~~~~~~~~~~~~d--~ 269 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPAR----ARLE-ARYPNVHFLGFLDGEELAAAYASAD--V 269 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchH----HHHh-ccCCcEEEEeccCHHHHHHHHHhCC--E
Confidence 4566777876532 23444444444443 24566655543321 1111 234789999999865 5787777 8
Q ss_pred EEecCCc----hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 348 FVTHCGW----NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 348 ~I~HgG~----gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+|+.+.. +++.||+++|+|+|+.+..+ +...++.. +.|..++.. +.+++.+++.++++|+
T Consensus 270 ~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~~--~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 270 FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEPG--DAEAFAAALAALLADP 333 (364)
T ss_pred EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCCC--CHHHHHHHHHHHHcCH
Confidence 8877653 68999999999999887554 55667777 889888764 7788999999999987
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.32 E-value=2e-09 Score=109.09 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=90.3
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhc-CCCEEEEEcCCcccccchhhhhhh-CCCceEeeccChH---hhhcccCcceE
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAI-GFPFLWSFRGNAEEQLPKGFLERT-KSYGKVVPWAPQL---KILEHSSVCVF 348 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~~~~-~~nv~v~~~vp~~---~ll~~~~~~~~ 348 (454)
.+++..|+... ......++++++.. +.+++++..+... +.+.+.. ..||.+.+++++. .++..++ ++
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~~~----~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD--v~ 335 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGPYR----EELEKMFAGTPTVFTGMLQGDELSQAYASGD--VF 335 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCChHH----HHHHHHhccCCeEEeccCCHHHHHHHHHHCC--EE
Confidence 45566687753 33455666777664 5666655443321 2222222 2578888999853 5777777 78
Q ss_pred EecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHH---hhceeecCcCCCCCHHHHHHHHHHHhcCchH-HHHH
Q 012893 349 VTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIET---AWGIGVGVXGEKFTKDETVNALKQVLSSEEG-KRMR 420 (454)
Q Consensus 349 I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~---~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~-~~~~ 420 (454)
|.-.. -.++.||+++|+|+|+.... .....++. - +.|..++.+ +.++++++|.++++|++. +.+.
T Consensus 336 V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~ 408 (465)
T PLN02871 336 VMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG--DVDDCVEKLETLLADPELRERMG 408 (465)
T ss_pred EECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC--CHHHHHHHHHHHHhCHHHHHHHH
Confidence 86543 33688999999999976543 23445555 6 788888764 789999999999998732 4566
Q ss_pred HHHHHHH
Q 012893 421 ENVGALK 427 (454)
Q Consensus 421 ~~a~~l~ 427 (454)
+++++..
T Consensus 409 ~~a~~~~ 415 (465)
T PLN02871 409 AAAREEV 415 (465)
T ss_pred HHHHHHH
Confidence 6665543
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.27 E-value=1.6e-08 Score=98.16 Aligned_cols=132 Identities=11% Similarity=0.108 Sum_probs=83.9
Q ss_pred CcEEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChH---hhhcccCcce
Q 012893 272 ASVIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQL---KILEHSSVCV 347 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~---~ll~~~~~~~ 347 (454)
.+.+++..|+.... ..+.+...+..+...+.++++...+...... ........++.+.+++++. .++..++ +
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~--~~~~~~~~~v~~~g~~~~~~~~~~~~~ad--~ 265 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEE--SYELEGDPRVEFLGAYPQEEIDDFYAEID--V 265 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHH--HHhhcCCCeEEEeCCCCHHHHHHHHHhCC--E
Confidence 34667778877543 2333333333333335666655443321111 1101134788899999754 5687777 7
Q ss_pred EEec----CCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 348 FVTH----CGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 348 ~I~H----gG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+|+. .|. .++.||+++|+|+|+.+.. .+...++.. +.|..++.. +.+++.+++.++++|+
T Consensus 266 ~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~--d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 266 LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPPG--DAEDLAAALERLIDDP 330 (359)
T ss_pred EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECCC--CHHHHHHHHHHHHhCh
Confidence 7742 334 3799999999999986543 456666666 688888765 6899999999999986
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.23 E-value=2e-08 Score=98.48 Aligned_cols=144 Identities=11% Similarity=0.111 Sum_probs=87.4
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh-cCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccCh-HhhhcccCcce
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA-IGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQ-LKILEHSSVCV 347 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~-~~ll~~~~~~~ 347 (454)
..+++..|..... ..+.+...+..+.+ .+.++++...+.....+.+ ..+. ..+++.+.++.+. ..++..++ +
T Consensus 197 ~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~ 273 (371)
T cd04962 197 EKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAER-LARELGLQDDVLFLGKQDHVEELLSIAD--L 273 (371)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHH-HHHHcCCCceEEEecCcccHHHHHHhcC--E
Confidence 3566677777532 22222222333332 3566666644432211211 1111 2357888888775 57787776 7
Q ss_pred EEec----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchH-HHHHHH
Q 012893 348 FVTH----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEG-KRMREN 422 (454)
Q Consensus 348 ~I~H----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~-~~~~~~ 422 (454)
+|.- |.-.++.||+++|+|+|+... ...+..+++- ..|..++.+ +.+++.+++.++++|++. .+++++
T Consensus 274 ~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~ 346 (371)
T cd04962 274 FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDVG--DVEAMAEYALSLLEDDELWQEFSRA 346 (371)
T ss_pred EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCCC--CHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 7743 234599999999999998543 3456667666 678777654 789999999999988632 445555
Q ss_pred HHHH
Q 012893 423 VGAL 426 (454)
Q Consensus 423 a~~l 426 (454)
+++.
T Consensus 347 ~~~~ 350 (371)
T cd04962 347 ARNR 350 (371)
T ss_pred HHHH
Confidence 5554
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=2e-09 Score=96.07 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=106.7
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhh--CCCceEeeccC-hHhhhcccCcceEEe
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERT--KSYGKVVPWAP-QLKILEHSSVCVFVT 350 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~--~~nv~v~~~vp-~~~ll~~~~~~~~I~ 350 (454)
-|+|++|.+- +......++..+.+.++.+-+++|...+ ......++. ..|+.+..... ...+++.|+ +.|+
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p--~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d--~aI~ 233 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNP--TLKNLRKRAEKYPNINLYIDTNDMAELMKEAD--LAIS 233 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCc--chhHHHHHHhhCCCeeeEecchhHHHHHHhcc--hhee
Confidence 5999999773 4456778888888888777778774332 112222221 25777666555 457888877 9999
Q ss_pred cCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 012893 351 HCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALK 427 (454)
Q Consensus 351 HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~ 427 (454)
-|| .|++|++.-|+|.+++|....|--.|...+.+ |+-..+... ++......-+.++..|+ ..|++...-.
T Consensus 234 AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~~-l~~~~~~~~~~~i~~d~---~~rk~l~~~~ 304 (318)
T COG3980 234 AAG-STLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGYH-LKDLAKDYEILQIQKDY---ARRKNLSFGS 304 (318)
T ss_pred ccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccCC-CchHHHHHHHHHhhhCH---HHhhhhhhcc
Confidence 988 58999999999999999999999999999999 998888765 67777888888888886 5555544433
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.20 E-value=3.6e-08 Score=96.04 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=90.8
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhh-hhhCCCceEeeccChH---hhhcccCc
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFL-ERTKSYGKVVPWAPQL---KILEHSSV 345 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~-~~~~~nv~v~~~vp~~---~ll~~~~~ 345 (454)
+.+++..|+.... ..+.+..++..+.+ .+.++++..++.....+.+... ....+|+.+.+++|+. .++..++
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad- 280 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAAD- 280 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcC-
Confidence 4566677876543 23444444444443 3456666554432211111110 0134688899999865 5677777
Q ss_pred ceEEecC----CchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchH-HHHH
Q 012893 346 CVFVTHC----GWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEG-KRMR 420 (454)
Q Consensus 346 ~~~I~Hg----G~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~-~~~~ 420 (454)
++|..+ ...++.||+++|+|+|+... ...+..++.. +.|..++..+ . ++.+++.++++|++. +.+.
T Consensus 281 -~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~ 351 (374)
T cd03817 281 -LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPPGD--E-ALAEALLRLLQDPELRRRLS 351 (374)
T ss_pred -EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHH
Confidence 777543 34689999999999998653 3456677777 7888887542 2 899999999998732 3455
Q ss_pred HHHHHHHHH
Q 012893 421 ENVGALKKL 429 (454)
Q Consensus 421 ~~a~~l~~~ 429 (454)
+++++..+.
T Consensus 352 ~~~~~~~~~ 360 (374)
T cd03817 352 KNAEESAEK 360 (374)
T ss_pred HHHHHHHHH
Confidence 555555444
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.18 E-value=2.7e-08 Score=97.44 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=87.7
Q ss_pred CcEEEEeeCCCCCC-CHHHHHHHHHHHHhc-CCCEEEEEcCCcccccchhhhhhhCCCceEeeccChH---hhhcccCcc
Q 012893 272 ASVIYISFGSMITP-PRAEVIALAEALEAI-GFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQL---KILEHSSVC 346 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~---~ll~~~~~~ 346 (454)
.+.+++..|+.... ..+.+...+..+... +.++++...+.....+.+.......+|+.+.+++++. .++..++
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d-- 296 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAAD-- 296 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhC--
Confidence 35677778877543 234444444444433 5566555433222111111111234789999999854 5677777
Q ss_pred eEEecCCc---------hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCch-H
Q 012893 347 VFVTHCGW---------NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEE-G 416 (454)
Q Consensus 347 ~~I~HgG~---------gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~-~ 416 (454)
++|..... +++.||+++|+|+|+.+..+.+. .+... +.|..++.. +.+++.+++.++++|++ .
T Consensus 297 i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~~~--~~~~l~~~i~~~~~~~~~~ 369 (394)
T cd03794 297 VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEA-GAGLVVPPG--DPEALAAAILELLDDPEER 369 (394)
T ss_pred eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccC-CcceEeCCC--CHHHHHHHHHHHHhChHHH
Confidence 66654332 34799999999999988765443 33444 567766654 78999999999998862 2
Q ss_pred HHHHHHHHHH
Q 012893 417 KRMRENVGAL 426 (454)
Q Consensus 417 ~~~~~~a~~l 426 (454)
+.+++++++.
T Consensus 370 ~~~~~~~~~~ 379 (394)
T cd03794 370 AEMGENGRRY 379 (394)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.18 E-value=3.1e-08 Score=98.79 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=85.4
Q ss_pred CCcEEEEeeCCCCCC-CHHHHHHHHHHHHh--------cCCCEEEEEcCCcccccchhhhhhhCCCceEe-eccChH---
Q 012893 271 NASVIYISFGSMITP-PRAEVIALAEALEA--------IGFPFLWSFRGNAEEQLPKGFLERTKSYGKVV-PWAPQL--- 337 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~-~~vp~~--- 337 (454)
++..++++.|..... ..+.+...+..+.+ .+..++++-.+.....+.+...+.--+|+.+. +|+|..
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~ 309 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYP 309 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHH
Confidence 344566667776532 22333333333332 13455444433322222211111111466655 688854
Q ss_pred hhhcccCcceEEe-c-C--C---chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHH
Q 012893 338 KILEHSSVCVFVT-H-C--G---WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQV 410 (454)
Q Consensus 338 ~ll~~~~~~~~I~-H-g--G---~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~v 410 (454)
.++..++ +++. + . | -.++.||+++|+|+|+... ......+++- +.|..++ +.++++++|.++
T Consensus 310 ~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~----d~~~la~~i~~l 378 (415)
T cd03816 310 KLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG----DSEELAEQLIDL 378 (415)
T ss_pred HHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC----CHHHHHHHHHHH
Confidence 5577777 6653 1 1 2 3379999999999998543 3566777777 8898873 789999999999
Q ss_pred hcC---ch-HHHHHHHHHHHH
Q 012893 411 LSS---EE-GKRMRENVGALK 427 (454)
Q Consensus 411 l~~---~~-~~~~~~~a~~l~ 427 (454)
++| ++ .+.+++++++..
T Consensus 379 l~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 379 LSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HhcCCCHHHHHHHHHHHHHhh
Confidence 998 53 355666666554
No 53
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.17 E-value=2.3e-08 Score=99.00 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=88.7
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccch------hhhhh--hCCCceEeeccChHh---
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPK------GFLER--TKSYGKVVPWAPQLK--- 338 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~------~~~~~--~~~nv~v~~~vp~~~--- 338 (454)
..+++..|+.... ..+.+...+..+.+ .+..++++.++... .... .+.+. ...|+.+.+++|+..
T Consensus 220 ~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 298 (398)
T cd03800 220 KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDD-ILAMDEEELRELARELGVIDRVDFPGRVSREDLPA 298 (398)
T ss_pred CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCc-chhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHH
Confidence 3566778887532 22333333333332 24566666554321 1111 01111 236888899999754
Q ss_pred hhcccCcceEEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 339 ILEHSSVCVFVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 339 ll~~~~~~~~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++..++ ++++.+- -.++.||+++|+|+|+.... .....+++. +.|..++.. +.+++.++|.++++|+
T Consensus 299 ~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~~--~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 299 LYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDPR--DPEALAAALRRLLTDP 369 (398)
T ss_pred HHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCCC--CHHHHHHHHHHHHhCH
Confidence 577777 7775432 35899999999999987643 355667777 889888764 7999999999999886
Q ss_pred hH-HHHHHHHHH
Q 012893 415 EG-KRMRENVGA 425 (454)
Q Consensus 415 ~~-~~~~~~a~~ 425 (454)
+. ..+.+++++
T Consensus 370 ~~~~~~~~~a~~ 381 (398)
T cd03800 370 ALRRRLSRAGLR 381 (398)
T ss_pred HHHHHHHHHHHH
Confidence 21 334444433
No 54
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.11 E-value=6.4e-08 Score=92.03 Aligned_cols=299 Identities=15% Similarity=0.098 Sum_probs=157.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC--ccccccccccCCCCeeEEeCCCCCCCCCCCCCCC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN--GSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNP 88 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (454)
|||.+--... -|+.-+-.+.++| .++| |+|.+.+-.... +.++.. |+++..+...-
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL--~~~G--heV~it~R~~~~~~~LL~~y-------g~~y~~iG~~g---------- 58 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIREL--EKRG--HEVLITARDKDETEELLDLY-------GIDYIVIGKHG---------- 58 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHH--HhCC--CEEEEEEeccchHHHHHHHc-------CCCeEEEcCCC----------
Confidence 4665544332 3999999999999 9999 999998875432 123333 78888874111
Q ss_pred cchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhCCC
Q 012893 89 REPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIGVN 168 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (454)
......+.... ....+. ..++... +||++|+- .+..+..+|..+|+|+|.+.-....... ..+.
T Consensus 59 ~~~~~Kl~~~~-~R~~~l-~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~---------~~Lt-- 122 (335)
T PF04007_consen 59 DSLYGKLLESI-ERQYKL-LKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ---------NRLT-- 122 (335)
T ss_pred CCHHHHHHHHH-HHHHHH-HHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc---------ceee--
Confidence 11122221111 222222 2233333 99999976 5667778999999999998642211100 0000
Q ss_pred CCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEE-ecCcccCCHHHHHHHHhccCCeEEecc
Q 012893 169 GPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVA-INSYEELDPIVVETLKSRFRKFLNVGP 247 (454)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~vGp 247 (454)
+|-... --.|..+ . ..++.+++.. +.+. .+++.++ .++=|
T Consensus 123 ---------~Pla~~---i~~P~~~-----~---~~~~~~~G~~----~~i~~y~G~~E~---------------ayl~~ 163 (335)
T PF04007_consen 123 ---------LPLADV---IITPEAI-----P---KEFLKRFGAK----NQIRTYNGYKEL---------------AYLHP 163 (335)
T ss_pred ---------hhcCCe---eECCccc-----C---HHHHHhcCCc----CCEEEECCeeeE---------------EeecC
Confidence 110000 0000000 0 0111111100 0111 2222211 11111
Q ss_pred CCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCC----CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhh
Q 012893 248 STLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITP----PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLER 323 (454)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 323 (454)
...++++..-++. .+.+.|++-+.+..+. ....+..+++.+++.+..+|+..+......+-+.
T Consensus 164 --------F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~---- 230 (335)
T PF04007_consen 164 --------FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEK---- 230 (335)
T ss_pred --------CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhc----
Confidence 1112233333442 2446777777765432 3455678899999888775555444332212111
Q ss_pred hCCCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeec-cccccchhHHHHHHHHhhceeecCcCCCCCHH
Q 012893 324 TKSYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVC-RPVFADQALNQRIIETAWGIGVGVXGEKFTKD 401 (454)
Q Consensus 324 ~~~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~-~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 401 (454)
-++.+. ..++...+|.+++ ++|+-|| +...||+..|+|.|. .| ++-...-+++.+. |+-... .+.+
T Consensus 231 --~~~~i~~~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~~~--g~~~~vd~~L~~~-Gll~~~----~~~~ 298 (335)
T PF04007_consen 231 --YGVIIPPEPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISCFP--GKLLAVDKYLIEK-GLLYHS----TDPD 298 (335)
T ss_pred --cCccccCCCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEecC--CcchhHHHHHHHC-CCeEec----CCHH
Confidence 124443 5566678999998 9999888 899999999999995 44 3322334556666 763222 2667
Q ss_pred HHHHHHHHHh
Q 012893 402 ETVNALKQVL 411 (454)
Q Consensus 402 ~l~~av~~vl 411 (454)
++.+.+.+.+
T Consensus 299 ei~~~v~~~~ 308 (335)
T PF04007_consen 299 EIVEYVRKNL 308 (335)
T ss_pred HHHHHHHHhh
Confidence 7776555544
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.11 E-value=2.6e-07 Score=92.26 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=85.5
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHh----cCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChH---hhhcccCc
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEA----IGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQL---KILEHSSV 345 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~---~ll~~~~~ 345 (454)
+.+++..|+.... ..+..++++++. .+.+++++..+.....+-+...+...+||.+.+++|+. .++..+++
T Consensus 229 ~~~i~~~G~l~~~--kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi 306 (412)
T PRK10307 229 KKIVLYSGNIGEK--QGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADC 306 (412)
T ss_pred CEEEEEcCccccc--cCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCE
Confidence 4566667887532 233444444443 23455544322211111111111112588888999864 57888886
Q ss_pred ceEEecCCc------hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCch-HHH
Q 012893 346 CVFVTHCGW------NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEE-GKR 418 (454)
Q Consensus 346 ~~~I~HgG~------gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~-~~~ 418 (454)
.++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|..++.+ +.++++++|.++++|++ .+.
T Consensus 307 ~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~--d~~~la~~i~~l~~~~~~~~~ 379 (412)
T PRK10307 307 HLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPE--SVEALVAAIAALARQALLRPK 379 (412)
T ss_pred eEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCC--CHHHHHHHHHHHHhCHHHHHH
Confidence 555555432 2368999999999987654311 112232 567777654 78999999999998863 356
Q ss_pred HHHHHHHHHH
Q 012893 419 MRENVGALKK 428 (454)
Q Consensus 419 ~~~~a~~l~~ 428 (454)
+++++++..+
T Consensus 380 ~~~~a~~~~~ 389 (412)
T PRK10307 380 LGTVAREYAE 389 (412)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.10 E-value=1.7e-07 Score=90.51 Aligned_cols=313 Identities=14% Similarity=0.118 Sum_probs=164.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc-ccccccccCCCCeeEEeCCCCCCCCCCCCCCCcc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS-LFMEKDELRDCKIVPYNVESGLPEGFRFTGNPRE 90 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (454)
||++++....|+......++++| .+.| |+|++++....... .... ++++..++.... . ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L--~~~g--~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~-------~~ 61 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKAL--RAAG--YEVHVVAPPGDELEELEAL-------GVKVIPIPLDRR-G-------IN 61 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHH--HhcC--CeeEEEecCCCcccccccC-------CceEEecccccc-c-------cC
Confidence 57788777889999999999999 8899 99999998655442 2223 677776652210 0 00
Q ss_pred hHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCch--hhHHHHHHHcCCCeEEEeCchhhhhhhhhchhHHHhhhCCC
Q 012893 91 PVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFL--WFAAEMAEEMRVPWIAYWTAGPRSLLAHVDSDIIREIIGVN 168 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (454)
.+..+ ..... +..+++.. +||+|++.... ..+..++...+.|.+.+..........
T Consensus 62 ~~~~~-----~~~~~-~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------- 119 (359)
T cd03808 62 PFKDL-----KALLR-LYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFT-------------- 119 (359)
T ss_pred hHhHH-----HHHHH-HHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhc--------------
Confidence 11111 01111 22333333 89999887432 234445554666665543211100000
Q ss_pred CCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhcc----CCeEE
Q 012893 169 GPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSRF----RKFLN 244 (454)
Q Consensus 169 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~ 244 (454)
.. .........+.+. ....++.++..+....+ ...... .....
T Consensus 120 ---------~~-----------------~~~~~~~~~~~~~--~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~ 166 (359)
T cd03808 120 ---------SG-----------------GLKRRLYLLLERL--ALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVL 166 (359)
T ss_pred ---------cc-----------------hhHHHHHHHHHHH--HHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEE
Confidence 00 0000001111111 12335666665532211 112211 12233
Q ss_pred eccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchh-h
Q 012893 245 VGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKG-F 320 (454)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~-~ 320 (454)
+.|...+.......... ...++.+++..|+.... ..+.+...+..+.+ .+.++++..++......... .
T Consensus 167 ~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~ 239 (359)
T cd03808 167 IPGSGVDLDRFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEI 239 (359)
T ss_pred ecCCCCChhhcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHH
Confidence 32222221111000000 12335677788877543 23444444444443 34566655554332111110 1
Q ss_pred hh-hhCCCceEeeccC-hHhhhcccCcceEEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCc
Q 012893 321 LE-RTKSYGKVVPWAP-QLKILEHSSVCVFVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVX 394 (454)
Q Consensus 321 ~~-~~~~nv~v~~~vp-~~~ll~~~~~~~~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~ 394 (454)
.+ ....++.+.++.. ...++..++ ++|+.+. -+++.||+++|+|+|+-+.. .+...+++. +.|..++
T Consensus 240 ~~~~~~~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~ 312 (359)
T cd03808 240 EKLGLEGRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVP 312 (359)
T ss_pred HhcCCcceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEEC
Confidence 11 1235777777654 357887777 7776543 56899999999999986543 345566666 7888777
Q ss_pred CCCCCHHHHHHHHHHHhcCc
Q 012893 395 GEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 395 ~~~~~~~~l~~av~~vl~~~ 414 (454)
.+ +.+++.+++.+++.|+
T Consensus 313 ~~--~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 313 PG--DAEALADAIERLIEDP 330 (359)
T ss_pred CC--CHHHHHHHHHHHHhCH
Confidence 54 7899999999999886
No 57
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.10 E-value=1.2e-07 Score=94.07 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=65.7
Q ss_pred CCceEeeccChH---hhhcccCcceEEe--c-CCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCC
Q 012893 326 SYGKVVPWAPQL---KILEHSSVCVFVT--H-CGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKF 398 (454)
Q Consensus 326 ~nv~v~~~vp~~---~ll~~~~~~~~I~--H-gG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 398 (454)
++|.+.+++|+. .++..++ ++|. . .|. .++.||+++|+|+|+... ......+..- ..|..++..
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~ad--v~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~~-- 351 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSD--VHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDFF-- 351 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCc--EEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCCC--
Confidence 688888999975 4566777 5553 2 232 379999999999998643 3455666665 678877764
Q ss_pred CHHHHHHHHHHHhcCchH-HHHHHHHHHHH
Q 012893 399 TKDETVNALKQVLSSEEG-KRMRENVGALK 427 (454)
Q Consensus 399 ~~~~l~~av~~vl~~~~~-~~~~~~a~~l~ 427 (454)
++++++++|.++++|++. ..+.+++++..
T Consensus 352 d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 352 DPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 799999999999998732 44555554433
No 58
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.08 E-value=1.6e-07 Score=93.55 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=67.3
Q ss_pred CCCceEeeccChH---hhhcccCcceEEec---CCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCC
Q 012893 325 KSYGKVVPWAPQL---KILEHSSVCVFVTH---CGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEK 397 (454)
Q Consensus 325 ~~nv~v~~~vp~~---~ll~~~~~~~~I~H---gG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 397 (454)
.++|.+.+++++. .++..++ ++|.. .|+ .++.||+++|+|+|+.... .....+++. +.|..++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCCC-
Confidence 3678888999864 6788877 76642 343 4899999999999986543 344556666 778877754
Q ss_pred CCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 012893 398 FTKDETVNALKQVLSSEE-GKRMRENVGAL 426 (454)
Q Consensus 398 ~~~~~l~~av~~vl~~~~-~~~~~~~a~~l 426 (454)
+.+++++++.++++|++ .+.+++++++.
T Consensus 354 -d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 354 -DPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78999999999998863 24555555543
No 59
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.08 E-value=8.2e-09 Score=101.15 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=85.2
Q ss_pred CCcEEEEeeCCCCCC-CHHHHHHHHHHHHhcCC-CEEEEEcCCcc--cccchhhhhhh--CCCceEeeccChH---hhhc
Q 012893 271 NASVIYISFGSMITP-PRAEVIALAEALEAIGF-PFLWSFRGNAE--EQLPKGFLERT--KSYGKVVPWAPQL---KILE 341 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~-~~i~~~~~~~~--~~l~~~~~~~~--~~nv~v~~~vp~~---~ll~ 341 (454)
+++.|++++|..... ....+..++++++.... +++++..++.. ..+.+...+.. .+|+.+.+..++. .++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 276 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLK 276 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHH
Confidence 345788888876543 34556677777765432 24444433221 12222111111 3678777665543 4565
Q ss_pred ccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 342 HSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 342 ~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
.++ ++|+.+| |.+.||+++|+|+|+++...+ +..+.+. |++..+.. +.+.|.+++.++++++
T Consensus 277 ~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~~---~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 277 NAD--LVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVGT---DPEAILAAIEKLLSDE 338 (363)
T ss_pred cCc--EEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecCC---CHHHHHHHHHHHhcCc
Confidence 566 9999999 888899999999999874322 3355667 87766642 5899999999999885
No 60
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.05 E-value=2e-08 Score=96.22 Aligned_cols=165 Identities=16% Similarity=0.067 Sum_probs=96.5
Q ss_pred CeEEec-cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCcccccc
Q 012893 241 KFLNVG-PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIG--FPFLWSFRGNAEEQLP 317 (454)
Q Consensus 241 ~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~ 317 (454)
++.+|| |+....... +.. + ++.++|.+--||-.+--...+..+.++..... ...++..+....
T Consensus 145 ~~~~VGhPl~d~~~~~---~~~----~---~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~---- 210 (347)
T PRK14089 145 KATYVGHPLLDEIKEF---KKD----L---DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKG---- 210 (347)
T ss_pred CCEEECCcHHHhhhhh---hhh----c---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcH----
Confidence 577999 766542211 101 1 22368999899886432333443334443321 122333332221
Q ss_pred hhhhhhhC--CCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeecccc--ccchhHHHHHHH---Hhhcee
Q 012893 318 KGFLERTK--SYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPV--FADQALNQRIIE---TAWGIG 390 (454)
Q Consensus 318 ~~~~~~~~--~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~--~~DQ~~nA~~v~---~~~G~G 390 (454)
+.+.+... ..+.+.+ .-..++..|+ ++|+-+|..|+ |++.+|+|||+ ++ ..-|+.||+++. .. |+.
T Consensus 211 ~~i~~~~~~~~~~~~~~--~~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~ 283 (347)
T PRK14089 211 KDLKEIYGDISEFEISY--DTHKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLA 283 (347)
T ss_pred HHHHHHHhcCCCcEEec--cHHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehH
Confidence 22222111 1233332 3356787777 99999999999 99999999997 44 467999999999 55 655
Q ss_pred ecC-------------cCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012893 391 VGV-------------XGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLA 430 (454)
Q Consensus 391 ~~~-------------~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~ 430 (454)
-.+ -.++.+++.|.+.+.+. .. +++++...++.+.+
T Consensus 284 Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~-~~---~~~~~~~~~l~~~l 332 (347)
T PRK14089 284 NIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM-DR---EKFFKKSKELREYL 332 (347)
T ss_pred HHhcCCCcccccCchhhcccCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHh
Confidence 444 24568899999988772 11 25555555555544
No 61
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.03 E-value=2.6e-07 Score=92.59 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=67.1
Q ss_pred CceEeeccCh-HhhhcccCcceEEec-----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCH
Q 012893 327 YGKVVPWAPQ-LKILEHSSVCVFVTH-----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTK 400 (454)
Q Consensus 327 nv~v~~~vp~-~~ll~~~~~~~~I~H-----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 400 (454)
++.+.+.... ..++..++ +++.. +|-.++.||+++|+|+|+-|..+++......+.+. |+++... +.
T Consensus 303 ~v~l~~~~~el~~~y~~aD--i~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~----d~ 375 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIAD--IAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE----DA 375 (425)
T ss_pred cEEEEecHHHHHHHHHhCC--EEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC----CH
Confidence 3444444433 46677777 64332 34446999999999999999988888888888788 8776633 68
Q ss_pred HHHHHHHHHHhcCchH-HHHHHHHHHHHH
Q 012893 401 DETVNALKQVLSSEEG-KRMRENVGALKK 428 (454)
Q Consensus 401 ~~l~~av~~vl~~~~~-~~~~~~a~~l~~ 428 (454)
+++++++.++++|++. +.+.+++++..+
T Consensus 376 ~~La~~l~~ll~~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 376 EDLAKAVTYLLTDPDARQAYGEAGVAFLK 404 (425)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999998732 455555555443
No 62
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.01 E-value=4.5e-07 Score=87.72 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=82.9
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhh-hhhhCCCceEeeccCh---HhhhcccCc
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGF-LERTKSYGKVVPWAPQ---LKILEHSSV 345 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~-~~~~~~nv~v~~~vp~---~~ll~~~~~ 345 (454)
..+++.+|+.... ..+.+...+..+... +.++++..++.....+.... .....+++.+.+++++ ..++..++
T Consensus 199 ~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d- 277 (374)
T cd03801 199 EPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAAD- 277 (374)
T ss_pred CeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcC-
Confidence 4566777876532 122233333333332 34555544332211111100 0113578899999974 46787777
Q ss_pred ceEEec----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 346 CVFVTH----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 346 ~~~I~H----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++|+- |.-+++.||+++|+|+|+.+. ......++.. +.|..++.. +.+++.+++.++++|+
T Consensus 278 -i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~--~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 278 -VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPG--DPEALAEAILRLLDDP 342 (374)
T ss_pred -EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCC--CHHHHHHHHHHHHcCh
Confidence 77743 456789999999999998765 4456666667 788887764 6899999999999986
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.00 E-value=6.3e-07 Score=86.12 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=84.3
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccC-hHhhhcccCcc
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAP-QLKILEHSSVC 346 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp-~~~ll~~~~~~ 346 (454)
..+++..|+.... ..+.+..++..+.+ .+.++++...+.....+.. ..+. ...++.+.++.. ...++..++
T Consensus 178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~ad-- 254 (348)
T cd03820 178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEA-LIKELGLEDRVILLGFTKNIEEYYAKAS-- 254 (348)
T ss_pred CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHH-HHHHcCCCCeEEEcCCcchHHHHHHhCC--
Confidence 3456667776542 23344444444443 3455555544332111111 1111 235677777644 357887777
Q ss_pred eEEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhc-eeecCcCCCCCHHHHHHHHHHHhcCchH-HHHH
Q 012893 347 VFVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWG-IGVGVXGEKFTKDETVNALKQVLSSEEG-KRMR 420 (454)
Q Consensus 347 ~~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G-~G~~~~~~~~~~~~l~~av~~vl~~~~~-~~~~ 420 (454)
++|..+. -+++.||+++|+|+|+.+..+.+. .+... | .|..++.. +.+++.+++.++++|++. ..++
T Consensus 255 ~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~~--~~~~~~~~i~~ll~~~~~~~~~~ 327 (348)
T cd03820 255 IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPNG--DVEALAEALLRLMEDEELRKRMG 327 (348)
T ss_pred EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCCC--CHHHHHHHHHHHHcCHHHHHHHH
Confidence 7776652 468999999999999876544332 23344 4 78777654 689999999999998732 3444
Q ss_pred HHHHHH
Q 012893 421 ENVGAL 426 (454)
Q Consensus 421 ~~a~~l 426 (454)
+++++.
T Consensus 328 ~~~~~~ 333 (348)
T cd03820 328 ANARES 333 (348)
T ss_pred HHHHHH
Confidence 444433
No 64
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.98 E-value=3.2e-07 Score=89.59 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred CCCceEeeccC-hH---hhhcccCcceEEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCC
Q 012893 325 KSYGKVVPWAP-QL---KILEHSSVCVFVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGE 396 (454)
Q Consensus 325 ~~nv~v~~~vp-~~---~ll~~~~~~~~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~ 396 (454)
..++...++++ +. .++..++ ++|.... -+++.||+++|+|+|+.... .....+... +.|..++..
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~~ 315 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKPG 315 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCCC
Confidence 46778889998 33 5677776 8887543 47999999999999976543 222334444 567666653
Q ss_pred CCCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 012893 397 KFTKDETVNALKQVLSSEE-GKRMRENVGA 425 (454)
Q Consensus 397 ~~~~~~l~~av~~vl~~~~-~~~~~~~a~~ 425 (454)
+.+++++++.++++|++ ...+.+++++
T Consensus 316 --~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 343 (365)
T cd03825 316 --DPEDLAEGIEWLLADPDEREELGEAARE 343 (365)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 78999999999998863 2334444443
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.97 E-value=8.8e-07 Score=87.65 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=86.1
Q ss_pred CcEEEEeeCCCCCC-CHHHHHHHHHHHHhc-----CCCEEEEEcCCcc--------cccchhhhh--hhCCCceEeeccC
Q 012893 272 ASVIYISFGSMITP-PRAEVIALAEALEAI-----GFPFLWSFRGNAE--------EQLPKGFLE--RTKSYGKVVPWAP 335 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~--------~~l~~~~~~--~~~~nv~v~~~vp 335 (454)
...+++..|+.... ..+.+..++..+.+. +.+++++.++... ..+.+...+ ...+||.+.+++|
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 34677778877543 233343444434332 4555555443221 011111111 1246899999999
Q ss_pred hH---hhhcccCcceEEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHH
Q 012893 336 QL---KILEHSSVCVFVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALK 408 (454)
Q Consensus 336 ~~---~ll~~~~~~~~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~ 408 (454)
.. .++..++ +++.... -.++.||+++|+|+|+.-..+ ....+..- +.|..++. +.++++++|.
T Consensus 290 ~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~~---~~~~~a~~i~ 359 (392)
T cd03805 290 DSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCEP---TPEEFAEAML 359 (392)
T ss_pred hHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeCC---CHHHHHHHHH
Confidence 75 5677777 6664322 247899999999999864433 33445555 67777652 7899999999
Q ss_pred HHhcCch-HHHHHHHHHHH
Q 012893 409 QVLSSEE-GKRMRENVGAL 426 (454)
Q Consensus 409 ~vl~~~~-~~~~~~~a~~l 426 (454)
++++|++ .+.+.+++++.
T Consensus 360 ~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 360 KLANDPDLADRMGAAGRKR 378 (392)
T ss_pred HHHhChHHHHHHHHHHHHH
Confidence 9999873 24455555443
No 66
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.97 E-value=3e-08 Score=97.28 Aligned_cols=128 Identities=14% Similarity=0.148 Sum_probs=80.5
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhc-----CCCEEEEEcCCcccccchhhhhh--hCCCceEeeccCh---Hhhhcc
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAI-----GFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQ---LKILEH 342 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~---~~ll~~ 342 (454)
+.++++++-..... ..+..+++++... +.++++..+++.. ....+.+. ..+|+.+.+.+++ ..++..
T Consensus 198 ~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 274 (365)
T TIGR00236 198 RYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNPV--VREPLHKHLGDSKRVHLIEPLEYLDFLNLAAN 274 (365)
T ss_pred CEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCChH--HHHHHHHHhCCCCCEEEECCCChHHHHHHHHh
Confidence 46666554332111 3355566655442 4566665444321 11112221 2358888876664 456666
Q ss_pred cCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 343 SSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 343 ~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++ ++|+.+|. .+.||+++|+|+|.++..++++. +.+. |.+..+. .++++|.+++.++++|+
T Consensus 275 ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~---~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 275 SH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG---TDKENITKAAKRLLTDP 335 (365)
T ss_pred CC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC---CCHHHHHHHHHHHHhCh
Confidence 66 89998874 47999999999999876565552 3346 7776653 37899999999999886
No 67
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.95 E-value=2.1e-06 Score=83.28 Aligned_cols=133 Identities=16% Similarity=0.125 Sum_probs=82.3
Q ss_pred CcEEEEeeCCCCCC-CHHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhhhh--hhCCCceEeeccChH---hhhccc
Q 012893 272 ASVIYISFGSMITP-PRAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGFLE--RTKSYGKVVPWAPQL---KILEHS 343 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~--~~~~nv~v~~~vp~~---~ll~~~ 343 (454)
...+++..|+.... ..+.+...+..+.+. +..+++...+.....+. ...+ ...+|+.+.+++++. .++..+
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALE-ALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHH-HHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 34667778877542 223333344444333 34444433222111111 1111 124688999999864 667777
Q ss_pred CcceEEec----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 344 SVCVFVTH----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 344 ~~~~~I~H----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+ ++|.. |.-+++.||+++|+|+|+-+.. .....++.. +.|..++.. +.+++.+++.++++++
T Consensus 280 d--~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~~--~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 280 D--VFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPPG--DPEALAEAILRLLADP 345 (377)
T ss_pred C--eeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECCC--CHHHHHHHHHHHhcCc
Confidence 7 66633 4567899999999999986543 345566666 777777654 8999999999999986
No 68
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.91 E-value=6.5e-07 Score=87.08 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=89.7
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhcC-CCEEEEEcCCcccccchhh-hhhhCCCceEeeccChH---hhhcccCcce
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAIG-FPFLWSFRGNAEEQLPKGF-LERTKSYGKVVPWAPQL---KILEHSSVCV 347 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~-~~~~~~nv~v~~~vp~~---~ll~~~~~~~ 347 (454)
..+++..|+.... .....+++++.... ..+++...+.....+.+-. ......||.+.+++|+. .++..++ +
T Consensus 191 ~~~i~~~G~~~~~--K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad--~ 266 (357)
T cd03795 191 RPFFLFVGRLVYY--KGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACD--V 266 (357)
T ss_pred CcEEEEecccccc--cCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCC--E
Confidence 4566778877532 33445666666554 6666665443211111111 01234689999999964 5777777 5
Q ss_pred EE--e---cCCch-hHHHHHHcCCCeeccccccchhHHHHHHHH-hhceeecCcCCCCCHHHHHHHHHHHhcCch-HHHH
Q 012893 348 FV--T---HCGWN-STIEGITGGVPMVCRPVFADQALNQRIIET-AWGIGVGVXGEKFTKDETVNALKQVLSSEE-GKRM 419 (454)
Q Consensus 348 ~I--~---HgG~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~-~~G~G~~~~~~~~~~~~l~~av~~vl~~~~-~~~~ 419 (454)
+| + +.|.| ++.||+++|+|+|+....+... .+.. . +.|..++.+ +.+++.++|.++++|++ ..++
T Consensus 267 ~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~~~--d~~~~~~~i~~l~~~~~~~~~~ 339 (357)
T cd03795 267 FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVPPG--DPAALAEAIRRLLEDPELRERL 339 (357)
T ss_pred EEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeCCC--CHHHHHHHHHHHHHCHHHHHHH
Confidence 55 2 23444 7999999999999876554443 3333 5 677777654 89999999999999873 2455
Q ss_pred HHHHHHHH
Q 012893 420 RENVGALK 427 (454)
Q Consensus 420 ~~~a~~l~ 427 (454)
++++++..
T Consensus 340 ~~~~~~~~ 347 (357)
T cd03795 340 GEAARERA 347 (357)
T ss_pred HHHHHHHH
Confidence 55555543
No 69
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.89 E-value=6.4e-06 Score=82.86 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCCceEeeccChHh---hhccc--CcceEEecC---Cc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcC
Q 012893 325 KSYGKVVPWAPQLK---ILEHS--SVCVFVTHC---GW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXG 395 (454)
Q Consensus 325 ~~nv~v~~~vp~~~---ll~~~--~~~~~I~Hg---G~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 395 (454)
.++|.+.+++++.. ++..+ +++++|..+ |+ .++.||+++|+|+|+.... .....++.. ..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCC
Confidence 46777778877654 35544 235888754 43 4899999999999987543 345555555 67888776
Q ss_pred CCCCHHHHHHHHHHHhcCchH-HHHHHHHH
Q 012893 396 EKFTKDETVNALKQVLSSEEG-KRMRENVG 424 (454)
Q Consensus 396 ~~~~~~~l~~av~~vl~~~~~-~~~~~~a~ 424 (454)
+ +++.++++|.++++|++. ..+.++++
T Consensus 391 ~--d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 391 L--DLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred C--CHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 5 789999999999998621 33444443
No 70
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.87 E-value=5.4e-06 Score=80.51 Aligned_cols=143 Identities=16% Similarity=0.212 Sum_probs=86.6
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhhhhh--hCCCceEeeccCh---HhhhcccC
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQ---LKILEHSS 344 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~---~~ll~~~~ 344 (454)
+..++.+|+.... ..+.+...+..+.+. +..+++...+.....+. .+.+. ..+||.+.+++|+ ..++..++
T Consensus 179 ~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad 257 (355)
T cd03799 179 PLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELE-ALIAELGLEDRVTLLGAKSQEEVRELLRAAD 257 (355)
T ss_pred CeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHH-HHHHHcCCCCeEEECCcCChHHHHHHHHhCC
Confidence 4566677876532 234444444444443 44555554433221111 11111 3478899999975 35677777
Q ss_pred cceEEec----------CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 345 VCVFVTH----------CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 345 ~~~~I~H----------gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++|.- |.-+++.||+++|+|+|+.+..+ ....++.. ..|..++.. +.+++.+++.++++|+
T Consensus 258 --i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~~~~~--~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 258 --LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLLVPPG--DPEALADAIERLLDDP 328 (355)
T ss_pred --EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEEeCCC--CHHHHHHHHHHHHhCH
Confidence 66663 33468999999999999876532 23345544 588887754 8899999999999987
Q ss_pred h-HHHHHHHHHH
Q 012893 415 E-GKRMRENVGA 425 (454)
Q Consensus 415 ~-~~~~~~~a~~ 425 (454)
+ ..++++++++
T Consensus 329 ~~~~~~~~~a~~ 340 (355)
T cd03799 329 ELRREMGEAGRA 340 (355)
T ss_pred HHHHHHHHHHHH
Confidence 3 2344444443
No 71
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.84 E-value=2e-06 Score=86.73 Aligned_cols=204 Identities=14% Similarity=0.178 Sum_probs=108.7
Q ss_pred CCHHHHHHHHhccCCeEEec-cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHH--h--cC
Q 012893 227 LDPIVVETLKSRFRKFLNVG-PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALE--A--IG 301 (454)
Q Consensus 227 l~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~--~--~~ 301 (454)
+|.+++ +..--++.||| |+...... .+...+..+-++..+++++|-+--||-.+-=...+..++++.+ . .+
T Consensus 371 FE~~~y---~~~gv~v~yVGHPL~d~i~~-~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~ 446 (608)
T PRK01021 371 FEQNLF---KDSPLRTVYLGHPLVETISS-FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLAST 446 (608)
T ss_pred cCHHHH---HhcCCCeEEECCcHHhhccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 455533 33334799999 88766331 1112222222333446688999999875422333444555554 2 24
Q ss_pred CCEEEEEcCCcccccchhhhhhh-CCC---ceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeecc-ccccch
Q 012893 302 FPFLWSFRGNAEEQLPKGFLERT-KSY---GKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCR-PVFADQ 376 (454)
Q Consensus 302 ~~~i~~~~~~~~~~l~~~~~~~~-~~n---v~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~-P~~~DQ 376 (454)
.++++...+... .+.+.+.. ..+ +.++.--....++..|+ +.+.-+| ..+.|++..|+|||++ -...=-
T Consensus 447 l~fvvp~a~~~~---~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD--~aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lt 520 (608)
T PRK01021 447 HQLLVSSANPKY---DHLILEVLQQEGCLHSHIVPSQFRYELMRECD--CALAKCG-TIVLETALNQTPTIVTCQLRPFD 520 (608)
T ss_pred eEEEEecCchhh---HHHHHHHHhhcCCCCeEEecCcchHHHHHhcC--eeeecCC-HHHHHHHHhCCCEEEEEecCHHH
Confidence 566665443321 11222211 111 23331101257787777 8888888 4678999999999964 222223
Q ss_pred hHHHHHHHH---h-hc-----eeecC-----c-CCCCCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhhCCCh
Q 012893 377 ALNQRIIET---A-WG-----IGVGV-----X-GEKFTKDETVNALKQVLSSEE-GKRMRENVGALKKLAFKAVESDGSS 440 (454)
Q Consensus 377 ~~nA~~v~~---~-~G-----~G~~~-----~-~~~~~~~~l~~av~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~ 440 (454)
+..|+++.+ . .+ +|..+ . .++.+++.|.+++ ++|.|++ .+++++..+++.+.+ +.+..+
T Consensus 521 y~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L----g~~~~~ 595 (608)
T PRK01021 521 TFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM----NESAST 595 (608)
T ss_pred HHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh----cCCCCC
Confidence 344555555 0 01 22222 1 3567999999996 8888862 234455554444444 445544
Q ss_pred HHHHH
Q 012893 441 TKNFK 445 (454)
Q Consensus 441 ~~~~~ 445 (454)
-+++.
T Consensus 596 ~~~~~ 600 (608)
T PRK01021 596 MKECL 600 (608)
T ss_pred HHHHH
Confidence 44443
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.83 E-value=3.5e-06 Score=80.98 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=80.1
Q ss_pred CcEEEEeeCCCCCC-CHHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhhhhh--hCCCceEeeccCh-HhhhcccCc
Q 012893 272 ASVIYISFGSMITP-PRAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQ-LKILEHSSV 345 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~-~~ll~~~~~ 345 (454)
++.+++..|+.... ....+...+..+... +.+++++..+.....+. ...+. ..+++.+.++.+. ..++..++
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~~~d- 265 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELE-ALAKELGLADRVHFLGFQSNPYPYLKAAD- 265 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHH-HHHHhcCCCccEEEecccCCHHHHHHhCC-
Confidence 34677778887532 223333344444432 45666654333211111 11111 2367888888775 47787777
Q ss_pred ceEEec----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHH---HHHHHHHhcCc
Q 012893 346 CVFVTH----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDET---VNALKQVLSSE 414 (454)
Q Consensus 346 ~~~I~H----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l---~~av~~vl~~~ 414 (454)
++|+- |.-+++.||+++|+|+|+.... .....+++. +.|..++.. +.+.+ .+.+.++++++
T Consensus 266 -~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~--~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 266 -LFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPVG--DEAALAAAALALLDLLLDP 333 (353)
T ss_pred -EEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECCC--CHHHHHHHHHHHHhccCCh
Confidence 66643 3356899999999999986443 556677777 888888764 66777 55566666665
No 73
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.83 E-value=8.5e-06 Score=79.20 Aligned_cols=143 Identities=20% Similarity=0.132 Sum_probs=81.4
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCccc-ccchhh--hhhhCCCceEeeccChH---hhhccc
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEE-QLPKGF--LERTKSYGKVVPWAPQL---KILEHS 343 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~--~~~~~~nv~v~~~vp~~---~ll~~~ 343 (454)
..+++..|+.... ..+.+..++..+.+ .+.+++++..+.... ..-... .....+++.+.+++++. .++..+
T Consensus 203 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 282 (375)
T cd03821 203 KRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADA 282 (375)
T ss_pred CcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhC
Confidence 4566677877532 22333333444443 345555544332210 000111 01134788889999954 457777
Q ss_pred CcceEEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchH-HH
Q 012893 344 SVCVFVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEG-KR 418 (454)
Q Consensus 344 ~~~~~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~-~~ 418 (454)
+ ++|...- -.++.||+++|+|+|+.+..+ ....+. . +.|...+. +.+++.+++.++++|++. +.
T Consensus 283 d--v~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~-~-~~~~~~~~---~~~~~~~~i~~l~~~~~~~~~ 351 (375)
T cd03821 283 D--LFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIE-Y-GCGWVVDD---DVDALAAALRRALELPQRLKA 351 (375)
T ss_pred C--EEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhh-c-CceEEeCC---ChHHHHHHHHHHHhCHHHHHH
Confidence 7 6665432 468999999999999876433 233332 2 56666654 449999999999998621 34
Q ss_pred HHHHHHHH
Q 012893 419 MRENVGAL 426 (454)
Q Consensus 419 ~~~~a~~l 426 (454)
+.+++++.
T Consensus 352 ~~~~~~~~ 359 (375)
T cd03821 352 MGENGRAL 359 (375)
T ss_pred HHHHHHHH
Confidence 44444443
No 74
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.81 E-value=1.1e-05 Score=79.05 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCCceEeeccChH---hhhcccCcceEEecC----------CchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceee
Q 012893 325 KSYGKVVPWAPQL---KILEHSSVCVFVTHC----------GWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGV 391 (454)
Q Consensus 325 ~~nv~v~~~vp~~---~ll~~~~~~~~I~Hg----------G~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~ 391 (454)
.+++.+.+++|+. .++..++ ++|..+ --+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 4788888999864 5587777 666432 246899999999999987654 366677777 8888
Q ss_pred cCcCCCCCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 012893 392 GVXGEKFTKDETVNALKQVLSSEE-GKRMRENVGA 425 (454)
Q Consensus 392 ~~~~~~~~~~~l~~av~~vl~~~~-~~~~~~~a~~ 425 (454)
.++.. +.+++.+++.++++|++ ..++++++++
T Consensus 317 ~~~~~--d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 317 LVPEG--DVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EECCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 88754 78999999999999863 2344444443
No 75
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.81 E-value=2.6e-06 Score=84.62 Aligned_cols=130 Identities=11% Similarity=0.162 Sum_probs=75.9
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccCh---HhhhcccC
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQ---LKILEHSS 344 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~---~~ll~~~~ 344 (454)
..+++..|..... ..+.+...+..+.+ .+..++++..+.....+. ...++ ..++|.+.+++|+ ..+++.++
T Consensus 193 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~-~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad 271 (398)
T cd03796 193 KITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLE-EMREKYNLQDRVELLGAVPHERVRDVLVQGH 271 (398)
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHH-HHHHHhCCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 4677777877532 22333333333332 345555554332211111 11122 2356888899985 35777777
Q ss_pred cceEEecC---Cch-hHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 345 VCVFVTHC---GWN-STIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 345 ~~~~I~Hg---G~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++|.-. |.| ++.||+++|+|+|+-+..+ ....++ . |.+.... .+.+++.+++.+++++.
