BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012894
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YNS|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1 And Its
Complex With A Substrate Analog
Length = 261
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 90/143 (62%), Gaps = 6/143 (4%)
Query: 287 IVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVA 346
I+LDIEGTTTPI+FV ++LFPY +NV ++L ++ E Q D+ LLR Q E+D +
Sbjct: 13 ILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LD 70
Query: 347 GAVPIPPGDAGK----EEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGE 402
GAVPIP +++I A+V NV + DRK TALKQLQGH+WR F + ++ E
Sbjct: 71 GAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAE 130
Query: 403 VFDDVPEALEKWHSLGTKVFSFS 425
F DV A+ KW G KV+ +S
Sbjct: 131 FFADVVPAVRKWREAGMKVYIYS 153
>pdb|1ZS9|A Chain A, Crystal Structure Of Human Enolase-Phosphatase E1
Length = 261
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 86/143 (60%), Gaps = 6/143 (4%)
Query: 287 IVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVA 346
I+LDIEGTTTPI+FV ++LFPY +NV ++L ++ E Q D+ LLR Q E+D +
Sbjct: 13 ILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAH--LD 70
Query: 347 GAVPIPPGDAGK----EEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGE 402
GAVPIP ++ I A+V NV DRK TALKQLQGH WR F + + E
Sbjct: 71 GAVPIPAASGNGVDDLQQXIQAVVDNVCWQXSLDRKTTALKQLQGHXWRAAFTAGRXKAE 130
Query: 403 VFDDVPEALEKWHSLGTKVFSFS 425
F DV A+ KW G KV+ +S
Sbjct: 131 FFADVVPAVRKWREAGXKVYIYS 153
>pdb|2IRP|A Chain A, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
pdb|2IRP|B Chain B, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
Length = 208
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 28/210 (13%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I E R ++ GWV T G+I+ KV ++ I ++ SG K ++ PED+ ++
Sbjct: 16 IIEAGRILHSRGWVPATSGNISAKV-------SEEYIAITASGKHKGKLTPEDILLIDYE 68
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEF- 152
G + P + AV+H+H + +++++ K+F
Sbjct: 69 GRPVGGGKPSAETLLHTTVYKLFP---------EVNAVVHTHSPNATVISIVE--KKDFV 117
Query: 153 RITHMEMIKGIKG-HGYYDELVVPIIENTAYENELTDSLAKAIDAYPKAT----AVLVRN 207
+ E++K H + ++ +PI N + LAK ++ Y K + L+R
Sbjct: 118 ELEDYELLKAFPDIHTHEVKIKIPIFPN----EQNIPLLAKEVENYFKTSEDKYGFLIRG 173
Query: 208 HGIYVWGDSWINAKTQAECYHYLFDAAIKL 237
HG+Y WG S A E ++F+ +KL
Sbjct: 174 HGLYTWGRSXEEALIHTEALEFIFECELKL 203
>pdb|2G80|A Chain A, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|B Chain B, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|C Chain C, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
pdb|2G80|D Chain D, Crystal Structure Of Utr4 Protein (Unknown Transcript 4
Protein) (Yel038w) From Saccharomyces Cerevisiae At 2.28
A Resolution
Length = 253
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 28/138 (20%)
Query: 288 VLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVAG 347
+LDIEGT PISFV E LFPY + V + V DT ++ + + SQ D K+
Sbjct: 35 LLDIEGTVCPISFVKETLFPYFTNKVPQL--VQQDTRDSP--VSNILSQFHIDNKE---- 86
Query: 348 AVPIPPGDAGKEEVIAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDV 407
L A++ ++ D K LKQLQG++W G+ES +++ V+ D
Sbjct: 87 ----------------QLQAHILELVAKDVKDPILKQLQGYVWAHGYESGQIKAPVYADA 130
Query: 408 PEALEKWHSLGTKVFSFS 425
+ +++ +VF +S
Sbjct: 131 IDFIKR----KKRVFIYS 144
>pdb|1E46|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73s
Length = 215
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSSWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E48|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73qY113FY209F
Length = 215
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSQWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E47|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73q
Length = 215
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSQWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZV|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113fY209F
Length = 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZZ|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113f
Length = 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZY|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant E214a
Length = 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T
pdb|2FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T With Cobalt
pdb|3FUA|A Chain A, L-Fuculose-1-Phosphate Aldolase Crystal Form K
pdb|4FUA|A Chain A, L-fuculose-1-phosphate Aldolase Complex With Pgh
Length = 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZX|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant R212a
Length = 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZW|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant F131a
Length = 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E4B|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29q
Length = 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G ++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGQVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E4C|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant S71q
Length = 215
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GKHEEGKLPQSEWR----------FHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1DZU|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant T26a
Length = 215
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG G G+++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGAAGNVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|1E49|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29lS71A
Length = 215
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GT G ++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTAGLVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 61
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G M AY+ R DA AV+H+H + V+++N
Sbjct: 62 GKHEEGKLPASEWR----------FHMAAYQSRPDANAVVHNHAVHCTAVSILN 105
>pdb|2FK5|A Chain A, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FK5|B Chain B, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|A Chain A, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|B Chain B, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|C Chain C, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|D Chain D, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|E Chain E, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|F Chain F, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|G Chain G, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|H Chain H, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
Length = 200
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 41 FYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXX 100
+ G +S T G+ +++ L++ SGVQK R+ PED+ + G
Sbjct: 16 LFAQGLISATAGNFSVRTKGG--------FLITKSGVQKARLTPEDLLEVPLEGPI---- 63
Query: 101 XXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMI 160
S + + + Y + A A++H+H + ++ F ++ + +
Sbjct: 64 --------PEGASVESVVHREVYRRTGARALVHAHPRVAVALS--------FHLSRLRPL 107
Query: 161 KGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINA 220
++G Y E+ V + + E S+A+A+ + A L+R HG + G
Sbjct: 108 D-LEGQHYLKEVPVLAPKTVSATEEAALSVAEALREH---RACLLRGHGAFAVGLKEAPE 163
Query: 221 KTQAECY 227
+ E Y
Sbjct: 164 EALLEAY 170
>pdb|1E4A|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant Del(27)
Length = 214
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN 93
I + C LG GTG +++++ D +L++P+G+ E++ + + GN
Sbjct: 10 IIDTCLEMTRLGLNQGTG-NVSVRYQDG--------MLITPTGIPYEKLTESHIVFIDGN 60
Query: 94 GTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMIN 146
G S M AY+ R DA AV+H+H + V+++N
Sbjct: 61 GK----------HEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILN 104
>pdb|1IKO|P Chain P, Crystal Structure Of The Murine Ephrin-B2 Ectodomain
Length = 178
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 237 LHQLGLDWSTP----NHGPTRNFKLGLGSNGNVNTSAKAV 272
L ++G D S+ NHGPTR +L G+NG +T++ V
Sbjct: 135 LMKVGQDASSAGSARNHGPTRRPELEAGTNGRSSTTSPFV 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,429,079
Number of Sequences: 62578
Number of extensions: 559018
Number of successful extensions: 1410
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 21
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)