T Consensus 272 --~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~~---~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 272 --IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLAE---PDVESIVRKLEEAISIL 334 (398)
T ss_pred --EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-CceeecC---CCHHHHHHHHHHHHhCh
Confidence 776533 444 9999999999999877643 223333 3 4333333 26899999999999864
No 76
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.80 E-value=6.5e-06 Score=80.06 Aligned_cols=148 Identities=13% Similarity=0.101 Sum_probs=89.3
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhh---h--hhCCCceEeeccC-hHhhhccc
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFL---E--RTKSYGKVVPWAP-QLKILEHS 343 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~---~--~~~~nv~v~~~vp-~~~ll~~~ 343 (454)
..+++..|..... ..+.+..++..+.+ .+.+++++..+.......+... + ...++|.+.++.+ ...++..+
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~a 264 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALA 264 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhC
Confidence 4566677776533 34455555555555 3455555544432211211111 1 1236788888865 35778777
Q ss_pred CcceEEecC----Cc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc-Cch-H
Q 012893 344 SVCVFVTHC----GW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS-SEE-G 416 (454)
Q Consensus 344 ~~~~~I~Hg----G~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~-~~~-~ 416 (454)
+ ++|+-+ |+ +++.||+++|+|+|+.... .....+... +.|..++.+ +.+.+.++|..++. +++ .
T Consensus 265 d--~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~ 335 (355)
T cd03819 265 D--IVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPPG--DAEALAQALDQILSLLPEGR 335 (355)
T ss_pred C--EEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCCC--CHHHHHHHHHHHHhhCHHHH
Confidence 7 565433 33 5999999999999976533 345566666 678887754 88999999976664 442 3
Q ss_pred HHHHHHHHHHHHH
Q 012893 417 KRMRENVGALKKL 429 (454)
Q Consensus 417 ~~~~~~a~~l~~~ 429 (454)
.++++++++..+.
T Consensus 336 ~~~~~~a~~~~~~ 348 (355)
T cd03819 336 AKMFAKARMCVET 348 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666655543
No 77
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.79 E-value=1.9e-06 Score=83.15 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=78.9
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccChH---hhhcccCcceEE
Q 012893 275 IYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQL---KILEHSSVCVFV 349 (454)
Q Consensus 275 v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~~---~ll~~~~~~~~I 349 (454)
+.+..|.... ......+++++++.+.++++...+.....+.....+. ..+++.+.+++++. .+++.++ +++
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d--~~v 248 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR--ALL 248 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc--EEE
Confidence 4445676642 2233456677777788877765553321111111111 24789999999975 4677777 555
Q ss_pred e----cCCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 350 T----HCGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 350 ~----HgG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
. +-|. .++.||+++|+|+|+.... .+...++.. ..|..++. .+++.+++.++++.
T Consensus 249 ~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~~----~~~l~~~l~~l~~~ 308 (335)
T cd03802 249 FPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVDS----VEELAAAVARADRL 308 (335)
T ss_pred eCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeCC----HHHHHHHHHHHhcc
Confidence 3 2343 4799999999999987653 233444443 46776653 89999999998764
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.78 E-value=3.4e-06 Score=82.56 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=92.5
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhhhh--hhCCCceEeeccCh--H---hhhcccC
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGFLE--RTKSYGKVVPWAPQ--L---KILEHSS 344 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~--~~~~nv~v~~~vp~--~---~ll~~~~ 344 (454)
.+++..|.........+..+++++... +.+++++..+.....+ ....+ ..+++|.+.+++++ . ..+..++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d 259 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVS 259 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCc
Confidence 455677776422223344555555543 4455555444322222 11111 13468888898753 2 2343445
Q ss_pred cceEEecC----CchhHHHHHHcCCCeeccc-cccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCch---H
Q 012893 345 VCVFVTHC----GWNSTIEGITGGVPMVCRP-VFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEE---G 416 (454)
Q Consensus 345 ~~~~I~Hg----G~gsv~eal~~GvP~i~~P-~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~---~ 416 (454)
++|... --.++.||+++|+|+|+.- ..+ ....++.- ..|..++.+ +.++++++|.++++|++ .
T Consensus 260 --~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~~--d~~~la~~i~~l~~~~~~~~~ 330 (359)
T PRK09922 260 --ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTPG--NIDEFVGKLNKVISGEVKYQH 330 (359)
T ss_pred --EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECCC--CHHHHHHHHHHHHhCcccCCH
Confidence 677543 2569999999999999765 332 33456555 678777654 89999999999999874 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 417 KRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 417 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
..++++++++.++ ..++.+.+..+.++
T Consensus 331 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 357 (359)
T PRK09922 331 DAIPNSIERFYEV---------LYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHHhhHH---------HHHHHHHHHHHHHh
Confidence 3344444444433 23355555555543
No 79
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.75 E-value=6.2e-08 Score=78.08 Aligned_cols=121 Identities=11% Similarity=0.126 Sum_probs=85.6
Q ss_pred cEEEEeeCCCCCCC---HHHHHHHHHHHHhcCC-CEEEEEcCCcccccchhhhhhh-CCCceE--eeccCh-HhhhcccC
Q 012893 273 SVIYISFGSMITPP---RAEVIALAEALEAIGF-PFLWSFRGNAEEQLPKGFLERT-KSYGKV--VPWAPQ-LKILEHSS 344 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~---~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~~~~~~-~~nv~v--~~~vp~-~~ll~~~~ 344 (454)
..+||+-||....+ --........+.+.|+ +.|+..|.+.. ..++...... .+...| .+|-|- .+..+.++
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Ad 82 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-FFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSAD 82 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-CCCCHHHhhcccCCeEEEEEecCccHHHHHhhcc
Confidence 37999999996321 1112345666777776 78888887642 1222222111 122333 477785 67777777
Q ss_pred cceEEecCCchhHHHHHHcCCCeecccc----ccchhHHHHHHHHhhceeecCcCCC
Q 012893 345 VCVFVTHCGWNSTIEGITGGVPMVCRPV----FADQALNQRIIETAWGIGVGVXGEK 397 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~GvP~i~~P~----~~DQ~~nA~~v~~~~G~G~~~~~~~ 397 (454)
+||+|+|+||++|.|..|+|.|+++- ..+|-.-|..+++. |.=.+....+
T Consensus 83 --lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ps~ 136 (170)
T KOG3349|consen 83 --LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTPST 136 (170)
T ss_pred --EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeeccc
Confidence 99999999999999999999999995 56899999999999 8877777653
No 80
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.74 E-value=2.5e-05 Score=75.93 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=83.4
Q ss_pred cEEEEeeCCCCCCC-HHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhh----hh--hhCCCceEee-ccCh---Hhh
Q 012893 273 SVIYISFGSMITPP-RAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGF----LE--RTKSYGKVVP-WAPQ---LKI 339 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~-~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~----~~--~~~~nv~v~~-~vp~---~~l 339 (454)
..+++.+|+..... .+.+...+..+.+. +..+++..++.......... .+ ...+||.+.+ |+|+ ..+
T Consensus 185 ~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~ 264 (366)
T cd03822 185 RPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPEL 264 (366)
T ss_pred CeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHH
Confidence 35566678775432 33333334444443 44555544332211100000 11 1346777775 4885 467
Q ss_pred hcccCcceEEec------CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 340 LEHSSVCVFVTH------CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 340 l~~~~~~~~I~H------gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
+..++ ++|.- |..+++.||+++|+|+|+.+..+ ...+... +.|..++.. +.+++.+++.++++|
T Consensus 265 ~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~~--d~~~~~~~l~~l~~~ 334 (366)
T cd03822 265 FSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPPG--DPAALAEAIRRLLAD 334 (366)
T ss_pred HhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcCC--CHHHHHHHHHHHHcC
Confidence 87777 66632 33458999999999999877654 3345556 778777664 689999999999998
Q ss_pred ch-HHHHHHHHHH
Q 012893 414 EE-GKRMRENVGA 425 (454)
Q Consensus 414 ~~-~~~~~~~a~~ 425 (454)
++ ..++++++++
T Consensus 335 ~~~~~~~~~~~~~ 347 (366)
T cd03822 335 PELAQALRARARE 347 (366)
T ss_pred hHHHHHHHHHHHH
Confidence 52 2334444443
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.70 E-value=6.5e-06 Score=80.12 Aligned_cols=131 Identities=12% Similarity=0.182 Sum_probs=77.4
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhh-hhCCCceEeeccCh-HhhhcccCcce
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLE-RTKSYGKVVPWAPQ-LKILEHSSVCV 347 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~-~~~~nv~v~~~vp~-~~ll~~~~~~~ 347 (454)
..+++..|+.... ..+.+...+..+.+ .+.+++++..+.....+.....+ ...+|+.+.++..+ ..++..++ +
T Consensus 188 ~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad--~ 265 (360)
T cd04951 188 TFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAAD--L 265 (360)
T ss_pred CEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhc--e
Confidence 4667777876532 12223333333322 25676666544322111111111 12357888887764 57787777 6
Q ss_pred EEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 348 FVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 348 ~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+|.-.. -+++.||+++|+|+|+. |...+...+++. |.... . -+.+++.+++.++++++
T Consensus 266 ~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~~~--~--~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 266 FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLIVP--I--SDPEALANKIDEILKMS 327 (360)
T ss_pred EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceEeC--C--CCHHHHHHHHHHHHhCC
Confidence 665433 56899999999999874 444556666655 65543 3 37899999999998543
No 82
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.70 E-value=1.2e-05 Score=78.99 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=83.1
Q ss_pred CcEEEEeeCCCCCC-CHHHH-HHHHHHHHhc-----CCCEEEEEcCCcccccchhhhhh--hCCCceEeeccC-hHhhhc
Q 012893 272 ASVIYISFGSMITP-PRAEV-IALAEALEAI-----GFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAP-QLKILE 341 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~-~~~~~-~~~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp-~~~ll~ 341 (454)
.+.++++.|..... ....+ +.+....... +..++++..+.....+. ...+. ...++.+.++.. ...++.
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~~~~~ 271 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACE-QMVRAAGLAHLVWLPGERDDVPALMQ 271 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHH-HHHHHcCCcceEEEcCCcCCHHHHHH
Confidence 35677788887643 22222 2222222221 34555554332211111 11111 224566666554 357888
Q ss_pred ccCcceEEe--c--CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchH-
Q 012893 342 HSSVCVFVT--H--CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEG- 416 (454)
Q Consensus 342 ~~~~~~~I~--H--gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~- 416 (454)
.++ ++|. + |--.++.||+++|+|+|+-... .+...++.- ..|..++.. +.++++++|.++++|++.
T Consensus 272 ~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~~--d~~~la~~i~~l~~~~~~~ 342 (374)
T TIGR03088 272 ALD--LFVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPPG--DAVALARALQPYVSDPAAR 342 (374)
T ss_pred hcC--EEEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCCC--CHHHHHHHHHHHHhCHHHH
Confidence 877 6663 2 3356999999999999986653 345566565 677777654 789999999999988622
Q ss_pred HHHHHHHHH
Q 012893 417 KRMRENVGA 425 (454)
Q Consensus 417 ~~~~~~a~~ 425 (454)
..+.+++++
T Consensus 343 ~~~~~~a~~ 351 (374)
T TIGR03088 343 RAHGAAGRA 351 (374)
T ss_pred HHHHHHHHH
Confidence 334444443
No 83
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.61 E-value=1.3e-05 Score=77.50 Aligned_cols=196 Identities=17% Similarity=0.138 Sum_probs=112.1
Q ss_pred CCeEEec-cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHH---Hh--cCCCEEEEEcCCcc
Q 012893 240 RKFLNVG-PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEAL---EA--IGFPFLWSFRGNAE 313 (454)
Q Consensus 240 ~~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~---~~--~~~~~i~~~~~~~~ 313 (454)
-++.||| |+...-..... +....+.+ ..+++++|-+--||-..--...+..++++. .+ .+.++++...+...
T Consensus 153 ~~~~~VGHPl~d~~~~~~~-~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~ 230 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKPEPD-RAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVH 230 (373)
T ss_pred CCeEEECCcchhhhccCCC-HHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHH
Confidence 4699999 87766443321 11222222 235667999999987532122223333333 22 35677776655432
Q ss_pred cccchhhhhhhCCCceEee-ccChHhhhcccCcceEEecCCchhHHHHHHcCCCeecc-ccccchhHHHHHHHHhhce--
Q 012893 314 EQLPKGFLERTKSYGKVVP-WAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCR-PVFADQALNQRIIETAWGI-- 389 (454)
Q Consensus 314 ~~l~~~~~~~~~~nv~v~~-~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~-P~~~DQ~~nA~~v~~~~G~-- 389 (454)
...-.........++.+.- .-.-..++..++ +.+.-+| +.+.|++..|+|||++ -...=-+..|+++.+. ..
T Consensus 231 ~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad--~al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~is 306 (373)
T PF02684_consen 231 EELIEEILAEYPPDVSIVIIEGESYDAMAAAD--AALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KYIS 306 (373)
T ss_pred HHHHHHHHHhhCCCCeEEEcCCchHHHHHhCc--chhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CEee
Confidence 1111111111223333332 223456777777 8888888 5788999999999865 3333344556665554 31
Q ss_pred ------eecC----cCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 012893 390 ------GVGV----XGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNF 444 (454)
Q Consensus 390 ------G~~~----~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 444 (454)
|..+ =.++.+++.|.+++.++++|+ ..++......+.+++.++.+.++....
T Consensus 307 L~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (373)
T PF02684_consen 307 LPNIIAGREVVPELIQEDATPENIAAELLELLENP---EKRKKQKELFREIRQLLGPGASSRAAQ 368 (373)
T ss_pred chhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhccCCHHHH
Confidence 1111 145679999999999999996 446666666666666666666655443
No 84
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.59 E-value=4e-05 Score=74.71 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=71.5
Q ss_pred EEeeCCCCCCCHHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhhh--hhhCCCceEeeccChH---hhhcccCcceE
Q 012893 276 YISFGSMITPPRAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGFL--ERTKSYGKVVPWAPQL---KILEHSSVCVF 348 (454)
Q Consensus 276 ~vs~Gs~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~--~~~~~nv~v~~~vp~~---~ll~~~~~~~~ 348 (454)
++..|+.... .....++++++.. +.+++++.++.......+... ....++|.+.+++++. .++..++ ++
T Consensus 196 i~~~G~~~~~--Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad--~~ 271 (363)
T cd04955 196 YLLVGRIVPE--NNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA--LF 271 (363)
T ss_pred EEEEeccccc--CCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC--EE
Confidence 4457877532 2344455555543 456665554422222222222 1234789999999975 4565555 66
Q ss_pred EecCCc-----hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 349 VTHCGW-----NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 349 I~HgG~-----gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+.++-. +++.||+++|+|+|+....+. ...++.. |.. ++.. +.+++++.++++|+
T Consensus 272 v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~~-g~~--~~~~----~~l~~~i~~l~~~~ 331 (363)
T cd04955 272 YLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGDK-AIY--FKVG----DDLASLLEELEADP 331 (363)
T ss_pred EeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecCC-eeE--ecCc----hHHHHHHHHHHhCH
Confidence 655443 479999999999998754421 1222223 333 2221 22999999999986
No 85
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.58 E-value=2.7e-05 Score=83.69 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=65.2
Q ss_pred CCCceEeeccChHh---hhcccC--cceEEec---CCch-hHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcC
Q 012893 325 KSYGKVVPWAPQLK---ILEHSS--VCVFVTH---CGWN-STIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXG 395 (454)
Q Consensus 325 ~~nv~v~~~vp~~~---ll~~~~--~~~~I~H---gG~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 395 (454)
.++|.+.+++++.. ++..++ .++||.- =|+| ++.||+++|+|+|+-...+ ....++.- .-|..++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 35777778887643 444441 2477775 3444 8899999999999876533 33444444 56777776
Q ss_pred CCCCHHHHHHHHHHHhcCchH-HHHHHHHHHHH
Q 012893 396 EKFTKDETVNALKQVLSSEEG-KRMRENVGALK 427 (454)
Q Consensus 396 ~~~~~~~l~~av~~vl~~~~~-~~~~~~a~~l~ 427 (454)
. +++.|+++|.++++|++. ..+.+++++..
T Consensus 622 ~--D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 622 H--DQQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred C--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 4 789999999999998732 45666655543
No 86
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.56 E-value=4.4e-05 Score=74.31 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=78.4
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhh-hhCCCceEeeccCh-HhhhcccCcce
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLE-RTKSYGKVVPWAPQ-LKILEHSSVCV 347 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~-~~~~nv~v~~~vp~-~~ll~~~~~~~ 347 (454)
+.+++..|+.... ..+.+...+..+.+ .+.+++++..+.....+.....+ ...+++.+.++..+ ..++..++ +
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad--i 269 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMD--V 269 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcC--E
Confidence 4666777877533 23334444444443 24566665443322111111111 12467888887544 57887777 7
Q ss_pred EEec----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 348 FVTH----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 348 ~I~H----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+|+- |--.++.||+++|+|+|+....+- ...++. +.|...... ++++++++|.++++|+
T Consensus 270 ~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~--~~~~~~~~~--~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 270 FLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD--LVKFLSLDE--SPEIWAEEILKLKSED 332 (358)
T ss_pred EEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc--CccEEeCCC--CHHHHHHHHHHHHhCc
Confidence 7754 345789999999999997655442 233333 344444332 5899999999999997
No 87
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.55 E-value=0.00021 Score=75.22 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=59.7
Q ss_pred CCCceEeecc-Ch---Hhhhcc-c-CcceEEecC---Cc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCc
Q 012893 325 KSYGKVVPWA-PQ---LKILEH-S-SVCVFVTHC---GW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVX 394 (454)
Q Consensus 325 ~~nv~v~~~v-p~---~~ll~~-~-~~~~~I~Hg---G~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~ 394 (454)
.++|...++. +. ..++.+ + +.++||.-+ |+ -++.||+++|+|+|+--.. -.+..|+.- .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeC
Confidence 3677777764 32 234432 2 124777543 33 4899999999999886443 355566666 6788887
Q ss_pred CCCCCHHHHHHHHHHHh----cCch-HHHHHHHHH
Q 012893 395 GEKFTKDETVNALKQVL----SSEE-GKRMRENVG 424 (454)
Q Consensus 395 ~~~~~~~~l~~av~~vl----~~~~-~~~~~~~a~ 424 (454)
.. +++.++++|.+++ +|++ .+.+.++++
T Consensus 693 p~--D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 693 PY--HGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred CC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 64 7899999999876 4652 244555443
No 88
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.54 E-value=0.00016 Score=71.45 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=84.7
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhhh---h---CCCceEe-eccCh---Hhhhc
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLER---T---KSYGKVV-PWAPQ---LKILE 341 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~~---~---~~nv~v~-~~vp~---~~ll~ 341 (454)
.+++..|.... ......++++++. .+..+++..++.....+.+.+.+. . .+++... +++++ ..++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 279 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS 279 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH
Confidence 45666777753 2334445555554 356766665543321111222111 1 1235543 67775 35677
Q ss_pred ccCcceEEecC---C-chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCH----HHHHHHHHHHhcC
Q 012893 342 HSSVCVFVTHC---G-WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTK----DETVNALKQVLSS 413 (454)
Q Consensus 342 ~~~~~~~I~Hg---G-~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~----~~l~~av~~vl~~ 413 (454)
.++ ++|+-+ | -.++.||+++|+|+|+... ......++.. +.|..++.++.+. +.+.++|.++++|
T Consensus 280 ~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 280 NAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred hCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHHHHHhC
Confidence 777 777532 2 3467999999999998654 3456667776 7888887653322 8999999999988
Q ss_pred chH-HHHHHHHHH
Q 012893 414 EEG-KRMRENVGA 425 (454)
Q Consensus 414 ~~~-~~~~~~a~~ 425 (454)
++. +.+.+++++
T Consensus 353 ~~~~~~~~~~a~~ 365 (388)
T TIGR02149 353 PELAKKMGIAGRK 365 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 632 344555444
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.54 E-value=6.3e-05 Score=73.95 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=53.5
Q ss_pred CCceEee-ccChH---hhhcccCcceEEe-c-C----C-chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCc
Q 012893 326 SYGKVVP-WAPQL---KILEHSSVCVFVT-H-C----G-WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVX 394 (454)
Q Consensus 326 ~nv~v~~-~vp~~---~ll~~~~~~~~I~-H-g----G-~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~ 394 (454)
+|+.+.. |+|+. .++..+| ++|. + . | -+++.||+++|+|+|+... ..+...+++- +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 5666654 78865 4487777 6663 1 1 2 2479999999999998643 2366777777 7898876
Q ss_pred CCCCCHHHHHHHHHHHh
Q 012893 395 GEKFTKDETVNALKQVL 411 (454)
Q Consensus 395 ~~~~~~~~l~~av~~vl 411 (454)
+.++++++|.++|
T Consensus 359 ----~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ----SSSELADQLLELL 371 (371)
T ss_pred ----CHHHHHHHHHHhC
Confidence 4789999988764
No 90
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.53 E-value=0.00017 Score=69.75 Aligned_cols=130 Identities=16% Similarity=0.137 Sum_probs=76.2
Q ss_pred cEEEEeeCCCCCCC-HHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhhhh---hhCCCceEeeccC-hHhhhcccCc
Q 012893 273 SVIYISFGSMITPP-RAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGFLE---RTKSYGKVVPWAP-QLKILEHSSV 345 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~-~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~~---~~~~nv~v~~~vp-~~~ll~~~~~ 345 (454)
..+++..|+..... .+.+...+..+.+ .+.+++++..+...... ..... ...+++.+.+... ...++..++
T Consensus 193 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad- 270 (365)
T cd03807 193 TFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANL-ELLALKELGLEDKVILLGERSDVPALLNALD- 270 (365)
T ss_pred CeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHH-HHHHHHhcCCCceEEEccccccHHHHHHhCC-
Confidence 46667788776432 2333333333322 34566555433221111 11111 1235666666554 357887777
Q ss_pred ceEEecCCc----hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 346 CVFVTHCGW----NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 346 ~~~I~HgG~----gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++|..+.. +++.||+++|+|+|+.... .+...+.+. |. .++.+ +.+++.+++.++++|+
T Consensus 271 -i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~~-g~--~~~~~--~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 271 -VFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGDT-GF--LVPPG--DPEALAEAIEALLADP 333 (365)
T ss_pred -EEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhcC-CE--EeCCC--CHHHHHHHHHHHHhCh
Confidence 88876554 7999999999999985443 344444444 44 44433 6899999999999986
No 91
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.51 E-value=0.00025 Score=70.58 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=86.5
Q ss_pred cEEEEeeCCCCCCC-HHHHHHHHHHHHhc--CCCEEEEEcCCcccccchhhhh-hhCCCceEeeccChH---hhhcccCc
Q 012893 273 SVIYISFGSMITPP-RAEVIALAEALEAI--GFPFLWSFRGNAEEQLPKGFLE-RTKSYGKVVPWAPQL---KILEHSSV 345 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~-~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~-~~~~nv~v~~~vp~~---~ll~~~~~ 345 (454)
+..+++.|...... .+.+...+..+.+. +.+++++..+.....+.....+ ...++|.+.+|+|+. .++..++
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aD- 300 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDAD- 300 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCC-
Confidence 45566678775321 23333333333332 3455554443322222211111 134678889999974 5677777
Q ss_pred ceEEec---------CCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc-Cc
Q 012893 346 CVFVTH---------CGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS-SE 414 (454)
Q Consensus 346 ~~~I~H---------gG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~-~~ 414 (454)
++|.- -|. .++.||+++|+|+|+....+ ....++.- ..|..++.+ +.++++++|.++++ |+
T Consensus 301 -v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~lv~~~--d~~~la~ai~~l~~~d~ 372 (406)
T PRK15427 301 -VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGWLVPEN--DAQALAQRLAAFSQLDT 372 (406)
T ss_pred -EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceEEeCCC--CHHHHHHHHHHHHhCCH
Confidence 77653 344 46899999999999875432 44455555 678777764 79999999999998 76
Q ss_pred h-HHHHHHHHHH
Q 012893 415 E-GKRMRENVGA 425 (454)
Q Consensus 415 ~-~~~~~~~a~~ 425 (454)
+ .+.+.+++++
T Consensus 373 ~~~~~~~~~ar~ 384 (406)
T PRK15427 373 DELAPVVKRARE 384 (406)
T ss_pred HHHHHHHHHHHH
Confidence 3 2445555544
No 92
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.50 E-value=5.5e-06 Score=80.92 Aligned_cols=128 Identities=14% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCcEEEEeeCCCC---CCCHHHHHHHHHHHHhcCCCEEEEEcCCcc--cccchhhhhhh--CCCceEeeccC---hHhhh
Q 012893 271 NASVIYISFGSMI---TPPRAEVIALAEALEAIGFPFLWSFRGNAE--EQLPKGFLERT--KSYGKVVPWAP---QLKIL 340 (454)
Q Consensus 271 ~~~~v~vs~Gs~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~~~~--~~nv~v~~~vp---~~~ll 340 (454)
+++.|+|++=... ....+.+..+++++...+.++++..+.... ..+.+...+.. .+|+.+.+.++ ...++
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll 279 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLL 279 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHH
Confidence 3467778775443 224577889999998877666665433211 11111222211 36788886554 56888
Q ss_pred cccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 341 EHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 341 ~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
++|+ ++|+.++.|. .||.+.|+|.|.+- +.+ .-+ +. |.. +.+. .++++|.+++.++++
T Consensus 280 ~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~-g~nvl~vg---~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 280 KNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LR-ADSVIDVD---PDKEEIVKAIEKLLD 338 (365)
T ss_pred HhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hh-cCeEEEeC---CCHHHHHHHHHHHhC
Confidence 8888 9999887666 99999999999773 211 111 22 322 2232 478999999999554
No 93
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=0.0002 Score=68.79 Aligned_cols=325 Identities=13% Similarity=0.108 Sum_probs=181.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcC--CCcEEEEEEe-CCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAAL--EEEVTFSFFS-TAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNP 88 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~--G~~h~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (454)
-.+.+-.-+-|-+.-.++|.++| +++ + ..|++-+ ++...+.+.+. ++ ..+...-+|-++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l--~~~~P~--~~ilvTt~T~Tg~e~a~~~---~~-~~v~h~YlP~D~---------- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRAL--RERFPD--LRILVTTMTPTGAERAAAL---FG-DSVIHQYLPLDL---------- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHH--HHhCCC--CCEEEEecCccHHHHHHHH---cC-CCeEEEecCcCc----------
Confidence 45666667999999999999999 666 7 7888877 55555666555 22 112222232011
Q ss_pred cchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHH--HHHHcCCCeEEEeCc-hhhhhhhhhchhHHHhhh
Q 012893 89 REPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAE--MAEEMRVPWIAYWTA-GPRSLLAHVDSDIIREII 165 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~--~A~~lgiP~v~~~~~-~~~~~~~~~~~~~~~~~~ 165 (454)
.. .+++.++.. +||++|.---..|... -++..|||.+.+..- +..++..
T Consensus 112 ~~---------------~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~----------- 163 (419)
T COG1519 112 PI---------------AVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFAR----------- 163 (419)
T ss_pred hH---------------HHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHH-----------
Confidence 11 122233333 9998765545554444 557899999997420 0000000
Q ss_pred CCCCCCCCccccCCCCCcCCcCCCCCcccCCCCCCcHHHHHHHhccccCCccEEEecCcccCCHHHHHHHHhc-cCCeEE
Q 012893 166 GVNGPENQTLESIPGFSSIRAKDLPEGIISGPLDSPFPIMLDKMGKTLPKATVVAINSYEELDPIVVETLKSR-FRKFLN 244 (454)
Q Consensus 166 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 244 (454)
......+...+ +...++++.++-. +. +..... .+++..
T Consensus 164 ---------------------------------y~k~~~~~~~~---~~~i~li~aQse~--D~---~Rf~~LGa~~v~v 202 (419)
T COG1519 164 ---------------------------------YAKLKFLARLL---FKNIDLILAQSEE--DA---QRFRSLGAKPVVV 202 (419)
T ss_pred ---------------------------------HHHHHHHHHHH---HHhcceeeecCHH--HH---HHHHhcCCcceEE
Confidence 00112222222 2234555554421 11 111222 245888
Q ss_pred eccCCCCCCCCCCCCCCccchhccCCC-CcEEEEeeCCCCCCCHHHHHHHHHHHHhc--CCCEEEEEcCCcccccc--hh
Q 012893 245 VGPSTLTSPPPVSDPHGCLPWLNEHEN-ASVIYISFGSMITPPRAEVIALAEALEAI--GFPFLWSFRGNAEEQLP--KG 319 (454)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~l~~~~~-~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~--~~ 319 (454)
+|-+--........+..+..|-..-+. |+ +.|..+| .....+........+.+. +..+||+-+-.. ..+ ++
T Consensus 203 ~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~-v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpE--Rf~~v~~ 278 (419)
T COG1519 203 TGNLKFDIEPPPQLAAELAALRRQLGGHRP-VWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPE--RFKAVEN 278 (419)
T ss_pred ecceeecCCCChhhHHHHHHHHHhcCCCCc-eEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChh--hHHHHHH
Confidence 887654433221111122233322222 43 4444444 444555555666666553 345555544211 000 00
Q ss_pred hhhh---------------hCCCceEeeccCh-HhhhcccCc----ceEEecCCchhHHHHHHcCCCeeccccccchhHH
Q 012893 320 FLER---------------TKSYGKVVPWAPQ-LKILEHSSV----CVFVTHCGWNSTIEGITGGVPMVCRPVFADQALN 379 (454)
Q Consensus 320 ~~~~---------------~~~nv~v~~~vp~-~~ll~~~~~----~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~n 379 (454)
..+. ...+|.+.+-+-- ..++.-+++ +-++-+||+| ..|++++|+|+|.-|+..-|..-
T Consensus 279 l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei 357 (419)
T COG1519 279 LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDI 357 (419)
T ss_pred HHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHH
Confidence 0000 1126677766654 344444543 2234588887 67999999999999999999999
Q ss_pred HHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHH
Q 012893 380 QRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEE-GKRMRENVGALKKLAFKA 433 (454)
Q Consensus 380 A~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~-~~~~~~~a~~l~~~~~~~ 433 (454)
++++++. |.|+.++. .+.|.+++..+++|++ ...|.+++.++-...+.+
T Consensus 358 ~~~l~~~-ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ga 407 (419)
T COG1519 358 AERLLQA-GAGLQVED----ADLLAKAVELLLADEDKREAYGRAGLEFLAQNRGA 407 (419)
T ss_pred HHHHHhc-CCeEEECC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999983 7889999999888763 255666666655555543
No 94
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.42 E-value=0.001 Score=65.52 Aligned_cols=125 Identities=15% Similarity=0.125 Sum_probs=70.4
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChH---hhhcccCcceEE
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQL---KILEHSSVCVFV 349 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~---~ll~~~~~~~~I 349 (454)
.+++.+|++... ..+.+..++. ...+..++++..++..... ... ...+||.+.+++|+. .++.++++.++-
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~--~~p~~~~vliG~~~~~~~~-~~~--~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P 280 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAK--ARPDWSFVLIGPVDVSIDP-SAL--LRLPNVHYLGPKPYKELPAYLAGFDVAILP 280 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHH--HCCCCEEEEECCCcCccCh-hHh--ccCCCEEEeCCCCHHHHHHHHHhCCEEecC
Confidence 455567888642 2222222221 1245666665443111111 111 113799999999865 567777733321
Q ss_pred ------ecCCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 350 ------THCGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 350 ------~HgG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+.++. +.+.|++++|+|+|..+. ...++.. +.+.... + +.+++.++|.+++.++
T Consensus 281 ~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~~~~~~~-~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 281 FRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-DEVVLIA-D--DPEEFVAAIEKALLED 341 (373)
T ss_pred CccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-CcEEEeC-C--CHHHHHHHHHHHHhcC
Confidence 22333 358999999999998763 2233333 4333333 2 7999999999987654
No 95
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=3.3e-06 Score=66.98 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=83.4
Q ss_pred EEEeeCCCCCCCHHHHH--HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEe--eccCh-HhhhcccCcceEE
Q 012893 275 IYISFGSMITPPRAEVI--ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVV--PWAPQ-LKILEHSSVCVFV 349 (454)
Q Consensus 275 v~vs~Gs~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~--~~vp~-~~ll~~~~~~~~I 349 (454)
+||+-||....=...+. ++.+-.+.-..++|+..|+... .| +.+ ..+. ++.+- ..+...++ ++|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--kp------vag-l~v~~F~~~~kiQsli~dar--IVI 70 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--KP------VAG-LRVYGFDKEEKIQSLIHDAR--IVI 70 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--cc------ccc-cEEEeechHHHHHHHhhcce--EEE
Confidence 78999999542111111 2222233334589999998643 12 112 2444 44453 45665555 999
Q ss_pred ecCCchhHHHHHHcCCCeeccccc--------cchhHHHHHHHHhhceeecCcCCCC-CHHHHHHHHHHHhc
Q 012893 350 THCGWNSTIEGITGGVPMVCRPVF--------ADQALNQRIIETAWGIGVGVXGEKF-TKDETVNALKQVLS 412 (454)
Q Consensus 350 ~HgG~gsv~eal~~GvP~i~~P~~--------~DQ~~nA~~v~~~~G~G~~~~~~~~-~~~~l~~av~~vl~ 412 (454)
+|+|.||+..++..++|.|++|-. .+|..-|..+.+. +.=+.+.+.+. -.+-+.....+++.
T Consensus 71 SHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 71 SHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred eccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcCCchhhHHhHhhhhhhhcC
Confidence 999999999999999999999964 3688899999999 88888876443 33444555555553
No 96
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.38 E-value=2.1e-05 Score=78.07 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=63.1
Q ss_pred CCCceEeeccCh-HhhhcccCcceEE--ec--CCch-hHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCC
Q 012893 325 KSYGKVVPWAPQ-LKILEHSSVCVFV--TH--CGWN-STIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKF 398 (454)
Q Consensus 325 ~~nv~v~~~vp~-~~ll~~~~~~~~I--~H--gG~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 398 (454)
.++|.+.++++. ..++..++ ++| ++ .|.+ .+.||+++|+|+|+.+...+.. .+.. |.|..+. -
T Consensus 279 ~~~V~~~G~v~~~~~~~~~ad--v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~---~ 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAA--VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA---A 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCC--EEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC---C
Confidence 368888899985 46777777 666 32 3544 6999999999999987643321 1234 6676665 2
Q ss_pred CHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 012893 399 TKDETVNALKQVLSSEE-GKRMRENVGAL 426 (454)
Q Consensus 399 ~~~~l~~av~~vl~~~~-~~~~~~~a~~l 426 (454)
++++++++|.++++|++ .+.+.+++++.
T Consensus 348 ~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 348 DPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 78999999999999873 24455555443
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.0007 Score=71.15 Aligned_cols=145 Identities=14% Similarity=0.049 Sum_probs=84.3
Q ss_pred EEEEeeCCCCCC-CHHHH-HHHHHHHHh-cCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccCh-HhhhcccCcce
Q 012893 274 VIYISFGSMITP-PRAEV-IALAEALEA-IGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQ-LKILEHSSVCV 347 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~-~~ll~~~~~~~ 347 (454)
.+++..|..... ....+ +.+...... .+.+++++..+.....+- .+.+. ..++|.+.+|.+. ..++..++ +
T Consensus 518 ~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~-~l~~~lgL~~~V~flG~~~dv~~ll~aaD--v 594 (694)
T PRK15179 518 FTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVR-EFAQRLGMGERILFTGLSRRVGYWLTQFN--A 594 (694)
T ss_pred eEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHH-HHHHHcCCCCcEEEcCCcchHHHHHHhcC--E
Confidence 455566765432 22222 222222223 345655554433221111 12222 2367888898875 46777777 6
Q ss_pred EEe---cCC-chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCch-HHHHHHH
Q 012893 348 FVT---HCG-WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEE-GKRMREN 422 (454)
Q Consensus 348 ~I~---HgG-~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~-~~~~~~~ 422 (454)
+|. +.| -+++.||+++|+|+|+.... .....|+.- ..|..++.++.+++.+.+++.+++.+.. .+.++++
T Consensus 595 ~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ 669 (694)
T PRK15179 595 FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADTVTAPDVAEALARIHDMCAADPGIARK 669 (694)
T ss_pred EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHH
Confidence 665 445 45899999999999987543 345556665 6788888776677788888877765421 1356665
Q ss_pred HHHH
Q 012893 423 VGAL 426 (454)
Q Consensus 423 a~~l 426 (454)
+++.
T Consensus 670 ar~~ 673 (694)
T PRK15179 670 AADW 673 (694)
T ss_pred HHHH
Confidence 5444
No 98
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.35 E-value=3.5e-05 Score=74.91 Aligned_cols=130 Identities=8% Similarity=0.056 Sum_probs=76.0
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHhcC--CCEEEEEcCCcccccchhh--hhhhCCCceEeeccChH---hhhcccCc
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEAIG--FPFLWSFRGNAEEQLPKGF--LERTKSYGKVVPWAPQL---KILEHSSV 345 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~~--~~~~~~nv~v~~~vp~~---~ll~~~~~ 345 (454)
.+++..|+.... ..+.+...+..+.+.+ ..+++...+......-... .....+|+.+.+++|+. .++..++
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d- 274 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR- 274 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh-
Confidence 455667777543 2344444444444443 5665554333211111110 01234788888999864 5677777
Q ss_pred ceEEec----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 346 CVFVTH----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 346 ~~~I~H----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++|.. |..+++.||+++|+|+|+....+ ....+.+ .|..+... +.+++.+++.++++|+
T Consensus 275 -~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~~--~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 275 -AFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDPL--DPEALAAAIERLLEDP 337 (365)
T ss_pred -hhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCCC--CHHHHHHHHHHHhcCH
Confidence 55533 33458999999999999865422 1112222 24444443 7899999999999887
No 99
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=6.3e-05 Score=71.35 Aligned_cols=201 Identities=16% Similarity=0.159 Sum_probs=114.4
Q ss_pred eEEec-cCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHH---HHHHHHHHH-h-cCCCEEEEEcCCcccc
Q 012893 242 FLNVG-PSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAE---VIALAEALE-A-IGFPFLWSFRGNAEEQ 315 (454)
Q Consensus 242 ~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~---~~~~~~~~~-~-~~~~~i~~~~~~~~~~ 315 (454)
.+||| |+....+ -.+..+.+.+-+....+++++.+.-||-.+--... +...+..+. + .+.++++-+.+...+.
T Consensus 158 ~~yVGHpl~d~i~-~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~ 236 (381)
T COG0763 158 CTYVGHPLADEIP-LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRR 236 (381)
T ss_pred eEEeCChhhhhcc-ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHH
Confidence 89999 7776654 22233334444555567789999999986421222 222333333 2 4678888877655333
Q ss_pred cchhhhhhhC--CCceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccc-cccchhHHHHHHHHhhcee--
Q 012893 316 LPKGFLERTK--SYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRP-VFADQALNQRIIETAWGIG-- 390 (454)
Q Consensus 316 l~~~~~~~~~--~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P-~~~DQ~~nA~~v~~~~G~G-- 390 (454)
+-..+.+... -+..+.+.-- ...+..|| +.+.-+|. -+.|++.+|+|||+.= ...=-...|.+..+.|=++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~aD--~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLp 312 (381)
T COG0763 237 IIEEALKWEVAGLSLILIDGEK-RKAFAAAD--AALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLP 312 (381)
T ss_pred HHHHHhhccccCceEEecCchH-HHHHHHhh--HHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccch
Confidence 3222221111 1112222111 23565565 77777774 5789999999998652 1112233444444442222
Q ss_pred -----ecCc----CCCCCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 391 -----VGVX----GEKFTKDETVNALKQVLSSE-EGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 391 -----~~~~----~~~~~~~~l~~av~~vl~~~-~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
..+- .+..+++.|++++..+++|+ +.+.+++...++.+.++. +.++....+.+++.+
T Consensus 313 NIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~ 379 (381)
T COG0763 313 NILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELL 379 (381)
T ss_pred HHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHh
Confidence 1111 34568999999999999997 335777777777777776 335555555555544
No 100
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.32 E-value=0.00014 Score=71.56 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=79.0
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEcCCcccc----cchhhhh--hhCCCceEeecc--Ch---Hhh
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFRGNAEEQ----LPKGFLE--RTKSYGKVVPWA--PQ---LKI 339 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~----l~~~~~~--~~~~nv~v~~~v--p~---~~l 339 (454)
.+++..|.+... ..+.+...+..+.+ .+.+++++.++..... .-+...+ ...+++.+.++. +. ..+
T Consensus 191 ~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 270 (372)
T cd03792 191 PYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNAL 270 (372)
T ss_pred cEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHH
Confidence 455677877543 22333333333332 3556666655432110 0111111 123577777776 43 256
Q ss_pred hcccCcceEEecC---C-chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCch
Q 012893 340 LEHSSVCVFVTHC---G-WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEE 415 (454)
Q Consensus 340 l~~~~~~~~I~Hg---G-~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~ 415 (454)
++.++ +++..+ | -.++.||+++|+|+|+....+ ....+..- ..|..++ +.+.++.++.++++|++
T Consensus 271 ~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~----~~~~~a~~i~~ll~~~~ 339 (372)
T cd03792 271 QRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD----TVEEAAVRILYLLRDPE 339 (372)
T ss_pred HHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC----CcHHHHHHHHHHHcCHH
Confidence 66666 787644 2 348999999999999875432 23345555 5676554 45778889999998862
Q ss_pred -HHHHHHHHHH
Q 012893 416 -GKRMRENVGA 425 (454)
Q Consensus 416 -~~~~~~~a~~ 425 (454)
.+.+.+++++
T Consensus 340 ~~~~~~~~a~~ 350 (372)
T cd03792 340 LRRKMGANARE 350 (372)
T ss_pred HHHHHHHHHHH
Confidence 2344444443
No 101
>PLN02949 transferase, transferring glycosyl groups
Probab=98.32 E-value=0.00052 Score=69.13 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=61.3
Q ss_pred CCCceEeeccChH---hhhcccCcceEEe---cCCch-hHHHHHHcCCCeeccccccchhHHHHHHHH--hhceeecCcC
Q 012893 325 KSYGKVVPWAPQL---KILEHSSVCVFVT---HCGWN-STIEGITGGVPMVCRPVFADQALNQRIIET--AWGIGVGVXG 395 (454)
Q Consensus 325 ~~nv~v~~~vp~~---~ll~~~~~~~~I~---HgG~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~--~~G~G~~~~~ 395 (454)
.++|.+.+++|+. .++..++ ++|+ +-|+| ++.||+++|+|.|+....+- ....+.. .-..|...+
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp---~~eIV~~~~~g~tG~l~~- 407 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGP---KMDIVLDEDGQQTGFLAT- 407 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCC---cceeeecCCCCcccccCC-
Confidence 4688888999854 5677776 6663 34555 79999999999998765431 0001111 101233321
Q ss_pred CCCCHHHHHHHHHHHhcC-ch-HHHHHHHHHHHHHHH
Q 012893 396 EKFTKDETVNALKQVLSS-EE-GKRMRENVGALKKLA 430 (454)
Q Consensus 396 ~~~~~~~l~~av~~vl~~-~~-~~~~~~~a~~l~~~~ 430 (454)
+.+++++++.+++++ ++ .+++.+++++..+++
T Consensus 408 ---~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 408 ---TVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred ---CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 789999999999985 32 245666666654443
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.30 E-value=0.00029 Score=71.50 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=74.3
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcc-cccchhhhhhhCCCceE-eeccCh--HhhhcccCcce
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAE-EQLPKGFLERTKSYGKV-VPWAPQ--LKILEHSSVCV 347 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~~~~~~nv~v-~~~vp~--~~ll~~~~~~~ 347 (454)
..+++..|..... ..+.+...+..+.+.+.+++++..+... ...-..+.+..+.++.+ .++-.. ..++..++ +
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aD--v 359 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGAD--M 359 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCC--E
Confidence 3566677777532 2233333333333347777777443211 00001122233456554 355322 24676666 7
Q ss_pred EEec---CCch-hHHHHHHcCCCeecccccc--chhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 348 FVTH---CGWN-STIEGITGGVPMVCRPVFA--DQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 348 ~I~H---gG~g-sv~eal~~GvP~i~~P~~~--DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+|.- -|+| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++.. +++.+.+++.++++
T Consensus 360 ~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 360 FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDF--NAEDLLRALRRALE 427 (466)
T ss_pred EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCC--CHHHHHHHHHHHHH
Confidence 7754 3555 7889999999999865432 211111111234 667777764 78999999999886
No 103
>PLN00142 sucrose synthase
Probab=98.28 E-value=0.0003 Score=74.14 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=49.4
Q ss_pred ceEEec---CCch-hHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHh----cCch-H
Q 012893 346 CVFVTH---CGWN-STIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVL----SSEE-G 416 (454)
Q Consensus 346 ~~~I~H---gG~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl----~~~~-~ 416 (454)
++||.- -|+| ++.||+++|+|+|+-... -....|+.- .-|..++.. +++.++++|.+++ +|++ .
T Consensus 668 DVfVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV~P~--D~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 668 GAFVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHIDPY--HGDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred CEEEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCCC--CHHHHHHHHHHHHHHhcCCHHHH
Confidence 477764 4555 899999999999886543 355566665 678888764 7888888887654 5653 2
Q ss_pred HHHHHHHHH
Q 012893 417 KRMRENVGA 425 (454)
Q Consensus 417 ~~~~~~a~~ 425 (454)
+.+.+++++
T Consensus 741 ~~mg~~Ar~ 749 (815)
T PLN00142 741 NKISDAGLQ 749 (815)
T ss_pred HHHHHHHHH
Confidence 445555433
No 104
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.25 E-value=0.0017 Score=66.09 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=76.3
Q ss_pred cEEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhh---hhhhCCCceEeeccChH---hhhcccCc
Q 012893 273 SVIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGF---LERTKSYGKVVPWAPQL---KILEHSSV 345 (454)
Q Consensus 273 ~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---~~~~~~nv~v~~~vp~~---~ll~~~~~ 345 (454)
..+++..|..... ..+.+...+..+.+.+.+++++..+.. ...+.+ .+..+.++.+....+.. .++..++
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD- 367 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDP--ELEEALRELAERYPGNVRVIIGYDEALAHLIYAGAD- 367 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCH--HHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCC-
Confidence 3456667777542 233444444444445667766654421 111222 22334567666555543 4666666
Q ss_pred ceEEecC---Cch-hHHHHHHcCCCeecccccc--chhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 346 CVFVTHC---GWN-STIEGITGGVPMVCRPVFA--DQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 346 ~~~I~Hg---G~g-sv~eal~~GvP~i~~P~~~--DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++.-. |.| +.+||+++|+|.|+....+ |.-.+...-... +.|..++.. +++++.++|.++++
T Consensus 368 -v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~~--d~~~la~~i~~~l~ 436 (473)
T TIGR02095 368 -FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEEY--DPGALLAALSRALR 436 (473)
T ss_pred -EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCCC--CHHHHHHHHHHHHH
Confidence 777643 444 7889999999999765532 211111000233 567777654 78999999999887
No 105
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.20 E-value=0.0003 Score=69.00 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=88.4
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHH-h-cCCCEEEEEcCCcccccchhhhh-hhCCCceEeeccCh-HhhhcccCcceE
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALE-A-IGFPFLWSFRGNAEEQLPKGFLE-RTKSYGKVVPWAPQ-LKILEHSSVCVF 348 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~l~~~~~~-~~~~nv~v~~~vp~-~~ll~~~~~~~~ 348 (454)
..+++.|..... ....+...+..+. . .+.++++...+.....+.....+ ...+++.+.++.++ ..++..+++-++
T Consensus 205 ~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ 284 (372)
T cd04949 205 HKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLL 284 (372)
T ss_pred CeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEe
Confidence 445567776432 1222222222222 2 34566665544322112111111 13357777777664 477888874344
Q ss_pred Eec--CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 012893 349 VTH--CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEE-GKRMRENVGA 425 (454)
Q Consensus 349 I~H--gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~-~~~~~~~a~~ 425 (454)
.++ |...++.||+++|+|+|+..... .....++.- ..|..++.. +.++++++|.++++|++ .+.+.+++++
T Consensus 285 ~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~ 358 (372)
T cd04949 285 TSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPKG--DIEALAEAIIELLNDPKLLQKFSEAAYE 358 (372)
T ss_pred cccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCCC--cHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 443 23458999999999999864331 134555666 678777764 79999999999999873 3566777766
Q ss_pred HHHHH
Q 012893 426 LKKLA 430 (454)
Q Consensus 426 l~~~~ 430 (454)
.++++
T Consensus 359 ~~~~~ 363 (372)
T cd04949 359 NAERY 363 (372)
T ss_pred HHHHh
Confidence 65444
No 106
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.19 E-value=0.00025 Score=72.22 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=87.8
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHH----h-cCCCEEEEEcCCcccccchhhhh-hhCCCceEeeccChHhhhcccCcc
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALE----A-IGFPFLWSFRGNAEEQLPKGFLE-RTKSYGKVVPWAPQLKILEHSSVC 346 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~----~-~~~~~i~~~~~~~~~~l~~~~~~-~~~~nv~v~~~vp~~~ll~~~~~~ 346 (454)
+.++++.|..... ..+..+++++. . .+.++++...+.....+.+-..+ ...++|...++.+...++..++
T Consensus 319 ~~~il~vGrl~~~--Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~ad-- 394 (500)
T TIGR02918 319 PFSIITASRLAKE--KHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYE-- 394 (500)
T ss_pred CeEEEEEeccccc--cCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCC--
Confidence 3556677887532 23333334332 2 34454444333221122111111 1235678889988889998888
Q ss_pred eEEec---CCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCC--CCC----HHHHHHHHHHHhcCchH
Q 012893 347 VFVTH---CGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGE--KFT----KDETVNALKQVLSSEEG 416 (454)
Q Consensus 347 ~~I~H---gG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~--~~~----~~~l~~av~~vl~~~~~ 416 (454)
++|.- -|+ .++.||+++|+|+|+....+ .+...++.- .-|..++.+ .-+ .+.++++|.++++++..
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~ 470 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDI 470 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHHHHHhChHHH
Confidence 77753 344 48999999999999865421 133445444 567666521 122 78899999999965444
Q ss_pred HHHHHHHHHHHHHHH
Q 012893 417 KRMRENVGALKKLAF 431 (454)
Q Consensus 417 ~~~~~~a~~l~~~~~ 431 (454)
..|.+++++.++.+.
T Consensus 471 ~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 471 DAFHEYSYQIAEGFL 485 (500)
T ss_pred HHHHHHHHHHHHhcC
Confidence 567777776555433
No 107
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.16 E-value=3.2e-06 Score=81.75 Aligned_cols=131 Identities=15% Similarity=0.213 Sum_probs=76.7
Q ss_pred CCCcEEEEeeCCCCCCC-H---HHHHHHHHHHHhc-CCCEEEEEcCCcc--cccchhhhhhhCCCceEeeccC---hHhh
Q 012893 270 ENASVIYISFGSMITPP-R---AEVIALAEALEAI-GFPFLWSFRGNAE--EQLPKGFLERTKSYGKVVPWAP---QLKI 339 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~l~~~~~~~~~~nv~v~~~vp---~~~l 339 (454)
.+++.++|++=...... + ..+..++.++... +.++||...+... ..+-+.+ +.. +|+.+++.++ +..+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l-~~~-~~v~~~~~l~~~~~l~l 255 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKL-KKY-DNVRLIEPLGYEEYLSL 255 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHH-TT--TTEEEE----HHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHh-ccc-CCEEEECCCCHHHHHHH
Confidence 56679999985555444 3 3455566666665 7788888885431 1121222 122 4888886555 5688
Q ss_pred hcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 340 LEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 340 l~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
|.+++ ++|+.+| |-.-||.++|+|.|.+=..++.+. -++ . |..+.+. .++++|.+++.+++++
T Consensus 256 l~~a~--~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe---~r~-~-~~nvlv~---~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 256 LKNAD--LVVGDSS-GIQEEAPSLGKPVVNIRDSGERQE---GRE-R-GSNVLVG---TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHES--EEEESSH-HHHHHGGGGT--EEECSSS-S-HH---HHH-T-TSEEEET---SSHHHHHHHHHHHHH-
T ss_pred Hhcce--EEEEcCc-cHHHHHHHhCCeEEEecCCCCCHH---HHh-h-cceEEeC---CCHHHHHHHHHHHHhC
Confidence 88988 9999999 555599999999999922222221 111 1 3343333 5899999999999976
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.14 E-value=0.0017 Score=66.14 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=75.1
Q ss_pred cEEEEeeCCCCCCC-HHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhh---hhhCCCceEeeccChH---hhhcccCc
Q 012893 273 SVIYISFGSMITPP-RAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFL---ERTKSYGKVVPWAPQL---KILEHSSV 345 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~---~~~~~nv~v~~~vp~~---~ll~~~~~ 345 (454)
..+++..|...... .+.+...+..+.+.+.+++++..+.. ...+.+. ++..+|+.+....++. .++..++
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD- 372 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP--EYEEALRELAARYPGRVAVLIGYDEALAHLIYAGAD- 372 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH--HHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCC-
Confidence 35566777776332 33444444444445566666654421 1112221 2224677765434432 4566666
Q ss_pred ceEEecC---Cc-hhHHHHHHcCCCeecccccc--chhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 346 CVFVTHC---GW-NSTIEGITGGVPMVCRPVFA--DQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 346 ~~~I~Hg---G~-gsv~eal~~GvP~i~~P~~~--DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++... |. .+.+||+++|+|.|+....+ |--.+.....+. |.|..++.. +++++.+++.++++
T Consensus 373 -v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 373 -FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGY--NADALLAALRRALA 441 (476)
T ss_pred -EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCC--CHHHHHHHHHHHHH
Confidence 777542 33 37789999999999765532 211111111134 578888764 78999999999886
No 109
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=0.00012 Score=69.67 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHH----HHHhc-CCCEEEEEcCCcccccchhhhhhhC--CCceEe---eccChHhhh
Q 012893 271 NASVIYISFGSMITPPRAEVIALAE----ALEAI-GFPFLWSFRGNAEEQLPKGFLERTK--SYGKVV---PWAPQLKIL 340 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~----~~~~~-~~~~i~~~~~~~~~~l~~~~~~~~~--~nv~v~---~~vp~~~ll 340 (454)
.+..|++++=--.+.. ..++.+.. ..+.. +..+|..+-.+. .+.+-..+... +|+.+. +|.+...++
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~--~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~ 279 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP--RVRELVLKRLKNVERVKLIDPLGYLDFHNLM 279 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh--hhhHHHHHHhCCCCcEEEeCCcchHHHHHHH
Confidence 3458888774443333 33444444 33433 455555544432 11111112222 467776 678889999
Q ss_pred cccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHH
Q 012893 341 EHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMR 420 (454)
Q Consensus 341 ~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~ 420 (454)
.+|- +++|-+| |-.-||-..|+|.+++=...++|. ..+. |.-+.+. .+.+.|.+++.++++++ ++.
T Consensus 280 ~~a~--~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v~a-gt~~lvg---~~~~~i~~~~~~ll~~~---~~~ 345 (383)
T COG0381 280 KNAF--LILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GVEA-GTNILVG---TDEENILDAATELLEDE---EFY 345 (383)
T ss_pred Hhce--EEEecCC-chhhhHHhcCCcEEeeccCCCCcc----ceec-CceEEeC---ccHHHHHHHHHHHhhCh---HHH
Confidence 9998 9999998 667899999999999988888887 2223 3333333 46799999999999986 555
Q ss_pred HHH
Q 012893 421 ENV 423 (454)
Q Consensus 421 ~~a 423 (454)
++.
T Consensus 346 ~~m 348 (383)
T COG0381 346 ERM 348 (383)
T ss_pred HHH
Confidence 433
No 110
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.09 E-value=0.0008 Score=67.26 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=55.4
Q ss_pred CCCceEeeccChH---hhhcccCcceEEecC---Cch-hHHHHHHcCCCeeccccccchhHHHHHHH---HhhceeecCc
Q 012893 325 KSYGKVVPWAPQL---KILEHSSVCVFVTHC---GWN-STIEGITGGVPMVCRPVFADQALNQRIIE---TAWGIGVGVX 394 (454)
Q Consensus 325 ~~nv~v~~~vp~~---~ll~~~~~~~~I~Hg---G~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~---~~~G~G~~~~ 394 (454)
.++|.+.+++|+. .+|..++ ++|+-. |+| ++.||+++|+|.|+.-..+. ....++ .- ..|...+
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~~ 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLAS 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEeC
Confidence 4688888999864 6787777 666432 333 78999999999997653321 112232 34 5666542
Q ss_pred CCCCCHHHHHHHHHHHhcCc
Q 012893 395 GEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 395 ~~~~~~~~l~~av~~vl~~~ 414 (454)
+++++++++.++++++
T Consensus 378 ----d~~~la~ai~~ll~~~ 393 (419)
T cd03806 378 ----TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----CHHHHHHHHHHHHhCC
Confidence 7899999999999875
No 111
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.05 E-value=0.0016 Score=65.12 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=52.0
Q ss_pred EeeccChHhhhcccCcceEEecC----CchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHH
Q 012893 330 VVPWAPQLKILEHSSVCVFVTHC----GWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVN 405 (454)
Q Consensus 330 v~~~vp~~~ll~~~~~~~~I~Hg----G~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~ 405 (454)
+.++.+...++..++ +||.-+ =-.++.||+++|+|+|+.-..+ + ..+..- +-|...+ +.+++.+
T Consensus 288 f~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~----~~~~~a~ 355 (462)
T PLN02846 288 YPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD----DGKGFVR 355 (462)
T ss_pred ECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC----CHHHHHH
Confidence 346667777887776 888774 3458899999999999876443 2 334334 5554442 6889999
Q ss_pred HHHHHhcCc
Q 012893 406 ALKQVLSSE 414 (454)
Q Consensus 406 av~~vl~~~ 414 (454)
++.++|+++
T Consensus 356 ai~~~l~~~ 364 (462)
T PLN02846 356 ATLKALAEE 364 (462)
T ss_pred HHHHHHccC
Confidence 999999854
No 112
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.89 E-value=5.3e-05 Score=73.79 Aligned_cols=125 Identities=12% Similarity=0.185 Sum_probs=86.5
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChH---hhhcccCcceEEe-
Q 012893 275 IYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQL---KILEHSSVCVFVT- 350 (454)
Q Consensus 275 v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~---~ll~~~~~~~~I~- 350 (454)
.++..|+... ......++++++..+.+++++..+... +.+.+...+||.+.+++|+. .++..++ ++|.
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~~----~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad--~~v~p 268 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPEL----DRLRAKAGPNVTFLGRVSDEELRDLYARAR--AFLFP 268 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChhH----HHHHhhcCCCEEEecCCCHHHHHHHHHhCC--EEEEC
Confidence 3455677653 234556777777777787776655432 22333456899999999974 5677777 5553
Q ss_pred -cCCch-hHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 351 -HCGWN-STIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 351 -HgG~g-sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
.-|.| ++.||+++|+|+|+....+ ....+++. +.|..++.+ +.+.++++|.++++|+
T Consensus 269 s~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~--~~~~la~~i~~l~~~~ 327 (351)
T cd03804 269 AEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ--TVESLAAAVERFEKNE 327 (351)
T ss_pred CcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC--CHHHHHHHHHHHHhCc
Confidence 34444 5789999999999876533 33445666 688888764 7899999999999986
No 113
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.85 E-value=0.00041 Score=69.12 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=65.7
Q ss_pred CCceEeeccChH---hhhcccCcceEEecCC----chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCC
Q 012893 326 SYGKVVPWAPQL---KILEHSSVCVFVTHCG----WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKF 398 (454)
Q Consensus 326 ~nv~v~~~vp~~---~ll~~~~~~~~I~HgG----~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~ 398 (454)
++|.+.+++++. .++..++++++|..+- -.+++||+++|+|+|+-... .....+.+. +.|..+... -
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~~~-~ 362 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLSKD-P 362 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeCCC-C
Confidence 567888999975 4555555568876653 45799999999999985543 345566655 588777642 3
Q ss_pred CHHHHHHHHHHHhcCchH-HHHHHHHHH
Q 012893 399 TKDETVNALKQVLSSEEG-KRMRENVGA 425 (454)
Q Consensus 399 ~~~~l~~av~~vl~~~~~-~~~~~~a~~ 425 (454)
+.++++++|.++++|++. ..+++++++
T Consensus 363 ~~~~la~~I~~ll~~~~~~~~m~~~ar~ 390 (407)
T cd04946 363 TPNELVSSLSKFIDNEEEYQTMREKARE 390 (407)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 789999999999998632 344444444
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.84 E-value=0.00021 Score=61.74 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCcEEEEeeCCCCCC-CHHHHHHHHHHHHh--cCCCEEEEEc-CCcccccchhhhh-hhCCCceEeeccC---hHhhhcc
Q 012893 271 NASVIYISFGSMITP-PRAEVIALAEALEA--IGFPFLWSFR-GNAEEQLPKGFLE-RTKSYGKVVPWAP---QLKILEH 342 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~-~~~~~~l~~~~~~-~~~~nv~v~~~vp---~~~ll~~ 342 (454)
+.+.+++..|+.... ....+..++.-+.. ...-.++.+| +.....+...... ...+++.+.++++ ...++..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 92 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS 92 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccccc
Confidence 445677778877643 23444444444432 2333344444 2211111111111 1346888899988 2577877
Q ss_pred cCcceEEec----CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchH-H
Q 012893 343 SSVCVFVTH----CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEG-K 417 (454)
Q Consensus 343 ~~~~~~I~H----gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~-~ 417 (454)
++ ++|+. |...++.||+++|+|+|+. |...+...+... +.|..++.. +.+++.++|.+++++++. .
T Consensus 93 ~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~~--~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 93 SD--IFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDPN--DIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp TS--EEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEESTT--SHHHHHHHHHHHHHHHHHHH
T ss_pred ce--eccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCCC--CHHHHHHHHHHHHCCHHHHH
Confidence 77 88877 6677999999999999974 466677777777 788888875 999999999999988632 3
Q ss_pred HHHHHHHH
Q 012893 418 RMRENVGA 425 (454)
Q Consensus 418 ~~~~~a~~ 425 (454)
.+.+++++
T Consensus 164 ~l~~~~~~ 171 (172)
T PF00534_consen 164 KLGKNARE 171 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 45555443
No 115
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.82 E-value=0.01 Score=54.73 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=64.8
Q ss_pred ccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC--ccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHHHh
Q 012893 21 GTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN--GSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFLKA 98 (454)
Q Consensus 21 ~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (454)
.-|+.-+-.+-+.| .++| |+|.+.+-.... +.+... |+.+..|.... + ....+.+...
T Consensus 10 ~~hvhfFk~lI~el--ekkG--~ev~iT~rd~~~v~~LLd~y-------gf~~~~Igk~g--~----~tl~~Kl~~~--- 69 (346)
T COG1817 10 PPHVHFFKNLIWEL--EKKG--HEVLITCRDFGVVTELLDLY-------GFPYKSIGKHG--G----VTLKEKLLES--- 69 (346)
T ss_pred cchhhHHHHHHHHH--HhCC--eEEEEEEeecCcHHHHHHHh-------CCCeEeecccC--C----ccHHHHHHHH---
Confidence 34677788899999 9999 999987764322 223333 88888884111 0 0112122211
Q ss_pred chHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 99 TPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
. .. ...+.+++.+. +||+.+. -.+.....+|.-+|+|++.+-.
T Consensus 70 ~-eR-~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D 112 (346)
T COG1817 70 A-ER-VYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVD 112 (346)
T ss_pred H-HH-HHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecC
Confidence 1 11 12345566665 9999999 4677788999999999999753
No 116
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.70 E-value=0.0011 Score=65.63 Aligned_cols=140 Identities=19% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcc--cccchhhhhh--hCCCceEeeccChHhhh-cccCc
Q 012893 271 NASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAE--EQLPKGFLER--TKSYGKVVPWAPQLKIL-EHSSV 345 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~~~--~~~nv~v~~~vp~~~ll-~~~~~ 345 (454)
+..++|.+|.+.....+..+..-.+.++..+...+|....... ..+...+.+. .++++.+.+..+....| .+..+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~ 362 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLA 362 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhC
Confidence 3469999999999999999999889998877767776654421 1122222211 23577777777754332 22233
Q ss_pred ceEE---ecCCchhHHHHHHcCCCeeccccc-cchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 346 CVFV---THCGWNSTIEGITGGVPMVCRPVF-ADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 346 ~~~I---~HgG~gsv~eal~~GvP~i~~P~~-~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
|+++ ..+|.+|++|||+.|||+|.+|-. .=...-|..+..+ |+.-.+-. +.++-.+.-.++-.|+
T Consensus 363 DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA~---s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 363 DICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIAD---SEEEYVEIAVRLATDP 431 (468)
T ss_dssp SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-S---SHHHHHHHHHHHHH-H
T ss_pred CEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcCC---CHHHHHHHHHHHhCCH
Confidence 4665 457899999999999999999943 3345566677777 88866554 4555555555566675
No 117
>PLN02316 synthase/transferase
Probab=97.61 E-value=0.17 Score=55.37 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=78.6
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhh---hhh----hCCCceEeeccChH---hhhcc
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGF---LER----TKSYGKVVPWAPQL---KILEH 342 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---~~~----~~~nv~v~~~vp~~---~ll~~ 342 (454)
.++...|..... ..+.+...+..+.+.+.+++++-.+.. ..+...+ .++ .+++|.+....+.. .++..
T Consensus 841 plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd-~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa 919 (1036)
T PLN02316 841 PLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPD-PRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG 919 (1036)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCC-HHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh
Confidence 344456666532 123333333333234677776543322 1111222 121 13567666555543 46766
Q ss_pred cCcceEEecC---Cc-hhHHHHHHcCCCeecccccc--chhHH-------HHHHHHhhceeecCcCCCCCHHHHHHHHHH
Q 012893 343 SSVCVFVTHC---GW-NSTIEGITGGVPMVCRPVFA--DQALN-------QRIIETAWGIGVGVXGEKFTKDETVNALKQ 409 (454)
Q Consensus 343 ~~~~~~I~Hg---G~-gsv~eal~~GvP~i~~P~~~--DQ~~n-------A~~v~~~~G~G~~~~~~~~~~~~l~~av~~ 409 (454)
++ +|+..+ |. .+.+||+++|+|.|+....+ |.-.. +...... +-|..++.. +++.|..+|.+
T Consensus 920 AD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~tGflf~~~--d~~aLa~AL~r 994 (1036)
T PLN02316 920 AD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PNGFSFDGA--DAAGVDYALNR 994 (1036)
T ss_pred Cc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-CceEEeCCC--CHHHHHHHHHH
Confidence 65 888643 33 48899999999988765432 22111 1100112 357666653 88999999999
Q ss_pred HhcCchHHHHHHHHHHHHHHHHHHHh
Q 012893 410 VLSSEEGKRMRENVGALKKLAFKAVE 435 (454)
Q Consensus 410 vl~~~~~~~~~~~a~~l~~~~~~~~~ 435 (454)
++++ |......+++..++.+.
T Consensus 995 aL~~-----~~~~~~~~~~~~r~~m~ 1015 (1036)
T PLN02316 995 AISA-----WYDGRDWFNSLCKRVME 1015 (1036)
T ss_pred HHhh-----hhhhHHHHHHHHHHHHH
Confidence 9974 33333334444444443
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.57 E-value=0.0047 Score=60.92 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=62.9
Q ss_pred hCCCceEeeccChH---hhhcccCcceEEecC----Cc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecC-c
Q 012893 324 TKSYGKVVPWAPQL---KILEHSSVCVFVTHC----GW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGV-X 394 (454)
Q Consensus 324 ~~~nv~v~~~vp~~---~ll~~~~~~~~I~Hg----G~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~-~ 394 (454)
...++.+.+++|+. .++..++ ++|... |. .++.||+++|+|+|+.... .+...++.- ..|..+ +
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 34678888999854 5587777 776533 33 4778999999999987653 244556565 677644 3
Q ss_pred CCCCCHHHHHHHHHHHhcCchHHHHHHHH
Q 012893 395 GEKFTKDETVNALKQVLSSEEGKRMRENV 423 (454)
Q Consensus 395 ~~~~~~~~l~~av~~vl~~~~~~~~~~~a 423 (454)
. .+.+.++++|.++++|++...+.+++
T Consensus 328 ~--~d~~~la~~I~~ll~d~~~~~~~~~a 354 (380)
T PRK15484 328 P--MTSDSIISDINRTLADPELTQIAEQA 354 (380)
T ss_pred C--CCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3 37999999999999987333333333
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.41 E-value=0.015 Score=51.96 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCCceEeeccC---hH-hhhcccCcceEEecCC----chhHHHHHHcCCCeeccccccc
Q 012893 325 KSYGKVVPWAP---QL-KILEHSSVCVFVTHCG----WNSTIEGITGGVPMVCRPVFAD 375 (454)
Q Consensus 325 ~~nv~v~~~vp---~~-~ll~~~~~~~~I~HgG----~gsv~eal~~GvP~i~~P~~~D 375 (454)
..|+.+.++++ .. .++..++ ++|+... .+++.||+++|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 46888888863 22 3333355 8888887 7899999999999998876543
No 120
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.40 E-value=0.014 Score=55.92 Aligned_cols=132 Identities=20% Similarity=0.142 Sum_probs=77.8
Q ss_pred CCcEEEEeeCCCCCC---CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccC---hHhhhcccC
Q 012893 271 NASVIYISFGSMITP---PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP---QLKILEHSS 344 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp---~~~ll~~~~ 344 (454)
+++.|.+..|+.... +.+.+.++++.+.+.++++++..|+......-+...+..+ +..+.+..+ -.+++++|+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALP-GAVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCCCHHHHHHHHHcCC
Confidence 445666666654432 5678888999887778887776565432222223322222 233444333 358888887
Q ss_pred cceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhcee---ec-CcCCCCCHHHHHHHHHHHh
Q 012893 345 VCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIG---VG-VXGEKFTKDETVNALKQVL 411 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G---~~-~~~~~~~~~~l~~av~~vl 411 (454)
++|+.- .|.++=|.+.|+|.|.+=-..+ ..+..= ||-. +. .....++++++.++++++|
T Consensus 257 --l~I~~D-Sgp~HlAaa~g~P~i~lfg~t~----p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 257 --AVVGVD-TGLTHLAAALDKPTVTLYGATD----PGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred --EEEeCC-ChHHHHHHHcCCCEEEEECCCC----Hhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 999875 4788889999999985511111 111000 1111 11 1255689999999998765
No 121
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.34 E-value=0.0077 Score=61.29 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=84.6
Q ss_pred cEEEEeeCCCCCCC-HHHHHHHHHHHHh--cCCCEEEEEcCCcccccchhh---hhh--hCCCceEeeccChHhhhcccC
Q 012893 273 SVIYISFGSMITPP-RAEVIALAEALEA--IGFPFLWSFRGNAEEQLPKGF---LER--TKSYGKVVPWAPQLKILEHSS 344 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~-~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~---~~~--~~~nv~v~~~vp~~~ll~~~~ 344 (454)
+.+++..|...... .+.+...+..+.+ .+.+++++.++......-+.+ .+. ..+||.+.+......++..++
T Consensus 293 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~aD 372 (475)
T cd03813 293 PPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKLD 372 (475)
T ss_pred CcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhCC
Confidence 45666778876332 2333333333333 244554443332111111111 111 246888888666778888777
Q ss_pred cceEEecC----CchhHHHHHHcCCCeeccccccchhHHHHHHHHh----h-ceeecCcCCCCCHHHHHHHHHHHhcCch
Q 012893 345 VCVFVTHC----GWNSTIEGITGGVPMVCRPVFADQALNQRIIETA----W-GIGVGVXGEKFTKDETVNALKQVLSSEE 415 (454)
Q Consensus 345 ~~~~I~Hg----G~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~----~-G~G~~~~~~~~~~~~l~~av~~vl~~~~ 415 (454)
++|... --.++.||+++|+|+|+- |.......++.. + ..|..++.. +.+++++++.++++|++
T Consensus 373 --v~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~~--d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 373 --VLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPPA--DPEALARAILRLLKDPE 444 (475)
T ss_pred --EEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECCC--CHHHHHHHHHHHhcCHH
Confidence 666443 345899999999999984 334445555552 0 267777654 79999999999999873
Q ss_pred H-HHHHHHHH
Q 012893 416 G-KRMRENVG 424 (454)
Q Consensus 416 ~-~~~~~~a~ 424 (454)
. +.+.++++
T Consensus 445 ~~~~~~~~a~ 454 (475)
T cd03813 445 LRRAMGEAGR 454 (475)
T ss_pred HHHHHHHHHH
Confidence 2 34444444
No 122
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.32 E-value=0.0031 Score=60.98 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=72.1
Q ss_pred CCCceEeeccChHhhh---cccCcceEEecC-------Cc------hhHHHHHHcCCCeeccccccchhHHHHHHHHhhc
Q 012893 325 KSYGKVVPWAPQLKIL---EHSSVCVFVTHC-------GW------NSTIEGITGGVPMVCRPVFADQALNQRIIETAWG 388 (454)
Q Consensus 325 ~~nv~v~~~vp~~~ll---~~~~~~~~I~Hg-------G~------gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G 388 (454)
.+||...+|+|+..+. .. +.+++...- .+ +-+.+.+++|+|+|+. ++...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-C
Confidence 3789999999987653 33 333333221 11 1267789999999985 456788999999 9
Q ss_pred eeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 012893 389 IGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFK 432 (454)
Q Consensus 389 ~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~ 432 (454)
+|..++ +.+++.+++.++. +++.+.|++|++++++++++
T Consensus 280 ~G~~v~----~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 280 LGFVVD----SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred ceEEeC----CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc
Confidence 999987 5678999998854 33446899999999999998
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.24 E-value=0.0013 Score=54.25 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=65.8
Q ss_pred EEEEeeCCCCCC-CHHHHHH-HHHHHHhc--CCCEEEEEcCCcccccchhhhhhhCCCceEeeccCh-HhhhcccCcceE
Q 012893 274 VIYISFGSMITP-PRAEVIA-LAEALEAI--GFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQ-LKILEHSSVCVF 348 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~-~~ll~~~~~~~~ 348 (454)
+.++++|+.... ..+.+.. ++..+.+. +..+++. |+.. +.+.+...+||.+.++++. ..++..+++.+.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~-G~~~-----~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIII-GNGP-----DELKRLRRPNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEE-CESS------HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEE-eCCH-----HHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEE
Confidence 445556666432 2333333 55555543 3444443 3321 1222212369999999874 477888875444
Q ss_pred Eec--CC-chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 349 VTH--CG-WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 349 I~H--gG-~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
.+. .| -+++.|++++|+|+|+.+.. ....++.. +.|..+ . -+++++.+++.++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~--~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-A--NDPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T--T-HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-C--CCHHHHHHHHHHHhcC
Confidence 432 23 48999999999999997661 23344446 888877 3 2899999999999875
No 124
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.05 E-value=0.082 Score=50.28 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=72.3
Q ss_pred CcEEEEeeCCCCC---CCHHHHH----HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhC--CCceEe---eccChHhh
Q 012893 272 ASVIYISFGSMIT---PPRAEVI----ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTK--SYGKVV---PWAPQLKI 339 (454)
Q Consensus 272 ~~~v~vs~Gs~~~---~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~--~nv~v~---~~vp~~~l 339 (454)
++.+-|-.|.-.. .+.+... .+....+..+..+.++++.......-+.+.+... ..+.+. +.=|+..+
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~ 225 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGF 225 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHH
Confidence 4555555554332 2444333 3444444456567777666554333333333332 344343 33468899
Q ss_pred hcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHH---HHHhhceeecCc
Q 012893 340 LEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRI---IETAWGIGVGVX 394 (454)
Q Consensus 340 l~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~---v~~~~G~G~~~~ 394 (454)
|..++ .++||---.+.+.||+..|+|+.++|...-.....+. +++. |+-..+.
T Consensus 226 La~ad-~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~-g~~r~~~ 281 (311)
T PF06258_consen 226 LAAAD-AIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEER-GAVRPFT 281 (311)
T ss_pred HHhCC-EEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHC-CCEEECC
Confidence 99998 5888888899999999999999999987622233333 3444 5555554
No 125
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.02 E-value=0.49 Score=48.33 Aligned_cols=74 Identities=19% Similarity=0.094 Sum_probs=51.6
Q ss_pred CCCceEeeccCh-HhhhcccCcceEEec---CC-chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCC
Q 012893 325 KSYGKVVPWAPQ-LKILEHSSVCVFVTH---CG-WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFT 399 (454)
Q Consensus 325 ~~nv~v~~~vp~-~~ll~~~~~~~~I~H---gG-~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 399 (454)
.++|.+.++... ..++..++ ++|.. -| -+++.||+++|+|+|+... ..+...+.+- ..|..++.. +
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~~--D 524 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDDA--Q 524 (578)
T ss_pred CCcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECCC--C
Confidence 378888888654 46677776 88763 44 4599999999999997654 3456666666 788887764 3
Q ss_pred HHHHHHHH
Q 012893 400 KDETVNAL 407 (454)
Q Consensus 400 ~~~l~~av 407 (454)
.+.+.+++
T Consensus 525 ~~aLa~ai 532 (578)
T PRK15490 525 TVNLDQAC 532 (578)
T ss_pred hhhHHHHH
Confidence 44454444
No 126
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.02 E-value=0.12 Score=53.76 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=51.7
Q ss_pred CceEeeccChH-hhhcccCcceEEecC---C-chhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHH
Q 012893 327 YGKVVPWAPQL-KILEHSSVCVFVTHC---G-WNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKD 401 (454)
Q Consensus 327 nv~v~~~vp~~-~ll~~~~~~~~I~Hg---G-~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~ 401 (454)
++.+.++.++. .++..++ +||.-+ | -.++.||+++|+|+|+....+... +..- +-|. +. -+.+
T Consensus 602 ~V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l~---~D~E 669 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-TY---KTSE 669 (794)
T ss_pred EEEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-ec---CCHH
Confidence 35556777755 5887777 887643 3 358899999999999887655321 2222 2232 22 2689
Q ss_pred HHHHHHHHHhcCc
Q 012893 402 ETVNALKQVLSSE 414 (454)
Q Consensus 402 ~l~~av~~vl~~~ 414 (454)
++.++|.++++|+
T Consensus 670 afAeAI~~LLsd~ 682 (794)
T PLN02501 670 DFVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999986
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.94 E-value=0.24 Score=49.37 Aligned_cols=160 Identities=10% Similarity=0.109 Sum_probs=94.2
Q ss_pred chhccCCCCcEEEEeeCCCCCC------C----HHHHHHHHHHHHhcCCCEEEEEcCC-------cccccchhhhhhhC-
Q 012893 264 PWLNEHENASVIYISFGSMITP------P----RAEVIALAEALEAIGFPFLWSFRGN-------AEEQLPKGFLERTK- 325 (454)
Q Consensus 264 ~~l~~~~~~~~v~vs~Gs~~~~------~----~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~l~~~~~~~~~- 325 (454)
.|+...+.+++|-++....... . ...+..+++.+.+.|+++++..--. .+......+.+..+
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 4555444556888876544311 1 1233345566656788877665321 11111122223332
Q ss_pred -CCceEe--eccCh--HhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeec-CcCCCCC
Q 012893 326 -SYGKVV--PWAPQ--LKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVG-VXGEKFT 399 (454)
Q Consensus 326 -~nv~v~--~~vp~--~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~-~~~~~~~ 399 (454)
+++.+. ++-+. ..++.+++ ++|..==++ ..-|+..|||.+.+++ | +-....++.. |.... ++.++++
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~d--l~ig~RlHa-~I~a~~~gvP~i~i~Y--~-~K~~~~~~~l-g~~~~~~~~~~l~ 378 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACE--LTVGTRLHS-AIISMNFGTPAIAINY--E-HKSAGIMQQL-GLPEMAIDIRHLL 378 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCC--EEEEecchH-HHHHHHcCCCEEEeee--h-HHHHHHHHHc-CCccEEechhhCC
Confidence 233433 23343 37887776 888644443 4557899999999986 4 4445555777 88866 6777789
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 012893 400 KDETVNALKQVLSSEEGKRMRENVGALKKLAFK 432 (454)
Q Consensus 400 ~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~ 432 (454)
.++|.+.+.++++|. +.+++..++.-+++++
T Consensus 379 ~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 379 DGSLQAMVADTLGQL--PALNARLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH
Confidence 999999999999985 2455544444444443
No 128
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.91 E-value=0.52 Score=46.85 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCC-EEEEEcCCcccccchhhhhhhCCCceEeeccC-h---HhhhcccCcceEEecC----CchhHHHH
Q 012893 290 VIALAEALEAIGFP-FLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP-Q---LKILEHSSVCVFVTHC----GWNSTIEG 360 (454)
Q Consensus 290 ~~~~~~~~~~~~~~-~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp-~---~~ll~~~~~~~~I~Hg----G~gsv~ea 360 (454)
+..+++++...+.. -++.+|.... .. ..++...++.. + ..++..++ +||.-+ --.++.||
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g~~-~~--------~~~v~~~g~~~~~~~l~~~y~~aD--vfV~pS~~Egfp~vilEA 326 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKFSP-FT--------AGNVVNHGFETDKRKLMSALNQMD--ALVFSSRVDNYPLILCEA 326 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCCc-cc--------ccceEEecCcCCHHHHHHHHHhCC--EEEECCccccCcCHHHHH
Confidence 45677777765433 2334443221 11 14555556653 2 34565566 777643 23578999
Q ss_pred HHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHH
Q 012893 361 ITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNAL 407 (454)
Q Consensus 361 l~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av 407 (454)
+++|+|+|.....+ ... +... +-|..++.+ +.+.|++++
T Consensus 327 mA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~~--d~~~La~~~ 365 (405)
T PRK10125 327 LSIGVPVIATHSDA----ARE-VLQK-SGGKTVSEE--EVLQLAQLS 365 (405)
T ss_pred HHcCCCEEEeCCCC----hHH-hEeC-CcEEEECCC--CHHHHHhcc
Confidence 99999999987764 122 2234 568777765 677787653
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.46 E-value=0.0031 Score=48.50 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=50.1
Q ss_pred CccchhccCCCCcEEEEeeCCCCCC---C--HHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCce
Q 012893 261 GCLPWLNEHENASVIYISFGSMITP---P--RAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGK 329 (454)
Q Consensus 261 ~~~~~l~~~~~~~~v~vs~Gs~~~~---~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~ 329 (454)
.+-.|+...++||.|+||+||.... . ...+..++++++..|..+|++++......+. .+++||+
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg-----~lP~nVR 97 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELG-----ELPDNVR 97 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCC-----S-TTTEE
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhC-----CCCCCCC
Confidence 3557999989999999999999754 2 2477899999999999999999987654443 3557764
No 130
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.44 E-value=0.67 Score=41.99 Aligned_cols=103 Identities=21% Similarity=0.254 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCC-CceEe-----eccChHhhhcccCcceEEecCCchhHHHHHHcC
Q 012893 291 IALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKS-YGKVV-----PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGG 364 (454)
Q Consensus 291 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~-nv~v~-----~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~G 364 (454)
..+...+++.|..++++++-........-+.+++.. -+.+. ++=|+-++|..++ ..++|.-..+...||++.|
T Consensus 187 ~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ad-yii~TaDSinM~sEAasTg 265 (329)
T COG3660 187 SLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAAD-YIISTADSINMCSEAASTG 265 (329)
T ss_pred HHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcc-eEEEecchhhhhHHHhccC
Confidence 346677788999999998876543333333232322 22222 4568999998888 4666777789999999999
Q ss_pred CCeecc--ccc-cch-hHHHHHHHHhhceeecCcC
Q 012893 365 VPMVCR--PVF-ADQ-ALNQRIIETAWGIGVGVXG 395 (454)
Q Consensus 365 vP~i~~--P~~-~DQ-~~nA~~v~~~~G~G~~~~~ 395 (454)
+|+.++ |.. .+. ...-+.+++. |+++-...
T Consensus 266 kPv~~~~~~~~~s~K~r~Fi~~L~eq-~~AR~f~~ 299 (329)
T COG3660 266 KPVFILEPPNFNSLKFRIFIEQLVEQ-KIARPFEG 299 (329)
T ss_pred CCeEEEecCCcchHHHHHHHHHHHHh-hhccccCc
Confidence 999643 322 221 1233344445 66655543
No 131
>PRK14098 glycogen synthase; Provisional
Probab=96.34 E-value=0.083 Score=53.89 Aligned_cols=132 Identities=12% Similarity=0.021 Sum_probs=76.7
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcc--cccchhhhhhhCCCceEeeccChH---hhhcccCcce
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAE--EQLPKGFLERTKSYGKVVPWAPQL---KILEHSSVCV 347 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~~~~~~nv~v~~~vp~~---~ll~~~~~~~ 347 (454)
.+++..|..... ..+.+...+..+.+.+.+++++-.+... ..+ ..+.++.+++|.+.+.++.. .+++.++ +
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~a~aD--i 384 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRF-QDFAEEHPEQVSVQTEFTDAFFHLAIAGLD--M 384 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHH-HHHHHHCCCCEEEEEecCHHHHHHHHHhCC--E
Confidence 455666776533 2344444444444456777666544321 111 12223345788888888864 5776666 8
Q ss_pred EEecC---Cc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHh
Q 012893 348 FVTHC---GW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVL 411 (454)
Q Consensus 348 ~I~Hg---G~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl 411 (454)
++..+ |. .+.+||+++|+|.|+....+-........+.. +-|..++.. +++.+.++|.+++
T Consensus 385 ~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~~--d~~~la~ai~~~l 449 (489)
T PRK14098 385 LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHDY--TPEALVAKLGEAL 449 (489)
T ss_pred EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCCC--CHHHHHHHHHHHH
Confidence 87654 33 36789999999888766533111100111224 677777654 7899999999876
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.058 Score=54.01 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhh------hCCCceEeeccC---hHhhh
Q 012893 270 ENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLER------TKSYGKVVPWAP---QLKIL 340 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~------~~~nv~v~~~vp---~~~ll 340 (454)
++..+||++|+......++.+..-...++..+-.++|..++.........+... ..++.++.+-.| |.+-+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 455799999999999999998888888888777777777764322222222111 124666666666 45555
Q ss_pred cccCcceEEe---cCCchhHHHHHHcCCCeeccccccchhH
Q 012893 341 EHSSVCVFVT---HCGWNSTIEGITGGVPMVCRPVFADQAL 378 (454)
Q Consensus 341 ~~~~~~~~I~---HgG~gsv~eal~~GvP~i~~P~~~DQ~~ 378 (454)
.-+| +|.- =||+.|..|+|..|||+|..+ ++|+-
T Consensus 507 ~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 507 GIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred chhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 5666 8875 599999999999999999886 77764
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.03 E-value=0.16 Score=51.26 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=92.3
Q ss_pred cCCeEEeccCCCCCCCCC---CCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccc
Q 012893 239 FRKFLNVGPSTLTSPPPV---SDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQ 315 (454)
Q Consensus 239 ~~~~~~vGp~~~~~~~~~---~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 315 (454)
.|+.+++|-.-.+..+.. ..+ ...++- -++..+||++|-.....++..++.-.+.+.+.+..++|........+
T Consensus 725 lPh~ffi~d~~qk~~~~~dpn~kP-~r~~y~--Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge 801 (966)
T KOG4626|consen 725 LPHCFFIGDHKQKNQDVLDPNNKP-TRSQYG--LPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE 801 (966)
T ss_pred CCceEEecCcccccccccCCCCCC-CCCCCC--CCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch
Confidence 488999996554332211 111 111111 13446999999998888999999999999998989999988653211
Q ss_pred cchhhhhh------hCCCceEeeccChH-----hhhcccCcceEEecCCchhHHHHHHcCCCeeccccccc-hhHHHHHH
Q 012893 316 LPKGFLER------TKSYGKVVPWAPQL-----KILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFAD-QALNQRII 383 (454)
Q Consensus 316 l~~~~~~~------~~~nv~v~~~vp~~-----~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~D-Q~~nA~~v 383 (454)
..|... .+++|.+.+-+... ..|..-..|-..|. |+.|.++.|+.|||||.+|.-.- ...-+-.+
T Consensus 802 --~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll 878 (966)
T KOG4626|consen 802 --QRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL 878 (966)
T ss_pred --HHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH
Confidence 122111 23555555444421 22322222344554 67899999999999999996443 33444555
Q ss_pred HHhhceeecCcC
Q 012893 384 ETAWGIGVGVXG 395 (454)
Q Consensus 384 ~~~~G~G~~~~~ 395 (454)
... |+|-.+-.
T Consensus 879 ~~~-Gl~hliak 889 (966)
T KOG4626|consen 879 TAL-GLGHLIAK 889 (966)
T ss_pred HHc-ccHHHHhh
Confidence 666 99976643
No 134
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.94 E-value=0.066 Score=44.16 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=64.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcch
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREP 91 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (454)
|||+++.....| ...+++.| +++| |+|++++.....+..... .++.+..++-.. ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L--~~~g--~~V~ii~~~~~~~~~~~~------~~i~~~~~~~~~----------k~~ 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKEL--KKRG--YDVHIITPRNDYEKYEII------EGIKVIRLPSPR----------KSP 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHH--HHCC--CEEEEEEcCCCchhhhHh------CCeEEEEecCCC----------Ccc
Confidence 577777766666 45779999 8899 999999995554333323 388888884221 111
Q ss_pred HHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCch---hhHHHHHHHcC-CCeEEEeC
Q 012893 92 VEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFL---WFAAEMAEEMR-VPWIAYWT 146 (454)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~---~~~~~~A~~lg-iP~v~~~~ 146 (454)
+..+ . .. .+..+++.. +||+|.+.... ..+.+++...| +|.|....
T Consensus 58 ~~~~-~-----~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 58 LNYI-K-----YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH-H-----HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 2211 1 11 234444543 89999877543 34556778899 99986543
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.90 E-value=0.83 Score=43.80 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=74.2
Q ss_pred cEEEEeeCCCCC---CCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccC---hHhhhcccCcc
Q 012893 273 SVIYISFGSMIT---PPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP---QLKILEHSSVC 346 (454)
Q Consensus 273 ~~v~vs~Gs~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp---~~~ll~~~~~~ 346 (454)
+.|.+..|+... .+.+.+.++++.+.+.+.++++..|+......-+...+.. .++.+.+..+ -..++.+++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~-~~~~l~g~~sL~elaali~~a~-- 255 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGF-PYVEVLPKLSLEQVARVLAGAK-- 255 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccC-CcceecCCCCHHHHHHHHHhCC--
Confidence 444434444322 3678888999988777887766545533222222222211 2344444333 358888887
Q ss_pred eEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHH-h--hceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIET-A--WGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~-~--~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
++|+.-. |.++=|.+.|+|.|.+=-..|...++-.-.. . -.++.+ ...++++++-+++.++|+
T Consensus 256 l~I~nDS-Gp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~~~c--m~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 256 AVVSVDT-GLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSPGKS--MADLSAETVFQKLETLIS 321 (322)
T ss_pred EEEecCC-cHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCCCcc--cccCCHHHHHHHHHHHhh
Confidence 9998764 8899999999999955222221111100000 0 000111 234788888888887764
No 136
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.85 E-value=0.17 Score=43.51 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=63.1
Q ss_pred EEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccc--cccccccCCCCeeEEeCCCCCCCCCCCCCCCcchH
Q 012893 15 VLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSL--FMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPV 92 (454)
Q Consensus 15 ~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (454)
++..++.||+.-++.|.+.+...... ++..+++..+....- ++...... ..-.+..+|....- .....
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~--~~~~ivt~~d~~S~~k~~~~~~~~~-~~~~~~~~~r~r~v-------~q~~~ 71 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQ--PRTYIVTEGDKQSRSKAEQLEKSSS-KRHKILEIPRAREV-------GQSYL 71 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCC--CcEEEEEcCCcccHHHHHHHHHhcc-ccceeeccceEEEe-------chhhH
Confidence 45668999999999999999323344 777777775544332 11100010 01134444311100 01111
Q ss_pred HHHHHhchHHHHHHHHHHHHhcCCCccEEEEcC--chhhHHHHHHHc------CCCeEEEeC
Q 012893 93 EHFLKATPGNFVRALEKAVAKTGLEISCLITDA--FLWFAAEMAEEM------RVPWIAYWT 146 (454)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~--~~~~~~~~A~~l------giP~v~~~~ 146 (454)
....... ..+...+.-+. ..+||+||++. .+.+.+.+|..+ |.+.|.+-+
T Consensus 72 ~~~~~~l-~~~~~~~~il~---r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 72 TSIFTTL-RAFLQSLRILR---RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhHHHHH-HHHHHHHHHHH---HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1111111 22222222222 23899999995 455777889999 999999854
No 137
>PHA01633 putative glycosyl transferase group 1
Probab=95.80 E-value=0.085 Score=50.66 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=60.7
Q ss_pred hCCCceEe---eccCh---HhhhcccCcceEEecC---Cch-hHHHHHHcCCCeecccc------ccch------hHHHH
Q 012893 324 TKSYGKVV---PWAPQ---LKILEHSSVCVFVTHC---GWN-STIEGITGGVPMVCRPV------FADQ------ALNQR 381 (454)
Q Consensus 324 ~~~nv~v~---~~vp~---~~ll~~~~~~~~I~Hg---G~g-sv~eal~~GvP~i~~P~------~~DQ------~~nA~ 381 (454)
.+++|.+. +++++ ..++..++ +++.-+ |+| ++.||+++|+|+|+--. .+|+ ..+..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 34688877 45554 36676776 888643 444 68899999999997532 2332 12222
Q ss_pred HHH--HhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 012893 382 IIE--TAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKL 429 (454)
Q Consensus 382 ~v~--~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~ 429 (454)
... .. |.|..++. .+++++++++.++++.++.+....++++.+++
T Consensus 277 ~~~~~~~-g~g~~~~~--~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~ 323 (335)
T PHA01633 277 EYYDKEH-GQKWKIHK--FQIEDMANAIILAFELQDREERSMKLKELAKK 323 (335)
T ss_pred HhcCccc-CceeeecC--CCHHHHHHHHHHHHhccChhhhhHHHHHHHHh
Confidence 222 34 66666554 59999999999996543222333344444443
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.77 E-value=0.075 Score=40.41 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred cCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012893 351 HCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLA 430 (454)
Q Consensus 351 HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~ 430 (454)
+|-..-+.|++++|+|+|.-.. ......+..- --++..+ +.+++.++|..+++|+ +..++-+++-.+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~-~~~~~~~----~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDG-EHIITYN----DPEELAEKIEYLLENP--EERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCC-CeEEEEC----CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 5556789999999999998764 2222222222 2344444 8999999999999997 23333333333443
Q ss_pred HHHHhhCCChHHHHHHHH
Q 012893 431 FKAVESDGSSTKNFKALV 448 (454)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~ 448 (454)
++ ..+...-++.|+
T Consensus 78 ~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 78 LK----RHTWEHRAEQIL 91 (92)
T ss_pred HH----hCCHHHHHHHHH
Confidence 33 455555555554
No 139
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.67 E-value=1.8 Score=40.44 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=37.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhc--CCCcEEEEEEeCCCcCcccccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAA--LEEEVTFSFFSTAQSNGSLFME 60 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~--~G~~h~V~~~~~~~~~~~~~~~ 60 (454)
|||++-..+.|++.-+.++.++| ++ .+ -+|++++.+...+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~L--k~~~P~--~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRAL--KARYPD--ARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHH--HHHCCC--CEEEEEEChhhHHHHhcC
Confidence 68999999999999999999999 65 45 799999998776665543
No 140
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.53 E-value=1.4 Score=42.87 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCcEEEEeeCCCC----CCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCC----Cc-eEeeccC---hHh
Q 012893 271 NASVIYISFGSMI----TPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKS----YG-KVVPWAP---QLK 338 (454)
Q Consensus 271 ~~~~v~vs~Gs~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~----nv-~v~~~vp---~~~ 338 (454)
+++.|.+.-|+.. ..+.+.+.++++.+...+.++++..++ .....-+...+..+. ++ -+.+..+ -.+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~-~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~a 257 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSA-KDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVI 257 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCH-HhHHHHHHHHHhcccccccceeeccCCCCHHHHHH
Confidence 4567888887752 226788889998887677776665443 322222222222211 12 2334433 347
Q ss_pred hhcccCcceEEecCCchhHHHHHHcCCCeecc
Q 012893 339 ILEHSSVCVFVTHCGWNSTIEGITGGVPMVCR 370 (454)
Q Consensus 339 ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~ 370 (454)
++.+++ ++|+.- .|-++=|.+.|+|+|.+
T Consensus 258 li~~a~--l~I~nD-TGp~HlAaA~g~P~val 286 (348)
T PRK10916 258 LIAACK--AIVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHhCC--EEEecC-ChHHHHHHHhCCCEEEE
Confidence 888887 999865 48899999999999854
No 141
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.32 E-value=0.89 Score=43.91 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=62.1
Q ss_pred CcEEEEeeC-CCCC---CCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccC---hHhhhcccC
Q 012893 272 ASVIYISFG-SMIT---PPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP---QLKILEHSS 344 (454)
Q Consensus 272 ~~~v~vs~G-s~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp---~~~ll~~~~ 344 (454)
++.|.+.-| |.+. .+.+.+.++++.+.+.++++++..++ .....-+...+..+..+.+.+..+ -..++.+|+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~-~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~ 253 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGP-DEEERAEEIAKGLPNAVILAGKTSLEELAALIAGAD 253 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecCh-HHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCC
Confidence 578888888 4322 36789999999999999665555554 333333333333333332554444 346777777
Q ss_pred cceEEecCCchhHHHHHHcCCCeecc
Q 012893 345 VCVFVTHCGWNSTIEGITGGVPMVCR 370 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~GvP~i~~ 370 (454)
+||+.- .|-++=|.+.|+|.|.+
T Consensus 254 --l~I~~D-Sg~~HlAaA~~~P~I~i 276 (334)
T COG0859 254 --LVIGND-SGPMHLAAALGTPTIAL 276 (334)
T ss_pred --EEEccC-ChHHHHHHHcCCCEEEE
Confidence 888765 58889999999999944
No 142
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.23 E-value=2.7 Score=40.72 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=60.8
Q ss_pred CCcEEEEeeCCCCC---CCHHHHHHHHHHHHhcCCCEEEEEcCCc-ccccchhhhhhhC-CCce-EeeccC---hHhhhc
Q 012893 271 NASVIYISFGSMIT---PPRAEVIALAEALEAIGFPFLWSFRGNA-EEQLPKGFLERTK-SYGK-VVPWAP---QLKILE 341 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~~~~~-~nv~-v~~~vp---~~~ll~ 341 (454)
+++.|.+..|+... .+.+.+.++++.+...+.++++..++.. ....-+...+..+ .++. +.+..+ -.+++.
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 34567677776543 2567888888888777888776654431 1111122222211 1222 334333 358888
Q ss_pred ccCcceEEecCCchhHHHHHHcCCCeecc
Q 012893 342 HSSVCVFVTHCGWNSTIEGITGGVPMVCR 370 (454)
Q Consensus 342 ~~~~~~~I~HgG~gsv~eal~~GvP~i~~ 370 (454)
+++ ++|+. -.|.++=|.+.|+|.|.+
T Consensus 260 ~a~--l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 260 HAR--LFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred hCC--EEEec-CCHHHHHHHHcCCCEEEE
Confidence 887 99998 679999999999999955
No 143
>PHA01630 putative group 1 glycosyl transferase
Probab=95.11 E-value=0.61 Score=44.94 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=59.6
Q ss_pred eccChH---hhhcccCcceEEe---cCC-chhHHHHHHcCCCeecccccc--ch---hHHHHHHHH-----------hhc
Q 012893 332 PWAPQL---KILEHSSVCVFVT---HCG-WNSTIEGITGGVPMVCRPVFA--DQ---ALNQRIIET-----------AWG 388 (454)
Q Consensus 332 ~~vp~~---~ll~~~~~~~~I~---HgG-~gsv~eal~~GvP~i~~P~~~--DQ---~~nA~~v~~-----------~~G 388 (454)
.++|+. .+++.++ +++. ..| -.++.||+++|+|+|+.-..+ |. ..|+..++. . +
T Consensus 196 ~~v~~~~l~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 346643 4677777 6663 233 448999999999999876433 21 112211111 2 3
Q ss_pred eeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 389 IGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 389 ~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+|..++. +.+++.+++.+++.|++.+.++++.+.-+....+ ..|-....+++.+.+
T Consensus 273 ~G~~v~~---~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~ 328 (331)
T PHA01630 273 VGYFLDP---DIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKIL 328 (331)
T ss_pred cccccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 5655553 5778888888888863112344433333333333 244444444555443
No 144
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.77 E-value=4.3 Score=39.42 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=60.4
Q ss_pred CcEEEEeeCCCCC---CCHHHHHHHHHHHHhcCCCEEEEEcCCcc-cccchhhhhhhC-CCc-eEeeccC---hHhhhcc
Q 012893 272 ASVIYISFGSMIT---PPRAEVIALAEALEAIGFPFLWSFRGNAE-EQLPKGFLERTK-SYG-KVVPWAP---QLKILEH 342 (454)
Q Consensus 272 ~~~v~vs~Gs~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~~~~~-~nv-~v~~~vp---~~~ll~~ 342 (454)
++.|.+..|+... .+.+.+.++++.+.+.+.++++..++... ...-+...+... .++ -+.+..+ -.+++.+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 3567777777643 26778888998888778887776554321 111122222111 122 2344433 3588888
Q ss_pred cCcceEEecCCchhHHHHHHcCCCeecc
Q 012893 343 SSVCVFVTHCGWNSTIEGITGGVPMVCR 370 (454)
Q Consensus 343 ~~~~~~I~HgG~gsv~eal~~GvP~i~~ 370 (454)
++ ++|++-. |-++=|.+.|+|.|.+
T Consensus 263 a~--l~v~nDS-Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 263 AQ--LFIGVDS-APAHIAAAVNTPLICL 287 (352)
T ss_pred CC--EEEecCC-HHHHHHHHcCCCEEEE
Confidence 87 9998764 8889999999999854
No 145
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.63 E-value=2.3 Score=40.95 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=61.1
Q ss_pred CCcEEEEeeCCCC-C---CCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCce-EeeccC---hHhhhcc
Q 012893 271 NASVIYISFGSMI-T---PPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGK-VVPWAP---QLKILEH 342 (454)
Q Consensus 271 ~~~~v~vs~Gs~~-~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~-v~~~vp---~~~ll~~ 342 (454)
+++.|.+.-|+.. . .+.+.+.++++.+.+.+.++++..++. ....-+.+.+..+.++. +.+..+ -.+++++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~-e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~ 251 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAK-DHPAGNEIEALLPGELRNLAGETSLDEAVDLIAL 251 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChh-hHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHh
Confidence 4568888877742 2 257788888888877777766654433 22222233332323322 233322 3588888
Q ss_pred cCcceEEecCCchhHHHHHHcCCCeecc
Q 012893 343 SSVCVFVTHCGWNSTIEGITGGVPMVCR 370 (454)
Q Consensus 343 ~~~~~~I~HgG~gsv~eal~~GvP~i~~ 370 (454)
++ ++|+.-. |-++=|.+.|+|.|.+
T Consensus 252 a~--l~I~~DS-Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 252 AK--AVVTNDS-GLMHVAAALNRPLVAL 276 (334)
T ss_pred CC--EEEeeCC-HHHHHHHHcCCCEEEE
Confidence 87 9998764 7889999999999854
No 146
>PRK14099 glycogen synthase; Provisional
Probab=92.91 E-value=1.2 Score=45.38 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=68.1
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhh---hhhhCCCc-eEeeccChHh-hhcccCcce
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGF---LERTKSYG-KVVPWAPQLK-ILEHSSVCV 347 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---~~~~~~nv-~v~~~vp~~~-ll~~~~~~~ 347 (454)
+++...|..... ..+.+...+..+.+.+.+++++..+.. .+.+.+ .+..++++ .+.++-.... ++. +.+++
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~--~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~-a~aDi 372 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDA--ELEARFRAAAQAYPGQIGVVIGYDEALAHLIQ-AGADA 372 (485)
T ss_pred cEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCH--HHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHH-hcCCE
Confidence 344455665432 223333333333344667766655432 111222 22223455 3456633322 232 22348
Q ss_pred EEe---cCCch-hHHHHHHcCCCeecccccc--chhHHHH-H--HHHhhceeecCcCCCCCHHHHHHHHHH---HhcCc
Q 012893 348 FVT---HCGWN-STIEGITGGVPMVCRPVFA--DQALNQR-I--IETAWGIGVGVXGEKFTKDETVNALKQ---VLSSE 414 (454)
Q Consensus 348 ~I~---HgG~g-sv~eal~~GvP~i~~P~~~--DQ~~nA~-~--v~~~~G~G~~~~~~~~~~~~l~~av~~---vl~~~ 414 (454)
++. +=|.| +.+||+++|+|.|+....+ |--.... . .+.. +.|..++.. +++.+.+++.+ +++|+
T Consensus 373 fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~~--d~~~La~ai~~a~~l~~d~ 448 (485)
T PRK14099 373 LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSPV--TADALAAALRKTAALFADP 448 (485)
T ss_pred EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCCC--CHHHHHHHHHHHHHHhcCH
Confidence 886 34444 6689999998777654322 2111110 0 0112 357777664 78999999987 56665
No 147
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.47 E-value=1.5 Score=44.26 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=65.6
Q ss_pred eccChH---hhhcccCcceEEec---CCch-hHHHHHHcCCC----eeccccccchhHHHHHHHHhhceeecCcCCCCCH
Q 012893 332 PWAPQL---KILEHSSVCVFVTH---CGWN-STIEGITGGVP----MVCRPVFADQALNQRIIETAWGIGVGVXGEKFTK 400 (454)
Q Consensus 332 ~~vp~~---~ll~~~~~~~~I~H---gG~g-sv~eal~~GvP----~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~ 400 (454)
+.+++. +++..++ +++.- -|.| +..||+++|+| +|+--+.+-.. .. +-|+.+++ .+.
T Consensus 342 ~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-------~l-~~gllVnP--~d~ 409 (456)
T TIGR02400 342 RSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-------EL-NGALLVNP--YDI 409 (456)
T ss_pred CCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-------Hh-CCcEEECC--CCH
Confidence 456654 4566666 77753 4655 77899999999 66655443221 22 34566665 489
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 401 DETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 401 ~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+.++++|.++|+++. ++.+++.+++.+.+.+ .+...-.+.|++.|
T Consensus 410 ~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l 454 (456)
T TIGR02400 410 DGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHh
Confidence 999999999998642 2455566666666554 55555566666655
No 148
>PLN02939 transferase, transferring glycosyl groups
Probab=92.27 E-value=3.8 Score=44.69 Aligned_cols=133 Identities=10% Similarity=0.097 Sum_probs=72.9
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccch---hhhhhh--CCCceEeeccChH---hhhcccC
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPK---GFLERT--KSYGKVVPWAPQL---KILEHSS 344 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~---~~~~~~--~~nv~v~~~vp~~---~ll~~~~ 344 (454)
+++...|..... ..+.+...+..+...+.+++++-.+... ..-+ .+.++. .++|.+..+.+.. .++..++
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~-~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaAD 858 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVP-HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASD 858 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcH-HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCC
Confidence 455556666532 1233333333333346676666544221 1111 122222 3578888887764 4776666
Q ss_pred cceEEecC---Cc-hhHHHHHHcCCCeecccccc--chhHH--HHHH-HHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 345 VCVFVTHC---GW-NSTIEGITGGVPMVCRPVFA--DQALN--QRII-ETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 345 ~~~~I~Hg---G~-gsv~eal~~GvP~i~~P~~~--DQ~~n--A~~v-~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+||.-+ |+ .+.+||+++|+|.|+....+ |-..+ ...+ +.- +-|..++.. +++.+.+++.++++
T Consensus 859 --IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf~~~--D~eaLa~AL~rAL~ 930 (977)
T PLN02939 859 --MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTFLTP--DEQGLNSALERAFN 930 (977)
T ss_pred --EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEecCC--CHHHHHHHHHHHHH
Confidence 888643 22 48899999999999876543 21111 0001 123 456666553 78889999888774
No 149
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.26 E-value=2.2 Score=36.59 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=52.6
Q ss_pred cCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCC-CcchHHHHHHhchHHHHHHHHHHHHhcCC
Q 012893 38 ALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGN-PREPVEHFLKATPGNFVRALEKAVAKTGL 116 (454)
Q Consensus 38 ~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (454)
++| |+|+|+|.......- . |++.+.... +........ ....++.-.... ....+.+.++.++ +.
T Consensus 1 q~g--h~v~fl~~~~~~~~~--~-------GV~~~~y~~--~~~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~~-Gf 65 (171)
T PF12000_consen 1 QRG--HEVVFLTERKRPPIP--P-------GVRVVRYRP--PRGPTPGTHPYVRDFEAAVLRG-QAVARAARQLRAQ-GF 65 (171)
T ss_pred CCC--CEEEEEecCCCCCCC--C-------CcEEEEeCC--CCCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHc-CC
Confidence 479 999999964433322 3 666665531 111111111 122222222222 3344445555444 67
Q ss_pred CccEEEEcCchhhHHHHHHHc-CCCeEEEe
Q 012893 117 EISCLITDAFLWFAAEMAEEM-RVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~l-giP~v~~~ 145 (454)
.||+|+...--..++-+-+.+ ++|.+.++
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 899999996555666688888 99999875
No 150
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.89 E-value=1.3 Score=45.52 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCceEeeccC--h-HhhhcccCcceEEecC---CchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCC
Q 012893 326 SYGKVVPWAP--Q-LKILEHSSVCVFVTHC---GWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFT 399 (454)
Q Consensus 326 ~nv~v~~~vp--~-~~ll~~~~~~~~I~Hg---G~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 399 (454)
..|.+.++.+ . ...+.++. ++|.-+ |.++..||+.+|+|+| .......|+.. .=|..+ -+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li----~d 474 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII----DD 474 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe----CC
Confidence 4566667777 3 46776666 888766 7889999999999999 33334455555 556555 27
Q ss_pred HHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHH
Q 012893 400 KDETVNALKQVLSSE-EGKRMRENVGALKKLAFK 432 (454)
Q Consensus 400 ~~~l~~av~~vl~~~-~~~~~~~~a~~l~~~~~~ 432 (454)
..+|.+++..+|.+. ....+...+.+.+++..+
T Consensus 475 ~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~ 508 (519)
T TIGR03713 475 ISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSS 508 (519)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence 899999999999987 345666666666655443
No 151
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=90.50 E-value=0.76 Score=38.19 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHHHhchHHHH
Q 012893 25 APLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFLKATPGNFV 104 (454)
Q Consensus 25 ~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (454)
.-+..|+++| .++| |+|++++.......-+.. . .++++..++-. .... ....+..+ ..
T Consensus 5 ~~~~~l~~~L--~~~G--~~V~v~~~~~~~~~~~~~---~--~~~~~~~~~~~--~~~~----~~~~~~~~-----~~-- 62 (160)
T PF13579_consen 5 RYVRELARAL--AARG--HEVTVVTPQPDPEDDEEE---E--DGVRVHRLPLP--RRPW----PLRLLRFL-----RR-- 62 (160)
T ss_dssp HHHHHHHHHH--HHTT---EEEEEEE---GGG-SEE---E--TTEEEEEE--S---SSS----GGGHCCHH-----HH--
T ss_pred HHHHHHHHHH--HHCC--CEEEEEecCCCCcccccc---c--CCceEEeccCC--ccch----hhhhHHHH-----HH--
Confidence 3467899999 8999 999999976554432111 1 37888777511 1100 00010100 11
Q ss_pred HHHHHHHHhcCCCccEEEEcCch-hhHHHHHH-HcCCCeEEEeC
Q 012893 105 RALEKAVAKTGLEISCLITDAFL-WFAAEMAE-EMRVPWIAYWT 146 (454)
Q Consensus 105 ~~~~~~~~~~~~~pD~vi~d~~~-~~~~~~A~-~lgiP~v~~~~ 146 (454)
+..++.....+||+|.+.... .....++. ..++|+|....
T Consensus 63 --~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 63 --LRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp --HHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred --HHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 122221113589999877532 22223444 88999998654
No 152
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.41 E-value=1.4 Score=38.87 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
||||++-=-+. +-.-+..|+++| ++.| |+|+++++.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L--~~~g--~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKAL--SALG--HDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHH--TTTS--SEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHH--HhcC--CeEEEEeCCCCCc
Confidence 57777766555 455577899999 8899 9999999976654
No 153
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.37 E-value=17 Score=33.89 Aligned_cols=131 Identities=21% Similarity=0.333 Sum_probs=72.3
Q ss_pred EEEEeeCCCCC-CCHHHHHHHHHHHHhcC--CCEEEEEcCCcc-cccchhhhhhh--CCCceEeeccC---hHhhhcccC
Q 012893 274 VIYISFGSMIT-PPRAEVIALAEALEAIG--FPFLWSFRGNAE-EQLPKGFLERT--KSYGKVVPWAP---QLKILEHSS 344 (454)
Q Consensus 274 ~v~vs~Gs~~~-~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~-~~l~~~~~~~~--~~nv~v~~~vp---~~~ll~~~~ 344 (454)
.+++..|.... .....+...+..+.... ..+++...+... ..+.. ..... ..++...++++ ...++..++
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEK-LAKKLGLEDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHH-HHHHhCCCCcEEEecccCHHHHHHHHHhCC
Confidence 46666777543 23333334444444332 344444333321 11222 22221 25677788888 234566565
Q ss_pred cceEEec---CCchh-HHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 345 VCVFVTH---CGWNS-TIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 345 ~~~~I~H---gG~gs-v~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
+++.. .|.|. +.||+++|+|.|.... ......+... +.|...... ..+.+.+++..++++.
T Consensus 279 --~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~~~~~~--~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 279 --VFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGLLVPPG--DVEELADALEQLLEDP 343 (381)
T ss_pred --EEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceEecCCC--CHHHHHHHHHHHhcCH
Confidence 77766 35554 5999999999976543 2233333333 346633332 6899999999999885
No 154
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=88.76 E-value=5.3 Score=33.60 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.8
Q ss_pred CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC
Q 012893 20 FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN 54 (454)
Q Consensus 20 ~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~ 54 (454)
..|=-.-+..|+++| .++| |+|++++.....
T Consensus 11 ~GG~e~~~~~l~~~l--~~~G--~~v~v~~~~~~~ 41 (177)
T PF13439_consen 11 IGGAERVVLNLARAL--AKRG--HEVTVVSPGVKD 41 (177)
T ss_dssp SSHHHHHHHHHHHHH--HHTT---EEEEEESS-TT
T ss_pred CChHHHHHHHHHHHH--HHCC--CEEEEEEcCCCc
Confidence 677778889999999 9999 999999886443
No 155
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=88.28 E-value=14 Score=34.75 Aligned_cols=132 Identities=19% Similarity=0.199 Sum_probs=80.4
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHH-H--hcCCCEEEEEcCC--cc---cccchhhhhhhC-CCceEe-eccC---hHhhhc
Q 012893 275 IYISFGSMITPPRAEVIALAEAL-E--AIGFPFLWSFRGN--AE---EQLPKGFLERTK-SYGKVV-PWAP---QLKILE 341 (454)
Q Consensus 275 v~vs~Gs~~~~~~~~~~~~~~~~-~--~~~~~~i~~~~~~--~~---~~l~~~~~~~~~-~nv~v~-~~vp---~~~ll~ 341 (454)
+-|-.|.++..+.+.++. ++.+ . ..+.++++-.+-. .. ..+-..-.+--+ +|+.+. +++| +..+|.
T Consensus 147 ~tIlvGNSgd~SN~Hie~-L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 147 MTILVGNSGDRSNRHIEA-LRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred eEEEEeCCCCCcccHHHH-HHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHH
Confidence 444567777655544443 3333 2 2345666666542 21 001110011123 677764 7777 678999
Q ss_pred ccCcceEEec--CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 342 HSSVCVFVTH--CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 342 ~~~~~~~I~H--gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
.|+++.|+|+ =|.||++-.++.|+|+++-- +-+.|.. +.+. |+-+-.+.+.++...+.++=+++..
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e~-gv~Vlf~~d~L~~~~v~e~~rql~~ 293 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTEQ-GLPVLFTGDDLDEDIVREAQRQLAS 293 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHhC-CCeEEecCCcccHHHHHHHHHHHHh
Confidence 9998888876 48999999999999998763 3333333 4444 7777666777888888777555443
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=87.96 E-value=9.2 Score=38.36 Aligned_cols=122 Identities=11% Similarity=0.133 Sum_probs=78.3
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHh-cCCCEEEEEcCCcccccchhhhhhhCCCceEe-eccC--hHhhhcccCcceE
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEA-IGFPFLWSFRGNAEEQLPKGFLERTKSYGKVV-PWAP--QLKILEHSSVCVF 348 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~-~~vp--~~~ll~~~~~~~~ 348 (454)
.+++++ ..+.++.+...... ++..+-+..+..-...|- .+ ++. +|+.+. ++.+ -..++..|++-+-
T Consensus 284 ~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~-~L-~~y-~nvvly~~~~~~~l~~ly~~~dlyLd 353 (438)
T TIGR02919 284 QALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEMSSKLM-SL-DKY-DNVKLYPNITTQKIQELYQTCDIYLD 353 (438)
T ss_pred cEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcccHHHH-HH-Hhc-CCcEEECCcChHHHHHHHHhccEEEE
Confidence 466665 24556666666555 466776655443111121 12 122 788877 5566 3689999998888
Q ss_pred EecCC--chhHHHHHHcCCCeeccccccc-hhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 349 VTHCG--WNSTIEGITGGVPMVCRPVFAD-QALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 349 I~HgG--~gsv~eal~~GvP~i~~P~~~D-Q~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
|+||+ ..++.||+.+|+|++..=.... +..... |-.++.+ +.+++.++|.++|+|+
T Consensus 354 in~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~--------g~l~~~~--~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 354 INHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS--------ENIFEHN--EVDQLISKLKDLLNDP 412 (438)
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecccCCcccccC--------CceecCC--CHHHHHHHHHHHhcCH
Confidence 89876 5699999999999998754322 111111 3333333 6899999999999986
No 157
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.24 E-value=2.8 Score=35.30 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVE 75 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 75 (454)
+|||.+.-.|+-|-..-++.++..| ++.| +.|-=+-++.-.+--... ||+.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L--~~~g--~kvgGf~t~EVR~gGkR~-------GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL--REKG--YKVGGFITPEVREGGKRI-------GFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH--HhcC--ceeeeEEeeeeecCCeEe-------eeEEEEcc
Confidence 5899999999999999999999999 9999 999766666655555555 89999886
No 158
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.82 E-value=1.9 Score=40.08 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=59.3
Q ss_pred CCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhH--HHHHHHHhhceeecCcCCCCCHHH
Q 012893 326 SYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQAL--NQRIIETAWGIGVGVXGEKFTKDE 402 (454)
Q Consensus 326 ~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~--nA~~v~~~~G~G~~~~~~~~~~~~ 402 (454)
+|..+. .+-.+.++|.+++ +.|--.|. .+-+++-.|||+|.+|-.+-|+. .|.+=.+++|+.+.+-.. .+..
T Consensus 294 dnc~l~lsqqsfadiLH~ad--aalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~--~aq~ 368 (412)
T COG4370 294 DNCSLWLSQQSFADILHAAD--AALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP--EAQA 368 (412)
T ss_pred CceEEEEeHHHHHHHHHHHH--HHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC--chhh
Confidence 455543 6666777777776 55544442 23456788999999999999876 555656666888776542 3333
Q ss_pred HHHHHHHHhcCchHHHHHHHHH
Q 012893 403 TVNALKQVLSSEEGKRMRENVG 424 (454)
Q Consensus 403 l~~av~~vl~~~~~~~~~~~a~ 424 (454)
-..++.+++.|+ .+-++++
T Consensus 369 a~~~~q~ll~dp---~r~~air 387 (412)
T COG4370 369 AAQAVQELLGDP---QRLTAIR 387 (412)
T ss_pred HHHHHHHHhcCh---HHHHHHH
Confidence 344455599998 5555555
No 159
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=84.79 E-value=5 Score=40.68 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=60.8
Q ss_pred eeccChH---hhhcccCcceEEe---cCCch-hHHHHHHcCCC----eeccccccchhHHHHHHHHhhceeecCcCCCCC
Q 012893 331 VPWAPQL---KILEHSSVCVFVT---HCGWN-STIEGITGGVP----MVCRPVFADQALNQRIIETAWGIGVGVXGEKFT 399 (454)
Q Consensus 331 ~~~vp~~---~ll~~~~~~~~I~---HgG~g-sv~eal~~GvP----~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~ 399 (454)
.+++++. .++..++ ++|. +-|.| ++.||+++|+| +|+--..+-.. .. .-|..++.. +
T Consensus 346 ~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~-------~~-~~g~lv~p~--d 413 (460)
T cd03788 346 YRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAE-------EL-SGALLVNPY--D 413 (460)
T ss_pred eCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEeccccchh-------hc-CCCEEECCC--C
Confidence 3677754 5577776 6664 34544 67899999999 54443322111 12 345666653 7
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 400 KDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 400 ~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
.+.++++|.++++++.. ..+++.++..+.+.+ .+...-...+++.|
T Consensus 414 ~~~la~ai~~~l~~~~~-e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 414 IDEVADAIHRALTMPLE-ERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 89999999999987521 223333333333332 55555556666554
No 160
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=84.27 E-value=3.5 Score=40.29 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=63.4
Q ss_pred CCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcC-----CCCC
Q 012893 326 SYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXG-----EKFT 399 (454)
Q Consensus 326 ~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~-----~~~~ 399 (454)
+++..+ +..+...+|..++ ++||=-. ..+.|.+..++|+|......|++... . |.-..... -.-+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aD--iLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAAD--ILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcC--EEEEech-hHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCC
Confidence 566655 4556789998877 9999884 58999999999999887666665222 2 33322211 1136
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 012893 400 KDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKA 446 (454)
Q Consensus 400 ~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 446 (454)
.++|.++|..+++++ ..++++-++..+++-. ..-|.++++-++.
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~ 366 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNY 366 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHH
Confidence 799999999988764 2455666666666644 2233444444333
No 161
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=83.86 E-value=4.5 Score=41.64 Aligned_cols=75 Identities=8% Similarity=0.055 Sum_probs=46.2
Q ss_pred ChHhhhcccCcceEEe---cCCch-hHHHHHHcCCCeecccccc-chhHHHHHHHHhhc--eeecCcCC---C--CCHHH
Q 012893 335 PQLKILEHSSVCVFVT---HCGWN-STIEGITGGVPMVCRPVFA-DQALNQRIIETAWG--IGVGVXGE---K--FTKDE 402 (454)
Q Consensus 335 p~~~ll~~~~~~~~I~---HgG~g-sv~eal~~GvP~i~~P~~~-DQ~~nA~~v~~~~G--~G~~~~~~---~--~~~~~ 402 (454)
+...++..|+ ++|. +=|+| ++.||+++|+|+|.-...+ ..... -+... + .|+.+... . -+.++
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhcc-CCCceEEEecCCccchHHHHHH
Confidence 4667776666 7776 34555 8999999999999876532 22111 11111 2 46666421 1 24578
Q ss_pred HHHHHHHHhcCc
Q 012893 403 TVNALKQVLSSE 414 (454)
Q Consensus 403 l~~av~~vl~~~ 414 (454)
|++++.++++.+
T Consensus 542 La~~m~~~~~~~ 553 (590)
T cd03793 542 LTQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHHhCCc
Confidence 888888888654
No 162
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=82.91 E-value=36 Score=32.65 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=84.7
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHH---hcCCCEEEEEcCCc-cc----ccchhhhhhhC-CCceE-eeccC---hHhhh
Q 012893 274 VIYISFGSMITPPRAEVIALAEALE---AIGFPFLWSFRGNA-EE----QLPKGFLERTK-SYGKV-VPWAP---QLKIL 340 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~----~l~~~~~~~~~-~nv~v-~~~vp---~~~ll 340 (454)
.+.|-.|.++..+.+.++.+ +.+. ..+.++++-.+-+. .. .+-..-.+.-+ +|+.+ .+++| +..+|
T Consensus 185 ~ltILvGNSgd~sNnHieaL-~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEAL-EALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred ceEEEEcCCCCCCccHHHHH-HHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 45566687776555444433 2232 23567776666432 11 11111111122 47765 47888 57899
Q ss_pred cccCcceEEec--CCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 341 EHSSVCVFVTH--CGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 341 ~~~~~~~~I~H--gG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
..|+++.|+|. =|.|+++-.++.|+|+++- .+...-..+.+. |+=+-...++++...|.++=+++..
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~-~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQ-GIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhC-CCeEEeccccCCHHHHHHHHHHHhh
Confidence 99997777764 5899999999999999865 233333445566 7777777778999999999888765
No 163
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=82.70 E-value=7 Score=42.49 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=60.2
Q ss_pred HhhhcccCcceEEecC---Cch-hHHHHHHcCCC---eeccc-cccchhHHHHHHHHhhc-eeecCcCCCCCHHHHHHHH
Q 012893 337 LKILEHSSVCVFVTHC---GWN-STIEGITGGVP---MVCRP-VFADQALNQRIIETAWG-IGVGVXGEKFTKDETVNAL 407 (454)
Q Consensus 337 ~~ll~~~~~~~~I~Hg---G~g-sv~eal~~GvP---~i~~P-~~~DQ~~nA~~v~~~~G-~G~~~~~~~~~~~~l~~av 407 (454)
.+++..++ +++.-+ |.| +..|++++|+| ++++. +.+- +. .+ | -|+.+++ .+.+.++++|
T Consensus 370 ~aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~----~~---~l-~~~allVnP--~D~~~lA~AI 437 (797)
T PLN03063 370 CALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA----GQ---SL-GAGALLVNP--WNITEVSSAI 437 (797)
T ss_pred HHHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc----hh---hh-cCCeEEECC--CCHHHHHHHH
Confidence 36676776 777554 777 66799999999 44443 3331 11 13 4 4677776 4899999999
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 408 KQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 408 ~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
.++|+.+. +.-+++.+++.+.+++ .+...-.+.|++.+.
T Consensus 438 ~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 438 KEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELN 476 (797)
T ss_pred HHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHH
Confidence 99998431 2344455555555444 444444555555543
No 164
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=82.63 E-value=5.4 Score=37.07 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=49.0
Q ss_pred HHHHHHHHhc-CCCEEEEEcCCcccccchhhhhhh--CCC-ceEeeccChHhhhcccCcceEEecCCchhHHHHHHcCCC
Q 012893 291 IALAEALEAI-GFPFLWSFRGNAEEQLPKGFLERT--KSY-GKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVP 366 (454)
Q Consensus 291 ~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~~~~--~~n-v~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP 366 (454)
..+....+.. +.++++..-+.........+.+.. ..+ +.+.+-++-..++.+++ .|||-.+ ++-.||+.+|+|
T Consensus 144 ~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkp 220 (269)
T PF05159_consen 144 DMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKP 220 (269)
T ss_pred HHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCc
Confidence 3444444443 567666655532111112222222 133 34457788889999988 8888876 488999999999
Q ss_pred eecccc
Q 012893 367 MVCRPV 372 (454)
Q Consensus 367 ~i~~P~ 372 (454)
++++..
T Consensus 221 Vi~~G~ 226 (269)
T PF05159_consen 221 VIVFGR 226 (269)
T ss_pred eEEecC
Confidence 999853
No 165
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=82.16 E-value=17 Score=38.79 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=99.1
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCccc----------------------------ccchhhhhhh
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEE----------------------------QLPKGFLERT 324 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------------~l~~~~~~~~ 324 (454)
.++|+++=.+..++.......+..+.+.|.++++.+|.+... .+++.-....
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 489999888877777888899999999999999999986311 1111111112
Q ss_pred CCCceEe-eccChHhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHH
Q 012893 325 KSYGKVV-PWAPQLKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDET 403 (454)
Q Consensus 325 ~~nv~v~-~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l 403 (454)
..++.++ +--|+. ---+.|+|..-.=. +-+.+|--.-|-.+..+ -+|+..... ..+.-
T Consensus 652 ~~~~~vFaR~~P~H----------------K~kIVeaLq~~gei--vAMTGDGVNDApALK~A-dIGIAMG~~--GTdVa 710 (972)
T KOG0202|consen 652 VRRVLVFARAEPQH----------------KLKIVEALQSRGEV--VAMTGDGVNDAPALKKA-DIGIAMGIS--GTDVA 710 (972)
T ss_pred hhcceEEEecCchh----------------HHHHHHHHHhcCCE--EEecCCCccchhhhhhc-ccceeecCC--ccHhh
Confidence 2233333 122222 12356666655444 34578888888888888 888887642 44566
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 404 VNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 404 ~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
++|=+-||.|+ +|.. +-.|.++|..-..++..||++++-
T Consensus 711 KeAsDMVL~DD---nFst--------IvaAVEEGr~IynNik~Fir~~lS 749 (972)
T KOG0202|consen 711 KEASDMVLADD---NFST--------IVAAVEEGRAIYNNIKNFIRYLLS 749 (972)
T ss_pred HhhhhcEEecC---cHHH--------HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 67777788887 5654 334566778888999999998874
No 166
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.67 E-value=45 Score=31.00 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=63.1
Q ss_pred CceEeeccCh---HhhhcccCcceEEecCCchhHHHHHHcCCCee--ccccccchhHHHHHHHHhh-ceeecCcCCCCCH
Q 012893 327 YGKVVPWAPQ---LKILEHSSVCVFVTHCGWNSTIEGITGGVPMV--CRPVFADQALNQRIIETAW-GIGVGVXGEKFTK 400 (454)
Q Consensus 327 nv~v~~~vp~---~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i--~~P~~~DQ~~nA~~v~~~~-G~G~~~~~~~~~~ 400 (454)
++.+++|+|| +.+|..|++.+|- |--|+..|..+|+|.+ +.|+.. ...-+.++..| ...--++.. ++
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~VR---GEDSFVRAq~agkPflWHIYpQde--ntHl~KLeaFldky~~~lp~~--~a 311 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLVR---GEDSFVRAQLAGKPFLWHIYPQDE--NTHLAKLEAFLDKYCPFLPPN--TA 311 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccceee---cchHHHHHHHcCCCcEEEecCCcc--ccHHHHHHHHHHHhCCCCCHH--HH
Confidence 4455689996 5789888865543 7789999999999998 666432 22223334332 111111111 22
Q ss_pred HHHHHHHHHHhcCc---h-------HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012893 401 DETVNALKQVLSSE---E-------GKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVV 451 (454)
Q Consensus 401 ~~l~~av~~vl~~~---~-------~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+.++..-...-.++ + .+..|+.|++++..+-. ..+-...+..|+++.
T Consensus 312 ~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~----~~dlaekLvaF~ek~ 368 (370)
T COG4394 312 KALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIK----NPDLAEKLVAFIEKI 368 (370)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHcc----CccHHHHHHHHHHHh
Confidence 22222221111111 0 13677777777777655 355666677777654
No 167
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=81.43 E-value=3.4 Score=37.73 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCCcEEEEeeCCCCC---CCHHHHHHHHHHHHhcCCCEEEEEcCCcc-cccchhhhhhhCCCc-eEeeccC---hHhhhc
Q 012893 270 ENASVIYISFGSMIT---PPRAEVIALAEALEAIGFPFLWSFRGNAE-EQLPKGFLERTKSYG-KVVPWAP---QLKILE 341 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~~~~~~nv-~v~~~vp---~~~ll~ 341 (454)
.+++.|.+..|+... .+.+.+.++++.+.+.++.+++..++... ...-+...+..+.++ .+.+-.+ ..+++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 345677777777653 26788899999998877666555554331 111111222222222 2333333 358888
Q ss_pred ccCcceEEecCCchhHHHHHHcCCCeecc
Q 012893 342 HSSVCVFVTHCGWNSTIEGITGGVPMVCR 370 (454)
Q Consensus 342 ~~~~~~~I~HgG~gsv~eal~~GvP~i~~ 370 (454)
+++ ++|+.-. |.++=|.+.|+|+|++
T Consensus 183 ~a~--~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 183 RAD--LVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp TSS--EEEEESS-HHHHHHHHTT--EEEE
T ss_pred cCC--EEEecCC-hHHHHHHHHhCCEEEE
Confidence 887 9998765 8899999999999977
No 168
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.45 E-value=2.4 Score=35.02 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=39.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 8 TQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
+++.+||+.+.++-+|-.-..-++..| +++| ++|++++.....+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~l--r~~G--~eVi~LG~~vp~e~ 45 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRAL--TEAG--FEVINLGVMTSQEE 45 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHH--HHCC--CEEEECCCCCCHHH
Confidence 467899999999999999999999999 9999 99999998655443
No 169
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.78 E-value=4.1 Score=37.78 Aligned_cols=51 Identities=10% Similarity=0.003 Sum_probs=38.1
Q ss_pred ceEEecCCchhHHHHHH------cCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 346 CVFVTHCGWNSTIEGIT------GGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 346 ~~~I~HgG~gsv~eal~------~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
+++|+-||=||+..|+. .++|++.+ ..|..---.+..++++.+.+.+++++
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGI-----------------N~G~lGFL~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGV-----------------HTGHLGFYTDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEE-----------------eCCCceecccCCHHHHHHHHHHHHcC
Confidence 49999999999999986 47888877 34432222235678888888888875
No 170
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=77.58 E-value=38 Score=31.22 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 7 STQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
+.++||||++-=-+. |---+.+|+++| ++.| +|+++++.....
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l--~~~g---~V~VvAP~~~~S 44 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASM--KKIG---RVTVVAPAEPHS 44 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHH--HhCC---CEEEEcCCCCCC
Confidence 345789887754333 223466889999 7777 598888865443
No 171
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=76.37 E-value=80 Score=30.89 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=64.6
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCccc-ccchhhhhhhCCCceEeeccChHhhhcccCcceEEec
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEE-QLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTH 351 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~H 351 (454)
|-|.-..||++ .+|.+.+...+..+++.+|+..+- .+-.++ ++...++.|+ .+-|+
T Consensus 195 P~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGGGLiaGIat~v-k~~~p~vkII---------------GVEt~ 251 (457)
T KOG1250|consen 195 PDIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGGGLIAGIATGV-KRVGPHVKII---------------GVETE 251 (457)
T ss_pred chhhcCcchHH-------HHHHHhhcCCCCeEEEecCCchhHHHHHHHH-HHhCCCCceE---------------EEeec
Confidence 34555556654 367777777777788888876532 122222 2333344443 34444
Q ss_pred CCchhHHHHHHcCCCee--ccccccch------hHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 352 CGWNSTIEGITGGVPMV--CRPVFADQ------ALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 352 gG~gsv~eal~~GvP~i--~~P~~~DQ------~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
|+.++..|+.+|.|+. .++..+|- ..|+.++.+. -+= +-.-.+.++|..+|.++++|+
T Consensus 252 -~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~-~~d---~vvvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 252 -GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQK-LVD---RVVVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred -CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHh-cCc---eEEEeccHHHHHHHHHHHHhh
Confidence 5678999999999974 22223331 2233333333 111 111247789999999999875
No 172
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=75.62 E-value=5.5 Score=37.54 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=38.1
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+-||=||+.+++.. ++|++.+ .+|..---.+.+.+++.+++.+++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGI-----------------n~G~lGFL~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGI-----------------NHGRLGFITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEE-----------------cCCCccccccCCHHHHHHHHHHHHcC
Confidence 3499999999999999874 6787766 33332222235778899999988876
No 173
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.56 E-value=5.7 Score=37.67 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=39.6
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||+..|++. ++|++.+ ..|..---.+...+++.+++.+++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGI-----------------N~G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTI-----------------NTGHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEE-----------------eCCCCcccccCCHHHHHHHHHHHHcC
Confidence 4599999999999999874 7898877 44422223335778999999999876
No 174
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.53 E-value=6.3 Score=37.03 Aligned_cols=52 Identities=12% Similarity=-0.025 Sum_probs=38.8
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+-||=||+..++.. ++|++.+ .+|..---.+...+++.+++.+++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGI-----------------N~G~lGFLt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGI-----------------HAGHLGFLTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEE-----------------eCCCcccCCcCCHHHHHHHHHHHHcC
Confidence 3499999999999988763 7788777 44433223346788899999998876
No 175
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.12 E-value=6 Score=37.29 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=39.9
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||++.++.. ++|++.+ ..|..---.+..++++.+++.+++++
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGI-----------------N~G~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGI-----------------NTGRLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEE-----------------ecCCCCcccccCHHHHHHHHHHHHcC
Confidence 3499999999999999873 7888877 44433223346788999999999886
No 176
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=71.52 E-value=66 Score=29.58 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
||||++-=-+. |---..+|+++| ++ + |+|+++++.....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l--~~-~--~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELL--SK-Y--HEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHH--Hh-C--CcEEEEccCCCCc
Confidence 46666544322 222377889999 64 7 7999998875544
No 177
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.05 E-value=9.3 Score=35.56 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=38.9
Q ss_pred cceEEecCCchhHHHHHH-cCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGIT-GGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~-~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||+..++. ..+|++.+ ..|..---.+.+.+++.+++.+++++
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGI-----------------N~G~lGFL~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGI-----------------NMGGLGFLTEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEE-----------------ECCCCccCcccCHHHHHHHHHHHHcC
Confidence 349999999999999988 45677666 33433222346789999999999986
No 178
>PLN02929 NADH kinase
Probab=70.86 E-value=34 Score=32.31 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=41.5
Q ss_pred cceEEecCCchhHHHHHHc---CCCeecccccc------chhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG---GVPMVCRPVFA------DQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~---GvP~i~~P~~~------DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+-||=||+..|+.. ++|++.+=... .+.+|..- +.. .+|.-.. .+.+++.+++.+++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~~---~~~~~~~~~L~~il~g 137 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLCA---ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Ccccccc---CCHHHHHHHHHHHHcC
Confidence 3499999999999999654 68887764321 12222211 111 2443333 4688999999999986
No 179
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.55 E-value=7.7 Score=36.65 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=38.6
Q ss_pred cceEEecCCchhHHHHHH----cCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGIT----GGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~----~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||+..|++ .++|++.+ ..|..---.+.+.+++.+++.+++++
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGI-----------------N~G~lGFL~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGI-----------------NQGHLGFLTQIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEE-----------------ecCCCeEeeccCHHHHHHHHHHHHcC
Confidence 349999999999999975 37888877 34432222235788899999998876
No 180
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.32 E-value=8.8 Score=36.39 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=38.8
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||+..|+.. ++|++.+ ..|..---.+..++++.+++.+++++
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGI-----------------N~G~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGV-----------------NLGHVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEE-----------------ecCCCceeccCCHHHHHHHHHHHHcC
Confidence 3599999999999999764 7888877 33332222235678899999999876
No 181
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.57 E-value=9.7 Score=35.89 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=39.0
Q ss_pred cceEEecCCchhHHHHHH----cCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGIT----GGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~----~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||+..++. .++|++.+ +.|..---.+..++++.+++.+++++
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgi-----------------n~G~lGFl~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGI-----------------NRGNLGFLTDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEE-----------------ECCCCCcccccCHHHHHHHHHHHHcC
Confidence 349999999999999985 36788776 44442222335789999999999876
No 182
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=68.24 E-value=1.2e+02 Score=29.55 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCccc-ccchhhh--------hhhCCCce--EeeccCh---HhhhcccCcceEEecC
Q 012893 287 RAEVIALAEALEAIGFPFLWSFRGNAEE-QLPKGFL--------ERTKSYGK--VVPWAPQ---LKILEHSSVCVFVTHC 352 (454)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~--------~~~~~nv~--v~~~vp~---~~ll~~~~~~~~I~Hg 352 (454)
...+..++++++..+.++.+.+.++... .+...+. ....+++. +.+|+|| +.+|..|+. -+-.
T Consensus 194 ~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--NfVR- 270 (374)
T PF10093_consen 194 NAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--NFVR- 270 (374)
T ss_pred chHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--ceEe-
Confidence 3456677777777666666665554311 1100000 00124444 4589996 689988884 3333
Q ss_pred CchhHHHHHHcCCCee--ccccc
Q 012893 353 GWNSTIEGITGGVPMV--CRPVF 373 (454)
Q Consensus 353 G~gsv~eal~~GvP~i--~~P~~ 373 (454)
|-=|+..|..+|+|+| +.|+.
T Consensus 271 GEDSfVRAqwAgkPFvWhIYpQ~ 293 (374)
T PF10093_consen 271 GEDSFVRAQWAGKPFVWHIYPQE 293 (374)
T ss_pred cchHHHHHHHhCCCceEecCcCc
Confidence 5679999999999999 66653
No 183
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.79 E-value=13 Score=34.39 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.0
Q ss_pred cceEEecCCchhHHHHHH-cCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGIT-GGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~-~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||+..|+. +++|++.+ ..|..---.+...+++.+++.+++++
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgi-----------------n~G~lGfl~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGF-----------------KAGRLGFLSSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEE-----------------eCCCCccccccCHHHHHHHHHHHHcC
Confidence 359999999999999987 57787766 33322222235778888999988876
No 184
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=66.47 E-value=12 Score=34.06 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
||||+.-=-+ =|---..+|+++| + .+ ++|+++++.....
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al--~-~~--~dV~VVAP~~~qS 39 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARAL--R-EG--ADVTVVAPDREQS 39 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHH--h-hC--CCEEEEccCCCCc
Confidence 3555443222 2444466889999 7 78 8999999976654
No 185
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=66.27 E-value=7.7 Score=30.88 Aligned_cols=39 Identities=10% Similarity=-0.046 Sum_probs=34.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN 54 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~ 54 (454)
|||+.+.++-.|.....-++..| ++.| ++|.+.......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l--~~~G--~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARAL--RDAG--FEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHH--HHCC--CEEEECCCCCCH
Confidence 58999999999999999999999 9999 999887764433
No 186
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=65.74 E-value=46 Score=31.85 Aligned_cols=42 Identities=10% Similarity=-0.052 Sum_probs=34.9
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 10 RRHVAVLAF-PFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 10 ~~~il~~~~-~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
++||+|++. |+-|=..-..++|-.| .+.| ++|.+++++..+.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~l--A~~g--~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKL--AESG--KKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHH--HHcC--CcEEEEEeCCCCc
Confidence 368888888 7999999999999999 8899 8899998765443
No 187
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=65.46 E-value=22 Score=34.53 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=53.7
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCccc--ccch-hhhh-hhCC-Cce--------------Eeec
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEE--QLPK-GFLE-RTKS-YGK--------------VVPW 333 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~-~~~~-~~~~-nv~--------------v~~~ 333 (454)
.+++.+.||.+...+. .++++.+++.++.+.++......+ .+|. ++.- ..+. .+. +...
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 3666666666533221 246667777889999987665421 1221 1100 0000 000 0000
Q ss_pred cChHhhhcccCcceEEecCCchh---HHHHHHcCCCeecc
Q 012893 334 APQLKILEHSSVCVFVTHCGWNS---TIEGITGGVPMVCR 370 (454)
Q Consensus 334 vp~~~ll~~~~~~~~I~HgG~gs---v~eal~~GvP~i~~ 370 (454)
.--..++.+-+-+++|++||+-| ...|...|+|.++.
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 11123455555569999999997 89999999999874
No 188
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.34 E-value=13 Score=35.15 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=38.5
Q ss_pred cceEEecCCchhHHHHHH----cCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGIT----GGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~----~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||+.+++. .++|++.+. .|..--..+...+++.++|.+++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin-----------------~G~lGFl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGIN-----------------RGRLGFLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEe-----------------CCcccccccCCHHHHHHHHHHHHcC
Confidence 349999999999999975 367887773 3332222346789999999999876
No 189
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=64.43 E-value=4.5 Score=32.88 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=36.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccccc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFME 60 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~ 60 (454)
+||++...|+.+=+. ...+.++| ++.| ++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L--~~~g--~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRL--KRAG--WEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHH--HTTT--SEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHH--hhCC--CEEEEEECCcHHHHhhhh
Confidence 589999999877777 99999999 9999 999999998776666555
No 190
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.28 E-value=12 Score=34.59 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=36.8
Q ss_pred ceEEecCCchhHHHHHHc-----CCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhcC
Q 012893 346 CVFVTHCGWNSTIEGITG-----GVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 346 ~~~I~HgG~gsv~eal~~-----GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
+++|+=||=||+..|+.. .+|.+.+ .. |..---.+.+.+++.+++.+++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgI-----------------n~~G~lGFL~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGI-----------------STKDQLGFYCDFHIDDLDKMIQAITKE 97 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeE-----------------ecCCCCeEcccCCHHHHHHHHHHHHcC
Confidence 499999999999999874 5666555 33 322122335778999999998876
No 191
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=64.17 E-value=97 Score=26.88 Aligned_cols=134 Identities=10% Similarity=0.132 Sum_probs=73.9
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCC-CceEeecc-------ChHhhhcccCc
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKS-YGKVVPWA-------PQLKILEHSSV 345 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~-nv~v~~~v-------p~~~ll~~~~~ 345 (454)
+++.-.||... -....+++.+.+.++.+-++........+.....+...+ .++...+. .|..+...++
T Consensus 4 Ill~vtGsiaa---~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi~l~~~aD- 79 (182)
T PRK07313 4 ILLAVSGSIAA---YKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSKNPVHLDVMDEHDPKLMNHIELAKRAD- 79 (182)
T ss_pred EEEEEeChHHH---HHHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHHHhCCceEeccccccccCCccccccccccC-
Confidence 55555566542 234567777777787776666655433333222233333 23332222 2334444455
Q ss_pred ceEEecCCchhHHH-------------HHHc--CCCeecccc----ccch---hHHHHHHHHhhceeecCcC--------
Q 012893 346 CVFVTHCGWNSTIE-------------GITG--GVPMVCRPV----FADQ---ALNQRIIETAWGIGVGVXG-------- 395 (454)
Q Consensus 346 ~~~I~HgG~gsv~e-------------al~~--GvP~i~~P~----~~DQ---~~nA~~v~~~~G~G~~~~~-------- 395 (454)
.++|.-+-.||+.- ++.. ++|++++|- ..+. ..|..++.+. |+=+.-+.
T Consensus 80 ~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~ 158 (182)
T PRK07313 80 LFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGD 158 (182)
T ss_pred EEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCC
Confidence 47777777765432 2445 899999995 3333 5577777777 76554332
Q ss_pred ----CCCCHHHHHHHHHHHhc
Q 012893 396 ----EKFTKDETVNALKQVLS 412 (454)
Q Consensus 396 ----~~~~~~~l~~av~~vl~ 412 (454)
.-.+.++|.+.+.+.+.
T Consensus 159 ~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 159 EGYGALADIETILETIENTLK 179 (182)
T ss_pred ccCCCCCCHHHHHHHHHHHhc
Confidence 12356777777776654
No 192
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=63.69 E-value=45 Score=33.29 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=22.6
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
+||++|.... +..+|+++|||++.+..
T Consensus 350 ~pDl~Ig~s~---~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 350 RPDLAIGTTP---LVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCCEEEeCCh---hhHHHHHhCCCEEEecC
Confidence 9999999833 56799999999998753
No 193
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=63.02 E-value=23 Score=30.14 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCccEEEEcCchhhHH-H----HHHHc-CCCeEEEeC
Q 012893 104 VRALEKAVAKTGLEISCLITDAFLWFAA-E----MAEEM-RVPWIAYWT 146 (454)
Q Consensus 104 ~~~~~~~~~~~~~~pD~vi~d~~~~~~~-~----~A~~l-giP~v~~~~ 146 (454)
.+.+.+++++. +||+||+........ + ....+ ++|++++.|
T Consensus 78 ~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 78 ARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 33455666665 999999996553332 1 12234 588887754
No 194
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=62.76 E-value=29 Score=29.41 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred cceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 345 VCVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 345 ~~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
..++++++|-| .+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44778877754 6788999999999885
No 195
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=62.16 E-value=34 Score=31.07 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=23.6
Q ss_pred CccEE-EEcCch-hhHHHHHHHcCCCeEEEeCc
Q 012893 117 EISCL-ITDAFL-WFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 117 ~pD~v-i~d~~~-~~~~~~A~~lgiP~v~~~~~ 147 (454)
-||++ |.|... --|..=|.++|||+|.+.-.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 39975 577643 46777899999999998643
No 196
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=61.87 E-value=28 Score=34.78 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.2
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
+||++|+... ...+|+++|||++.+.
T Consensus 355 ~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 355 EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 9999999843 4578999999999975
No 197
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=61.10 E-value=87 Score=28.81 Aligned_cols=39 Identities=8% Similarity=-0.044 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
||||++-=-+. |---..+|+++| + .+ |+|+++++.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l--~-~~--~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYL--S-EK--HEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHH--H-hC--CcEEEEccCCCCc
Confidence 46666544333 233467888999 5 47 7999998875543
No 198
>PRK12342 hypothetical protein; Provisional
Probab=60.53 E-value=18 Score=33.31 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCccEEEEcCchh------hHHHHHHHcCCCeEEEeCc
Q 012893 107 LEKAVAKTGLEISCLITDAFLW------FAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 107 ~~~~~~~~~~~pD~vi~d~~~~------~~~~~A~~lgiP~v~~~~~ 147 (454)
+.+.++.. +||+|++...+. -+..+|+.+|+|++++...
T Consensus 101 La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 44444444 799999875442 3678999999999998653
No 199
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=60.07 E-value=27 Score=34.95 Aligned_cols=37 Identities=5% Similarity=-0.086 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 8 TQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
+++||||++-.+++-| +|+++| ++.+ +-..+++.|.+
T Consensus 2 ~~~~kvLviG~g~reh-----al~~~~--~~~~--~~~~~~~~pgn 38 (426)
T PRK13789 2 QVKLKVLLIGSGGRES-----AIAFAL--RKSN--LLSELKVFPGN 38 (426)
T ss_pred CCCcEEEEECCCHHHH-----HHHHHH--HhCC--CCCEEEEECCc
Confidence 4569999999998776 689999 7777 55455554443
No 200
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=59.86 E-value=32 Score=29.24 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=22.8
Q ss_pred cceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 345 VCVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 345 ~~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
..++++|+|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34889998865 7889999999999986
No 201
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.22 E-value=17 Score=33.82 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=35.8
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
++++|+=||=||+..|++. ++|++.+ ..|..---.+.+++++.+.+.++++
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgI-----------------n~G~lGFL~~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGI-----------------NRGNLGFLTDIDPKNAYEQLEACLE 97 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEE-----------------eCCCCcccccCCHHHHHHHHHHHHh
Confidence 3499999999999988663 6788766 2332211223577888888888887
No 202
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=59.22 E-value=32 Score=37.17 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=61.3
Q ss_pred EeeccChH---hhhcccCcceEEec---CCc-hhHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHH
Q 012893 330 VVPWAPQL---KILEHSSVCVFVTH---CGW-NSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDE 402 (454)
Q Consensus 330 v~~~vp~~---~ll~~~~~~~~I~H---gG~-gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~ 402 (454)
+.+++++. +++..++ +++.- -|. .++.||+++|+|-...|...+- +.-..++ .-|+.+++ .+.+.
T Consensus 346 ~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~---~G~~~~l-~~~llv~P--~d~~~ 417 (726)
T PRK14501 346 FYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEM---AGAAAEL-AEALLVNP--NDIEG 417 (726)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecc---cchhHHh-CcCeEECC--CCHHH
Confidence 34677764 5666666 66654 254 4788999997752222221111 1111123 33666666 47999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 403 TVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 403 l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
++++|.++|+++.. +.+++.+++.+.+++ .+...-.+.|++.+.
T Consensus 418 la~ai~~~l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~ 461 (726)
T PRK14501 418 IAAAIKRALEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELR 461 (726)
T ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 99999999986421 333444444444433 455555556665554
No 203
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.92 E-value=17 Score=37.93 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=39.7
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+-||=||++.+++. ++|++.+ .+|..---.+.+.+++.+++.+++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGi-----------------n~G~lGFL~~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICI-----------------NMGTVGFLTEFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEE-----------------cCCCCCcCcccCHHHHHHHHHHHHcC
Confidence 4699999999999999774 7788877 44433223346788999999999876
No 204
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=58.51 E-value=18 Score=36.56 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=37.6
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||++.|+.. ++|++.+- .. .+|.. .+...+++.++|.+++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN--------~G------~LGFL---t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFS--------MG------SLGFM---TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEe--------CC------Cccee---cccCHHHHHHHHHHHHcC
Confidence 4599999999999999874 46776551 11 13332 335788999999999876
No 205
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.43 E-value=18 Score=33.77 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=36.0
Q ss_pred cceEEecCCchhHHHHHH---cCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGIT---GGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~---~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|.-||=||+.+++. .++|++.++. |..---.++.++++.+++.+++++
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~-----------------G~lGFl~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINM-----------------GTLGFLTEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeC-----------------CCCCccccCCHHHHHHHHHHHHcC
Confidence 359999999999999984 3568777753 211111134677888888888865
No 206
>PRK05973 replicative DNA helicase; Provisional
Probab=57.90 E-value=23 Score=32.20 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSL 57 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~ 57 (454)
=+++...|+.|=..-.+.++... .++| +.|.|++.+...+.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~--a~~G--e~vlyfSlEes~~~i 107 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEA--MKSG--RTGVFFTLEYTEQDV 107 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH--HhcC--CeEEEEEEeCCHHHH
Confidence 45666778999999999999988 6789 999999988765543
No 207
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=57.44 E-value=35 Score=32.74 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCcc-----CHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGT-----HAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRF 84 (454)
Q Consensus 10 ~~~il~~~~~~~G-----H~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 84 (454)
+.-|++.|+.+.| ...-+..|++.| .+.| ++|.+++++...+..++.. .. .+...
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l--~~~~--~~ivl~G~~~e~~~~~~i~-----~~-----~~~~~------ 233 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRL--IDQG--YQVVLFGSAKDHPAGNEIE-----AL-----LPGEL------ 233 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHH--HHCC--CEEEEEEChhhHHHHHHHH-----Hh-----CCccc------
Confidence 3445565544333 244678999999 7789 9999998876544332220 00 00000
Q ss_pred CCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 85 TGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
.+. .....+.+ +..+++ +.|++|+. ..+...+|..+|+|+|.+..
T Consensus 234 -~~l---------~g~~sL~e-l~ali~----~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 234 -RNL---------AGETSLDE-AVDLIA----LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred -ccC---------CCCCCHHH-HHHHHH----hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 000 00011222 233444 45999977 33566899999999999864
No 208
>PLN02470 acetolactate synthase
Probab=56.99 E-value=23 Score=37.15 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=57.1
Q ss_pred eeCCCCCCCH--HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeec--------cChHhhhcccCcce
Q 012893 278 SFGSMITPPR--AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPW--------APQLKILEHSSVCV 347 (454)
Q Consensus 278 s~Gs~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~--------vp~~~ll~~~~~~~ 347 (454)
+|||....+. .....+++.|++.|.+.|+...+.....+-+.+.+ .+++..+.- +-.-.-..+-..++
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv 79 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASGKVGV 79 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhCCCEE
Confidence 4677765543 33567899999999999999888764333333321 123433311 11111111123458
Q ss_pred EEecCCch------hHHHHHHcCCCeeccc
Q 012893 348 FVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 348 ~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
+++|.|-| .+.+|.+.++|||++.
T Consensus 80 ~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 80 CIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred EEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 89998855 7889999999999884
No 209
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=56.43 E-value=17 Score=29.15 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=25.0
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 11 RHVAVLAFPFGT---HAAPLLDLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 11 ~~il~~~~~~~G---H~~p~l~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
|||+|+.-|-.+ .-.-.++|+.+- ++|| |+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eA--q~RG--hev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEA--QRRG--HEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHH--HHTT---EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHH--HHCC--CEEEEEEcCcE
Confidence 577777766433 334677888888 8999 99999988643
No 210
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=55.92 E-value=30 Score=29.43 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.0
Q ss_pred ceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 346 CVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 346 ~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
+++++|+|-| .+.||...++|||++.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 4888898855 6779999999999985
No 211
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=55.87 E-value=19 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=33.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
+|+++.+.+..-|-.-..-++..| ++.| |+|.++....
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l--~~~G--~~v~~~d~~~ 38 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYL--RKAG--HEVDILDANV 38 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHH--HHTT--BEEEEEESSB
T ss_pred CEEEEEeeCCcchhHHHHHHHHHH--HHCC--CeEEEECCCC
Confidence 489999999999999999999999 9999 9999886543
No 212
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=55.11 E-value=1.3e+02 Score=25.46 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=60.2
Q ss_pred EEcCCCccCHHHHH-HHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHH
Q 012893 15 VLAFPFGTHAAPLL-DLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVE 93 (454)
Q Consensus 15 ~~~~~~~GH~~p~l-~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (454)
.+.+...+.+..++ .+|.+| +++| ++|.=+........-... .......++.+-.-.-.........--
T Consensus 3 av~~~~~~~~d~lL~~~a~~L--~~~G--~rv~G~vQ~~~~~~~~~~------~~m~l~dl~~G~~~~IsQ~LG~gs~gC 72 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARL--RARG--VRVAGLVQRNTADGDGGR------CDMDLRDLPSGRRIRISQDLGPGSRGC 72 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHH--HhCC--CeEEEEeccccCCCCCCc------cceEEEECCCCCEEEEeeccCCCCccc
Confidence 45556667777777 679999 9999 988776654322111111 245555554322110000000000000
Q ss_pred HHHHhchHHHHHHHHHHHHhcCCCccEEEEcCch---------hhHHHHHHHcCCCeEEEeCc
Q 012893 94 HFLKATPGNFVRALEKAVAKTGLEISCLITDAFL---------WFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~---------~~~~~~A~~lgiP~v~~~~~ 147 (454)
.+ -...+.+....+.+.+..+||++|.+-|. -.....|-..|||+++..+.
T Consensus 73 rL---D~~~La~A~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 73 RL---DPGALAEASAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred cc---CHHHHHHHHHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 00 00112222222222234489999988542 13334578899999987553
No 213
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=54.86 E-value=67 Score=29.65 Aligned_cols=92 Identities=12% Similarity=0.197 Sum_probs=52.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc-ccccccccCCCCeeEEeCCCCCCCCCCCCCCCc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS-LFMEKDELRDCKIVPYNVESGLPEGFRFTGNPR 89 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 89 (454)
|||+++. +.|. -..|+++| .++| |+|+..+....... +.+. .+.....-
T Consensus 1 m~ILvlG--GT~e---gr~la~~L--~~~g--~~v~~s~~t~~~~~~~~~~------g~~~v~~g--------------- 50 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGL--IAQG--IEILVTVTTSEGKHLYPIH------QALTVHTG--------------- 50 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHH--HhCC--CeEEEEEccCCcccccccc------CCceEEEC---------------
Confidence 3555543 3332 67899999 8899 99998777654432 2222 01111100
Q ss_pred chHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhh------HHHHHHHcCCCeEEEe
Q 012893 90 EPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWF------AAEMAEEMRVPWIAYW 145 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~------~~~~A~~lgiP~v~~~ 145 (454)
.+. ... +..+++. .++|+||--.+.++ +..+++.+|||++.+-
T Consensus 51 -~l~------~~~----l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 51 -ALD------PQE----LREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -CCC------HHH----HHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 000 011 2233333 28898886544433 4458899999999973
No 214
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.78 E-value=18 Score=29.83 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=36.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 8 TQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
.+++||++.+.+.-||=...--++++| +..| .+|...+.-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l--~d~G--feVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARAL--ADAG--FEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHH--HhCC--ceEEecCCcC
Confidence 379999999999999999999999999 9999 9999876643
No 215
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=54.64 E-value=42 Score=34.02 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCccCHHHHH------------HHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 9 QRRHVAVLAFPFGTHAAPLL------------DLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l------------~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
+..|||+...|+.=.+.|.. +||+++ ..+| ++|++++++..
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa--~~~G--A~VtlI~Gp~~ 307 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAA--AAAG--AEVTLISGPVD 307 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHH--HHCC--CcEEEEeCCcC
Confidence 45799999999999998875 899999 8999 99999998753
No 216
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=53.89 E-value=34 Score=34.58 Aligned_cols=40 Identities=10% Similarity=-0.060 Sum_probs=26.2
Q ss_pred HHHHhcCCCccEEEEcCch--hhHHHHHHHcCCCeEEEeCch
Q 012893 109 KAVAKTGLEISCLITDAFL--WFAAEMAEEMRVPWIAYWTAG 148 (454)
Q Consensus 109 ~~~~~~~~~pD~vi~d~~~--~~~~~~A~~lgiP~v~~~~~~ 148 (454)
.+.++++..||+|+.++.. ..|.++|+++|||...+..+.
T Consensus 393 ~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 393 EILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp HHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred HHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 3444445689999988644 467789999999999986653
No 217
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=53.66 E-value=29 Score=32.01 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCccEEEEcCch------hhHHHHHHHcCCCeEEEeCc
Q 012893 106 ALEKAVAKTGLEISCLITDAFL------WFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 106 ~~~~~~~~~~~~pD~vi~d~~~------~~~~~~A~~lgiP~v~~~~~ 147 (454)
.+...++.. +||+|++...+ .-+..+|+.||+|++++...
T Consensus 103 ~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 344444444 79999987443 25668999999999998653
No 218
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.64 E-value=40 Score=28.12 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=47.9
Q ss_pred cccccchhHHHHHHHHhhceeecCcCCCCCH---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 012893 370 RPVFADQALNQRIIETAWGIGVGVXGEKFTK---DETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKA 446 (454)
Q Consensus 370 ~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~---~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 446 (454)
.|+...+-.+|..+.+. .+++++ +.+.+.+.+|+.|. ++-+-++.+++..+.+++..-++ .-.+.
T Consensus 78 yPWt~~~L~aa~el~ee--------~eeLs~deke~~~~sl~dL~~d~--PkT~vA~~rfKk~~~K~g~~v~~--~~~dI 145 (158)
T PF10083_consen 78 YPWTENALEAANELIEE--------DEELSPDEKEQFKESLPDLTKDT--PKTKVAATRFKKILSKAGSIVGD--AIRDI 145 (158)
T ss_pred CchHHHHHHHHHHHHHH--------hhcCCHHHHHHHHhhhHHHhhcC--CccHHHHHHHHHHHHHHhHHHHH--HHHHH
Confidence 67778888888888886 344544 68889999999763 37777888888888876543332 22234
Q ss_pred HHHHHh
Q 012893 447 LVEVVN 452 (454)
Q Consensus 447 ~~~~~~ 452 (454)
+|+-+.
T Consensus 146 lVdv~S 151 (158)
T PF10083_consen 146 LVDVAS 151 (158)
T ss_pred HHHHHH
Confidence 444443
No 219
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=53.58 E-value=60 Score=25.07 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=19.1
Q ss_pred CccEEEEcCch---hhHHHHHHHcCCCeEE
Q 012893 117 EISCLITDAFL---WFAAEMAEEMRVPWIA 143 (454)
Q Consensus 117 ~pD~vi~d~~~---~~~~~~A~~lgiP~v~ 143 (454)
++|+||...-. -.-.+..+..|||+.-
T Consensus 62 ~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 62 KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 89999988533 3455677888999875
No 220
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=53.58 E-value=69 Score=28.31 Aligned_cols=143 Identities=8% Similarity=0.007 Sum_probs=73.6
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhC-CCceEeeccChHhhhcccCcceE
Q 012893 270 ENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTK-SYGKVVPWAPQLKILEHSSVCVF 348 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~-~nv~v~~~vp~~~ll~~~~~~~~ 348 (454)
.++.++.|+.|.++ ...+..+...|..+.++... ..+.+.+... .++...........+..++ +|
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~-----~~~~l~~l~~~~~i~~~~~~~~~~~l~~ad--lV 74 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE-----LTENLVKLVEEGKIRWKQKEFEPSDIVDAF--LV 74 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC-----CCHHHHHHHhCCCEEEEecCCChhhcCCce--EE
Confidence 34568888777664 24556666678777666432 1122222121 2344444444455566666 88
Q ss_pred EecCCchhHHHHHH----cCCCeeccccccchhHHHH-----HHHHhhceeecCcCCCC---CHHHHHHHHHHHhcCchH
Q 012893 349 VTHCGWNSTIEGIT----GGVPMVCRPVFADQALNQR-----IIETAWGIGVGVXGEKF---TKDETVNALKQVLSSEEG 416 (454)
Q Consensus 349 I~HgG~gsv~eal~----~GvP~i~~P~~~DQ~~nA~-----~v~~~~G~G~~~~~~~~---~~~~l~~av~~vl~~~~~ 416 (454)
|.--+...+.+.++ .++++-+ .|.+..+. .+.+- ++-+.+..+.. -+..|.+.|.+++. ++.
T Consensus 75 iaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~-~~~ 148 (202)
T PRK06718 75 IAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYD-ESY 148 (202)
T ss_pred EEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcc-hhH
Confidence 88877776666554 4555433 23322222 22222 33333322212 23566666666552 222
Q ss_pred HHHHHHHHHHHHHHHH
Q 012893 417 KRMRENVGALKKLAFK 432 (454)
Q Consensus 417 ~~~~~~a~~l~~~~~~ 432 (454)
..+-+.+.++++.+++
T Consensus 149 ~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 149 ESYIDFLYECRQKIKE 164 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666777777665
No 221
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=52.36 E-value=2.8e+02 Score=28.39 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=90.9
Q ss_pred EEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhh---hhhCCCceEeeccC-hHhhhcccCcceE
Q 012893 274 VIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFL---ERTKSYGKVVPWAP-QLKILEHSSVCVF 348 (454)
Q Consensus 274 ~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~---~~~~~nv~v~~~vp-~~~ll~~~~~~~~ 348 (454)
.++..-|....- ..+.+..++..+-..+.++++...++ ..+-+.+. ++.+.++.+.-+.+ ....+-++..+++
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd--~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~ 372 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGD--PELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVI 372 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCc--HHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEE
Confidence 444444554432 23555666666666677777766652 22333332 33456676664444 4444445555577
Q ss_pred Eec-----CCchhHHHHHHcCCCeecccccc------chhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHH
Q 012893 349 VTH-----CGWNSTIEGITGGVPMVCRPVFA------DQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGK 417 (454)
Q Consensus 349 I~H-----gG~gsv~eal~~GvP~i~~P~~~------DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~ 417 (454)
+-- ||. |=++|+++|++-|+.+..+ |-..++ .... |.|...... +++.+..++.+.+.
T Consensus 373 lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~~--~~~~l~~al~rA~~----- 441 (487)
T COG0297 373 LMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQT--NPDHLANALRRALV----- 441 (487)
T ss_pred EeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEecC--CHHHHHHHHHHHHH-----
Confidence 764 444 5678999999888888753 333333 4556 778777764 99999999998775
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012893 418 RMRENVGALKKLAFKAVE 435 (454)
Q Consensus 418 ~~~~~a~~l~~~~~~~~~ 435 (454)
-|+..-..++...+.++.
T Consensus 442 ~y~~~~~~w~~~~~~~m~ 459 (487)
T COG0297 442 LYRAPPLLWRKVQPNAMG 459 (487)
T ss_pred HhhCCHHHHHHHHHhhcc
Confidence 455544446666666654
No 222
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=51.60 E-value=15 Score=32.28 Aligned_cols=44 Identities=2% Similarity=-0.037 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
+..||++...|+.|=+.-...++++| +++| |+|.++.++...+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L--~k~G--~~V~vv~T~aA~~~ 47 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKL--VDEG--AEVTPIVSYTVQTT 47 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHH--HhCc--CEEEEEECHhHHHH
Confidence 34689888888777666689999999 9999 99999998765443
No 223
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=51.07 E-value=61 Score=27.44 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeec-cChHhhhcccCcceEEecCCchhHHH---HHHc
Q 012893 288 AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPW-APQLKILEHSSVCVFVTHCGWNSTIE---GITG 363 (454)
Q Consensus 288 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~-vp~~~ll~~~~~~~~I~HgG~gsv~e---al~~ 363 (454)
.......++..+.+-+++=+++.... .... ..+...+.++ -+-+.++...+-.+++--||.||.-| ++.+
T Consensus 41 GlM~a~a~ga~~~gg~viGVlp~~l~--~~~~----~~~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~ 114 (159)
T TIGR00725 41 GVMEAVSKGAREAGGLVVGILPDEDF--AGNP----YLTIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYAL 114 (159)
T ss_pred hHHHHHHHHHHHCCCeEEEECChhhc--cCCC----CceEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHc
Confidence 35566666666666665545443221 0000 0011122233 33444444433356677889997654 6889
Q ss_pred CCCeecccc
Q 012893 364 GVPMVCRPV 372 (454)
Q Consensus 364 GvP~i~~P~ 372 (454)
++|+++++.
T Consensus 115 ~kpv~~l~~ 123 (159)
T TIGR00725 115 GGPVVVLRG 123 (159)
T ss_pred CCCEEEEEC
Confidence 999998875
No 224
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.73 E-value=98 Score=26.47 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=50.8
Q ss_pred ccEEEecCcccCCHHHHHHHHhccCCeEEeccCCCCCCCCCCCCCCccchhccCCCCcEEEEeeCCCCCCCHHHHHHHHH
Q 012893 216 ATVVAINSYEELDPIVVETLKSRFRKFLNVGPSTLTSPPPVSDPHGCLPWLNEHENASVIYISFGSMITPPRAEVIALAE 295 (454)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~ 295 (454)
...+++-+.++.-......++..+|++..+|-..... ...+.+++.+.++..+. .+|+|++|+-. .+ .-+.+
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--~~~~~~~i~~~I~~~~p-div~vglG~Pk---QE--~~~~~ 120 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--DEEEEEAIINRINASGP-DIVFVGLGAPK---QE--RWIAR 120 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--ChhhHHHHHHHHHHcCC-CEEEEECCCCH---HH--HHHHH
Confidence 3455666666555555566777888888888554433 11223455666665443 49999998653 22 22333
Q ss_pred HHHhcCCCEEEEEcCC
Q 012893 296 ALEAIGFPFLWSFRGN 311 (454)
Q Consensus 296 ~~~~~~~~~i~~~~~~ 311 (454)
-....+..+++.+|+.
T Consensus 121 ~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 121 HRQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHHCCCCEEEEECch
Confidence 3334566777777753
No 225
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=50.47 E-value=14 Score=32.15 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccc
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLF 58 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~ 58 (454)
+.||++...++.|=+. ...+.+.| ++.| ++|.++.++...+.+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L--~~~g--~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQL--TKRG--YQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHH--HHCC--CEEEEEEChhHHHHcC
Confidence 3589998888888776 89999999 8999 9999999987666554
No 226
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.43 E-value=35 Score=32.03 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHc--
Q 012893 286 PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITG-- 363 (454)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~-- 363 (454)
+....+.+.+++.+.+.+.||.+.+.. .-.++.++++...+-+++. .+|=.+-..+++-+++.
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGG~-------------ga~rlL~~ld~~~~~~~pK--~~iGySDiTaL~~~l~~~~ 111 (282)
T cd07025 47 DEERAADLNAAFADPEIKAIWCARGGY-------------GANRLLPYLDYDLIRANPK--IFVGYSDITALHLALYAKT 111 (282)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCcC-------------CHHHhhhhCCHHHHhhCCe--EEEEecHHHHHHHHHHHhc
Confidence 567788899999999999999998864 2234566677777666776 88888888888887764
Q ss_pred CCCeeccccc
Q 012893 364 GVPMVCRPVF 373 (454)
Q Consensus 364 GvP~i~~P~~ 373 (454)
|++.+.-|+.
T Consensus 112 g~~t~hGp~~ 121 (282)
T cd07025 112 GLVTFHGPML 121 (282)
T ss_pred CceEEECccc
Confidence 7777766653
No 227
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=50.03 E-value=34 Score=31.31 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.2
Q ss_pred ceEEecCCchhHHHHHHc----CCCeecc
Q 012893 346 CVFVTHCGWNSTIEGITG----GVPMVCR 370 (454)
Q Consensus 346 ~~~I~HgG~gsv~eal~~----GvP~i~~ 370 (454)
+++|+-||=||+..|++. ++|++.+
T Consensus 27 Dlvi~iGGDGTlL~a~~~~~~~~~PvlGI 55 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRYMNSGKPVYGM 55 (246)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEE
Confidence 499999999999988765 6788766
No 228
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=49.74 E-value=1.4e+02 Score=27.37 Aligned_cols=32 Identities=25% Similarity=-0.089 Sum_probs=23.5
Q ss_pred CCCccEEEEcCc-------------hhhHHHHHHHcCCCeEEEeC
Q 012893 115 GLEISCLITDAF-------------LWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 115 ~~~pD~vi~d~~-------------~~~~~~~A~~lgiP~v~~~~ 146 (454)
..+||+||+..- ..++..-|...|||.+.++.
T Consensus 84 ~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 84 PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 347999987621 23555677889999999985
No 229
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=49.57 E-value=75 Score=30.25 Aligned_cols=34 Identities=9% Similarity=0.341 Sum_probs=27.8
Q ss_pred hhhcccCcceEEecCCchhHHHHHHcCCCeeccc
Q 012893 338 KILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRP 371 (454)
Q Consensus 338 ~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P 371 (454)
.++..-..|++|+.++..+..-|-..|+|.|.+-
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 3444455569999999999999999999999653
No 230
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=49.30 E-value=3.1e+02 Score=28.07 Aligned_cols=106 Identities=8% Similarity=-0.036 Sum_probs=67.2
Q ss_pred eEeeccChH---hhhcccCcceEEe---cCCchhHH-HHHHcCC----CeeccccccchhHHHHHHHHhhceeecCcCCC
Q 012893 329 KVVPWAPQL---KILEHSSVCVFVT---HCGWNSTI-EGITGGV----PMVCRPVFADQALNQRIIETAWGIGVGVXGEK 397 (454)
Q Consensus 329 ~v~~~vp~~---~ll~~~~~~~~I~---HgG~gsv~-eal~~Gv----P~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~ 397 (454)
++.+.+|+. +++..++ +++. .-|.|.+. |.++++. |+|+--+.+= .+.+ .-|+.+++
T Consensus 365 ~~~~~v~~~el~alYr~AD--V~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa-------a~~l-~~AllVNP-- 432 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMAD--VMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA-------AVEL-KGALLTNP-- 432 (487)
T ss_pred EEcCCCCHHHHHHHHHhCC--EEEECccccccCcchhhHHhhhcCCCCCEEEeccccc-------hhhc-CCCEEECC--
Confidence 455778865 4566666 4444 35888554 9999877 5555433321 1444 55677766
Q ss_pred CCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 398 FTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 398 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
.+.++++++|.+.|+.+.. +-++|.+++.+.+++ .+...=.+.|++.|.
T Consensus 433 ~d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVS 481 (487)
T ss_pred CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 5899999999999998632 345666666666555 444454556666554
No 231
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=48.82 E-value=14 Score=32.23 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhc-CCCcEEEEEEeCCCcCccccc
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAA-LEEEVTFSFFSTAQSNGSLFM 59 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~-~G~~h~V~~~~~~~~~~~~~~ 59 (454)
++||++...|+.| .+=...+.++| .+ .| |+|.++.++...+.+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L--~k~~g--~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVL--RDVGE--IETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHH--HhhcC--CeEEEEECHHHHHHHHH
Confidence 4589998888888 66699999999 88 59 99999999877666543
No 232
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=47.43 E-value=74 Score=27.09 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccC--------hHhhhcccCcceEEecCCch------h
Q 012893 291 IALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP--------QLKILEHSSVCVFVTHCGWN------S 356 (454)
Q Consensus 291 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp--------~~~ll~~~~~~~~I~HgG~g------s 356 (454)
+.+++.|++.|.+.++.+.+.....+-+.+.+. +.+.++.-.. .-.-...-...++++|.|-| +
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~--~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~ 82 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSGNLPLLDALEKS--PGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTG 82 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHT--TTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHH
T ss_pred HHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhh--cceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHH
Confidence 456677777777777777665433333333221 1233332111 11101112234888888744 7
Q ss_pred HHHHHHcCCCeecccc
Q 012893 357 TIEGITGGVPMVCRPV 372 (454)
Q Consensus 357 v~eal~~GvP~i~~P~ 372 (454)
+.+|...++|+|++.-
T Consensus 83 l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 83 LANAYADRIPVLVITG 98 (172)
T ss_dssp HHHHHHTT-EEEEEEE
T ss_pred HhhcccceeeEEEEec
Confidence 8889999999998764
No 233
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=47.32 E-value=24 Score=31.12 Aligned_cols=45 Identities=11% Similarity=-0.129 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccc
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSL 57 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~ 57 (454)
.+.|||+.+.++-.|-....-++..| ++.| ++|++++.....+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l--~~~G--~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTML--RANG--FDVIDLGRDVPIDTV 127 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHH--HhCC--cEEEECCCCCCHHHH
Confidence 45799999999999999999999999 9999 999999987655543
No 234
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=47.10 E-value=2.2e+02 Score=27.78 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCcc-cccchhhh-------h-hhCCCce--EeeccCh---HhhhcccCcceEEecC
Q 012893 287 RAEVIALAEALEAIGFPFLWSFRGNAE-EQLPKGFL-------E-RTKSYGK--VVPWAPQ---LKILEHSSVCVFVTHC 352 (454)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-------~-~~~~nv~--v~~~vp~---~~ll~~~~~~~~I~Hg 352 (454)
..-+..+++.+++.+..+.+.+..+.. ..+...+. . ...++.. +.++++| +.+|-.|++..| .
T Consensus 192 ~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfV--R- 268 (371)
T TIGR03837 192 NAALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFV--R- 268 (371)
T ss_pred ChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEe--e-
Confidence 345666777777666665555554321 11111110 0 0123443 4588885 689988885444 3
Q ss_pred CchhHHHHHHcCCCee--ccccc
Q 012893 353 GWNSTIEGITGGVPMV--CRPVF 373 (454)
Q Consensus 353 G~gsv~eal~~GvP~i--~~P~~ 373 (454)
|-=|+..|..+|+|+| +.|+.
T Consensus 269 GEDSFVRAqWAgkPfvWhIYPQe 291 (371)
T TIGR03837 269 GEDSFVRAQWAGKPFVWHIYPQE 291 (371)
T ss_pred chhHHHHHHHcCCCceeecccCc
Confidence 6689999999999999 77754
No 235
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=46.78 E-value=1.2e+02 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHH
Q 012893 13 VAVLAFPFGTHAAPLLDLVRRL 34 (454)
Q Consensus 13 il~~~~~~~GH~~p~l~la~~L 34 (454)
=+++..|+.||+.=++.|-+.|
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l 61 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEAL 61 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHH
Confidence 4566789999999999999999
No 236
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=46.71 E-value=22 Score=31.36 Aligned_cols=43 Identities=9% Similarity=-0.073 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
++.|||+.+.++-.|-....-++..| ++.| ++|++++.....+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l--~~~G--~~vi~lG~~~p~~ 123 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATML--EANG--FEVIDLGRDVPPE 123 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHH--HHCC--CEEEECCCCCCHH
Confidence 36799999999999999999999999 9999 9999888654444
No 237
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.39 E-value=83 Score=26.58 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=50.8
Q ss_pred hhHHHHHHcCCCeeccccc--cchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 012893 355 NSTIEGITGGVPMVCRPVF--ADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLA 430 (454)
Q Consensus 355 gsv~eal~~GvP~i~~P~~--~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~ 430 (454)
.|+.|-..+|.=.+. |.- -=+..|+.+.++. |.=-.+--...+.+.|.++..+-++|++..+++.++.++.+..
T Consensus 88 ~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~rF-gfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA 163 (176)
T COG3195 88 ESTSEQASAGLDRLS-PEEFARFTELNAAYVERF-GFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIA 163 (176)
T ss_pred hhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHhc-CCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 466677777765532 211 1256799999999 9765443223578999999988898876677888887776543
No 238
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=46.18 E-value=50 Score=34.42 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=54.8
Q ss_pred eCCCCCCCH-HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccC----------hHhhhcccCcce
Q 012893 279 FGSMITPPR-AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP----------QLKILEHSSVCV 347 (454)
Q Consensus 279 ~Gs~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp----------~~~ll~~~~~~~ 347 (454)
.||...... ...+.+++.|++.|.+.|....+.....+-+.+.+ .+++..+.-.. +..+-.++ ++
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~--gv 79 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKP--AV 79 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCC--eE
Confidence 455544333 44678899999999999998888754333333321 12343332111 11111233 48
Q ss_pred EEecCCch------hHHHHHHcCCCeeccc
Q 012893 348 FVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 348 ~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
+++|.|-| .+.+|...++|+|++-
T Consensus 80 ~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 80 CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 88888755 7899999999999884
No 239
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=45.37 E-value=33 Score=31.07 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=27.4
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 11 RHVAVLAFPFGTHAAPL------------LDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~------------l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
||||+...|+.=.+.|. .+||++| .++| |+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L--~~~G--~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETF--LAAG--HEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHH--HhCC--CEEEEEECc
Confidence 46777666666666554 3788899 8899 999998754
No 240
>PRK05595 replicative DNA helicase; Provisional
Probab=45.22 E-value=90 Score=31.46 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
=+++...|+.|=..=++.+|..++ .+.| +.|.|++.+-..+.
T Consensus 203 liviaarpg~GKT~~al~ia~~~a-~~~g--~~vl~fSlEms~~~ 244 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAA-LREG--KSVAIFSLEMSKEQ 244 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHH-HHcC--CcEEEEecCCCHHH
Confidence 456677789999999999998762 3569 99999998765543
No 241
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=44.95 E-value=1.9e+02 Score=24.28 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=68.5
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCC
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCG 353 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG 353 (454)
.|-|-.||.. +....+++...++..|..+-+.+-+-. ..|+.+.+. + .-+.+-.++++|.=.|
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH--R~p~~l~~~----------~---~~~~~~~~~viIa~AG 64 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH--RTPERLLEF----------V---KEYEARGADVIIAVAG 64 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT--TSHHHHHHH----------H---HHTTTTTESEEEEEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHH----------H---HHhccCCCEEEEEECC
Confidence 4555667665 678888999999988865544444321 123322211 0 0111122347777666
Q ss_pred ch----hHHHHHHcCCCeeccccccchhHHHHHHHHh----hceeecCc--CCCCCHHHHHHHHHHHhcCchHHHHHHHH
Q 012893 354 WN----STIEGITGGVPMVCRPVFADQALNQRIIETA----WGIGVGVX--GEKFTKDETVNALKQVLSSEEGKRMRENV 423 (454)
Q Consensus 354 ~g----sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~----~G~G~~~~--~~~~~~~~l~~av~~vl~~~~~~~~~~~a 423 (454)
.. ++..++ .-.|+|.+|....+....+-+... -|+++..- .+..++..++..|..+ .|+ +++++.
T Consensus 65 ~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d~---~l~~kl 139 (150)
T PF00731_consen 65 MSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KDP---ELREKL 139 (150)
T ss_dssp SS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T-H---HHHHHH
T ss_pred Ccccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CCH---HHHHHH
Confidence 43 334333 479999999877655433322222 14443321 1112333333333332 344 788888
Q ss_pred HHHHHHHHH
Q 012893 424 GALKKLAFK 432 (454)
Q Consensus 424 ~~l~~~~~~ 432 (454)
++.++++++
T Consensus 140 ~~~~~~~~~ 148 (150)
T PF00731_consen 140 RAYREKMKE 148 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887765
No 242
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=44.76 E-value=1.2e+02 Score=26.22 Aligned_cols=106 Identities=9% Similarity=-0.042 Sum_probs=51.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEE--EEEEeCCCcCccc-cccccccCCCCeeEEeCCCCCCCCCCCCCC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVT--FSFFSTAQSNGSL-FMEKDELRDCKIVPYNVESGLPEGFRFTGN 87 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~--V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 87 (454)
|||+|+.+++. .-+..+..+| .+.+ |+ |..+.+....... .... . .++....+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l--~~~~--~~~~iv~Vit~~~~~~~~~~~~--~--~~~~~~~~~------------ 57 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEAL--KARG--HNVEIVLVITNPDKPRGRSRAI--K--NGIPAQVAD------------ 57 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHH--HTTS--SEEEEEEEEESSTTTHHHHHHH--H--TTHHEEEHH------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHH--HhCC--CCceEEEEeccccccccccccc--c--CCCCEEecc------------
Confidence 68999877766 4455667788 8888 76 5555443333221 1110 0 022222211
Q ss_pred CcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCch-hhHHHHHHHcCCCeEEEeCc
Q 012893 88 PREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFL-WFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~-~~~~~~A~~lgiP~v~~~~~ 147 (454)
...........+.+..+++.. +||++|.-.+. .....+-+.....++-++++
T Consensus 58 ------~~~~~~~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 58 ------EKNFQPRSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ------GGGSSSHHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ------ccCCCchHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000000112223344455555 99998876433 33434557777778887654
No 243
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=44.67 E-value=58 Score=31.45 Aligned_cols=103 Identities=10% Similarity=0.028 Sum_probs=56.0
Q ss_pred cEEEEEcCCCccC-----HHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCC
Q 012893 11 RHVAVLAFPFGTH-----AAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFT 85 (454)
Q Consensus 11 ~~il~~~~~~~GH-----~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 85 (454)
.-|+|.|..+.|- ...+..|++.| .+.| ++|.+++++...+..++.. .. .+..... ..
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l--~~~~--~~vvl~Gg~~e~~~~~~i~--------~~--~~~~~~~---~~ 243 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQL--IDEG--YQVVLFGSAKDHEAGNEIL--------AA--LNTEQQA---WC 243 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHH--HHCC--CeEEEEeCHHhHHHHHHHH--------Hh--ccccccc---ce
Confidence 4466666432221 34578999999 7789 9999988876544333220 00 0000000 00
Q ss_pred CCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 86 GNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
.+.. ....+.+ +..+++ +.|++|+. ..+...+|..+|+|+|.++.
T Consensus 244 ~~l~---------g~~sL~e-l~ali~----~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 244 RNLA---------GETQLEQ-AVILIA----ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred eecc---------CCCCHHH-HHHHHH----hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 0000 0011222 233444 45999977 33566899999999999864
No 244
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=44.63 E-value=3.5e+02 Score=27.39 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEc-CCcccccchhhhh--hhCCCceEe-eccChHhhhcccC-cceEEecCCchhHHHH
Q 012893 286 PRAEVIALAEALEAIGFPFLWSFR-GNAEEQLPKGFLE--RTKSYGKVV-PWAPQLKILEHSS-VCVFVTHCGWNSTIEG 360 (454)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~~~~~~--~~~~nv~v~-~~vp~~~ll~~~~-~~~~I~HgG~gsv~ea 360 (454)
...++.++-.++.+-+..-||+-. ++-...-..+... ..+.+|.+. +-..--.+|.+-+ |-++-+|= -.||
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~m----gfea 240 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQM----GFEA 240 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEecccCChHHHHHhcceeEEeeccc----cHHH
Confidence 456677788888877777777633 2222111222221 123455554 4455556676665 11222333 3699
Q ss_pred HHcCCCeeccc
Q 012893 361 ITGGVPMVCRP 371 (454)
Q Consensus 361 l~~GvP~i~~P 371 (454)
|.+|+|++++.
T Consensus 241 ll~~~~~~~fg 251 (671)
T COG3563 241 LLCGKPLTTFG 251 (671)
T ss_pred HhcCCceeeec
Confidence 99999999874
No 245
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=44.56 E-value=54 Score=23.94 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEe
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFS 49 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~ 49 (454)
.-+|++..+...|....-.+|+.| .+.| +.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L--~~~G--~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFL--AEQG--YAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHH--HhCC--CEEEEEC
Confidence 678888899999999999999999 8899 8777543
No 246
>PLN02727 NAD kinase
Probab=44.50 E-value=40 Score=36.79 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=39.7
Q ss_pred cceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
++++|+=||=||++.|+.. ++|++.+ ..|..-=-.+...+++.++|.+++++
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~~~iPILGI-----------------NlGrLGFLTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRGAVPPVVSF-----------------NLGSLGFLTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEE-----------------eCCCccccccCCHHHHHHHHHHHHcC
Confidence 4599999999999999774 6788776 44433223346789999999999976
No 247
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=43.48 E-value=3.4e+02 Score=26.92 Aligned_cols=136 Identities=13% Similarity=0.175 Sum_probs=79.0
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCC-ceEeec-------cChHhhhccc
Q 012893 272 ASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSY-GKVVPW-------APQLKILEHS 343 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~n-v~v~~~-------vp~~~ll~~~ 343 (454)
+.+++.-.||... -....+++.+.+.|+.+-++........+.....+...++ |+..-| +.|-.+...+
T Consensus 7 k~IllgvTGsiaa---~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~V~~~~~~~~~~~~~~hi~l~~~a 83 (399)
T PRK05579 7 KRIVLGVSGGIAA---YKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSGNPVSTDLWDPAAEAAMGHIELAKWA 83 (399)
T ss_pred CeEEEEEeCHHHH---HHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHHhhCCceEccccccccCCCcchhhccccc
Confidence 3466666666642 2345577777778887777766554322222222233333 332112 2355555556
Q ss_pred CcceEEecCCchhHHH-------------HHHcCCCeeccccc----cc---hhHHHHHHHHhhceeecCc---------
Q 012893 344 SVCVFVTHCGWNSTIE-------------GITGGVPMVCRPVF----AD---QALNQRIIETAWGIGVGVX--------- 394 (454)
Q Consensus 344 ~~~~~I~HgG~gsv~e-------------al~~GvP~i~~P~~----~D---Q~~nA~~v~~~~G~G~~~~--------- 394 (454)
+ .++|.-+-+||+.- ++.+++|++++|-. .+ -..|...+.+. |+-+.-+
T Consensus 84 D-~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~ii~P~~g~la~~~ 161 (399)
T PRK05579 84 D-LVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSR-GVEIIGPASGRLACGD 161 (399)
T ss_pred C-EEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHC-CCEEECCCCccccCCC
Confidence 6 47788887776543 36679999999942 23 34566777776 7655432
Q ss_pred ---CCCCCHHHHHHHHHHHhc
Q 012893 395 ---GEKFTKDETVNALKQVLS 412 (454)
Q Consensus 395 ---~~~~~~~~l~~av~~vl~ 412 (454)
..-..+++|...+.+.+.
T Consensus 162 ~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 162 VGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred cCCCCCCCHHHHHHHHHHHhh
Confidence 112467888888877764
No 248
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=42.79 E-value=66 Score=30.94 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=59.0
Q ss_pred CcEEEEEcCCCcc-----CHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCC
Q 012893 10 RRHVAVLAFPFGT-----HAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRF 84 (454)
Q Consensus 10 ~~~il~~~~~~~G-----H~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 84 (454)
+..|+|.|..+.| -..-+..|++.| .++| .+|.+++++...+..++.. .++.....
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l--~~~~--~~Vvl~g~~~e~e~~~~i~-----~~~~~~~~---------- 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELL--IAKG--YQVVLFGGPDEEERAEEIA-----KGLPNAVI---------- 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHH--HHCC--CEEEEecChHHHHHHHHHH-----HhcCCccc----------
Confidence 4677777773332 355788999999 9999 9999999884444443330 01100000
Q ss_pred CCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 85 TGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
+ .....+.+ +..++. ..|++|+. ..+...+|..+|.|+|.+..
T Consensus 236 ----------l--~~k~sL~e-~~~li~----~a~l~I~~--DSg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 236 ----------L--AGKTSLEE-LAALIA----GADLVIGN--DSGPMHLAAALGTPTIALYG 278 (334)
T ss_pred ----------c--CCCCCHHH-HHHHHh----cCCEEEcc--CChHHHHHHHcCCCEEEEEC
Confidence 0 00011222 122333 56888876 33456899999999999874
No 249
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=42.74 E-value=1.7e+02 Score=25.75 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
|+||+++..+..+-+. +|.+++.....+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~--~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLP--AEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCC--cEEEEEEec
Confidence 4799999887754444 555667222234 677765443
No 250
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=42.42 E-value=12 Score=32.68 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=27.3
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 11 RHVAVLAFPFGTHAAPL------------LDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~------------l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
.|||+...|+.=.+.|. ..||+++ ..+| ++|+++.++.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~--~~~G--a~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEA--ARRG--AEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHH--HHTT---EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHH--HHCC--CEEEEEecCc
Confidence 57777777777666654 4899999 8899 9999999984
No 251
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=42.40 E-value=2.3e+02 Score=24.69 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=35.5
Q ss_pred eEEecCCchhHHHH--HHcCCCeeccccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIEG--ITGGVPMVCRPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~ea--l~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++..+|+|.+... ..++....... .+-+..+...+.. |+- ..++ +.++|.+++++.++
T Consensus 103 vV~NN~~yg~~~~~q~~~~~~~~~~~~--~~~~d~~~lA~a~-G~~~~~v~----~~~el~~al~~a~~ 164 (196)
T cd02013 103 VVFRNRQWGAEKKNQVDFYNNRFVGTE--LESESFAKIAEAC-GAKGITVD----KPEDVGPALQKAIA 164 (196)
T ss_pred EEEECchhHHHHHHHHHHcCCCccccc--CCCCCHHHHHHHC-CCEEEEEC----CHHHHHHHHHHHHh
Confidence 67799999987642 22332222111 1125667777777 763 3333 68889888888774
No 252
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=42.40 E-value=3.3e+02 Score=26.42 Aligned_cols=116 Identities=18% Similarity=0.127 Sum_probs=62.7
Q ss_pred hCCCceEeeccChHh---hhcccCcceEEecCCch-----hHHHHHHcCCCeeccccccchhHHHHHHHHhhceeecCcC
Q 012893 324 TKSYGKVVPWAPQLK---ILEHSSVCVFVTHCGWN-----STIEGITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXG 395 (454)
Q Consensus 324 ~~~nv~v~~~vp~~~---ll~~~~~~~~I~HgG~g-----sv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~ 395 (454)
.+++|...-.+|+.. +|..|. .-| |+=|| ++.|.+++|.=+|+---.+ |.- +.| .- =.|-....
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~--iGv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgG--P~l-DIV-~~-~~G~~tGF 406 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKAT--IGV-HTMWNEHFGISVVEYMAAGLIPIVHNSGG--PLL-DIV-TP-WDGETTGF 406 (465)
T ss_pred CccceEEEecCCHHHHHHHhccce--eeh-hhhhhhhcchhHHHHHhcCceEEEeCCCC--Cce-eee-ec-cCCcccee
Confidence 456787777888754 454443 222 33333 7889999986444321110 000 000 00 01111111
Q ss_pred CCCCHHHHHHHHHHHhcCc-h-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 396 EKFTKDETVNALKQVLSSE-E-GKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 396 ~~~~~~~l~~av~~vl~~~-~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
-..+.++-++++.++...+ + ...+|++|++-.+++.+ ....+.+...+..++
T Consensus 407 la~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE-----~~F~kd~~~~i~kll 460 (465)
T KOG1387|consen 407 LAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE-----LKFDKDWENPICKLL 460 (465)
T ss_pred ecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH-----HHHHHhHhHHHHHhh
Confidence 2247788889998888753 2 45788999888888877 334444444444443
No 253
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=74 Score=31.11 Aligned_cols=42 Identities=5% Similarity=-0.047 Sum_probs=35.6
Q ss_pred CcEEEEEcC-CCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 10 RRHVAVLAF-PFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 10 ~~~il~~~~-~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
++.|+++.. -+-|-+.-+-.+|..+ +++| +.+-++|...|+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~--kkkG--~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYY--KKKG--YKVALVCADTFRA 142 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHH--HhcC--CceeEEeeccccc
Confidence 455555554 5999999999999999 9999 9999999988876
No 254
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=42.09 E-value=52 Score=31.28 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHH--c
Q 012893 286 PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGIT--G 363 (454)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~--~ 363 (454)
+......+.+++.+.+.+.||.+.+.. .-.++.++++...+-.++. .||=.+-..+++-+++ .
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rGG~-------------g~~rlL~~lD~~~i~~~PK--~fiGySDiTaL~~al~~~~ 115 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIGGD-------------DSNELLPYLDYELIKKNPK--IFIGYSDITALHLAIYKKT 115 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccc-------------CHhhhhhhcCHHHHhhCCC--EEEeccHHHHHHHHHHHhc
Confidence 456778899999999999999988864 2234556667666666666 7777777777777774 3
Q ss_pred CCCeeccccc
Q 012893 364 GVPMVCRPVF 373 (454)
Q Consensus 364 GvP~i~~P~~ 373 (454)
|.+.+.-|+.
T Consensus 116 g~~t~hGp~~ 125 (308)
T cd07062 116 GLVTYYGPNL 125 (308)
T ss_pred CCeEEECccc
Confidence 6666655653
No 255
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=42.08 E-value=95 Score=23.11 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHHHhchHHHHHH
Q 012893 27 LLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFLKATPGNFVRA 106 (454)
Q Consensus 27 ~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (454)
++.+++.| .+.| ++|. + ++...+.+++. |++...+-.....+ . ..
T Consensus 2 ~~~~~~~l--~~lG--~~i~-A-T~gTa~~L~~~-------Gi~~~~~~~ki~~~---------~---------~~---- 46 (90)
T smart00851 2 LVELAKRL--AELG--FELV-A-TGGTAKFLREA-------GLPVKTLHPKVHGG---------I---------LA---- 46 (90)
T ss_pred HHHHHHHH--HHCC--CEEE-E-ccHHHHHHHHC-------CCcceeccCCCCCC---------C---------HH----
Confidence 46889999 8899 8883 4 43444556555 66543211000000 0 01
Q ss_pred HHHHHHhcCCCccEEEEcCc---------hhhHHHHHHHcCCCeEE
Q 012893 107 LEKAVAKTGLEISCLITDAF---------LWFAAEMAEEMRVPWIA 143 (454)
Q Consensus 107 ~~~~~~~~~~~pD~vi~d~~---------~~~~~~~A~~lgiP~v~ 143 (454)
+.+.++. .+.|+||.... .+....+|...|||+++
T Consensus 47 i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 47 ILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred HHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 2223332 38899887532 23455689999999863
No 256
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=41.89 E-value=23 Score=32.27 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=22.2
Q ss_pred CccEEEEcCch-----hhHHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDAFL-----WFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~-----~~~~~~A~~lgiP~v~~~ 145 (454)
+.|+||+--.. ..=..+|..+|||+|.+-
T Consensus 196 ~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 196 RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 89999987432 223458999999999984
No 257
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.07 E-value=2.6e+02 Score=24.76 Aligned_cols=145 Identities=11% Similarity=0.072 Sum_probs=72.2
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhh-CCCceEeeccChHhhhcccCcceEE
Q 012893 271 NASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERT-KSYGKVVPWAPQLKILEHSSVCVFV 349 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~nv~v~~~vp~~~ll~~~~~~~~I 349 (454)
+++++.|+.|.++ ..-+..+.+.|..+.++.+... +.+.+-. ..++....--.....+..++ ++|
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~-----~~l~~l~~~~~i~~~~~~~~~~dl~~~~--lVi 74 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE-----SELTLLAEQGGITWLARCFDADILEGAF--LVI 74 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC-----HHHHHHHHcCCEEEEeCCCCHHHhCCcE--EEE
Confidence 3467877777554 2345566667887776654321 2221111 13565543222344565555 899
Q ss_pred ecCCchhHHH-----HHHcCCCeecc--ccccchhHHHHHHHHhhceeecCcCCC---CCHHHHHHHHHHHhcCchHHHH
Q 012893 350 THCGWNSTIE-----GITGGVPMVCR--PVFADQALNQRIIETAWGIGVGVXGEK---FTKDETVNALKQVLSSEEGKRM 419 (454)
Q Consensus 350 ~HgG~gsv~e-----al~~GvP~i~~--P~~~DQ~~nA~~v~~~~G~G~~~~~~~---~~~~~l~~av~~vl~~~~~~~~ 419 (454)
..-|...+.+ |-..|+|+-++ |...| +..-..+.+- ++-+.+..+. .-+..|.+.|.+++.+.. ..+
T Consensus 75 ~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~~~-~~~ 151 (205)
T TIGR01470 75 AATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPPSL-GDL 151 (205)
T ss_pred ECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcchhH-HHH
Confidence 8888774443 44568888332 22222 1111122222 2333332221 233667777777775321 245
Q ss_pred HHHHHHHHHHHHH
Q 012893 420 RENVGALKKLAFK 432 (454)
Q Consensus 420 ~~~a~~l~~~~~~ 432 (454)
-+...++++.+++
T Consensus 152 ~~~~~~~R~~~k~ 164 (205)
T TIGR01470 152 ATLAATWRDAVKK 164 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 5555666666554
No 258
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=40.84 E-value=13 Score=37.50 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCC--CEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCC--c-hhHHHHH
Q 012893 287 RAEVIALAEALEAIGF--PFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCG--W-NSTIEGI 361 (454)
Q Consensus 287 ~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG--~-gsv~eal 361 (454)
...++++.+-+++.+. +++|.+...... .+ ..++..+. +++++-.+ + -++.||+
T Consensus 328 ~~~~~el~~lie~~~l~g~~v~~~~s~~~~-----------~~---------yrl~adt~-~v~~qPa~E~FGiv~IEAM 386 (495)
T KOG0853|consen 328 VEYLKELLSLIEEYDLLGQFVWFLPSTTRV-----------AK---------YRLAADTK-GVLYQPANEHFGIVPIEAM 386 (495)
T ss_pred HHHHHHHHHHHHHhCccCceEEEecCCchH-----------HH---------HHHHHhcc-eEEecCCCCCccceeHHHH
Confidence 4556677777777643 667765543210 00 11222222 23444333 1 2789999
Q ss_pred HcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 362 TGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 362 ~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
++|.|++..=. .--+..|+.. --|.-++++.-....+++++.++.+|+
T Consensus 387 a~glPvvAt~~----GGP~EiV~~~-~tG~l~dp~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 387 ACGLPVVATNN----GGPAEIVVHG-VTGLLIDPGQEAVAELADALLKLRRDP 434 (495)
T ss_pred hcCCCEEEecC----CCceEEEEcC-CcceeeCCchHHHHHHHHHHHHHhcCH
Confidence 99999987632 2223333333 445555553223347999999999997
No 259
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.81 E-value=38 Score=27.11 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
|||+.+.++-.|..-..-++.-| ++.| ++|.+.+.....+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l--~~~G--~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARAL--RDAG--FEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHH--HHCC--CEEEECCCCCCHH
Confidence 68999999999999999999999 9999 9999999854443
No 260
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=40.70 E-value=2e+02 Score=24.85 Aligned_cols=101 Identities=15% Similarity=0.026 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCCEEEEEcCCcccccc-------hhhhhhhCCCceE-eeccChHhhh-cccCcceEEecCCchhHH---
Q 012893 291 IALAEALEAIGFPFLWSFRGNAEEQLP-------KGFLERTKSYGKV-VPWAPQLKIL-EHSSVCVFVTHCGWNSTI--- 358 (454)
Q Consensus 291 ~~~~~~~~~~~~~~i~~~~~~~~~~l~-------~~~~~~~~~nv~v-~~~vp~~~ll-~~~~~~~~I~HgG~gsv~--- 358 (454)
..+++.+.+.|+.+-++........+. ..+.+ ...++.- .++..+.... ..++ .++|.-+-.||+.
T Consensus 16 ~~lir~L~~~g~~V~vv~T~~A~~fv~~e~~~~~~~l~~-~~~~~~~~~~~~~~i~~~s~~aD-~~vIaPATantiAkiA 93 (181)
T TIGR00421 16 IRLLEVLKEAGVEVHLVISDWAKETIKYETDIDPGEVEE-LATKYYDADDFAAPIASGSFPFD-GMVVVPCSMKTLSAIA 93 (181)
T ss_pred HHHHHHHHHCCCEEEEEECccHHHHHHHHHCCCHHHHHH-HhhhhCCCcccccccccCCchhC-EEEEecCCHhHHHHHH
Confidence 457777777787776666654322221 11111 1011110 1222221111 1233 4677777766543
Q ss_pred -------------HHHHcCCCeeccccc----cchhHHHHHHHHhhceeecCc
Q 012893 359 -------------EGITGGVPMVCRPVF----ADQALNQRIIETAWGIGVGVX 394 (454)
Q Consensus 359 -------------eal~~GvP~i~~P~~----~DQ~~nA~~v~~~~G~G~~~~ 394 (454)
.++..++|++++|.. .-+..|...+.+. |+-+.-+
T Consensus 94 ~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~-G~~ii~P 145 (181)
T TIGR00421 94 NGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRM-GAIILPP 145 (181)
T ss_pred cccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHC-CCEEECC
Confidence 468899999999952 2346778888888 8876543
No 261
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=40.27 E-value=93 Score=27.06 Aligned_cols=98 Identities=11% Similarity=0.014 Sum_probs=45.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcC--CCcEEEEEEeCCC-cCccccccccccC-CCCeeEEeCCCCCCCCCCCCCC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAAL--EEEVTFSFFSTAQ-SNGSLFMEKDELR-DCKIVPYNVESGLPEGFRFTGN 87 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~--G~~h~V~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 87 (454)
+++-+-..+-|-+.-..+|+++| +++ | ++|.+-++.. ..+.+.+. ++ .....+.|+. +
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l--~~~~p~--~~illT~~T~tg~~~~~~~---~~~~v~~~~~P~D--~--------- 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRL--RKQRPD--LRILLTTTTPTGREMARKL---LPDRVDVQYLPLD--F--------- 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHH--TT---T--S-EEEEES-CCHHHHHHGG----GGG-SEEE---S--S---------
T ss_pred CcEEEEECCHHHHHHHHHHHHHH--HHhCCC--CeEEEEecCCchHHHHHHh---CCCCeEEEEeCcc--C---------
Confidence 55666677899999999999999 665 8 8888877632 22333322 11 0123332221 1
Q ss_pred CcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHH--HHHHcCCCeEEEe
Q 012893 88 PREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAE--MAEEMRVPWIAYW 145 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~--~A~~lgiP~v~~~ 145 (454)
. ..++..++.+ +||++|.--...|..+ .|++.|||++.+.
T Consensus 84 ----~--------~~~~rfl~~~------~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 84 ----P--------WAVRRFLDHW------RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ----H--------HHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ----H--------HHHHHHHHHh------CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 1 1222334444 9998775545544444 5678899999985
No 262
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.44 E-value=2.6e+02 Score=29.27 Aligned_cols=102 Identities=9% Similarity=-0.040 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHH--HHcCCCee
Q 012893 291 IALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEG--ITGGVPMV 368 (454)
Q Consensus 291 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ea--l~~GvP~i 368 (454)
..+-..++..+.++|..+|.....--..++...+.-++ +-+-+++..||+|.+..- ..++-+..
T Consensus 429 aaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~l--------------pv~~vV~NN~~y~~i~~~q~~~~~~~~~ 494 (572)
T PRK08979 429 AAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDI--------------PVKIINLNNRFLGMVKQWQDMIYQGRHS 494 (572)
T ss_pred HHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCC--------------CeEEEEEeCCccHHHHHHHHHHhCCccc
Confidence 34555666677788888776542111111111111111 112278999999987533 32333221
Q ss_pred ccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 369 CRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 369 ~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
... ....+..+...+.. |+ |.++. +.++|..++.+.++
T Consensus 495 ~~~-~~~~~d~~~~A~a~-G~~~~~v~----~~~eL~~al~~a~~ 533 (572)
T PRK08979 495 HSY-MDSVPDFAKIAEAY-GHVGIRIS----DPDELESGLEKALA 533 (572)
T ss_pred ccC-CCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 111 11135677878877 76 34333 68899999998874
No 263
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=39.37 E-value=3.1e+02 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=23.2
Q ss_pred CCccEEEEcCc-------------hhhHHHHHHHcCCCeEEEeC
Q 012893 116 LEISCLITDAF-------------LWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 116 ~~pD~vi~d~~-------------~~~~~~~A~~lgiP~v~~~~ 146 (454)
.+||+||+..- ..++..-|...|||.+.++.
T Consensus 81 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 81 PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 48999998621 23555677889999999985
No 264
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=39.32 E-value=1.5e+02 Score=25.57 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=26.7
Q ss_pred eEeeccC-hHhhhcccCcceEEecCCchhHHHHHH---------cCCCeeccc
Q 012893 329 KVVPWAP-QLKILEHSSVCVFVTHCGWNSTIEGIT---------GGVPMVCRP 371 (454)
Q Consensus 329 ~v~~~vp-~~~ll~~~~~~~~I~HgG~gsv~eal~---------~GvP~i~~P 371 (454)
.+++... ...+|-..+-.+++--||.||.-|.+. +.+|++++=
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 3444333 233443333357777899999988743 589998763
No 265
>PRK06321 replicative DNA helicase; Provisional
Probab=38.68 E-value=2e+02 Score=29.34 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
=|++...|+.|=..-.+.+|...+ .+.| ..|.|++-+-..+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a-~~~g--~~v~~fSLEMs~~q 269 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFC-FQNR--LPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHH-HhcC--CeEEEEeccCCHHH
Confidence 456777789999999999999883 2468 89999998765543
No 266
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=38.61 E-value=3e+02 Score=28.78 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHH-HHHHcCCCeecc
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTI-EGITGGVPMVCR 370 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~-eal~~GvP~i~~ 370 (454)
.+-..++..+.++|..+|.....--..++...+..|. +=+-+++..||+|.+. +....|.+-...
T Consensus 417 AiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~l--------------pv~~vV~NN~~~g~i~~~q~~~~~~~~~~ 482 (578)
T PRK06546 417 AIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDL--------------PVKVVVFNNSTLGMVKLEMLVDGLPDFGT 482 (578)
T ss_pred HHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCC--------------CeEEEEEECCccccHHHHHHhcCCCcccc
Confidence 4445556667788888886542111111111110111 1123889999999874 222333332111
Q ss_pred ccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 371 PVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 371 P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
.......+...+.. |+ |..++ +.++|.+++++.++
T Consensus 483 --~~~~~df~~lA~a~-G~~~~~v~----~~~el~~al~~a~~ 518 (578)
T PRK06546 483 --DHPPVDYAAIAAAL-GIHAVRVE----DPKDVRGALREAFA 518 (578)
T ss_pred --cCCCCCHHHHHHHC-CCeeEEeC----CHHHHHHHHHHHHh
Confidence 12346677777777 86 34343 78999999998764
No 267
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=38.53 E-value=47 Score=27.61 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=21.4
Q ss_pred ceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 346 CVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 346 ~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
.++++|+|-| .+.+|...++|+|++.
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 3888887754 7788999999999885
No 268
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=37.85 E-value=19 Score=27.31 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHHHhchHHHHHH
Q 012893 27 LLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFLKATPGNFVRA 106 (454)
Q Consensus 27 ~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (454)
++++|+.| .+.| |++. +++.-.+.+++. |++...+-+....... ..... .
T Consensus 2 ~~~~a~~l--~~lG--~~i~--AT~gTa~~L~~~-------Gi~~~~v~~~~~~~~~----~~g~~-------------~ 51 (95)
T PF02142_consen 2 IVPLAKRL--AELG--FEIY--ATEGTAKFLKEH-------GIEVTEVVNKIGEGES----PDGRV-------------Q 51 (95)
T ss_dssp HHHHHHHH--HHTT--SEEE--EEHHHHHHHHHT-------T--EEECCEEHSTG-G----GTHCH-------------H
T ss_pred HHHHHHHH--HHCC--CEEE--EChHHHHHHHHc-------CCCceeeeeecccCcc----CCchh-------------H
Confidence 57899999 8899 7764 454555667666 7886665311111100 00000 2
Q ss_pred HHHHHHhcCCCccEEEEcCch---------hhHHHHHHHcCCCeEE
Q 012893 107 LEKAVAKTGLEISCLITDAFL---------WFAAEMAEEMRVPWIA 143 (454)
Q Consensus 107 ~~~~~~~~~~~pD~vi~d~~~---------~~~~~~A~~lgiP~v~ 143 (454)
+.++++. .+.|+||..... +.-..+|...+||+++
T Consensus 52 i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 52 IMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 2334443 389999877432 2234588999999874
No 269
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=37.28 E-value=76 Score=26.87 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.8
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEc
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFR 309 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 309 (454)
.+|+++||....+...++..+.++.+.+.--++..+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S 38 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVS 38 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 699999999887778889999999887653344433
No 270
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=37.26 E-value=1.9e+02 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.0
Q ss_pred cceEEecCCch------hHHHHHHcCCCeecc
Q 012893 345 VCVFVTHCGWN------STIEGITGGVPMVCR 370 (454)
Q Consensus 345 ~~~~I~HgG~g------sv~eal~~GvP~i~~ 370 (454)
.+++++|.|-| .+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 34889998855 778999999999988
No 271
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.25 E-value=69 Score=29.60 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=21.8
Q ss_pred cceEEecCCchhHHHHHH----cCCCeecc
Q 012893 345 VCVFVTHCGWNSTIEGIT----GGVPMVCR 370 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~----~GvP~i~~ 370 (454)
++++|+=||=||++.|++ .++|++.+
T Consensus 34 ~D~vi~iGGDGT~L~a~~~~~~~~iPilGI 63 (259)
T PRK00561 34 ADYLFVLGGDGFFVSTAANYNCAGCKVVGI 63 (259)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCcEEEE
Confidence 349999999999999875 46788877
No 272
>PRK14099 glycogen synthase; Provisional
Probab=36.95 E-value=44 Score=34.12 Aligned_cols=39 Identities=21% Similarity=0.022 Sum_probs=29.3
Q ss_pred CCcEEEEEcCC------CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 9 QRRHVAVLAFP------FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 9 ~~~~il~~~~~------~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
+.|||||++.. +.|=-.-+-+|.++| +++| |+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l--~~~g--~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAAL--KAHG--VEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHH--HHCC--CcEEEEeCC
Confidence 56899998752 334444456788999 8999 999999984
No 273
>PRK04940 hypothetical protein; Provisional
Probab=36.27 E-value=1.1e+02 Score=26.60 Aligned_cols=31 Identities=6% Similarity=0.044 Sum_probs=24.9
Q ss_pred CccEEEEcCch-hhHHHHHHHcCCCeEEEeCc
Q 012893 117 EISCLITDAFL-WFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 117 ~pD~vi~d~~~-~~~~~~A~~lgiP~v~~~~~ 147 (454)
+++++|...+. ++|.-+|+++|+|+|.+-++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46788877654 68889999999999998543
No 274
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=36.12 E-value=1.7e+02 Score=29.13 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=28.5
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHhhhcCCCcEEEEEE-eCCCcC
Q 012893 12 HVAVLAF-PFGTHAAPLLDLVRRLSEAALEEEVTFSFF-STAQSN 54 (454)
Q Consensus 12 ~il~~~~-~~~GH~~p~l~la~~L~~~~~G~~h~V~~~-~~~~~~ 54 (454)
+|++... -+.|-+.=.+.|.++| +++| ++|.=+ ++|++.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL--~~rg--~~VqpfKvGPDYI 42 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRAL--RRRG--LKVQPFKVGPDYI 42 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHH--HhcC--CcccccccCCCcc
Confidence 4555544 4889999999999999 9999 888532 344444
No 275
>PRK06270 homoserine dehydrogenase; Provisional
Probab=35.80 E-value=1.8e+02 Score=28.18 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=37.9
Q ss_pred ChHhhhcccCcceEEe------cCC---chhHHHHHHcCCCeec---cccccchhHHHHHHHHhhceeecC
Q 012893 335 PQLKILEHSSVCVFVT------HCG---WNSTIEGITGGVPMVC---RPVFADQALNQRIIETAWGIGVGV 393 (454)
Q Consensus 335 p~~~ll~~~~~~~~I~------HgG---~gsv~eal~~GvP~i~---~P~~~DQ~~nA~~v~~~~G~G~~~ 393 (454)
+...++..+++++||- |+| ..-+.+||.+|+++|+ -|....-..-....++. |+....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 5567787666777776 443 4466899999999998 47654333344445555 665543
No 276
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=35.53 E-value=1.1e+02 Score=26.63 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCccEEEEcCch-hhHHHHHHHcCCCeEEEeCc
Q 012893 107 LEKAVAKTGLEISCLITDAFL-WFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 107 ~~~~~~~~~~~pD~vi~d~~~-~~~~~~A~~lgiP~v~~~~~ 147 (454)
+.+++++......++|.+.+. +++..+|+.+|+|+|.+-++
T Consensus 49 l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 49 LEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 444555542222467766544 57778999999999988654
No 277
>PRK14098 glycogen synthase; Provisional
Probab=35.33 E-value=50 Score=33.75 Aligned_cols=39 Identities=8% Similarity=-0.023 Sum_probs=29.5
Q ss_pred CCcEEEEEcCC------CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 9 QRRHVAVLAFP------FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 9 ~~~~il~~~~~------~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
++|||||++.. +.|=-.-+-+|.++| +++| |+|.++.+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al--~~~g--~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQAL--EEEG--FEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHH--HHCC--CeEEEEcCC
Confidence 45999998752 334444456788999 8999 999999984
No 278
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=34.98 E-value=44 Score=29.15 Aligned_cols=39 Identities=3% Similarity=-0.037 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN 54 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~ 54 (454)
||++...|+.|=+.-.+.+.++| .+.| ++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L--~~~g--~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKL--VDEG--AEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHH--HhCc--CEEEEEEchhHH
Confidence 78888888888888888999999 9999 999999886543
No 279
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=1.2e+02 Score=25.58 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=25.4
Q ss_pred CCCccEEEEcCc----------hhhHHHHHHHcCCCeEEEeCch
Q 012893 115 GLEISCLITDAF----------LWFAAEMAEEMRVPWIAYWTAG 148 (454)
Q Consensus 115 ~~~pD~vi~d~~----------~~~~~~~A~~lgiP~v~~~~~~ 148 (454)
.++||+|++..- .--+..+|+++|+|+.-.+.+.
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 689999998632 1245578999999999876543
No 280
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.40 E-value=2.1e+02 Score=28.75 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=22.2
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
+||++|.... ...+|+++|||++.+.
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 8999999864 4689999999999875
No 281
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=34.35 E-value=1.4e+02 Score=28.60 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=22.9
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
+.|++|+. ..+...+|..+|+|+|.+..
T Consensus 260 ~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 45999987 44566999999999999864
No 282
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=34.13 E-value=63 Score=31.40 Aligned_cols=103 Identities=11% Similarity=-0.023 Sum_probs=51.3
Q ss_pred EcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHH
Q 012893 16 LAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHF 95 (454)
Q Consensus 16 ~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (454)
+..++.|..+-...++++. .+.| +.|.++......+...-. .+-++..|... .+.+..
T Consensus 16 LG~GGGG~p~~~~~~~~~~--l~~~--~~v~lv~~del~dd~~v~-------~v~~~GsP~v~----------~E~lp~- 73 (353)
T PF06032_consen 16 LGSGGGGDPYIGRLMAEQA--LREG--GPVRLVDPDELPDDDLVV-------PVGMMGSPTVS----------VEKLPS- 73 (353)
T ss_dssp TTTT-SS-HHHHHHHHTT---SBTT--S-EEEE-GGG--SSE-EE-------EEEEEE-HHHT----------T-SS-H-
T ss_pred EEEcCCccHHHHHHHHHHH--HhCC--CCeEEEEHhHcCCCCcEe-------EEEEeCCChHH----------hccCCC-
Confidence 3467888888888888888 7888 899999886543211000 12223322100 011100
Q ss_pred HHhchHHHHHHHHHHHHhcCCCccEEEEcCc----hhhHHHHHHHcCCCeEEE
Q 012893 96 LKATPGNFVRALEKAVAKTGLEISCLITDAF----LWFAAEMAEEMRVPWIAY 144 (454)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~----~~~~~~~A~~lgiP~v~~ 144 (454)
.......++.+.+.++.++|.|++--. ...+..+|..+|+|+|=-
T Consensus 74 ----g~e~~~a~~~le~~~g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 74 ----GDEALRAVEALEKYLGRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp ----HHHHHHHHHHHHHHTT--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred ----chHHHHHHHHHHHhhCCCccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 012233344444444668999998633 356667889999998853
No 283
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.08 E-value=3.6e+02 Score=28.38 Aligned_cols=120 Identities=8% Similarity=-0.021 Sum_probs=61.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecC
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHC 352 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~Hg 352 (454)
|.-|++.|+.+.+--..=..+-.+++..+.++|..+|.....--..++..-..-++- =+-+|+..|
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp--------------vi~vV~NN~ 485 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLP--------------VKIFILNNQ 485 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCC--------------eEEEEEeCC
Confidence 344554333322222233345556666777888887765421111111111111111 122789999
Q ss_pred CchhHHHH--HHcCCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 353 GWNSTIEG--ITGGVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 353 G~gsv~ea--l~~GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
|+|.+... +.+|.+.-.. .....+..+...+.. |+ |.+++ +.++|.+++++.++
T Consensus 486 ~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~lA~a~-G~~~~~v~----~~~el~~al~~a~~ 542 (595)
T PRK09107 486 YMGMVRQWQQLLHGNRLSHS-YTEAMPDFVKLAEAY-GAVGIRCE----KPGDLDDAIQEMID 542 (595)
T ss_pred ccHHHHHHHHHHhCCccccc-cCCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 99987633 3344321111 111235677777777 64 33333 78899999998864
No 284
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=34.04 E-value=49 Score=29.98 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCc-cC---HHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC--ccccccccccCCCCee--EEeCCCCCCC
Q 012893 9 QRRHVAVLAFPFG-TH---AAPLLDLVRRLSEAALEEEVTFSFFSTAQSN--GSLFMEKDELRDCKIV--PYNVESGLPE 80 (454)
Q Consensus 9 ~~~~il~~~~~~~-GH---~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~i~~~~~~ 80 (454)
.+..|++.+..+. .- ..-...|++.| .++| .+|.+++++... +.+... .. +.+ ...+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l--~~~~--~~vvl~g~~~~~~~~~~~~~---~~--~~~~~~~~~~----- 169 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERL--KERG--YRVVLLGGPEEQEKEIADQI---AA--GLQNPVINLA----- 169 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHH--CCCT---EEEE--SSHHHHHHHHHHH---HT--THTTTTEEET-----
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHH--HhhC--ceEEEEccchHHHHHHHHHH---HH--hcccceEeec-----
Confidence 3456777766533 22 23358999999 8999 999999887652 222221 00 111 11110
Q ss_pred CCCCCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCc
Q 012893 81 GFRFTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~ 147 (454)
....+.+ +..++. ..|++|+. ..+...+|..+|+|+|.+...
T Consensus 170 ------------------~~~~l~e-~~ali~----~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 170 ------------------GKTSLRE-LAALIS----RADLVIGN--DTGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp ------------------TTS-HHH-HHHHHH----TSSEEEEE--SSHHHHHHHHTT--EEEEESS
T ss_pred ------------------CCCCHHH-HHHHHh----cCCEEEec--CChHHHHHHHHhCCEEEEecC
Confidence 0011222 233444 55999976 334668999999999998643
No 285
>PRK09165 replicative DNA helicase; Provisional
Probab=33.81 E-value=1.7e+02 Score=29.94 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhh-------------cCCCcEEEEEEeCCCcCccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEA-------------ALEEEVTFSFFSTAQSNGSL 57 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~-------------~~G~~h~V~~~~~~~~~~~~ 57 (454)
=+++...|+.|=..-++.+|...+.. ..| ..|.|++.+...+.+
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g--~~vl~fSlEMs~~ql 275 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNG--GVVGFFSLEMSAEQL 275 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCC--CeEEEEeCcCCHHHH
Confidence 35677778999999999998887311 137 899999987666543
No 286
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=33.78 E-value=1.1e+02 Score=31.99 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccC----------hHhhhcccCcceEEecCCch-
Q 012893 287 RAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAP----------QLKILEHSSVCVFVTHCGWN- 355 (454)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp----------~~~ll~~~~~~~~I~HgG~g- 355 (454)
....+.+++.|++.|.+.++...+.....+-+.+.+ ..++..+.... +...-.+ ..++++|.|-|
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~--~~~i~~v~~~hE~~A~~aAdgyar~tg~--~~v~~vt~GpG~ 84 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAE--HPRLRLHTHFDERSAGFLALGLAKASKR--PVAVIVTSGTAV 84 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHh--CCCcEEEeecCcccHHHHHHHHHHhhCC--CEEEEECCccHH
Confidence 344467888899999988888887754333333321 12343332111 1111112 34788888855
Q ss_pred -----hHHHHHHcCCCeeccc
Q 012893 356 -----STIEGITGGVPMVCRP 371 (454)
Q Consensus 356 -----sv~eal~~GvP~i~~P 371 (454)
.+.||-..++|||++.
T Consensus 85 ~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 85 ANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred HhhhHHHHHHhhcCCcEEEEE
Confidence 7899999999999884
No 287
>PRK06849 hypothetical protein; Provisional
Probab=33.26 E-value=72 Score=31.41 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 8 TQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
..+++||++... ..-.+.++++| +++| |+|..+....
T Consensus 2 ~~~~~VLI~G~~----~~~~l~iar~l--~~~G--~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGAR----APAALELARLF--HNAG--HTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHH--HHCC--CEEEEEeCCc
Confidence 346788887433 23689999999 9999 9999987753
No 288
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=33.17 E-value=1.8e+02 Score=26.69 Aligned_cols=37 Identities=14% Similarity=-0.077 Sum_probs=30.9
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 13 VAVLA-FPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 13 il~~~-~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
++|+. -|+-|-..-...+|..+ .+.| ++|.++.....
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~--a~~g--~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRL--AEQG--KKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHH--HHCC--CCceEEeCCCc
Confidence 44444 57999999999999999 8899 99999988653
No 289
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=33.03 E-value=3.3e+02 Score=25.17 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPE 80 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (454)
++||+++.+++...-. .+..+| ++.| ++|.++......+..... ..++.+-+|.++..
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al--~~aG--~~v~~v~~~~~~~~~~~l------~~~DgLvipGGfs~ 60 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAF--RRLG--VEPEYVHINDLAAERKSV------SDYDCLVIPGGFSA 60 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHH--HHCC--CcEEEEeeccccccccch------hhCCEEEECCCCCc
Confidence 5799999998776443 557899 8899 999888764322211112 26777777766543
No 290
>PRK05920 aromatic acid decarboxylase; Validated
Probab=32.86 E-value=3.4e+02 Score=24.05 Aligned_cols=34 Identities=12% Similarity=-0.062 Sum_probs=25.2
Q ss_pred HHHHcCCCeecccc-ccch---hHHHHHHHHhhceeecC
Q 012893 359 EGITGGVPMVCRPV-FADQ---ALNQRIIETAWGIGVGV 393 (454)
Q Consensus 359 eal~~GvP~i~~P~-~~DQ---~~nA~~v~~~~G~G~~~ 393 (454)
+++..++|++++|. .... ..|...+.+. |+-+.-
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~-G~~ii~ 162 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEA-GAIILP 162 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHC-CCEEeC
Confidence 56889999999996 3333 4777888877 877643
No 291
>PRK08266 hypothetical protein; Provisional
Probab=32.82 E-value=4.2e+02 Score=27.41 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=36.1
Q ss_pred eEEecCCchhHHH--HHHcCCCeeccccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIE--GITGGVPMVCRPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~e--al~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++..||+|.+.. -..++-...... .+.+..+...+.. |+. ..++ +.++|.+++.+.++
T Consensus 452 vv~NN~~y~~~~~~~~~~~~~~~~~~~--~~~~d~~~la~a~-G~~~~~v~----~~~el~~al~~a~~ 513 (542)
T PRK08266 452 VVFNNNAYGNVRRDQKRRFGGRVVASD--LVNPDFVKLAESF-GVAAFRVD----SPEELRAALEAALA 513 (542)
T ss_pred EEEeCCcchHHHHHHHHhcCCCcccCC--CCCCCHHHHHHHc-CCeEEEeC----CHHHHHHHHHHHHh
Confidence 6789999987632 222333322221 1235677777777 874 3343 57889888888765
No 292
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=32.74 E-value=2.2e+02 Score=26.97 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=48.4
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeecc--------------------
Q 012893 275 IYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWA-------------------- 334 (454)
Q Consensus 275 v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~v-------------------- 334 (454)
||++.|..+. .-.....+++.+.+.|+.+.+.++.... ..++.+...-++...+..
T Consensus 3 i~~~~g~~~g-~~~~~~~La~~L~~~g~eV~vv~~~~~~---~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 78 (348)
T TIGR01133 3 VVLAAGGTGG-HIFPALAVAEELIKRGVEVLWLGTKRGL---EKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKA 78 (348)
T ss_pred EEEEeCccHH-HHhHHHHHHHHHHhCCCEEEEEeCCCcc---hhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHH
Confidence 5666666642 1223357899999999988777664321 111111000111111110
Q ss_pred --ChHhhhcccCcceEEecCCchhHH---HHHHcCCCeec
Q 012893 335 --PQLKILEHSSVCVFVTHCGWNSTI---EGITGGVPMVC 369 (454)
Q Consensus 335 --p~~~ll~~~~~~~~I~HgG~gsv~---eal~~GvP~i~ 369 (454)
....++..-+.|++|+|++..++. -+...|+|.+.
T Consensus 79 ~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 79 VFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 112345554456999998876544 34557889874
No 293
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=32.46 E-value=1e+02 Score=29.50 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=28.6
Q ss_pred cCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 17 AFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 17 ~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
+.|+.|-+--.+.||++| +++| ..+-+++-..
T Consensus 56 tvGGtGKTP~vi~la~~l--~~rG--~~~gvvSRGY 87 (336)
T COG1663 56 TVGGTGKTPVVIWLAEAL--QARG--VRVGVVSRGY 87 (336)
T ss_pred EECCCCcCHHHHHHHHHH--HhcC--CeeEEEecCc
Confidence 458999999999999999 9999 9999998754
No 294
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=32.44 E-value=3.1e+02 Score=28.76 Aligned_cols=102 Identities=11% Similarity=-0.043 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHH--HcCCCeec
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGI--TGGVPMVC 369 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal--~~GvP~i~ 369 (454)
.+-..++..+.++|..+|.....--..++...+..|+-+ +-+|+..||+|.+.... +++....-
T Consensus 427 aiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpv--------------v~iV~NN~~yg~i~~~q~~~~~~~~~~ 492 (588)
T TIGR01504 427 ALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPY--------------IHVLVNNAYLGLIRQAQRAFDMDYCVQ 492 (588)
T ss_pred HHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCe--------------EEEEEeCCchHHHHHHHHHhcccccce
Confidence 455556667778888888654211111111111111111 22788999999876542 22221110
Q ss_pred c-----c-cccc--hhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 370 R-----P-VFAD--QALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 370 ~-----P-~~~D--Q~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
. + ...+ ....+...+.. |+ |..+. +.++|.+++++.++
T Consensus 493 ~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~----~~~eL~~al~~a~~ 539 (588)
T TIGR01504 493 LAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVF----KPEEIAPAFEQAKA 539 (588)
T ss_pred eeccccccccccCCCCCHHHHHHHC-CCEEEEEC----CHHHHHHHHHHHHh
Confidence 0 0 0011 35667777777 64 33333 68999999999874
No 295
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=32.23 E-value=78 Score=28.28 Aligned_cols=44 Identities=5% Similarity=-0.146 Sum_probs=38.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
.+.||++.+.++-.|-....-++-.| +.+| ++|++++.....+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l--~~~G--~~Vi~LG~~vp~e~ 130 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVIL--SNNG--YEVIDLGVMVPIEK 130 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHH--HhCC--CEEEECCCCCCHHH
Confidence 46899999999999999999999999 9999 99999997654443
No 296
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.10 E-value=2.9e+02 Score=26.20 Aligned_cols=93 Identities=24% Similarity=0.224 Sum_probs=51.3
Q ss_pred EEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeecc--------------------
Q 012893 275 IYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWA-------------------- 334 (454)
Q Consensus 275 v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~v-------------------- 334 (454)
|+++.|..+. .......+++.+.+.|+.+.+.+....... . ..+...-.+..+...
T Consensus 2 ~~~~~~~~gG-~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T cd03785 2 ILIAGGGTGG-HIFPALALAEELRERGAEVLFLGTKRGLEA--R-LVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKG 77 (350)
T ss_pred EEEEecCchh-hhhHHHHHHHHHHhCCCEEEEEECCCcchh--h-cccccCCceEEEEecCcCCCChHHHHHHHHHHHHH
Confidence 6667766652 333556889999999999988876543110 0 000000111112111
Q ss_pred --ChHhhhcccCcceEEecCCchh---HHHHHHcCCCeeccc
Q 012893 335 --PQLKILEHSSVCVFVTHCGWNS---TIEGITGGVPMVCRP 371 (454)
Q Consensus 335 --p~~~ll~~~~~~~~I~HgG~gs---v~eal~~GvP~i~~P 371 (454)
-...++..-..+++++|++..+ ..-+...|+|.++..
T Consensus 78 ~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~ 119 (350)
T cd03785 78 VLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHE 119 (350)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEc
Confidence 0123445544569999987544 334567799998643
No 297
>PRK05920 aromatic acid decarboxylase; Validated
Probab=32.09 E-value=36 Score=30.14 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccc
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLF 58 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~ 58 (454)
++||++...++.+= +=.+.+.+.| ++.| |+|.++.++...+++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L--~~~g--~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECL--LAAD--YEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHH--HHCC--CEEEEEEChhHHHHHH
Confidence 36888887776665 6899999999 9999 9999999987666553
No 298
>PRK11914 diacylglycerol kinase; Reviewed
Probab=31.95 E-value=1.4e+02 Score=28.14 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=46.4
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCC
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCG 353 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG 353 (454)
.+.++--|-.......+..+.+.+++.+..+.+....... ....+.+ .... ...+++|.-||
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~--~~~~~a~--------------~~~~--~~~d~vvv~GG 73 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAH--DARHLVA--------------AALA--KGTDALVVVGG 73 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHH--HHHHHHH--------------HHHh--cCCCEEEEECC
Confidence 3444433332223456677888888888776544332211 0111110 0111 22348999999
Q ss_pred chhHHHHH----HcCCCeecccc
Q 012893 354 WNSTIEGI----TGGVPMVCRPV 372 (454)
Q Consensus 354 ~gsv~eal----~~GvP~i~~P~ 372 (454)
=||+.|++ ..++|+-++|.
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeC
Confidence 99999987 34789899995
No 299
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.94 E-value=62 Score=27.81 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=52.8
Q ss_pred cCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCC----CC------CCCCC--------
Q 012893 22 THAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVES----GL------PEGFR-------- 83 (454)
Q Consensus 22 GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~------~~~~~-------- 83 (454)
+.+.-.+..|+.|. .+.| .+|.+.-+ ...+.+++. .+++.+.++- -+ .....
T Consensus 17 ~~~e~~v~~a~~~~-~~~g--~dViIsRG-~ta~~lr~~------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 17 ASLEEAVEEARQLL-ESEG--ADVIISRG-GTAELLRKH------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp --HHHHHHHHHHHH-TTTT---SEEEEEH-HHHHHHHCC-------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred ecHHHHHHHHHHhh-HhcC--CeEEEECC-HHHHHHHHh------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 55667778888772 2467 88877666 344555555 2566666641 00 00000
Q ss_pred CCCCCcchHHHHHHh--------chHHHHHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeCc
Q 012893 84 FTGNPREPVEHFLKA--------TPGNFVRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 84 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~ 147 (454)
........+..++.. ....+...+.++. ..+.|+||.+.. ...+|+++|+|++.+.++
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~---~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAK---AEGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHH---HTT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHH---HcCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 000111222222211 1122333333332 348999999954 468999999999998664
No 300
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=31.93 E-value=82 Score=31.33 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=21.2
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
+||++|.+.. ...+|+++|||++...
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~~ 381 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDIN 381 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEcc
Confidence 8999999944 3478999999998654
No 301
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=31.91 E-value=1.7e+02 Score=28.13 Aligned_cols=33 Identities=15% Similarity=0.006 Sum_probs=28.9
Q ss_pred cCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 17 AFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 17 ~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
+.|+.|=+--.+.|++.| +++| ++|.+++-..-
T Consensus 44 tvGGTGKTP~v~~L~~~L--~~~G--~~~~IlSRGYg 76 (326)
T PF02606_consen 44 TVGGTGKTPLVIWLARLL--QARG--YRPAILSRGYG 76 (326)
T ss_pred ccCCCCchHHHHHHHHHH--HhcC--CceEEEcCCCC
Confidence 457999999999999999 9999 99999998543
No 302
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.91 E-value=1.3e+02 Score=26.10 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=22.5
Q ss_pred CccEEEEcC--chhhHHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDA--FLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~--~~~~~~~~A~~lgiP~v~~~ 145 (454)
++|.|++=- -...+..+|.++|+|+|.+-
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 689988652 23466699999999999974
No 303
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=31.72 E-value=2.7e+02 Score=22.95 Aligned_cols=64 Identities=19% Similarity=0.076 Sum_probs=37.2
Q ss_pred eEEecCCchhHHHHHHcCCC-ee--ccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIEGITGGVP-MV--CRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~eal~~GvP-~i--~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++.++|++.+..-....-. .. ..+........+...+.. |+- ..+-++.+.++|.+++++.++
T Consensus 78 vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~-~~~v~~~~~~el~~al~~a~~ 144 (153)
T PF02775_consen 78 VVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIK-GARVTTPDPEELEEALREALE 144 (153)
T ss_dssp EEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSE-EEEESCHSHHHHHHHHHHHHH
T ss_pred EEEeCCcceEeccccccCcCcccccccccccccCCHHHHHHHc-CCc-EEEEccCCHHHHHHHHHHHHh
Confidence 78888888877665222111 11 111123455667777777 765 223222356999999998874
No 304
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=31.47 E-value=3.6e+02 Score=28.25 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred eEEecCCchhHHH--HHHcCCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIE--GITGGVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~e--al~~GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++.+||+|.+.. -+.++-+....- .......+...+.. |+ |..+. +.++|.+++.+.++
T Consensus 469 vV~NN~~~g~~~~~~~~~~~~~~~~~~-~~~~~d~~~la~a~-G~~~~~v~----~~~el~~al~~a~~ 531 (586)
T PRK06276 469 CIFDNRTLGMVYQWQNLYYGKRQSEVH-LGETPDFVKLAESY-GVKADRVE----KPDEIKEALKEAIK 531 (586)
T ss_pred EEEeCCchHHHHHHHHHHhCCCccccc-CCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 7899999997653 334454332110 01235667777777 76 33332 67999999988763
No 305
>PRK07524 hypothetical protein; Provisional
Probab=31.46 E-value=4.4e+02 Score=27.22 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=62.1
Q ss_pred cEEEEe----eCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceE
Q 012893 273 SVIYIS----FGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVF 348 (454)
Q Consensus 273 ~~v~vs----~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~ 348 (454)
|.-|++ +|+++. ..=..+-.+++..+.++|+.+|.....--..++......|+ +-+-++
T Consensus 396 p~~~~~~~~~~g~mG~---~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~l--------------pi~~vV 458 (535)
T PRK07524 396 PRRWFNASTGYGTLGY---GLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADL--------------PLIVLL 458 (535)
T ss_pred CCceEeCCCCcccccc---hHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCC--------------CeEEEE
Confidence 445554 466653 22234555666677888888886532111111111111111 111268
Q ss_pred EecCCchhHHHHHHc-CCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhcC
Q 012893 349 VTHCGWNSTIEGITG-GVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 349 I~HgG~gsv~eal~~-GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
+.++|+|.+...... +.+.... ....+..+...+.. |+ |..++ +.++|.+++++.++.
T Consensus 459 ~NN~~~g~i~~~~~~~~~~~~~~--~~~~~d~~~~A~a~-G~~~~~v~----~~~el~~al~~a~~~ 518 (535)
T PRK07524 459 WNNDGYGEIRRYMVARDIEPVGV--DPYTPDFIALARAF-GCAAERVA----DLEQLQAALRAAFAR 518 (535)
T ss_pred EECCchHHHHHHHHHhcCCcccc--CCCCCCHHHHHHHC-CCcEEEeC----CHHHHHHHHHHHHhC
Confidence 889999988654331 2221110 11245677777777 76 34443 678999999887753
No 306
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.31 E-value=5e+02 Score=25.25 Aligned_cols=129 Identities=12% Similarity=-0.043 Sum_probs=76.6
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCC
Q 012893 7 STQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTG 86 (454)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 86 (454)
..++.|++++.-|--||--++--=|..| .+.| ++|.+++....... ++. .++| +++++.++. ++....
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sl--a~~g--f~VdliGy~~s~p~-e~l-~~hp--rI~ih~m~~-l~~~~~--- 76 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSL--AKLG--FQVDLIGYVESIPL-EEL-LNHP--RIRIHGMPN-LPFLQG--- 76 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHH--HHcC--CeEEEEEecCCCCh-HHH-hcCC--ceEEEeCCC-CcccCC---
Confidence 4668899999999999999999999999 8899 99999997654321 111 1133 899999972 221110
Q ss_pred CCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEE-EcCchhhHHHHH----HHcCCCeEEEeCchhhh
Q 012893 87 NPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLI-TDAFLWFAAEMA----EEMRVPWIAYWTAGPRS 151 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi-~d~~~~~~~~~A----~~lgiP~v~~~~~~~~~ 151 (454)
..+.+...++.. -++-..+-.++- ..++|.++ .+.-+.....++ .-.|..++.=+....|+
T Consensus 77 -~p~~~~l~lKvf-~Qfl~Ll~aL~~--~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 77 -GPRVLFLPLKVF-WQFLSLLWALFV--LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred -CchhhhhHHHHH-HHHHHHHHHHHh--ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 122222222332 222233333333 24788765 454444444444 44577777766554443
No 307
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=31.22 E-value=1.3e+02 Score=27.09 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcC-CCcEEEEEEeCCCcCccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAAL-EEEVTFSFFSTAQSNGSL 57 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~-G~~h~V~~~~~~~~~~~~ 57 (454)
=+++...++.|=..=++.++..+ ... | +.|.|++.+...+.+
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~--~~~~g--~~vly~s~E~~~~~~ 57 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENI--AKKQG--KPVLFFSLEMSKEQL 57 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH--HHhCC--CceEEEeCCCCHHHH
Confidence 34556667999999999998888 555 9 999999987655543
No 308
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=31.12 E-value=29 Score=31.97 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=39.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccccc
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFME 60 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~ 60 (454)
...++|.-.++.|=..=..+||++| .++| +.|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g--~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNEL--LKAG--ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH--HHcC--CeEEEEEHHHHHHHHHHH
Confidence 3478888889999999999999999 8889 999999998776666544
No 309
>PLN02470 acetolactate synthase
Probab=31.04 E-value=3.6e+02 Score=28.25 Aligned_cols=112 Identities=11% Similarity=-0.068 Sum_probs=58.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHH
Q 012893 279 FGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTI 358 (454)
Q Consensus 279 ~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ 358 (454)
+|+++. ..=..+-.+++..+.+++..+|.....--..++......++-+ +-+++..||+|.+.
T Consensus 425 ~g~mG~---glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v--------------~ivV~NN~~yg~i~ 487 (585)
T PLN02470 425 LGAMGF---GLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPV--------------KIMVLNNQHLGMVV 487 (585)
T ss_pred cccccc---hHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCe--------------EEEEEeCCcchHHH
Confidence 355543 3334555666667788888888654211111111111111111 12789999999875
Q ss_pred HH--HHcCCCee--c--ccccc--chhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 359 EG--ITGGVPMV--C--RPVFA--DQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 359 ea--l~~GvP~i--~--~P~~~--DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+- ..++.+.. . .|... ..+..+...+.. |+ |.++. +.++|.+++.+.++
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~----~~~el~~al~~a~~ 545 (585)
T PLN02470 488 QWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVT----RKSDLREAIQKMLD 545 (585)
T ss_pred HHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 43 23332211 1 11100 125677777777 76 34443 68999999988774
No 310
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=30.95 E-value=2.5e+02 Score=24.70 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCcEEEEEcCC-CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 9 QRRHVAVLAFP-FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 9 ~~~~il~~~~~-~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
++.++-|+..| .-|-..-+|.-++.. +.+| -+|.++.+...
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~--~~~g--~~v~vfkp~iD 43 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRY--KEAG--MKVLVFKPAID 43 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHH--HHcC--CeEEEEecccc
Confidence 35677777776 789999999999999 8899 99999988644
No 311
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=30.82 E-value=55 Score=26.80 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
+.+|++.+..+-+|-.-.--++..| ++.| ++|...+.....+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l--~~~G--feVi~LG~~v~~e~ 43 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAF--TNAG--FNVVNLGVLSPQEE 43 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHH--HHCC--CEEEECCCCCCHHH
Confidence 3589999999999999998899999 9999 99999998665554
No 312
>PRK08760 replicative DNA helicase; Provisional
Probab=30.75 E-value=2.2e+02 Score=28.97 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
=+++...|+.|=..-++.+|...+ .+.| +.|.|++.+...+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a-~~~g--~~V~~fSlEMs~~q 272 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAA-IKSK--KGVAVFSMEMSASQ 272 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHH-HhcC--CceEEEeccCCHHH
Confidence 456677789999999999998872 2458 89999998765543
No 313
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.59 E-value=76 Score=32.68 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=24.8
Q ss_pred HHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 108 EKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 108 ~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
.++++.. +||+||.+.. ...+|+++|||++.++
T Consensus 367 ~~~I~~~--~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 367 GDMIARV--EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHhc--CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 3344444 8999999963 4467899999998875
No 314
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=30.49 E-value=3.4e+02 Score=22.99 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=54.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEe---CC-CcCc-cccccccccCCCCeeEEeCCCCCCCCCCCCC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFS---TA-QSNG-SLFMEKDELRDCKIVPYNVESGLPEGFRFTG 86 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~---~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 86 (454)
-|.+.+.++.|=....+.+|-+. ..+| ++|.|+- +. ...+ .+.+. ++ ++.+.....++.... .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra--~~~g--~~v~~vQFlKg~~~~gE~~~l~~---l~--~v~~~~~g~~~~~~~---~ 71 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA--LGHG--YRVGVVQFLKGGWKYGELKALER---LP--NIEIHRMGRGFFWTT---E 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCC--CeEEEEEEeCCCCccCHHHHHHh---CC--CcEEEECCCCCccCC---C
Confidence 46667778999999999998888 7889 9999943 32 1111 11111 33 677777654332211 1
Q ss_pred CCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchh
Q 012893 87 NPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLW 128 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~ 128 (454)
+..+.. ......+.. .+..+.. ...|+||-|-+..
T Consensus 72 ~~~~~~----~~a~~~~~~-a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 72 NDEEDI----AAAAEGWAF-AKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred ChHHHH----HHHHHHHHH-HHHHHhc--CCCCEEEEechHh
Confidence 111111 122222322 2333333 3889999997653
No 315
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=30.40 E-value=47 Score=30.17 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=34.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcC--CCcEEEEEEeCCCcCcccccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAAL--EEEVTFSFFSTAQSNGSLFME 60 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~--G~~h~V~~~~~~~~~~~~~~~ 60 (454)
||++...|+.+=+.-.+.|.+.| ++. | ++|.++.++...+.+...
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L--~~~~~g--~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKEL--KREIEE--LRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHH--HhhcCC--CeEEEEEChhHHhHHhhh
Confidence 46666666666668999999999 988 9 999999997665555433
No 316
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.16 E-value=6.2e+02 Score=26.33 Aligned_cols=103 Identities=7% Similarity=-0.040 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHH--HHcCCCee
Q 012893 291 IALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEG--ITGGVPMV 368 (454)
Q Consensus 291 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ea--l~~GvP~i 368 (454)
..+-..++..+.++|..+|.....--..++......|+-+ +-+++.+||+|.+..- ..++-+..
T Consensus 422 aaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i--------------~~vV~NN~~y~~i~~~~~~~~~~~~~ 487 (561)
T PRK06048 422 AAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPV--------------IVAILNNGYLGMVRQWQELFYDKRYS 487 (561)
T ss_pred HHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCe--------------EEEEEECCccHHHHHHHHHHcCCccc
Confidence 3455556666788888888654211111111111111111 1278999999977532 22332221
Q ss_pred ccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 369 CRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 369 ~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
.. .....+..+...+.. |+- ..+- -+.++|.+++.+.+.
T Consensus 488 ~~-~~~~~~d~~~lA~a~-G~~-~~~v--~t~~el~~al~~a~~ 526 (561)
T PRK06048 488 HT-CIKGSVDFVKLAEAY-GAL-GLRV--EKPSEVRPAIEEAVA 526 (561)
T ss_pred cc-CCCCCCCHHHHHHHC-CCe-EEEE--CCHHHHHHHHHHHHh
Confidence 11 001235677777777 753 2222 278899999988874
No 317
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=30.15 E-value=86 Score=32.36 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 109 KAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 109 ~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
+.++.. +||+||.+.. ...+|+++|||++.++
T Consensus 356 ~~i~~~--~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 356 DAIAEA--APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHhc--CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 334444 8999998853 4568999999999875
No 318
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=29.95 E-value=3.4e+02 Score=28.40 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHH--HHcCCCeec
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEG--ITGGVPMVC 369 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ea--l~~GvP~i~ 369 (454)
.+-..++..+.++|..+|.....--..++...+..+. +-+-+++.++|+|.+... ..++-+...
T Consensus 439 aiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Tavr~~l--------------pvi~vV~NN~~yg~i~~~~~~~~~~~~~~ 504 (579)
T TIGR03457 439 IIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVRHDI--------------PVTAVVFRNRQWGAEKKNQVDFYNNRFVG 504 (579)
T ss_pred HHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCC--------------CeEEEEEECcchHHHHHHHHHhhCCccee
Confidence 4555666677888888886542111111111111111 112378999999976532 222222111
Q ss_pred cccccch-hHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 370 RPVFADQ-ALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 370 ~P~~~DQ-~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
. ..+. ...+...+.. |+ |..++ +.++|.+++++.++
T Consensus 505 ~--~~~~~~d~~~lA~a~-G~~g~~v~----~~~el~~al~~a~~ 542 (579)
T TIGR03457 505 T--ELESELSFAGIADAM-GAKGVVVD----KPEDVGPALKKAIA 542 (579)
T ss_pred c--cCCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 1 1122 3667777777 64 33333 78899999888775
No 319
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=29.78 E-value=1.9e+02 Score=21.19 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012893 398 FTKDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVNM 453 (454)
Q Consensus 398 ~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
.+++.+.+.+..++++ +|.+....+.+.+.+ |-+..+-+..+.+.+.+
T Consensus 3 p~~~~i~~i~~~~~~~----~~~~~~~~~~~l~~~----G~s~~~Il~~l~~~l~~ 50 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG----DFKEARKKLYELLVE----GYSASDILKQLHEVLVE 50 (89)
T ss_dssp --HHHHHHHHHHHHHT----CHHHHHHHHHHHHHT----T--HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC----CHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHH
Confidence 4677888888877765 566655555555444 67777888888887764
No 320
>PF14165 YtzH: YtzH-like protein
Probab=29.64 E-value=1.3e+02 Score=22.43 Aligned_cols=49 Identities=6% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhhC----------CChHHHHHHHHHHH
Q 012893 400 KDETVNALKQVLSSEEGKRMRENVGALKKLAFKAVESD----------GSSTKNFKALVEVV 451 (454)
Q Consensus 400 ~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~ 451 (454)
.++|.+-|..+|.|+ ..-...+.+-..+.++.+.| .+-...+..||+.+
T Consensus 28 cEQieRLvksLm~n~---~i~~~ik~~L~~Iy~ysq~G~~~~~l~~Hi~~~q~~l~qWv~~i 86 (87)
T PF14165_consen 28 CEQIERLVKSLMANP---NIDADIKQTLEEIYSYSQNGKYAQSLDNHIEFHQSNLSQWVNDI 86 (87)
T ss_pred HHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHHHccCccccchhhhhHhhHHHHHHHHHhc
Confidence 478999999999987 55666666666666655553 33345666666653
No 321
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=29.63 E-value=4e+02 Score=27.59 Aligned_cols=101 Identities=11% Similarity=-0.005 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHH--HHcCCCeec
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEG--ITGGVPMVC 369 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ea--l~~GvP~i~ 369 (454)
.+-..++..+.+++..+|.....--..++......++ +-+-+++..+|+|.+..- ..++.+...
T Consensus 410 AiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l--------------~v~ivV~NN~~~~~~~~~~~~~~~~~~~~ 475 (548)
T PRK08978 410 AIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQL--------------PVKIVLLDNQRLGMVRQWQQLFFDERYSE 475 (548)
T ss_pred HHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCC--------------CeEEEEEeCCccHHHHHHHHHHhCCccee
Confidence 4555666677888888886542111111111000111 112278899999977432 223322211
Q ss_pred cccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 370 RPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 370 ~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
. ...+.+..+...+.. |+ |.++. +.++|.+++++.++
T Consensus 476 ~-~~~~~~d~~~la~a~-G~~~~~v~----~~~el~~al~~a~~ 513 (548)
T PRK08978 476 T-DLSDNPDFVMLASAF-GIPGQTIT----RKDQVEAALDTLLN 513 (548)
T ss_pred c-CCCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 1 011346777777777 75 33333 68899999988874
No 322
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=1.4e+02 Score=29.59 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSL 57 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~ 57 (454)
=||+---|+.|--.=.|.++..| .+++ +|.+++++....++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~l--A~~~---~vLYVsGEES~~Qi 135 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARL--AKRG---KVLYVSGEESLQQI 135 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHH--HhcC---cEEEEeCCcCHHHH
Confidence 35666668999999999999999 7788 99999998777654
No 323
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=29.38 E-value=1.1e+02 Score=19.64 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 012893 399 TKDETVNALKQVLSSEEGKRMRENVGAL 426 (454)
Q Consensus 399 ~~~~l~~av~~vl~~~~~~~~~~~a~~l 426 (454)
+.++|..||..|..+. -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4689999999999763 3788877764
No 324
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=29.37 E-value=5.3e+02 Score=27.23 Aligned_cols=112 Identities=10% Similarity=-0.020 Sum_probs=57.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHH
Q 012893 279 FGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTI 358 (454)
Q Consensus 279 ~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ 358 (454)
+|+++. ..=..+-..++..+.+++..+|.....--..++.....-|+ +=+-+++.++++|.+.
T Consensus 433 ~g~mG~---glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~l--------------pvi~vV~NN~~~g~i~ 495 (616)
T PRK07418 433 LGTMGF---GMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYGI--------------NVKTVIINNGWQGMVR 495 (616)
T ss_pred cccccc---HHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhCC--------------CeEEEEEECCcchHHH
Confidence 355543 33335556666677888877776542111111111111111 1123788999998765
Q ss_pred HHH--HcCCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 359 EGI--TGGVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 359 eal--~~GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
.-- .++.+.....+....+..+...+.. |+ |.++. +.++|.+++.+.++
T Consensus 496 ~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~----~~~el~~al~~a~~ 547 (616)
T PRK07418 496 QWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVIS----ERDQLKDAIAEALA 547 (616)
T ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeC----CHHHHHHHHHHHHh
Confidence 332 2232211111101125677777777 75 33333 78999999988764
No 325
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=29.35 E-value=1.1e+02 Score=27.74 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=36.1
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccc
Q 012893 12 HVAVLAF-PFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFM 59 (454)
Q Consensus 12 ~il~~~~-~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~ 59 (454)
=|.|+.+ |+-|=..-.+.||.+| .++| -.|+++=...+....+.
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~l--a~~G--~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASEL--AARG--ARVALIDADPNQPLAKW 47 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHH--HHCC--CeEEEEeCCCCCcHHHH
Confidence 3555555 7999999999999999 8899 99999988877765544
No 326
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.27 E-value=61 Score=28.82 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
|+-|++..+|+-|-....-.||++| .+++ |+|.-++..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L--~~~i--~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKEL--RQEI--WRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHH--HHhh--hhccccchh
Confidence 3457777889999999999999999 9999 988776653
No 327
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=29.10 E-value=5e+02 Score=27.13 Aligned_cols=111 Identities=19% Similarity=0.091 Sum_probs=58.0
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhH
Q 012893 278 SFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNST 357 (454)
Q Consensus 278 s~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv 357 (454)
++||++. ..=..+-.+++..+.++|..+|.....--..++......+. +=+-+++.++|+|.+
T Consensus 406 ~~G~mG~---~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~l--------------pv~ivV~NN~~~g~i 468 (574)
T PRK09124 406 NHGSMAN---AMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKL--------------PVKIVVFNNSVLGFV 468 (574)
T ss_pred Ccccccc---hHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCC--------------CeEEEEEeCCccccH
Confidence 4466654 22234445556667788888886542111111111111111 112278999999987
Q ss_pred HHHH-HcCCCeeccccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 358 IEGI-TGGVPMVCRPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 358 ~eal-~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
..-. ..+..... ....++..+...+.. |+- ..++ +.++|.+++++.++
T Consensus 469 ~~~~~~~~~~~~~--~~~~~~d~~~lA~a~-G~~~~~v~----~~~eL~~al~~a~~ 518 (574)
T PRK09124 469 AMEMKAGGYLTDG--TDLHNPDFAAIAEAC-GITGIRVE----KASELDGALQRAFA 518 (574)
T ss_pred HHHHHhcCCcccc--CcCCCCCHHHHHHHC-CCeEEEeC----CHHHHHHHHHHHHh
Confidence 4222 11210000 112356778888888 763 3333 78999999998764
No 328
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=28.91 E-value=1.2e+02 Score=25.48 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=45.9
Q ss_pred EecCCchhHHHHHHcCCCeecccc-ccchhHHHHHHHHhhceeecCcCCCCC--HHHHHHHHHHHhcC
Q 012893 349 VTHCGWNSTIEGITGGVPMVCRPV-FADQALNQRIIETAWGIGVGVXGEKFT--KDETVNALKQVLSS 413 (454)
Q Consensus 349 I~HgG~gsv~eal~~GvP~i~~P~-~~DQ~~nA~~v~~~~G~G~~~~~~~~~--~~~l~~av~~vl~~ 413 (454)
|+-+|-.|+.++++.- +.+++ -+|-..-..-++++ +.|+-+.+++-. -+.|.+++....+.
T Consensus 3 VsG~GKStvg~~lA~~---lg~~fidGDdlHp~aNi~KM-~~GiPL~DdDR~pWL~~l~~~~~~~~~~ 66 (161)
T COG3265 3 VSGSGKSTVGSALAER---LGAKFIDGDDLHPPANIEKM-SAGIPLNDDDRWPWLEALGDAAASLAQK 66 (161)
T ss_pred CCccCHHHHHHHHHHH---cCCceecccccCCHHHHHHH-hCCCCCCcchhhHHHHHHHHHHHHhhcC
Confidence 4567888999998873 44665 47888888889999 999999765443 37888888876654
No 329
>PRK08611 pyruvate oxidase; Provisional
Probab=28.90 E-value=4.4e+02 Score=27.58 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=57.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHH
Q 012893 279 FGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTI 358 (454)
Q Consensus 279 ~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ 358 (454)
+|+++. ..=-.+-.++...+.++|..+|.....--..++......++ +-+-+|+..||+|.+.
T Consensus 407 ~g~mG~---glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l--------------~~iivV~NN~~~g~i~ 469 (576)
T PRK08611 407 LGTMGC---GLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKL--------------PIVVVVLNNQQLAFIK 469 (576)
T ss_pred chhhhh---hHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCC--------------CeEEEEEeCCcchHHH
Confidence 566653 22223444556567888888886532111111111111111 1122899999999874
Q ss_pred HHH-HcCCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 359 EGI-TGGVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 359 eal-~~GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
..- ..+.+-. .....+...+...+.. |+ |..+. +.++|.+++++.++
T Consensus 470 ~~q~~~~~~~~--~~~~~~~d~~~lA~a~-G~~~~~v~----~~~eL~~al~~a~~ 518 (576)
T PRK08611 470 YEQQAAGELEY--AIDLSDMDYAKFAEAC-GGKGYRVE----KAEELDPAFEEALA 518 (576)
T ss_pred HHHHHhcCCcc--cccCCCCCHHHHHHHC-CCeEEEeC----CHHHHHHHHHHHHh
Confidence 221 1122211 1111246777777777 75 34443 78999999988765
No 330
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.75 E-value=81 Score=27.08 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=20.4
Q ss_pred CccEEEEcCchhh--HHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDAFLWF--AAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~~~--~~~~A~~lgiP~v~~~ 145 (454)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998643322 3334478999998875
No 331
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.59 E-value=20 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=23.0
Q ss_pred cccCcceEEecCCchhHHHHHHcCCCeecccccc
Q 012893 341 EHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFA 374 (454)
Q Consensus 341 ~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~ 374 (454)
.+..++++|++||......... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4456679999999999998877 99999998753
No 332
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.56 E-value=3e+02 Score=21.86 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=34.4
Q ss_pred ccchhccCCCCcEEEEeeCCCCCC-CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhh
Q 012893 262 CLPWLNEHENASVIYISFGSMITP-PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGF 320 (454)
Q Consensus 262 ~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 320 (454)
...|+..+ -+.+|.|-.... +...+..+++.+.+.+.-.+..-.+.....+|+..
T Consensus 36 ~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~ 91 (123)
T PF07905_consen 36 PSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEI 91 (123)
T ss_pred HHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHH
Confidence 44687653 366666666655 56678889999999887655553333333455433
No 333
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=28.51 E-value=77 Score=30.13 Aligned_cols=35 Identities=9% Similarity=-0.021 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
.+|||+++-.|+.| ..+|..| .+.| |+|++++...
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L--~~~g--~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAML--ARAG--FDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHH--HHCC--CeEEEEEeCC
Confidence 35799999888877 3567889 8899 9999998754
No 334
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=28.42 E-value=4.1e+02 Score=23.30 Aligned_cols=99 Identities=8% Similarity=0.020 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC----c--cccccccccCCCCeeEEeCCCCCCCCC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN----G--SLFMEKDELRDCKIVPYNVESGLPEGF 82 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 82 (454)
++-.|.+.+..+.|=....+.+|-+. ..+| ++|.++-.-... + .+++ ++ ++.+.....++....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra--~g~G--~~V~ivQFlKg~~~~GE~~~l~~----l~--~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA--VGHG--KKVGVVQFIKGAWSTGERNLLEF----GG--GVEFHVMGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH--HHCC--CeEEEEEEecCCCccCHHHHHhc----CC--CcEEEECCCCCcccC
Confidence 45688888999999999999999998 7899 999988653221 1 1121 22 688887765433221
Q ss_pred CCCCCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCch
Q 012893 83 RFTGNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFL 127 (454)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~ 127 (454)
.+..+.. ......+... .+.+. ....|+||-|-+.
T Consensus 91 ---~~~~e~~----~~~~~~~~~a-~~~l~--~~~ydlvVLDEi~ 125 (191)
T PRK05986 91 ---QDRERDI----AAAREGWEEA-KRMLA--DESYDLVVLDELT 125 (191)
T ss_pred ---CCcHHHH----HHHHHHHHHH-HHHHh--CCCCCEEEEehhh
Confidence 1111111 1121222222 22333 3488999999765
No 335
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.10 E-value=96 Score=31.94 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=22.3
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
+||+||.+.. ...+|+++|||++.++.
T Consensus 364 ~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 8999999963 45689999999998753
No 336
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=27.93 E-value=87 Score=30.79 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCc
Q 012893 284 TPPRAEVIALAEALEAIGFPFLWSFRGNA 312 (454)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (454)
..+.+.+..+++.+++.+..+|+.+|+..
T Consensus 69 ~p~~~~v~~~~~~~~~~~~D~IiaiGGGS 97 (379)
T TIGR02638 69 NPTITVVKAGVAAFKASGADYLIAIGGGS 97 (379)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 33455556666666666666666666653
No 337
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=27.84 E-value=1.7e+02 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.2
Q ss_pred ceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhc
Q 012893 346 CVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWG 388 (454)
Q Consensus 346 ~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G 388 (454)
++.++|||+.... .+.-|-.++|.. ..+.+++. |
T Consensus 270 ~~~~~HgGYD~~~---an~D~N~v~PlD-----~LreL~~E-G 303 (349)
T PF07355_consen 270 DYMTIHGGYDPAY---ANEDPNRVFPLD-----RLRELEKE-G 303 (349)
T ss_pred ceEeeccccChhH---hccCCCeeeeHH-----HHHHHHHc-C
Confidence 3999999987654 347788888853 34455555 5
No 338
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.64 E-value=2.2e+02 Score=26.60 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHc---
Q 012893 287 RAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITG--- 363 (454)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~--- 363 (454)
...+..+...+...+..+.+....... .. ..+. . ...- ...+++|.-||=||+.|++..
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~-~~-~~~~-------------~-~~~~--~~~d~ivv~GGDGTl~~v~~~l~~ 79 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKG-DA-ARYV-------------E-EARK--FGVDTVIAGGGDGTINEVVNALIQ 79 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcc-cH-HHHH-------------H-HHHh--cCCCEEEEECCCChHHHHHHHHhc
Confidence 455667788888888766544332210 00 1110 0 0111 123499999999999997643
Q ss_pred --CCCee-cccc
Q 012893 364 --GVPMV-CRPV 372 (454)
Q Consensus 364 --GvP~i-~~P~ 372 (454)
..|.+ ++|.
T Consensus 80 ~~~~~~lgiiP~ 91 (293)
T TIGR00147 80 LDDIPALGILPL 91 (293)
T ss_pred CCCCCcEEEEcC
Confidence 34555 5886
No 339
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.57 E-value=5.2e+02 Score=27.08 Aligned_cols=101 Identities=7% Similarity=-0.058 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHH--cCCCee
Q 012893 291 IALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGIT--GGVPMV 368 (454)
Q Consensus 291 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~--~GvP~i 368 (454)
..+-..++..+.++|..+|.....--..++...+.-++- -+-+++..||+|.+...-. ++.+..
T Consensus 445 aaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~lp--------------viivV~NN~~~~~i~~~q~~~~~~~~~ 510 (587)
T PRK06965 445 YAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTP--------------VKIISLNNRYLGMVRQWQEIEYSKRYS 510 (587)
T ss_pred HHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCC--------------eEEEEEECCcchHHHHHHHHhcCCCcc
Confidence 345556666777888888765321111111111111111 1227889999988764322 232211
Q ss_pred ccccccc-hhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 369 CRPVFAD-QALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 369 ~~P~~~D-Q~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
.. ..+ .+..+...+.. |+- ..++ +.++|.+++.+.+.
T Consensus 511 ~~--~~~~~~d~~~iA~a~-G~~~~~v~----~~~eL~~al~~a~~ 549 (587)
T PRK06965 511 HS--YMDALPDFVKLAEAY-GHVGMRIE----KTSDVEPALREALR 549 (587)
T ss_pred cc--CCCCCCCHHHHHHHC-CCEEEEEC----CHHHHHHHHHHHHh
Confidence 10 111 24667777777 763 3333 68889888888775
No 340
>PRK13059 putative lipid kinase; Reviewed
Probab=27.55 E-value=2.1e+02 Score=26.92 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHH---H--
Q 012893 288 AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGI---T-- 362 (454)
Q Consensus 288 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal---~-- 362 (454)
..+..+...+.+.+..+.+....... . .+ .. ....- ...+++|.-||=||+.|++ .
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~-~-~~-~~--------------~~~~~--~~~d~vi~~GGDGTv~evv~gl~~~ 79 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEY-D-LK-NA--------------FKDID--ESYKYILIAGGDGTVDNVVNAMKKL 79 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcc-h-HH-HH--------------HHHhh--cCCCEEEEECCccHHHHHHHHHHhc
Confidence 45567778888888775543332110 0 00 00 01111 2235999999999998885 2
Q ss_pred -cCCCeecccc
Q 012893 363 -GGVPMVCRPV 372 (454)
Q Consensus 363 -~GvP~i~~P~ 372 (454)
.++|+-++|.
T Consensus 80 ~~~~~lgviP~ 90 (295)
T PRK13059 80 NIDLPIGILPV 90 (295)
T ss_pred CCCCcEEEECC
Confidence 3588899996
No 341
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.54 E-value=4.8e+02 Score=27.27 Aligned_cols=119 Identities=11% Similarity=-0.037 Sum_probs=60.4
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecC
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHC 352 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~Hg 352 (454)
|.-|++.|+.+.+--..=..+-.+++..+.++|..+|.....--..++...+..++-+ +-+++..|
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v--------------~ivV~NN~ 476 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPV--------------LVLNLNNR 476 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCe--------------EEEEEeCc
Confidence 3345544433332223334555666667778888877654211111111111111111 12788999
Q ss_pred CchhHHHH--HHcCCCeecccccc-chhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 353 GWNSTIEG--ITGGVPMVCRPVFA-DQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 353 G~gsv~ea--l~~GvP~i~~P~~~-DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
|+|.+..- ..++.+.- .... ..+..+...+.. |+- .++ -+.++|.+++.+.++
T Consensus 477 ~yg~i~~~q~~~~~~~~~--~~~~~~~~d~~~iA~a~-G~~g~~v----~~~~eL~~al~~a~~ 533 (574)
T PRK07979 477 YLGMVKQWQDMIYSGRHS--QSYMQSLPDFVRLAEAY-GHVGIQI----SHPDELESKLSEALE 533 (574)
T ss_pred hhhHHHHHHHHhcCCccc--cccCCCCCCHHHHHHHC-CCEEEEE----CCHHHHHHHHHHHHh
Confidence 99986543 22232210 0111 125677777777 753 333 278899999888875
No 342
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=27.45 E-value=1.3e+02 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=19.7
Q ss_pred CcceEEecCCchhHHHH-----HHc--CCCeeccccc
Q 012893 344 SVCVFVTHCGWNSTIEG-----ITG--GVPMVCRPVF 373 (454)
Q Consensus 344 ~~~~~I~HgG~gsv~ea-----l~~--GvP~i~~P~~ 373 (454)
.++++|-=|| ||+... +.+ |+|++.+|..
T Consensus 78 ~~d~IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 78 EVDAVIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CcCEEEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3458888888 444433 223 9999999974
No 343
>PRK13337 putative lipid kinase; Reviewed
Probab=27.43 E-value=1.9e+02 Score=27.28 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=22.5
Q ss_pred cceEEecCCchhHHHHHHc------CCCeecccc
Q 012893 345 VCVFVTHCGWNSTIEGITG------GVPMVCRPV 372 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~------GvP~i~~P~ 372 (454)
.+++|.-||=||+.|++.. ..|+-++|.
T Consensus 58 ~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 58 FDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 3599999999999999862 347779996
No 344
>PRK10867 signal recognition particle protein; Provisional
Probab=27.43 E-value=3.2e+02 Score=27.44 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=34.2
Q ss_pred cEE-EEEcCCCccCHHHHHHHHHHHhhhcC-CCcEEEEEEeCCCcCcc
Q 012893 11 RHV-AVLAFPFGTHAAPLLDLVRRLSEAAL-EEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 11 ~~i-l~~~~~~~GH~~p~l~la~~L~~~~~-G~~h~V~~~~~~~~~~~ 56 (454)
+++ +|+..++-|=..=+..||..| ++. | +.|.+++...++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l--~~~~G--~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYL--KKKKK--KKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH--HHhcC--CcEEEEEccccchH
Confidence 455 555556999999999999999 778 9 99999999876653
No 345
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=27.41 E-value=38 Score=29.38 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=33.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFM 59 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~ 59 (454)
||++...|+.|-+.- ..+.++| ++.| ++|.++.++...+.+..
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L--~~~g--~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVL--KEAG--VEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHH--HHCC--CEEEEEECccHHHHHHH
Confidence 466666677776654 8999999 9999 99999999877766643
No 346
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.32 E-value=1.8e+02 Score=30.58 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.3
Q ss_pred cceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 345 VCVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 345 ~~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
.+++++|.|-| .+.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34888898754 7899999999999884
No 347
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.05 E-value=94 Score=30.77 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=8.4
Q ss_pred CCCeeccccc
Q 012893 364 GVPMVCRPVF 373 (454)
Q Consensus 364 GvP~i~~P~~ 373 (454)
.+|+|.+|..
T Consensus 148 ~~P~iaIPTt 157 (395)
T PRK15454 148 RLPLIAIPTT 157 (395)
T ss_pred CCCEEEECCC
Confidence 5799999974
No 348
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.96 E-value=1.1e+02 Score=30.02 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=9.1
Q ss_pred cCCCeeccccc
Q 012893 363 GGVPMVCRPVF 373 (454)
Q Consensus 363 ~GvP~i~~P~~ 373 (454)
.++|+|++|..
T Consensus 121 ~~~P~i~IPTt 131 (375)
T cd08194 121 PGLPLIAIPTT 131 (375)
T ss_pred CCCCEEEECCC
Confidence 36899999975
No 349
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.93 E-value=1.2e+02 Score=22.96 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=24.5
Q ss_pred CccEE--EEcCch----hhHHHHHHHcCCCeEEEeCchhhh
Q 012893 117 EISCL--ITDAFL----WFAAEMAEEMRVPWIAYWTAGPRS 151 (454)
Q Consensus 117 ~pD~v--i~d~~~----~~~~~~A~~lgiP~v~~~~~~~~~ 151 (454)
++|+| ++|+.+ ..+...|++.|+|++.........
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 66876 577543 455568899999999987544433
No 350
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.92 E-value=2.9e+02 Score=27.62 Aligned_cols=60 Identities=5% Similarity=0.026 Sum_probs=41.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccC-CCCeeEEeC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELR-DCKIVPYNV 74 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 74 (454)
.-|+++--=+.|-++-+-.||+.| +++| +.|.+++...++.-....+-.+. ..+++|++.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~l--kk~~--~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYL--KKKG--KKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHH--HHcC--CceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 345555556999999999999999 8899 99999999877753222110000 036777766
No 351
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=26.81 E-value=63 Score=30.68 Aligned_cols=41 Identities=12% Similarity=-0.069 Sum_probs=33.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 11 RHVAVLAF-PFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 11 ~~il~~~~-~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
||++|+.. |+-|=..=..++|..+ .++| ++|.+++......
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~--A~~G--~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALAL--ARRG--KRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHH--HHTT--S-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHH--hhCC--CCeeEeecCCCcc
Confidence 46777666 7999999999999999 8899 9999999876543
No 352
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=26.75 E-value=4e+02 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcC--CCcEEEEEEeC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAAL--EEEVTFSFFST 50 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~--G~~h~V~~~~~ 50 (454)
||||++-.+++.| +|+++| ++. | ++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l--~~s~~g--~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEAL--EKSTKG--YKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHH--HhCCCC--CEEEEEEC
Confidence 6899998888877 578888 665 8 88888755
No 353
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=26.59 E-value=3.2e+02 Score=22.79 Aligned_cols=28 Identities=7% Similarity=0.029 Sum_probs=24.3
Q ss_pred cCCCccCHHHHHHHHHHHhhhcCCCcEEEEEE
Q 012893 17 AFPFGTHAAPLLDLVRRLSEAALEEEVTFSFF 48 (454)
Q Consensus 17 ~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~ 48 (454)
+.++-|-..=.+.|++.| +++| .+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l--~~~g--~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKL--KKAG--YSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHH--HHCC--CcEEEE
Confidence 346788899999999999 8999 999885
No 354
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.58 E-value=67 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=30.0
Q ss_pred hhcccCcceEEecCCchhHHHHHH----cCCCeeccccccc
Q 012893 339 ILEHSSVCVFVTHCGWNSTIEGIT----GGVPMVCRPVFAD 375 (454)
Q Consensus 339 ll~~~~~~~~I~HgG~gsv~eal~----~GvP~i~~P~~~D 375 (454)
.|..-.++.+|.=||.||...|.. .++|+|.+|-..|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 455567789999999999987754 7999999997544
No 355
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.50 E-value=96 Score=31.02 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=25.1
Q ss_pred HHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 109 KAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 109 ~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
++++.. +||++|.+.. ...+|+++|||++.+..
T Consensus 363 ~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~~ 395 (421)
T cd01976 363 EFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMHS 395 (421)
T ss_pred HHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCCc
Confidence 344444 9999999965 45789999999987653
No 356
>PRK05858 hypothetical protein; Provisional
Probab=26.42 E-value=5.7e+02 Score=26.46 Aligned_cols=111 Identities=18% Similarity=0.089 Sum_probs=58.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHH
Q 012893 279 FGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTI 358 (454)
Q Consensus 279 ~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~ 358 (454)
+||++.. .=..+-..+...+.++|..+|.....--..++..-+..|+ | -+-+++..||+|.+.
T Consensus 406 ~gsmG~~---lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~l------p--------i~ivV~NN~~y~~~~ 468 (542)
T PRK05858 406 FGCLGTG---PGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNL------P--------VVSVIGNNGIWGLEK 468 (542)
T ss_pred ccccccc---hhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCC------C--------EEEEEEeCCchhhHH
Confidence 4566532 2223455566677888888886542111111111111111 1 122788999998765
Q ss_pred HHH--HcCCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhcC
Q 012893 359 EGI--TGGVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 359 eal--~~GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
+.. .+|.+... ........+...+.. |+ |..++ +.++|.+++++.++.
T Consensus 469 ~~~~~~~~~~~~~--~~~~~~d~~~lA~a~-G~~~~~v~----~~~eL~~al~~a~~~ 519 (542)
T PRK05858 469 HPMEALYGYDVAA--DLRPGTRYDEVVRAL-GGHGELVT----VPAELGPALERAFAS 519 (542)
T ss_pred HHHHHhcCCcccc--ccCCCCCHHHHHHHC-CCeEEEeC----CHHHHHHHHHHHHhC
Confidence 432 23433211 011235677777777 76 23333 788999999887753
No 357
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.35 E-value=1e+02 Score=29.81 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=22.3
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
..|++|+. ..+...+|..+|+|+|.++.
T Consensus 262 ~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 45999987 33566899999999999864
No 358
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=26.29 E-value=1.4e+02 Score=31.28 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeec--------cC--hHhhhcccCcceEEecCCch---
Q 012893 289 EVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPW--------AP--QLKILEHSSVCVFVTHCGWN--- 355 (454)
Q Consensus 289 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~--------vp--~~~ll~~~~~~~~I~HgG~g--- 355 (454)
.-+.+++.|++.|.+.|+...+.....+-+.+.+ .++..+.- .- +..+-.+ .+++++|.|-|
T Consensus 8 ~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~---~~i~~i~~rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~n 82 (588)
T PRK07525 8 PSEAFVETLQAHGITHAFGIIGSAFMDASDLFPP---AGIRFIDVAHEQNAGHMADGYTRVTGR--MGMVIGQNGPGITN 82 (588)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhc---cCCCEEEecCHHHHHHHHHHHHHHhCC--CEEEEEcCCccHHH
Confidence 3456777777777777777776543323222211 12322211 11 1111222 34899998855
Q ss_pred ---hHHHHHHcCCCeeccc
Q 012893 356 ---STIEGITGGVPMVCRP 371 (454)
Q Consensus 356 ---sv~eal~~GvP~i~~P 371 (454)
.+.+|...++|+|++.
T Consensus 83 ~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 83 FVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred HHHHHHHHhhcCCCEEEEe
Confidence 7788999999999885
No 359
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.23 E-value=88 Score=25.52 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC
Q 012893 9 QRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN 54 (454)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~ 54 (454)
+++||++...+.-+|-...-=++..| +..| ++|...+.....
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l--~~~G--feVi~lg~~~s~ 42 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAY--ADLG--FDVDVGPLFQTP 42 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHH--HhCC--cEEEECCCCCCH
Confidence 46899999999999999998889999 8999 999998865433
No 360
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=26.13 E-value=97 Score=27.87 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=33.9
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 10 RRHVAVLAFP--FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 10 ~~~il~~~~~--~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
|.+|++++++ +-|-..-...|+.+| .++| ++|.++-...-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aL--A~~G--kKv~liD~DiG 42 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTAL--AQLG--KKVVLIDFDIG 42 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHH--HHcC--CeEEEEecCcC
Confidence 3478888885 889999999999999 8899 99999877543
No 361
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=26.09 E-value=5.2e+02 Score=26.82 Aligned_cols=122 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEe
Q 012893 271 NASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVT 350 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~ 350 (454)
.+|.-|++.|+.+.+-...-..+-..++..+.++++.+|.....--..++......++-+.= +++.
T Consensus 400 ~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~--------------vv~N 465 (558)
T TIGR00118 400 RKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKI--------------LILN 465 (558)
T ss_pred CCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEE--------------EEEe
Q ss_pred cCCchhHH--HHHHcCCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 351 HCGWNSTI--EGITGGVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 351 HgG~gsv~--eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+||++++. +-..++.+.... ....++..+...+.. |+ |..+. +.++|.+++.+.++
T Consensus 466 N~~~~~~~~~q~~~~~~~~~~~-~~~~~~d~~~~a~a~-G~~~~~v~----~~~~l~~al~~a~~ 524 (558)
T TIGR00118 466 NRYLGMVRQWQELFYEERYSHT-HMGSLPDFVKLAEAY-GIKGIRIE----KPEELDEKLKEALS 524 (558)
T ss_pred CCchHHHHHHHHHhcCCceeec-cCCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=25.95 E-value=3.3e+02 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=32.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN 54 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~ 54 (454)
.+|=+.-.|+-|-=.-.=.|++.| .++| |+|-+++-....
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l--~~~G--~rVaVlAVDPSS 91 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGREL--RERG--HRVAVLAVDPSS 91 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHH--HHCC--cEEEEEEECCCC
Confidence 345566668999999999999999 9999 999999865443
No 363
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=25.90 E-value=3.9e+02 Score=23.81 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=52.1
Q ss_pred CCccCHHHHH---HHHHHHhhhcCCCcEEEEEEeCCCcCc-cccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHH
Q 012893 19 PFGTHAAPLL---DLVRRLSEAALEEEVTFSFFSTAQSNG-SLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEH 94 (454)
Q Consensus 19 ~~~GH~~p~l---~la~~L~~~~~G~~h~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (454)
+=.||+.+.+ -+++-| +.+| ++|.|++.-.... .+... .. . . ......
T Consensus 34 ~HiGH~r~~v~~Dvl~R~l--r~~G--~~V~~~~g~dd~g~ki~~~---A~--~---------------~----g~~p~e 85 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYL--EDLG--YKVRYVQNITDIDDKIIKR---AR--E---------------E----GLSWKE 85 (213)
T ss_pred cccccchhHHHHHHHHHHH--HhcC--CeeEEEeecCCCCCHHHHH---HH--H---------------c----CCCHHH
Confidence 3568988877 468888 8899 9999998754433 33222 00 0 0 111222
Q ss_pred HHHhchHHHHHHHHHHHHhcCCC-ccEEEEcCchhhHHHHHHHcCCCeEE
Q 012893 95 FLKATPGNFVRALEKAVAKTGLE-ISCLITDAFLWFAAEMAEEMRVPWIA 143 (454)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~-pD~vi~d~~~~~~~~~A~~lgiP~v~ 143 (454)
+.+.....+++.++. +... ||..+...+.-++.++-+.+|-|+=.
T Consensus 86 ~~~~~~~~f~~~~~~----l~i~~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 86 VADYYTKEFFEDMKA----LNVLPPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred HHHHHHHHHHHHHHH----cCCCCCCcceeehhHHHHHHHHHHcCCCccE
Confidence 322233333343333 3334 37776666666776777888866543
No 364
>PTZ00445 p36-lilke protein; Provisional
Probab=25.74 E-value=2.4e+02 Score=25.19 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=23.8
Q ss_pred cCHHH-HHHHHHHHhhhcCCCcEEEEEEeCCCcCc
Q 012893 22 THAAP-LLDLVRRLSEAALEEEVTFSFFSTAQSNG 55 (454)
Q Consensus 22 GH~~p-~l~la~~L~~~~~G~~h~V~~~~~~~~~~ 55 (454)
+|+.| +..+.++| .+.| -.|+++|..+...
T Consensus 74 ~~~tpefk~~~~~l--~~~~--I~v~VVTfSd~~~ 104 (219)
T PTZ00445 74 TSVTPDFKILGKRL--KNSN--IKISVVTFSDKEL 104 (219)
T ss_pred ccCCHHHHHHHHHH--HHCC--CeEEEEEccchhh
Confidence 34566 67889999 8999 9999999865533
No 365
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=25.68 E-value=3.5e+02 Score=26.64 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=49.7
Q ss_pred HhhhcccCcceEEecCCchhHHHHHHcCCCeeccccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhcCc
Q 012893 337 LKILEHSSVCVFVTHCGWNSTIEGITGGVPMVCRPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLSSE 414 (454)
Q Consensus 337 ~~ll~~~~~~~~I~HgG~gsv~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~~~ 414 (454)
..++.+++ ++|. .=.=++.=|++.|+|.|.+- =|+-+....++. |+- ..++....+.+.+.+.+.+.+.+.
T Consensus 280 ~~~l~~~d--l~Vg-~R~HsaI~al~~g~p~i~i~---Y~~K~~~l~~~~-gl~~~~~~i~~~~~~~l~~~~~e~~~~~ 351 (385)
T COG2327 280 GGILAACD--LIVG-MRLHSAIMALAFGVPAIAIA---YDPKVRGLMQDL-GLPGFAIDIDPLDAEILSAVVLERLTKL 351 (385)
T ss_pred HHHhccCc--eEEe-ehhHHHHHHHhcCCCeEEEe---ecHHHHHHHHHc-CCCcccccCCCCchHHHHHHHHHHHhcc
Confidence 45676665 6662 22336777899999999883 344555777777 765 335666789999999999888764
No 366
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.65 E-value=1.8e+02 Score=22.73 Aligned_cols=86 Identities=17% Similarity=0.088 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHHHhchHH
Q 012893 23 HAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFLKATPGN 102 (454)
Q Consensus 23 H~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (454)
+=.-++.+++.| .+.| |++. +++...+.+++. |++...+-.. +.+ ...+
T Consensus 10 ~K~~~~~~a~~l--~~~G--~~i~--AT~gTa~~L~~~-------Gi~~~~v~~~-~~~-----------------g~~~ 58 (112)
T cd00532 10 VKAMLVDLAPKL--SSDG--FPLF--ATGGTSRVLADA-------GIPVRAVSKR-HED-----------------GEPT 58 (112)
T ss_pred cHHHHHHHHHHH--HHCC--CEEE--ECcHHHHHHHHc-------CCceEEEEec-CCC-----------------CCcH
Confidence 445678999999 8889 8873 444555566655 6766554211 000 1122
Q ss_pred HHHHHHHHHHhcCCCccEEEEcC--c--------hhhHHHHHHHcCCCeEEE
Q 012893 103 FVRALEKAVAKTGLEISCLITDA--F--------LWFAAEMAEEMRVPWIAY 144 (454)
Q Consensus 103 ~~~~~~~~~~~~~~~pD~vi~d~--~--------~~~~~~~A~~lgiP~v~~ 144 (454)
+ ..+++. ..+.|+||.-. . .+....+|-..|||+++-
T Consensus 59 i----~~~i~~-~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 59 V----DAAIAE-KGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred H----HHHHhC-CCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 2 222232 03788888632 1 234455899999999983
No 367
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.65 E-value=7.3e+02 Score=25.31 Aligned_cols=137 Identities=12% Similarity=0.090 Sum_probs=78.6
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCC-ceEeec-------cChHhhhcc
Q 012893 271 NASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSY-GKVVPW-------APQLKILEH 342 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~n-v~v~~~-------vp~~~ll~~ 342 (454)
.+.+++.-.||+.. -....+++.+.+.|+.+-++........+...-.+....+ |+.--| +.|..+...
T Consensus 70 ~k~IllgVtGsIAa---yka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~~ls~~~V~~d~~~~~~~~~~~Hi~la~~ 146 (475)
T PRK13982 70 SKRVTLIIGGGIAA---YKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSGQRVYTDLFDPESEFDAGHIRLARD 146 (475)
T ss_pred CCEEEEEEccHHHH---HHHHHHHHHHHhCcCEEEEEECcCHHHHhhHHHHHHhcCCceEecCCCcccccCccchhhhhh
Confidence 34466666666642 3445677777888887766666543222221111222222 332112 335555555
Q ss_pred cCcceEEecCCchhHH-------------HHHHcCCCeecccccc----chh---HHHHHHHHhhceeecCcC-------
Q 012893 343 SSVCVFVTHCGWNSTI-------------EGITGGVPMVCRPVFA----DQA---LNQRIIETAWGIGVGVXG------- 395 (454)
Q Consensus 343 ~~~~~~I~HgG~gsv~-------------eal~~GvP~i~~P~~~----DQ~---~nA~~v~~~~G~G~~~~~------- 395 (454)
++ .++|.-+-+||+. -++..++|++++|-.. +.+ .|...+.+. |+-+.-+.
T Consensus 147 aD-~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~-G~~vi~P~~g~lA~~ 224 (475)
T PRK13982 147 CD-LIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRD-GVHMIGPNAGEMAER 224 (475)
T ss_pred cC-EEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccC
Confidence 66 4677777766543 3467799999999643 344 677888887 76554321
Q ss_pred ------CCCCHHHHHHHHHHHhc
Q 012893 396 ------EKFTKDETVNALKQVLS 412 (454)
Q Consensus 396 ------~~~~~~~l~~av~~vl~ 412 (454)
.-..+++|...+.+++.
T Consensus 225 g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 225 GEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHh
Confidence 11356788888877664
No 368
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=25.58 E-value=45 Score=34.38 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=25.0
Q ss_pred CCCccEEEEcCchhhHHHHHHHcCCCeEEEeCc
Q 012893 115 GLEISCLITDAFLWFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 115 ~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~~ 147 (454)
..+.++||+|.. +..+|+++|++.|.+.+.
T Consensus 143 ~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 143 ARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 458999999964 458999999999998763
No 369
>PRK07773 replicative DNA helicase; Validated
Probab=25.53 E-value=3e+02 Score=30.63 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSL 57 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~ 57 (454)
=|++..-|+.|=..-++.+|...+ .+.| ..|.|++.+...+.+
T Consensus 219 livIagrPg~GKT~fal~ia~~~a-~~~~--~~V~~fSlEms~~ql 261 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCA-IRHR--LAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHH-HhcC--CeEEEEecCCCHHHH
Confidence 467777789999999999999883 2458 899999987666543
No 370
>PRK11269 glyoxylate carboligase; Provisional
Probab=25.48 E-value=4.8e+02 Score=27.40 Aligned_cols=101 Identities=12% Similarity=-0.057 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHH--HcCCCeec
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGI--TGGVPMVC 369 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal--~~GvP~i~ 369 (454)
.+-..++..+.++|..+|.....--..++......++ +-+-+++..+|+|.+...- +.+.+-..
T Consensus 428 AiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~l--------------pv~~vV~NN~~~g~i~~~~~~~~~~~~~~ 493 (591)
T PRK11269 428 ALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNL--------------PYIHVLVNNAYLGLIRQAQRAFDMDYCVQ 493 (591)
T ss_pred HHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCC--------------CeEEEEEeCCchhHHHHHHHHhccCccce
Confidence 4444555567788888886542111111111111111 1123788999998765432 22322211
Q ss_pred cccc--c------chhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHh
Q 012893 370 RPVF--A------DQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVL 411 (454)
Q Consensus 370 ~P~~--~------DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl 411 (454)
..+. . -....+...+.. |+ |..+. +.++|.+++++.+
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~----~~~eL~~al~~a~ 539 (591)
T PRK11269 494 LAFENINSPELNGYGVDHVKVAEGL-GCKAIRVF----KPEDIAPALEQAK 539 (591)
T ss_pred eeccccccccccCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHH
Confidence 1000 0 124567777777 75 33332 7899999999877
No 371
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=25.45 E-value=64 Score=31.97 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=38.1
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccc
Q 012893 7 STQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFM 59 (454)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~ 59 (454)
+.++.||++...++.+ .+-...+.+.| ++.| ++|.++.++...+.+..
T Consensus 3 ~l~~k~IllgvTGsia-a~k~~~lv~~L--~~~g--~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 3 MLAGKRIVLGVSGGIA-AYKALELVRRL--RKAG--ADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCCeEEEEEeCHHH-HHHHHHHHHHH--HhCC--CEEEEEECHhHHHHHhH
Confidence 3456789998888774 55789999999 9999 99999999876665543
No 372
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.27 E-value=97 Score=30.28 Aligned_cols=10 Identities=20% Similarity=0.643 Sum_probs=9.0
Q ss_pred CCCeeccccc
Q 012893 364 GVPMVCRPVF 373 (454)
Q Consensus 364 GvP~i~~P~~ 373 (454)
++|+|++|..
T Consensus 122 ~~p~i~VPTt 131 (370)
T cd08551 122 ALPLIAIPTT 131 (370)
T ss_pred CCCEEEecCC
Confidence 7999999985
No 373
>PRK13055 putative lipid kinase; Reviewed
Probab=25.22 E-value=3e+02 Score=26.43 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.2
Q ss_pred ceEEecCCchhHHHHHHc------CCCeecccc
Q 012893 346 CVFVTHCGWNSTIEGITG------GVPMVCRPV 372 (454)
Q Consensus 346 ~~~I~HgG~gsv~eal~~------GvP~i~~P~ 372 (454)
+++|--||=||+.|++.. .+|+-++|.
T Consensus 61 d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 61 DLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 489999999999998743 467889996
No 374
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.21 E-value=59 Score=30.88 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=23.2
Q ss_pred cceEEecCCchhHHHHHHc----CCCeecccc
Q 012893 345 VCVFVTHCGWNSTIEGITG----GVPMVCRPV 372 (454)
Q Consensus 345 ~~~~I~HgG~gsv~eal~~----GvP~i~~P~ 372 (454)
++++|+-||-||+.+++.. ++|++.+..
T Consensus 58 ~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 58 IDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3499999999999999864 788887754
No 375
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=25.15 E-value=4.9e+02 Score=27.45 Aligned_cols=61 Identities=3% Similarity=-0.017 Sum_probs=36.0
Q ss_pred eEEecCCchhHHHH--HHcCCCeecc--ccccc-hhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIEG--ITGGVPMVCR--PVFAD-QALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~ea--l~~GvP~i~~--P~~~D-Q~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++..+|+|.+..- +.++-+.... ....+ .+..+...+.. |+- .++. +.++|.+++.+.++
T Consensus 497 vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~----~~~eL~~al~~a~~ 563 (612)
T PRK07789 497 ALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCE----REEDVDAVIEKARA 563 (612)
T ss_pred EEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 78999999977532 3333221111 11111 24677777777 753 2232 68899999988875
No 376
>PRK08322 acetolactate synthase; Reviewed
Probab=25.11 E-value=1.3e+02 Score=31.21 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.6
Q ss_pred cceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 345 VCVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 345 ~~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 34889998855 7899999999999884
No 377
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.05 E-value=1.4e+02 Score=31.20 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.6
Q ss_pred cceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 345 VCVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 345 ~~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
.+++++|.|-| .+.+|.+.++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45899998865 6889999999999874
No 378
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=25.01 E-value=1.2e+02 Score=28.86 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHH---
Q 012893 286 PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGIT--- 362 (454)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~--- 362 (454)
..+..+.+.+.+.+.|...-+..+.+.. |. +.-++ +||+-||-||+.-|..
T Consensus 73 hkn~~~~~~~~l~k~giesklv~R~~ls----------------------q~--i~waD--~VisvGGDGTfL~Aasrv~ 126 (395)
T KOG4180|consen 73 HKNAIKFCQEELSKAGIESKLVSRNDLS----------------------QP--IRWAD--MVISVGGDGTFLLAASRVI 126 (395)
T ss_pred HHHHHHHHHHHHhhCCcceeeeehhhcc----------------------Cc--Cchhh--EEEEecCccceeehhhhhh
Confidence 3566677888888888765555544321 11 22255 9999999999988765
Q ss_pred -cCCCeecc
Q 012893 363 -GGVPMVCR 370 (454)
Q Consensus 363 -~GvP~i~~ 370 (454)
--+|+|.+
T Consensus 127 ~~~~PViGv 135 (395)
T KOG4180|consen 127 DDSKPVIGV 135 (395)
T ss_pred ccCCceeee
Confidence 56888765
No 379
>PLN02939 transferase, transferring glycosyl groups
Probab=24.76 E-value=1.1e+02 Score=33.83 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCC------CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 8 TQRRHVAVLAFP------FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 8 ~~~~~il~~~~~------~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
.+.|||||++.- +.|=-.-.-.|.++| ++.| |+|.++++..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL--~~~G--hdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKAL--QKKG--HLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHH--HHcC--CeEEEEeCCC
Confidence 567999998752 333333445789999 8899 9999999854
No 380
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=24.75 E-value=1.5e+02 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCccEEEEcCchh---hHHHHHHHcCCCeEEEeC
Q 012893 105 RALEKAVAKTGLEISCLITDAFLW---FAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 105 ~~~~~~~~~~~~~pD~vi~d~~~~---~~~~~A~~lgiP~v~~~~ 146 (454)
..+.++++.. +||+|+...-.. .+..+|.++|.|++.-..
T Consensus 80 ~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 80 DALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 3344455544 899998774332 455799999999998654
No 381
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=24.75 E-value=95 Score=28.34 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=23.6
Q ss_pred EEEEEcCC------CccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 12 HVAVLAFP------FGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 12 ~il~~~~~------~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
|||++++. +.|=-.-+-.|+++| ++.| |+|+++++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL--~~~G--~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKAL--AKQG--HDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHH--HHTT---EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHH--HhcC--CeEEEEEccc
Confidence 56666552 223334456889999 8999 9999999853
No 382
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=24.72 E-value=2e+02 Score=29.36 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=38.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCC--CCCCCCC
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVE--SGLPEGF 82 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~ 82 (454)
+.++++...- =.-++.+|+.| .+.| +++. ++....+.+++. |++...+. -++|+..
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L--~~lG--feI~--AT~GTak~L~e~-------GI~v~~V~k~TgfpEil 61 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKAL--VELG--VEIL--STGGTAKLLAEA-------GIPVTEVSDVTGFPEIL 61 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHH--HHCC--CEEE--EcchHHHHHHHC-------CCeeEEeecccCCchhc
Confidence 3567776665 45588999999 8889 8873 555666677777 78777664 3555543
No 383
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=24.66 E-value=2.1e+02 Score=22.40 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHHHhchHH
Q 012893 23 HAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFLKATPGN 102 (454)
Q Consensus 23 H~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (454)
+=.-++.+++.| .+.| ++|. +++...+.+.+. |++...+-.....+ ... ...
T Consensus 11 dk~~~~~~a~~l--~~~G--~~i~--aT~gTa~~L~~~-------gi~~~~v~~~~~~~------~~~---------~~~ 62 (116)
T cd01423 11 SKPELLPTAQKL--SKLG--YKLY--ATEGTADFLLEN-------GIPVTPVAWPSEEP------QND---------KPS 62 (116)
T ss_pred cchhHHHHHHHH--HHCC--CEEE--EccHHHHHHHHc-------CCCceEeeeccCCC------CCC---------chh
Confidence 455678999999 8889 8773 454555566655 66555442100000 000 011
Q ss_pred HHHHHHHHHHhcCCCccEEEEcCc---------hhhHHHHHHHcCCCeEE
Q 012893 103 FVRALEKAVAKTGLEISCLITDAF---------LWFAAEMAEEMRVPWIA 143 (454)
Q Consensus 103 ~~~~~~~~~~~~~~~pD~vi~d~~---------~~~~~~~A~~lgiP~v~ 143 (454)
+..++++ .++|+||.... .+.....|-.+|||+++
T Consensus 63 ----i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 63 ----LRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ----HHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 2223333 38899988432 24556689999999974
No 384
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=24.65 E-value=4.5e+02 Score=22.59 Aligned_cols=114 Identities=12% Similarity=0.154 Sum_probs=56.2
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCC-ceEee-------ccChHhhhcccCc
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSY-GKVVP-------WAPQLKILEHSSV 345 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~n-v~v~~-------~vp~~~ll~~~~~ 345 (454)
+++.-.||... -....+++.+.+.++.+-++........+...-.+...++ ++..- .+.+..+...++
T Consensus 3 I~lgvtGs~~a---~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi~l~~~aD- 78 (177)
T TIGR02113 3 ILLAVTGSIAA---YKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDVMDEHDPKVINHIELAKKAD- 78 (177)
T ss_pred EEEEEcCHHHH---HHHHHHHHHHHHCCCEEEEEEChHHHhhccHhhHHHHhCCCeEeeccccccCCCcccceechhhC-
Confidence 44555555542 2233566777777776666655543222221112222222 22111 122333333344
Q ss_pred ceEEecCCchhH---------------HHHHHcCCCeeccccc----cchh---HHHHHHHHhhceeec
Q 012893 346 CVFVTHCGWNST---------------IEGITGGVPMVCRPVF----ADQA---LNQRIIETAWGIGVG 392 (454)
Q Consensus 346 ~~~I~HgG~gsv---------------~eal~~GvP~i~~P~~----~DQ~---~nA~~v~~~~G~G~~ 392 (454)
.++|.-+-.||+ ..|+..++|.+++|-. .+.+ .|-..+++. |+-+.
T Consensus 79 ~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~-G~~vi 146 (177)
T TIGR02113 79 LFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKI-GYQEI 146 (177)
T ss_pred EEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHC-CCEEE
Confidence 467777766643 3333348999999942 3333 466666666 76544
No 385
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.57 E-value=1.2e+02 Score=30.47 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=21.9
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
+||++|.+... ..+|+++|+|++.++
T Consensus 371 ~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 371 PVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred CCCEEEECchh---HHHHHhcCCCEEEec
Confidence 89999999653 578899999999764
No 386
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=24.55 E-value=5.2e+02 Score=27.02 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHc-CCCeecc
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITG-GVPMVCR 370 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~-GvP~i~~ 370 (454)
.+-..++..+.++|..+|.....--..++...+..++-+ +-+|+..||+|.+...... +-+...+
T Consensus 417 AiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi--------------~~VV~NN~~yg~i~~~~~~~~~~~~~~ 482 (575)
T TIGR02720 417 AIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPV--------------INIVFSNCTYGFIKDEQEDTNQPLIGV 482 (575)
T ss_pred HHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCe--------------EEEEEeCCccHHHHHHHHHhCCCcccc
Confidence 445556667778888888654211111111111111111 1267899999987654321 1111111
Q ss_pred ccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHh
Q 012893 371 PVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVL 411 (454)
Q Consensus 371 P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl 411 (454)
..+.+..+...+.. |+- ..++ +.++|.+++++.+
T Consensus 483 --~~~~~df~~iA~a~-G~~~~~v~----~~~el~~al~~a~ 517 (575)
T TIGR02720 483 --DFNDADFAKIAEGV-GAVGFRVN----KIEQLPAVFEQAK 517 (575)
T ss_pred --cCCCCCHHHHHHHC-CCEEEEeC----CHHHHHHHHHHHH
Confidence 12346677777777 743 3333 6788888888877
No 387
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=24.29 E-value=1.2e+02 Score=29.79 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=9.1
Q ss_pred cCCCeeccccc
Q 012893 363 GGVPMVCRPVF 373 (454)
Q Consensus 363 ~GvP~i~~P~~ 373 (454)
-++|+|++|..
T Consensus 130 ~~~p~i~VPTT 140 (382)
T PRK10624 130 PSVPIIAIPTT 140 (382)
T ss_pred CCCCEEEECCC
Confidence 36899999985
No 388
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.20 E-value=5.6e+02 Score=26.75 Aligned_cols=101 Identities=5% Similarity=-0.122 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHH--HcCCCeec
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGI--TGGVPMVC 369 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal--~~GvP~i~ 369 (454)
.+-..++..+.++|..+|.....--..++......++- =+-+++..+|+|.+..-. .++.+.-.
T Consensus 432 AiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lp--------------v~ivV~NN~~y~~i~~~q~~~~~~~~~~ 497 (574)
T PRK06466 432 AMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLP--------------VKIINLNNGALGMVRQWQDMQYEGRHSH 497 (574)
T ss_pred HHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCC--------------eEEEEEeCCccHHHHHHHHHhcCCceee
Confidence 45555666778888888865421111111111111111 122789999999876432 22222110
Q ss_pred cccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 370 RPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 370 ~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
. ...+=+..+...+.. |+- .++. +.++|.+++.+.++
T Consensus 498 ~-~~~~~~d~~~lA~a~-G~~~~~v~----~~~el~~al~~a~~ 535 (574)
T PRK06466 498 S-YMESLPDFVKLAEAY-GHVGIRIT----DLKDLKPKLEEAFA 535 (574)
T ss_pred c-CCCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 0 000114567777777 753 3333 68888888887764
No 389
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.20 E-value=1.3e+02 Score=23.63 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEee-------ccChHhh---hcccCcceEEecCCchhH
Q 012893 288 AEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVP-------WAPQLKI---LEHSSVCVFVTHCGWNST 357 (454)
Q Consensus 288 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~-------~vp~~~l---l~~~~~~~~I~HgG~gsv 357 (454)
.....+++++++.|++++.+...... ... ..+..+.++..+ |+....+ ..... +...|+|+|-.
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~--~s~--~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g--~~~i~pGyg~l 85 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDT--VST--HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEG--ADAIHPGYGFL 85 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGT--TGH--HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTT--ESEEESTSSTT
T ss_pred HHHHHHHHHHHHhCCcceeccCchhc--ccc--cccccccceecCcchhhhhhccHHHHhhHhhhhc--Ccccccccchh
Confidence 34667899999999999988776431 111 112335555544 5554433 33444 77789999876
Q ss_pred HHH
Q 012893 358 IEG 360 (454)
Q Consensus 358 ~ea 360 (454)
.|.
T Consensus 86 se~ 88 (110)
T PF00289_consen 86 SEN 88 (110)
T ss_dssp TTH
T ss_pred HHH
Confidence 665
No 390
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.13 E-value=1.8e+02 Score=27.44 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCcccc-cchhhhhhhCCCceEeeccC---hHhhhcccCcceEEecCC--chhH
Q 012893 284 TPPRAEVIALAEALEAIGFPFLWSFRGNAEEQ-LPKGFLERTKSYGKVVPWAP---QLKILEHSSVCVFVTHCG--WNST 357 (454)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~~~~~~nv~v~~~vp---~~~ll~~~~~~~~I~HgG--~gsv 357 (454)
..+...+..+.+++++.|..+++-+|...... +.. . ...| ....-..+.+++++.|.| ..=.
T Consensus 140 ~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~----------~--~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~ 207 (293)
T COG2159 140 YPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEK----------G--HSDPLYLDDVARKFPELKIVLGHMGEDYPWE 207 (293)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEEeCCCCCCccccc----------C--CCCchHHHHHHHHCCCCcEEEEecCCCCchh
Confidence 33555678899999999999999888653210 000 0 1122 234455678889999999 5555
Q ss_pred HHH
Q 012893 358 IEG 360 (454)
Q Consensus 358 ~ea 360 (454)
.|+
T Consensus 208 ~~a 210 (293)
T COG2159 208 LEA 210 (293)
T ss_pred HHH
Confidence 555
No 391
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=24.12 E-value=7.8e+02 Score=26.47 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=28.5
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHhhhcCCCcEEEEEEeC
Q 012893 12 HVAVLAFP-FGTHAAPLLDLVRRLSEAALEEEVTFSFFST 50 (454)
Q Consensus 12 ~il~~~~~-~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~ 50 (454)
.|++.+.. .-|=..=++.|++.| +++| ++|-++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L--~~~G--~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRAL--ERKG--VKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH--HhCC--CeEEEeCC
Confidence 46666554 689999999999999 9999 99988653
No 392
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=23.96 E-value=1.3e+02 Score=30.26 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.8
Q ss_pred HHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 108 EKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 108 ~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
.++++.. +||++|.+.. ...+|+++|||++.+.
T Consensus 366 ~~~i~~~--~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 366 EDLACAA--GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHhhc--CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 4444444 7999998854 4679999999999864
No 393
>PRK06163 hypothetical protein; Provisional
Probab=23.93 E-value=2.4e+02 Score=24.89 Aligned_cols=105 Identities=19% Similarity=0.094 Sum_probs=54.2
Q ss_pred eeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhH
Q 012893 278 SFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNST 357 (454)
Q Consensus 278 s~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv 357 (454)
.+||++..-+ ..+-.+++..+.++|..+|.....-...++... ..+-. + +-+-+++..+|+|..
T Consensus 55 ~~GsMG~glp---aAiGaalA~p~r~Vv~i~GDG~f~m~~~eL~Ta-------~~~~~----l--pi~ivV~NN~~yg~~ 118 (202)
T PRK06163 55 MLGSMGLAFP---IALGVALAQPKRRVIALEGDGSLLMQLGALGTI-------AALAP----K--NLTIIVMDNGVYQIT 118 (202)
T ss_pred eecccccHHH---HHHHHHHhCCCCeEEEEEcchHHHHHHHHHHHH-------HHhcC----C--CeEEEEEcCCchhhc
Confidence 5888874222 234445566677888887764321000111100 00000 0 112278888888843
Q ss_pred HHHHHcCCCeeccccccchhHHHHHHHHhhcee--ecCcCCCCCHHHHHHHHHHHhc
Q 012893 358 IEGITGGVPMVCRPVFADQALNQRIIETAWGIG--VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 358 ~eal~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G--~~~~~~~~~~~~l~~av~~vl~ 412 (454)
.+.+... ...+..+...+.. |+- ..+. +.++|..++++.++
T Consensus 119 -----~~~~~~~----~~~~Df~~lA~a~-G~~~~~~v~----~~~el~~al~~a~~ 161 (202)
T PRK06163 119 -----GGQPTLT----SQTVDVVAIARGA-GLENSHWAA----DEAHFEALVDQALS 161 (202)
T ss_pred -----CCccCCC----CCCCCHHHHHHHC-CCceEEEeC----CHHHHHHHHHHHHh
Confidence 2222111 1235567777777 872 3333 67888888888764
No 394
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=23.90 E-value=3e+02 Score=25.72 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=21.1
Q ss_pred CCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCc
Q 012893 19 PFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQS 53 (454)
Q Consensus 19 ~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~ 53 (454)
++.|-+-. +|..+| .+.| |+|++++-...
T Consensus 5 GgTGlIG~--~L~~~L--~~~g--h~v~iltR~~~ 33 (297)
T COG1090 5 GGTGLIGR--ALTARL--RKGG--HQVTILTRRPP 33 (297)
T ss_pred ccccchhH--HHHHHH--HhCC--CeEEEEEcCCc
Confidence 45554443 578889 8999 99999997543
No 395
>PRK09620 hypothetical protein; Provisional
Probab=23.89 E-value=76 Score=28.70 Aligned_cols=37 Identities=5% Similarity=-0.039 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccCHHHH------------HHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 11 RHVAVLAFPFGTHAAPL------------LDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~------------l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
.|||+...|+.=.+.|. ..||++| .++| ++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L--~~~G--a~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEEL--ISKG--AHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHH--HHCC--CeEEEEeCC
Confidence 57777777665554443 4789999 8899 999999765
No 396
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=23.84 E-value=98 Score=27.53 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCccEEEEcCchh-------hHHHHHHHcCCCeEEEe
Q 012893 107 LEKAVAKTGLEISCLITDAFLW-------FAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 107 ~~~~~~~~~~~pD~vi~d~~~~-------~~~~~A~~lgiP~v~~~ 145 (454)
+.+.++.+...||+|+.|.... .|..+--.+|+|+|-+.
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 3334444455799999995532 34455567788888874
No 397
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=23.76 E-value=1.6e+02 Score=25.63 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=35.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCC--CCCCCC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVE--SGLPEG 81 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~ 81 (454)
|+++...- =.-.+.+|+.| .+.| +++. ++....+.+++. |++...+. -++|+.
T Consensus 2 ~vLISVsD----K~~l~~lAk~L--~~lG--f~I~--AT~GTAk~L~e~-------GI~v~~V~k~TgfpE~ 56 (187)
T cd01421 2 RALISVSD----KTGLVEFAKEL--VELG--VEIL--STGGTAKFLKEA-------GIPVTDVSDITGFPEI 56 (187)
T ss_pred EEEEEEeC----cccHHHHHHHH--HHCC--CEEE--EccHHHHHHHHc-------CCeEEEhhhccCCcHh
Confidence 45555443 34578999999 8899 8874 454555667666 78777764 455544
No 398
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=23.70 E-value=80 Score=29.64 Aligned_cols=72 Identities=15% Similarity=0.293 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHHc--
Q 012893 286 PRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGITG-- 363 (454)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~~-- 363 (454)
+......+.+++++...+.||.+++.. +-.++.++++...+-.++. .+|-.+-..+++-+++.
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGGy-------------g~~rlL~~ld~~~i~~~pK--~~iGySDiTaL~~al~~~~ 111 (284)
T PF02016_consen 47 DEERAEDLNEAFADPEIDAIWCARGGY-------------GANRLLPYLDYDAIRKNPK--IFIGYSDITALHNALYAKT 111 (284)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEES--SS--------------GGGGGGGCHHHHHHHSG---EEEE-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeeccc-------------cHHHHHhcccccccccCCC--EEEEecchHHHHHHHHHhC
Confidence 557778899999999999999988764 2234567777777777776 88888888777777664
Q ss_pred CCCeecccc
Q 012893 364 GVPMVCRPV 372 (454)
Q Consensus 364 GvP~i~~P~ 372 (454)
|.+.+.-|+
T Consensus 112 g~~t~hGp~ 120 (284)
T PF02016_consen 112 GLVTFHGPM 120 (284)
T ss_dssp TBEEEES--
T ss_pred CCeEEEcch
Confidence 555555665
No 399
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=23.69 E-value=1.3e+02 Score=30.17 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.8
Q ss_pred HHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 108 EKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 108 ~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
.++++.. +||++|.+.. ...+|+++|||++.+.
T Consensus 365 ~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 365 ESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 3344443 8999999965 4589999999999764
No 400
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=23.67 E-value=1.1e+02 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.362 Sum_probs=25.7
Q ss_pred cEEEEeeCCCCCCC-HHHHHHHHHHHHh--cCCCEEEEEcCC
Q 012893 273 SVIYISFGSMITPP-RAEVIALAEALEA--IGFPFLWSFRGN 311 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~-~~~~~~~~~~~~~--~~~~~i~~~~~~ 311 (454)
.+++|+|||+.... ...+..+.+.++. +++.+.|+..+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 47899999997654 4477778777776 578888988764
No 401
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=23.58 E-value=72 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=25.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
||.++-.|..|+ ++|..| .++| |+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~l--a~~g--~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALL--ADNG--HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHH--HHCT--EEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHH--HHcC--CEEEEEeccH
Confidence 566666676665 789999 8899 9999999864
No 402
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=23.54 E-value=65 Score=27.82 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLF 58 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~ 58 (454)
||++...++.| .+-...+.+.| ++.| ++|.++.++...+.+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L--~~~g--~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQL--TKLG--YDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHH--HHCC--CEEEEEEChHHHhhcc
Confidence 67777777665 44667999999 8899 9999999976655554
No 403
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.45 E-value=1.1e+02 Score=28.33 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccccccccccCCCCeeEEeCCCCCCCCCCCCCCCcchHHHHHHhchHHH
Q 012893 24 AAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFTGNPREPVEHFLKATPGNF 103 (454)
Q Consensus 24 ~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (454)
..-+..|++.| .++| ++|.+++.+...+..++.. . .+ + .. . ... + . ....+
T Consensus 139 ~~~~~~l~~~l--~~~~--~~ivl~g~~~e~~~~~~i~---~--~~-----~----~~--~------~~~-~-~-~~~~l 189 (279)
T cd03789 139 AERFAALADRL--LARG--ARVVLTGGPAERELAEEIA---A--AL-----G----GP--R------VVN-L-A-GKTSL 189 (279)
T ss_pred HHHHHHHHHHH--HHCC--CEEEEEechhhHHHHHHHH---H--hc-----C----CC--c------ccc-C-c-CCCCH
Confidence 34678999999 7779 9999988876444333220 0 00 0 00 0 000 0 0 00112
Q ss_pred HHHHHHHHHhcCCCccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 104 VRALEKAVAKTGLEISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 104 ~~~~~~~~~~~~~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
.+ +..+++ +.|++|+.- .+...+|..+|+|++.+..
T Consensus 190 ~e-~~~li~----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 190 RE-LAALLA----RADLVVTND--SGPMHLAAALGTPTVALFG 225 (279)
T ss_pred HH-HHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 22 233334 449988752 3566889999999999864
No 404
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.26 E-value=1.3e+02 Score=30.03 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=21.9
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEeC
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~~ 146 (454)
+||++|.+.. ...+|+++|+|++.++.
T Consensus 370 ~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 8999999863 34578999999998753
No 405
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.19 E-value=2.4e+02 Score=24.67 Aligned_cols=30 Identities=20% Similarity=-0.016 Sum_probs=23.0
Q ss_pred CCccEEEEcC--chhhHHHHHHHcCCCeEEEe
Q 012893 116 LEISCLITDA--FLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 116 ~~pD~vi~d~--~~~~~~~~A~~lgiP~v~~~ 145 (454)
.++|+|++=- -.+.|..+|..+|+|++.+.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3789988642 23567789999999999974
No 406
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=23.11 E-value=3.8e+02 Score=24.63 Aligned_cols=39 Identities=5% Similarity=-0.010 Sum_probs=31.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN 54 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~ 54 (454)
=+++.-.|+.|=..=++.++... .++| ..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~--a~~G--e~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQ--ASRG--NPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--HhCC--CcEEEEEecCCc
Confidence 34556667999999999998887 6679 899999987433
No 407
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=22.87 E-value=1.8e+02 Score=26.85 Aligned_cols=39 Identities=26% Similarity=0.218 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCccEEEEcCc------hhhHHHHHHHcCCCeEEEeC
Q 012893 106 ALEKAVAKTGLEISCLITDAF------LWFAAEMAEEMRVPWIAYWT 146 (454)
Q Consensus 106 ~~~~~~~~~~~~pD~vi~d~~------~~~~~~~A~~lgiP~v~~~~ 146 (454)
.+.+.++.. ++|+|++.-. .--+..+|+.||+|++++..
T Consensus 102 ~Laa~~~~~--~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 102 ALAAAVKKI--GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHhc--CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 344444443 8999987532 23566899999999999754
No 408
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=22.78 E-value=2e+02 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=23.1
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHhc
Q 012893 270 ENASVIYISFGSMITPPRAEVIALAEALEAI 300 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~ 300 (454)
+.+..+|+++||....+...++..+..+...
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3445899999999766667777777777664
No 409
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=22.70 E-value=2.1e+02 Score=29.72 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeec--------c-C-hHhhhcccCcceEEecCCch---
Q 012893 289 EVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPW--------A-P-QLKILEHSSVCVFVTHCGWN--- 355 (454)
Q Consensus 289 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~--------v-p-~~~ll~~~~~~~~I~HgG~g--- 355 (454)
....+++.|++.|.+.|+...+.....+-+.+.+. +++.++.- + . +..+-.+ ..++++|.|-|
T Consensus 10 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~--~~i~~v~~rhE~~A~~~Adgyar~tg~--~gv~~~t~GpG~~N 85 (557)
T PRK08199 10 GGQILVDALRANGVERVFCVPGESYLAVLDALHDE--TDIRVIVCRQEGGAAMMAEAYGKLTGR--PGICFVTRGPGATN 85 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhcc--CCCcEEEeccHHHHHHHHHHHHHhcCC--CEEEEeCCCccHHH
Confidence 34567777777777777777665433232222111 11222211 1 1 1112222 34899998855
Q ss_pred ---hHHHHHHcCCCeecc
Q 012893 356 ---STIEGITGGVPMVCR 370 (454)
Q Consensus 356 ---sv~eal~~GvP~i~~ 370 (454)
.+.+|.+.++|+|++
T Consensus 86 ~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 86 ASIGVHTAFQDSTPMILF 103 (557)
T ss_pred HHHHHHHHhhcCCCEEEE
Confidence 788999999999977
No 410
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=22.49 E-value=1.2e+02 Score=29.68 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=8.9
Q ss_pred CCCeeccccc
Q 012893 364 GVPMVCRPVF 373 (454)
Q Consensus 364 GvP~i~~P~~ 373 (454)
++|+|.+|..
T Consensus 125 ~~p~i~IPTT 134 (376)
T cd08193 125 RLPLILVPTT 134 (376)
T ss_pred CCCEEEeCCC
Confidence 7899999985
No 411
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=22.45 E-value=4.7e+02 Score=26.09 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCccc
Q 012893 12 HVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSL 57 (454)
Q Consensus 12 ~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~ 57 (454)
=+++...|+.|=..=++.++..++ .+.| +.|.|++.+...+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a-~~~g--~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAA-IKEG--KPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHH-HhCC--CeEEEEeCcCCHHHH
Confidence 456677789999999999998872 2468 899999998666544
No 412
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.28 E-value=2e+02 Score=30.06 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.7
Q ss_pred cceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 345 VCVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 345 ~~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
.+++++|.|-| .+.+|...++|||++-
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 34899998855 7899999999999884
No 413
>PRK13054 lipid kinase; Reviewed
Probab=22.25 E-value=3.2e+02 Score=25.67 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEe
Q 012893 271 NASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVT 350 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~ 350 (454)
.+-.+.++ |... ....+..+...+...+..+.+........... +-........+ ++|.
T Consensus 4 ~~~~~i~N-~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~----------------~a~~~~~~~~d--~vvv 62 (300)
T PRK13054 4 PKSLLILN-GKSA--GNEELREAVGLLREEGHTLHVRVTWEKGDAAR----------------YVEEALALGVA--TVIA 62 (300)
T ss_pred ceEEEEEC-CCcc--chHHHHHHHHHHHHcCCEEEEEEecCCCcHHH----------------HHHHHHHcCCC--EEEE
Q ss_pred cCCchhHHHHHHc--------CCCeeccc
Q 012893 351 HCGWNSTIEGITG--------GVPMVCRP 371 (454)
Q Consensus 351 HgG~gsv~eal~~--------GvP~i~~P 371 (454)
-||=||+.|++.. .+|+-++|
T Consensus 63 ~GGDGTl~evv~~l~~~~~~~~~~lgiiP 91 (300)
T PRK13054 63 GGGDGTINEVATALAQLEGDARPALGILP 91 (300)
T ss_pred ECCccHHHHHHHHHHhhccCCCCcEEEEe
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=22.20 E-value=1.4e+02 Score=30.44 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=36.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLF 58 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~ 58 (454)
--+++.-.|+.|=..=.+.++.+. .++| .+|.+++.+...+.+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~--~~~g--e~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENA--CANK--ERAILFAYEESRAQLL 307 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--HHCC--CeEEEEEeeCCHHHHH
Confidence 345666667999999999999999 7899 9999999987766543
No 415
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.98 E-value=2.2e+02 Score=26.16 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCccEEEEcCchhh------HHHHHHHcCCCeEEEe
Q 012893 107 LEKAVAKTGLEISCLITDAFLWF------AAEMAEEMRVPWIAYW 145 (454)
Q Consensus 107 ~~~~~~~~~~~pD~vi~d~~~~~------~~~~A~~lgiP~v~~~ 145 (454)
+..++++. +.|++|--.+-++ +..+|+..|||++.+.
T Consensus 58 l~~~l~e~--~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 58 LAAFLREE--GIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHc--CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 34445544 8899985545443 3458999999999974
No 416
>PRK11269 glyoxylate carboligase; Provisional
Probab=21.89 E-value=1.8e+02 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.413 Sum_probs=22.4
Q ss_pred cceEEecCC------chhHHHHHHcCCCeeccc
Q 012893 345 VCVFVTHCG------WNSTIEGITGGVPMVCRP 371 (454)
Q Consensus 345 ~~~~I~HgG------~gsv~eal~~GvP~i~~P 371 (454)
++++++|.| .+.+++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 457787877 678999999999999874
No 417
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=21.84 E-value=2.4e+02 Score=27.74 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhc---CchHHHHH-HHHHHHHHHHHHHHhhCCC
Q 012893 401 DETVNALKQVLS---SEEGKRMR-ENVGALKKLAFKAVESDGS 439 (454)
Q Consensus 401 ~~l~~av~~vl~---~~~~~~~~-~~a~~l~~~~~~~~~~~~~ 439 (454)
|.|..+|+...+ ||-.+.+. +..+-+.+-+.++...|.+
T Consensus 192 DALtHAiEAy~s~~a~p~tD~~A~~ai~li~~~L~~a~~~g~d 234 (377)
T COG1454 192 DALTHAIEAYVSPAANPITDALALEAIKLIFEYLPRAVADGDD 234 (377)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 677777777764 33222333 3444456666666655544
No 418
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=21.83 E-value=5.7e+02 Score=23.01 Aligned_cols=142 Identities=13% Similarity=-0.004 Sum_probs=73.0
Q ss_pred CCCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhh-CCCceEeeccChHhhhcccCcceE
Q 012893 270 ENASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERT-KSYGKVVPWAPQLKILEHSSVCVF 348 (454)
Q Consensus 270 ~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~~nv~v~~~vp~~~ll~~~~~~~~ 348 (454)
.++.++.|+.|... . .=+..+.+.+..+.++...-. +++.+-. .+++.....--+...+..+. +|
T Consensus 24 ~~~~VLVVGGG~VA------~-RK~~~Ll~~gA~VtVVap~i~-----~el~~l~~~~~i~~~~r~~~~~dl~g~~--LV 89 (223)
T PRK05562 24 NKIKVLIIGGGKAA------F-IKGKTFLKKGCYVYILSKKFS-----KEFLDLKKYGNLKLIKGNYDKEFIKDKH--LI 89 (223)
T ss_pred CCCEEEEECCCHHH------H-HHHHHHHhCCCEEEEEcCCCC-----HHHHHHHhCCCEEEEeCCCChHHhCCCc--EE
Confidence 34567777777553 1 223455567888777765432 2221111 24455443222333455555 88
Q ss_pred EecCCchhHHHHHH-----cCCCeeccccccchhHHH-----HHHHHhhceeecCcCCC---CCHHHHHHHHHHHhcCch
Q 012893 349 VTHCGWNSTIEGIT-----GGVPMVCRPVFADQALNQ-----RIIETAWGIGVGVXGEK---FTKDETVNALKQVLSSEE 415 (454)
Q Consensus 349 I~HgG~gsv~eal~-----~GvP~i~~P~~~DQ~~nA-----~~v~~~~G~G~~~~~~~---~~~~~l~~av~~vl~~~~ 415 (454)
|..-+-..+.+.++ .|+++.++ |++..+ ..+.+- ++-+.+..+. .-+..|.+.|.+++.+
T Consensus 90 iaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~rg-~l~IaIST~G~sP~lar~lR~~ie~~l~~-- 162 (223)
T PRK05562 90 VIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRSTK-NFVFALNTKGGSPKTSVFIGEKVKNFLKK-- 162 (223)
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEecC-CEEEEEECCCcCcHHHHHHHHHHHHHHHH--
Confidence 88888776666544 35555543 333222 223333 3333333222 2336788888888832
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012893 416 GKRMRENVGALKKLAFK 432 (454)
Q Consensus 416 ~~~~~~~a~~l~~~~~~ 432 (454)
...+-+.+.++++.+++
T Consensus 163 ~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 163 YDDFIEYVTKIRNKAKK 179 (223)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 23566666666666555
No 419
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=21.82 E-value=1.6e+02 Score=26.38 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCccEEEEcCchhhHH---HHHHHcCCCeEE
Q 012893 116 LEISCLITDAFLWFAA---EMAEEMRVPWIA 143 (454)
Q Consensus 116 ~~pD~vi~d~~~~~~~---~~A~~lgiP~v~ 143 (454)
.+.|+|+-|++.+.-. .+++.+|+|++.
T Consensus 177 ~gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 177 QGADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 4899999998776433 388999999987
No 420
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=21.79 E-value=2.8e+02 Score=24.25 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=44.8
Q ss_pred ccccccchhHHHHHHHHhhceeecCc------------CCCCCHHHHH----HHHHHHhcCch-----H--HHHHHHHHH
Q 012893 369 CRPVFADQALNQRIIETAWGIGVGVX------------GEKFTKDETV----NALKQVLSSEE-----G--KRMRENVGA 425 (454)
Q Consensus 369 ~~P~~~DQ~~nA~~v~~~~G~G~~~~------------~~~~~~~~l~----~av~~vl~~~~-----~--~~~~~~a~~ 425 (454)
..|...||...-..+-+-..+|+... ...+.++.++ +.|.++|.|+. + ++...||+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~ 101 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARA 101 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHH
Confidence 45667888887666555548888763 2456777776 67889998872 0 234444555
Q ss_pred HHHHHHHHHhhCCChHHHHHHH
Q 012893 426 LKKLAFKAVESDGSSTKNFKAL 447 (454)
Q Consensus 426 l~~~~~~~~~~~~~~~~~~~~~ 447 (454)
+.+.-++ +||....+=.|
T Consensus 102 ~l~i~~e----~gSf~~ylW~f 119 (187)
T PRK10353 102 YLQMEQN----GEPFADFVWSF 119 (187)
T ss_pred HHHHHHh----cCCHHHHHhhc
Confidence 5444333 45555555333
No 421
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=21.71 E-value=1.3e+02 Score=29.53 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCC
Q 012893 286 PRAEVIALAEALEAIGFPFLWSFRGN 311 (454)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~~~~~ 311 (454)
+.+.+.+.++..+..+..+|+.+|+.
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGG 98 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGG 98 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 44555555555555556666666654
No 422
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=21.70 E-value=5.2e+02 Score=22.15 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=33.0
Q ss_pred eEEecCCchhHHHHHH--cCCCeeccccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIEGIT--GGVPMVCRPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~eal~--~GvP~i~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++.++|++.+..-.. ++-.... ......+..+...+.. |+- ..++ +.++|.+++++.++
T Consensus 100 vV~nN~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~a~a~-G~~~~~v~----~~~el~~al~~a~~ 162 (186)
T cd02015 100 VILNNGSLGMVRQWQELFYEGRYSH-TTLDSNPDFVKLAEAY-GIKGLRVE----KPEELEAALKEALA 162 (186)
T ss_pred EEEECCccHHHHHHHHHHcCCceee-ccCCCCCCHHHHHHHC-CCceEEeC----CHHHHHHHHHHHHh
Confidence 7888999887764321 1111100 0011124566666666 653 3333 57888888887764
No 423
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.70 E-value=1.7e+02 Score=23.57 Aligned_cols=38 Identities=18% Similarity=0.524 Sum_probs=27.0
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHh--cCCCEEEEEcC
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEA--IGFPFLWSFRG 310 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ 310 (454)
.+++++|||........+..+.+.++. .+..+-++...
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 589999999976455667778777764 35566666553
No 424
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=21.67 E-value=97 Score=29.74 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=30.2
Q ss_pred hhhcccCcceEEecCCchhHHHHHH---cCCCeeccccccc
Q 012893 338 KILEHSSVCVFVTHCGWNSTIEGIT---GGVPMVCRPVFAD 375 (454)
Q Consensus 338 ~ll~~~~~~~~I~HgG~gsv~eal~---~GvP~i~~P~~~D 375 (454)
..|..-.++.+|.=||.+|...|.. .|+|+|.+|-..|
T Consensus 88 ~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 88 ANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 3355566789999999999988855 6999999997544
No 425
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.57 E-value=1.2e+02 Score=30.46 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=21.7
Q ss_pred CccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 117 EISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 117 ~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
+||++|.+.. ...+|+++|||++.+.
T Consensus 387 ~pdllig~s~---~~~~A~~lgip~~~~~ 412 (443)
T TIGR01862 387 KPDIIFSGIK---EKFVAQKLGVPYRQMH 412 (443)
T ss_pred CCCEEEEcCc---chhhhhhcCCCeEecC
Confidence 8999998854 4579999999999864
No 426
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=21.56 E-value=2e+02 Score=23.60 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=29.9
Q ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcC
Q 012893 271 NASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRG 310 (454)
Q Consensus 271 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 310 (454)
...+|++.+|+-.....+.++.+++.+. .+.++++.+..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3458999999998877888888888874 45777776554
No 427
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.52 E-value=1.4e+02 Score=26.05 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=29.5
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 11 RHVAVLAF--PFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 11 ~~il~~~~--~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
+|++.++. ++-|=..=...||.+| .++| ++|.++=..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~l--a~~G--~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAF--AQAG--YKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHH--HhCC--CeEEEEeCC
Confidence 66665555 5778888999999999 8899 999887554
No 428
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.49 E-value=6.8e+02 Score=23.48 Aligned_cols=109 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEe-CCCcCccccccccccCCCCeeEEeCCCCCCCCCCCC
Q 012893 7 STQRRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFS-TAQSNGSLFMEKDELRDCKIVPYNVESGLPEGFRFT 85 (454)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 85 (454)
+.+++||+++.+++...+.-.+.-.+.= .-.. .=+.+++ .+......++. |++++.++......
T Consensus 86 ~~~~~ri~vl~Sg~g~nl~al~~~~~~~--~~~~--~i~~visn~~~~~~lA~~~-------gIp~~~~~~~~~~~---- 150 (286)
T PRK13011 86 PAARPKVLIMVSKFDHCLNDLLYRWRIG--ELPM--DIVGVVSNHPDLEPLAAWH-------GIPFHHFPITPDTK---- 150 (286)
T ss_pred cccCceEEEEEcCCcccHHHHHHHHHcC--CCCc--EEEEEEECCccHHHHHHHh-------CCCEEEeCCCcCch----
Q ss_pred CCCcchHHHHHHhchHHHHHHHHHHHHhcCCCccEEE-EcCchhhHHHHHHHcCCCeEEEeCc
Q 012893 86 GNPREPVEHFLKATPGNFVRALEKAVAKTGLEISCLI-TDAFLWFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi-~d~~~~~~~~~A~~lgiP~v~~~~~ 147 (454)
......+.+++++. +||++| ..+.-.....+-+.+.-..+-++++
T Consensus 151 ---------------~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 151 ---------------PQQEAQVLDVVEES--GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ---------------hhhHHHHHHHHHHh--CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 429
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.41 E-value=3.2e+02 Score=24.06 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHHhhCC
Q 012893 403 TVNALKQVLSSEEG-KRMRENVGALKKLAFKAVESDG 438 (454)
Q Consensus 403 l~~av~~vl~~~~~-~~~~~~a~~l~~~~~~~~~~~~ 438 (454)
...-+.+++-|.+. +++++.+++++++++++-+.++
T Consensus 60 ~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d 96 (201)
T COG1422 60 YITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455666777654 7899999999999999866655
No 430
>PRK07206 hypothetical protein; Provisional
Probab=21.26 E-value=3.8e+02 Score=26.47 Aligned_cols=33 Identities=6% Similarity=-0.117 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQ 52 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~ 52 (454)
.+|+++-.... ...+++++ ++.| +++..++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~--~~~G--~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAF--KKRG--IEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHH--HHcC--CeEEEEEcCC
Confidence 35666665433 34689999 8899 9998888753
No 431
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=21.23 E-value=4.5e+02 Score=24.61 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=32.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcccccc
Q 012893 10 RRHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGSLFME 60 (454)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~~~~~ 60 (454)
+++|+++-.|..|. .+|+.| +++| |.|.++......+..++.
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l--~~~g--~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARAL--KEAG--LVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHH--HHcC--CeEEEEeecCcHHHHHHH
Confidence 46888888887775 478999 9999 999998887766554433
No 432
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=21.23 E-value=8.2e+02 Score=25.45 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=35.9
Q ss_pred eEEecCCchhHHHH--HHcCCCeeccccccchhHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIEG--ITGGVPMVCRPVFADQALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~ea--l~~GvP~i~~P~~~DQ~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++..||+|.+..- ..++.+....= .......+...+.. |+ |.++ -+.++|.+++.+.++
T Consensus 471 vV~NN~~yg~i~~~q~~~~~~~~~~~~-~~~~~d~~~~A~a~-G~~~~~v----~~~~eL~~al~~a~~ 533 (572)
T PRK06456 471 VIFDNRTLGLVRQVQDLFFGKRIVGVD-YGPSPDFVKLAEAF-GALGFNV----TTYEDIEKSLKSAIK 533 (572)
T ss_pred EEEECCchHHHHHHHHHhhCCCccccc-CCCCCCHHHHHHHC-CCeeEEe----CCHHHHHHHHHHHHh
Confidence 78999999977532 32343321110 01125667777777 75 2333 278899999988764
No 433
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=21.23 E-value=7.6e+02 Score=24.15 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=27.0
Q ss_pred CCcEEEEEc-CCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCC
Q 012893 9 QRRHVAVLA-FPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTA 51 (454)
Q Consensus 9 ~~~~il~~~-~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~ 51 (454)
..++|.++- .|..|. .+|+.| +++| |+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l--~~~G--~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKML--TLSG--YQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHH--HHCC--CeEEEeCCC
Confidence 347888886 777775 578999 8899 999998753
No 434
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=21.22 E-value=1.2e+02 Score=29.04 Aligned_cols=32 Identities=19% Similarity=0.036 Sum_probs=24.0
Q ss_pred CCccEEE-EcC-chhhHHHHHHHcCCCeEEEeCc
Q 012893 116 LEISCLI-TDA-FLWFAAEMAEEMRVPWIAYWTA 147 (454)
Q Consensus 116 ~~pD~vi-~d~-~~~~~~~~A~~lgiP~v~~~~~ 147 (454)
..||+|| .|. ....+..=|.++|||+|.+.-+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 4699764 664 3457778899999999998654
No 435
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.09 E-value=2.7e+02 Score=26.02 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=49.3
Q ss_pred cEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecC
Q 012893 273 SVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHC 352 (454)
Q Consensus 273 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~Hg 352 (454)
.++|+++|+.+ .....+...+.+.|.+++........ + .+...+..-++-++|+|.
T Consensus 132 rI~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~~~-------------------~-~~~~~~~~~Dv~i~iS~s 187 (281)
T COG1737 132 RIYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTHGQ-------------------L-MQLALLTPGDVVIAISFS 187 (281)
T ss_pred eEEEEEechhH----HHHHHHHHHHHHcCCceeEecchHHH-------------------H-HHHHhCCCCCEEEEEeCC
Confidence 36666666654 34455666777777776665443211 1 144455666677899999
Q ss_pred Cch-----hHHHHHHcCCCeecccccc
Q 012893 353 GWN-----STIEGITGGVPMVCRPVFA 374 (454)
Q Consensus 353 G~g-----sv~eal~~GvP~i~~P~~~ 374 (454)
|.. ....|-..|+|.|.+=...
T Consensus 188 G~t~e~i~~a~~ak~~ga~vIaiT~~~ 214 (281)
T COG1737 188 GYTREIVEAAELAKERGAKVIAITDSA 214 (281)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 976 4556678899999885443
No 436
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=21.05 E-value=1e+02 Score=29.53 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=30.4
Q ss_pred hhhcccCcceEEecCCchhHHHHHH---cCCCeeccccccc
Q 012893 338 KILEHSSVCVFVTHCGWNSTIEGIT---GGVPMVCRPVFAD 375 (454)
Q Consensus 338 ~ll~~~~~~~~I~HgG~gsv~eal~---~GvP~i~~P~~~D 375 (454)
..|..-.++.+|.=||.||..-|.. +|+|+|.+|-.-|
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 3455667889999999999988755 5999999997544
No 437
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.01 E-value=15 Score=19.97 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=12.8
Q ss_pred CchhHHHHHHcCCCeec
Q 012893 353 GWNSTIEGITGGVPMVC 369 (454)
Q Consensus 353 G~gsv~eal~~GvP~i~ 369 (454)
|.|++.-+++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888764
No 438
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=20.91 E-value=3.2e+02 Score=21.54 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHhhceeecCcCCCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 012893 382 IIETAWGIGVGVXGEKFTKDETVNALKQVLSSEEGKRMRENVGALKKLAFK 432 (454)
Q Consensus 382 ~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~~a~~l~~~~~~ 432 (454)
.+.+.|-+|..-....++.++|.+.|.++.+++ .++.+-...+-+++.+
T Consensus 52 al~d~i~~a~~~~~~~~s~~eIe~~ie~~~e~~--~~~~~l~~~vl~el~~ 100 (113)
T PF12363_consen 52 ALADIIYAATAHEKKRPSREEIEDYIEDIIEDE--DDIEELFDEVLKELKK 100 (113)
T ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHh
Confidence 344445666665555579999999999988765 1355555555555554
No 439
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=20.77 E-value=1.7e+02 Score=28.45 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCc
Q 012893 286 PRAEVIALAEALEAIGFPFLWSFRGNA 312 (454)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~~~~~~ 312 (454)
+.+.+..+.+.+++.+..+|+.+|+..
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IIavGGGS 94 (357)
T cd08181 68 SLETIMEAVEIAKKFNADFVIGIGGGS 94 (357)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 444455555555555556666666543
No 440
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=20.66 E-value=2.1e+02 Score=30.29 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeec--------cC--hHhhhcccCcceEEecCCch---
Q 012893 289 EVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPW--------AP--QLKILEHSSVCVFVTHCGWN--- 355 (454)
Q Consensus 289 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~--------vp--~~~ll~~~~~~~~I~HgG~g--- 355 (454)
.-+.+++.|++.|.+.+....+.....+-+.+.+. .++..+.- +- +..+-.+ .+++++|.|-|
T Consensus 33 ~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~--~~i~~v~~rhE~~A~~~Adgyar~tg~--~gv~~~t~GPG~~N 108 (612)
T PRK07789 33 GAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDS--TKVRHVLVRHEQGAGHAAEGYAQATGR--VGVCMATSGPGATN 108 (612)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhcc--CCceEEEeccHHHHHHHHHHHHHHhCC--CEEEEECCCccHHH
Confidence 45678888888888888888776543333333211 12322211 11 1111122 34889998866
Q ss_pred ---hHHHHHHcCCCeeccc
Q 012893 356 ---STIEGITGGVPMVCRP 371 (454)
Q Consensus 356 ---sv~eal~~GvP~i~~P 371 (454)
.+.+|...++|||++-
T Consensus 109 ~l~gl~~A~~~~~PllvI~ 127 (612)
T PRK07789 109 LVTPIADANMDSVPVVAIT 127 (612)
T ss_pred HHHHHHHHhhcCCCEEEEe
Confidence 7889999999999884
No 441
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=20.65 E-value=4.2e+02 Score=29.59 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=56.5
Q ss_pred eccChH---hhhcccCcceEEec---CCchh-HHHHHHcCC---CeeccccccchhHHHHHHHHhhc-eeecCcCCCCCH
Q 012893 332 PWAPQL---KILEHSSVCVFVTH---CGWNS-TIEGITGGV---PMVCRPVFADQALNQRIIETAWG-IGVGVXGEKFTK 400 (454)
Q Consensus 332 ~~vp~~---~ll~~~~~~~~I~H---gG~gs-v~eal~~Gv---P~i~~P~~~DQ~~nA~~v~~~~G-~G~~~~~~~~~~ 400 (454)
..+|+. +++..++ +++.- -|.|. ..|+++++. -+++++-. +.....+ | -|+.+++ .+.
T Consensus 446 ~~l~~eeL~AlY~~AD--V~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf------aGaa~~L-~~~AllVNP--~D~ 514 (934)
T PLN03064 446 RSLDFHALCALYAVTD--VALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF------AGAAQSL-GAGAILVNP--WNI 514 (934)
T ss_pred cCCCHHHHHHHHHhCC--EEEeCccccccCchHHHHHHhhcCCCCCeEEeCC------CchHHHh-CCceEEECC--CCH
Confidence 345643 6666666 55543 47774 459999955 12222321 1111222 3 3566666 589
Q ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012893 401 DETVNALKQVLS-SEEGKRMRENVGALKKLAFKAVESDGSSTKNFKALVEVVN 452 (454)
Q Consensus 401 ~~l~~av~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
+.++++|.+.|+ ++ +.-+++.+++.+.+.. .+...=.+.|++.|.
T Consensus 515 ~~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 515 TEVAASIAQALNMPE--EEREKRHRHNFMHVTT-----HTAQEWAETFVSELN 560 (934)
T ss_pred HHHHHHHHHHHhCCH--HHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHH
Confidence 999999999987 43 1334444444444333 444444555665554
No 442
>PRK05636 replicative DNA helicase; Provisional
Probab=20.63 E-value=4.2e+02 Score=27.23 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=32.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcCcc
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSNGS 56 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~~~ 56 (454)
-=|++...|+.|=..-.+.+|...+ .+.| ..|.|++.+-..+.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a-~~~g--~~v~~fSlEMs~~q 308 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSAS-IKHN--KASVIFSLEMSKSE 308 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHH-HhCC--CeEEEEEeeCCHHH
Confidence 3456777789999999999998762 3568 89999988765543
No 443
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=20.56 E-value=1.5e+02 Score=30.59 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCccEEEEcCchhhHHHHHHHcCCCeEEEe
Q 012893 116 LEISCLITDAFLWFAAEMAEEMRVPWIAYW 145 (454)
Q Consensus 116 ~~pD~vi~d~~~~~~~~~A~~lgiP~v~~~ 145 (454)
.+||++|.+.. +..+|+++|||++.+.
T Consensus 436 ~~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECch---HHHHHHHcCCCEEEec
Confidence 37999998854 4678999999999874
No 444
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=20.54 E-value=76 Score=29.77 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=35.6
Q ss_pred cCcceEEecCCchhHHHHHHc----CCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhcC
Q 012893 343 SSVCVFVTHCGWNSTIEGITG----GVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLSS 413 (454)
Q Consensus 343 ~~~~~~I~HgG~gsv~eal~~----GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~~ 413 (454)
..++++|+-||=||+..++.. ++|++.++. |..--...+..+++.+++.+++++
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~-----------------G~lgfl~~~~~~~~~~~l~~~~~g 132 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT-----------------GTLGFLTEFEPEDIEEALEKILAG 132 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES-----------------SSSTSSSSEEGCGHHHHHHHHHHT
T ss_pred cCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC-----------------CCccccccCCHHHHHHHHHHHhcC
Confidence 334599999999999999763 678887752 322212234666777777777653
No 445
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.53 E-value=2.3e+02 Score=29.80 Aligned_cols=80 Identities=14% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeec--------cCh-HhhhcccCcceEEecCCch----
Q 012893 289 EVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPW--------APQ-LKILEHSSVCVFVTHCGWN---- 355 (454)
Q Consensus 289 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~--------vp~-~~ll~~~~~~~~I~HgG~g---- 355 (454)
.-..++..|++.|.+.|+...+.....+-+.+.+ .+++.++.- +-. -.-+ .-..+++++|.|-|
T Consensus 13 ~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~--~~~i~~I~~rhE~~A~~mAdgyar~-tg~~gv~~~t~GPG~~N~ 89 (595)
T PRK09107 13 GAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQ--QDDIQHILVRHEQGAGHAAEGYARS-TGKPGVVLVTSGPGATNA 89 (595)
T ss_pred HHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhh--cCCCeEEEECChHHHHHHHHHHHHH-hCCCEEEEECCCccHhHH
Confidence 3456777888888888777776643223233311 123333211 111 1111 11234889998855
Q ss_pred --hHHHHHHcCCCeeccc
Q 012893 356 --STIEGITGGVPMVCRP 371 (454)
Q Consensus 356 --sv~eal~~GvP~i~~P 371 (454)
.+++|...++|||++-
T Consensus 90 l~gia~A~~~~~Pvl~i~ 107 (595)
T PRK09107 90 VTPLQDALMDSIPLVCIT 107 (595)
T ss_pred HHHHHHHhhcCCCEEEEE
Confidence 7889999999999874
No 446
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=20.52 E-value=7.2e+02 Score=26.05 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCCchhHHHHHH--cCCCeec
Q 012893 292 ALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCGWNSTIEGIT--GGVPMVC 369 (454)
Q Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG~gsv~eal~--~GvP~i~ 369 (454)
.+-..++..+.++|+.+|.....--..++......++ | =+-+++.++|+|.+..... ++.+...
T Consensus 444 aiGa~la~p~r~vv~i~GDG~f~~~~~el~Ta~~~~l------p--------v~ivV~NN~~y~~~~~~~~~~~~~~~~~ 509 (588)
T PRK07525 444 IIGAKIACPDRPVVGFAGDGAWGISMNEVMTAVRHNW------P--------VTAVVFRNYQWGAEKKNQVDFYNNRFVG 509 (588)
T ss_pred HHHHHHhCCCCcEEEEEcCchHhccHHHHHHHHHhCC------C--------eEEEEEeCchhHHHHHHHHHHhCCCccc
Confidence 4555566667788888886532111111111111111 1 1126779999987653222 2222221
Q ss_pred cccccch-hHHHHHHHHhhce-eecCcCCCCCHHHHHHHHHHHhc
Q 012893 370 RPVFADQ-ALNQRIIETAWGI-GVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 370 ~P~~~DQ-~~nA~~v~~~~G~-G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
. ..++ ...+...+.. |+ |..++ +.++|.+++++.++
T Consensus 510 ~--~~~~~~d~~~lA~a~-G~~~~~v~----~~~el~~al~~a~~ 547 (588)
T PRK07525 510 T--ELDNNVSYAGIAEAM-GAEGVVVD----TQEELGPALKRAID 547 (588)
T ss_pred c--cCCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHh
Confidence 1 1122 4667777777 64 33333 67889888888775
No 447
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.49 E-value=9.7e+02 Score=24.88 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=58.8
Q ss_pred EEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEecCC
Q 012893 274 VIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTHCG 353 (454)
Q Consensus 274 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~HgG 353 (454)
--|++.|+.+.+--..-..+-.++...+.+++..+|.....--..++...... ..+-+-+++..||
T Consensus 410 ~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~--------------~lpvi~vV~NN~~ 475 (564)
T PRK08155 410 RQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAEN--------------QLDVKIILMNNEA 475 (564)
T ss_pred CeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHh--------------CCCeEEEEEeCCc
Confidence 34555443333222333345555666677888777754321101111100000 1111237899999
Q ss_pred chhHHHH--HHcCCCeeccccccchhHHHHHHHHhhceeecCcCCCCCHHHHHHHHHHHhc
Q 012893 354 WNSTIEG--ITGGVPMVCRPVFADQALNQRIIETAWGIGVGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 354 ~gsv~ea--l~~GvP~i~~P~~~DQ~~nA~~v~~~~G~G~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+|.+..- ..++.+....-+ ......+...+.. |+--. +- -+.++|.+++.+.++
T Consensus 476 ~g~~~~~q~~~~~~~~~~~~~-~~~~d~~~~a~a~-G~~~~-~v--~~~~el~~al~~a~~ 531 (564)
T PRK08155 476 LGLVHQQQSLFYGQRVFAATY-PGKINFMQIAAGF-GLETC-DL--NNEADPQAALQEAIN 531 (564)
T ss_pred ccccHHHHHHhcCCCeeeccC-CCCCCHHHHHHHC-CCeEE-Ee--CCHHHHHHHHHHHHh
Confidence 9976542 334444332211 1234566666666 65321 11 267889888888764
No 448
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=20.47 E-value=77 Score=25.36 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=22.6
Q ss_pred ceEEecCCchhHHHHHHc----C-----CCeecccccc
Q 012893 346 CVFVTHCGWNSTIEGITG----G-----VPMVCRPVFA 374 (454)
Q Consensus 346 ~~~I~HgG~gsv~eal~~----G-----vP~i~~P~~~ 374 (454)
+.+|.-||=||+.|++-. + .|+.++|...
T Consensus 51 d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 51 DRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 489999999999998642 3 6788888744
No 449
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=20.44 E-value=71 Score=27.53 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=31.0
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHhhh-cCCCcEEEEEEeCCCcCcccc
Q 012893 12 HVAVLAFPFGTHAAP-LLDLVRRLSEA-ALEEEVTFSFFSTAQSNGSLF 58 (454)
Q Consensus 12 ~il~~~~~~~GH~~p-~l~la~~L~~~-~~G~~h~V~~~~~~~~~~~~~ 58 (454)
||+....++ ||... .+.+.+.| + +.| |+|.++.++...+.+.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L--~~~~g--~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDV--KNRYG--DEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHH--HHhcC--CEEEEEECHhHHHHHH
Confidence 355555555 77755 88999999 5 569 9999999987765554
No 450
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=20.43 E-value=8.2e+02 Score=23.99 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=48.6
Q ss_pred HHHHH-HHHHHHh-cCCCEEEEEcCCcccccchhhhhh--hCCCceEeeccChH---hhhcccCcceEEecCCc----hh
Q 012893 288 AEVIA-LAEALEA-IGFPFLWSFRGNAEEQLPKGFLER--TKSYGKVVPWAPQL---KILEHSSVCVFVTHCGW----NS 356 (454)
Q Consensus 288 ~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~--~~~nv~v~~~vp~~---~ll~~~~~~~~I~HgG~----gs 356 (454)
+.+.. +-+.+.+ .+.+|++.--+.....+ ++..|+ ..++|.+.+-+|++ .+|.+-+ +|++-+=. -+
T Consensus 211 Dll~~iIp~vc~~~p~vrfii~GDGPk~i~l-ee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~--IFlntSlTEafc~~ 287 (426)
T KOG1111|consen 211 DLLLEIIPSVCDKHPEVRFIIIGDGPKRIDL-EEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGD--IFLNTSLTEAFCMV 287 (426)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecCCcccchH-HHHHHHhhccCceEEecccchHHHHHHHhcCc--EEeccHHHHHHHHH
Confidence 44444 4445554 45677666544432222 233332 45889999999975 5666655 77765432 36
Q ss_pred HHHHHHcCCCeecc
Q 012893 357 TIEGITGGVPMVCR 370 (454)
Q Consensus 357 v~eal~~GvP~i~~ 370 (454)
+.||+.+|.|.|.-
T Consensus 288 ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 288 IVEAASCGLPVVST 301 (426)
T ss_pred HHHHHhCCCEEEEe
Confidence 78999999999854
No 451
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=20.37 E-value=5.9e+02 Score=22.35 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=55.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHhhhcCCCcEEEEEEeCCCcC-ccccccccc-cCCCCeeEEeCCCCCCCCCCCCCCC
Q 012893 11 RHVAVLAFPFGTHAAPLLDLVRRLSEAALEEEVTFSFFSTAQSN-GSLFMEKDE-LRDCKIVPYNVESGLPEGFRFTGNP 88 (454)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~la~~L~~~~~G~~h~V~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (454)
-=|.+.+..+.|-....+.+|-+- .-+| .+|.++-.=... ..-+..... ++ .++.|+..++++...... .
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa--~GhG--~rv~vvQFiKg~~~~GE~~~~~~~~-~~v~~~~~~~g~tw~~~~---~ 100 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRA--LGHG--LRVGVVQFIKGGWKYGEEAALEKFG-LGVEFHGMGEGFTWETQD---R 100 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHH--hcCC--CEEEEEEEeecCcchhHHHHHHhhc-cceeEEecCCceeCCCcC---c
Confidence 336677777999888887777666 5567 788776532111 111110001 21 368888888777554211 1
Q ss_pred cchHHHHHHhchHHHHHHHHHHHHhcCCCccEEEEcCchh
Q 012893 89 REPVEHFLKATPGNFVRALEKAVAKTGLEISCLITDAFLW 128 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~~~~ 128 (454)
.+.. ..+...+... ...+. +.+.|+||.|-+.+
T Consensus 101 ~~d~----~aa~~~w~~a-~~~l~--~~~ydlviLDEl~~ 133 (198)
T COG2109 101 EADI----AAAKAGWEHA-KEALA--DGKYDLVILDELNY 133 (198)
T ss_pred HHHH----HHHHHHHHHH-HHHHh--CCCCCEEEEehhhH
Confidence 1222 2222333333 22333 34899999997753
No 452
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=20.37 E-value=1.8e+02 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.3
Q ss_pred ceEEecCCch------hHHHHHHcCCCeeccc
Q 012893 346 CVFVTHCGWN------STIEGITGGVPMVCRP 371 (454)
Q Consensus 346 ~~~I~HgG~g------sv~eal~~GvP~i~~P 371 (454)
+++++|.|-| .+.||...++|+|++-
T Consensus 65 gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 65 GVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4889998855 7899999999999884
No 453
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=20.32 E-value=5.2e+02 Score=21.71 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=31.3
Q ss_pred eEEecCCchhHHHHHH--c--CCCeeccccccchhHHHHHHHHhhcee-ecCcCCCCCHHHHHHHHHHHhc
Q 012893 347 VFVTHCGWNSTIEGIT--G--GVPMVCRPVFADQALNQRIIETAWGIG-VGVXGEKFTKDETVNALKQVLS 412 (454)
Q Consensus 347 ~~I~HgG~gsv~eal~--~--GvP~i~~P~~~DQ~~nA~~v~~~~G~G-~~~~~~~~~~~~l~~av~~vl~ 412 (454)
+++..+|++.+...-. + +.+... ....+..+...+.. |+- ..++ +.++|.+++++.++
T Consensus 98 vv~NN~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~la~a~-G~~~~~v~----~~~el~~al~~a~~ 160 (172)
T cd02004 98 VVGNNGGWYQGLDGQQLSYGLGLPVTT---LLPDTRYDLVAEAF-GGKGELVT----TPEELKPALKRALA 160 (172)
T ss_pred EEEECcccccchhhhhhhccCCCceec---cCCCCCHHHHHHHC-CCeEEEEC----CHHHHHHHHHHHHH
Confidence 5667777766543211 1 111111 12345667777777 763 2233 57888888887664
No 454
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=20.31 E-value=1.8e+02 Score=28.56 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=8.9
Q ss_pred CCCeeccccc
Q 012893 364 GVPMVCRPVF 373 (454)
Q Consensus 364 GvP~i~~P~~ 373 (454)
++|+|++|..
T Consensus 121 ~~p~i~IPTt 130 (386)
T cd08191 121 VLPLIAVPTT 130 (386)
T ss_pred CCCEEEEeCC
Confidence 7899999975
No 455
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=20.20 E-value=2.8e+02 Score=26.06 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=41.1
Q ss_pred CcEEEEeeCCCCCCCHHHHHHHHHHHHhcCCCEEEEEcCCcccccchhhhhhhCCCceEeeccChHhhhcccCcceEEec
Q 012893 272 ASVIYISFGSMITPPRAEVIALAEALEAIGFPFLWSFRGNAEEQLPKGFLERTKSYGKVVPWAPQLKILEHSSVCVFVTH 351 (454)
Q Consensus 272 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~nv~v~~~vp~~~ll~~~~~~~~I~H 351 (454)
+.+..+.+|.++ ..++..+...|.++.+..+.... . .... ........+.+....+..++ ++|.|
T Consensus 152 k~v~IiG~G~iG-------~avA~~L~~~G~~V~v~~R~~~~--~-~~~~---~~g~~~~~~~~l~~~l~~aD--iVint 216 (287)
T TIGR02853 152 SNVMVLGFGRTG-------MTIARTFSALGARVFVGARSSAD--L-ARIT---EMGLIPFPLNKLEEKVAEID--IVINT 216 (287)
T ss_pred CEEEEEcChHHH-------HHHHHHHHHCCCEEEEEeCCHHH--H-HHHH---HCCCeeecHHHHHHHhccCC--EEEEC
Confidence 357888888765 25666777778776655443211 0 1110 01222233334456676666 99999
Q ss_pred CCchhHHHH
Q 012893 352 CGWNSTIEG 360 (454)
Q Consensus 352 gG~gsv~ea 360 (454)
...+.+.+.
T Consensus 217 ~P~~ii~~~ 225 (287)
T TIGR02853 217 IPALVLTAD 225 (287)
T ss_pred CChHHhCHH
Confidence 887654443
Done!