Query 012894
Match_columns 454
No_of_seqs 224 out of 1467
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4229 Predicted enolase-phos 100.0 5.9E-49 1.3E-53 359.2 9.3 130 283-431 3-132 (229)
2 KOG2630 Enolase-phosphatase E- 100.0 6.6E-45 1.4E-49 343.4 10.4 146 282-430 6-151 (254)
3 PRK06833 L-fuculose phosphate 100.0 4.2E-43 9E-48 336.5 22.2 200 28-257 4-205 (214)
4 PRK08087 L-fuculose phosphate 100.0 8.1E-43 1.8E-47 334.8 21.8 203 26-259 2-206 (215)
5 cd00398 Aldolase_II Class II A 100.0 3.3E-42 7.1E-47 328.8 21.0 201 29-257 2-206 (209)
6 PRK05874 L-fuculose-phosphate 100.0 5.3E-42 1.1E-46 329.5 22.5 201 27-255 4-206 (217)
7 PRK07490 hypothetical protein; 100.0 5.1E-42 1.1E-46 335.3 22.2 213 21-259 2-218 (245)
8 PRK06557 L-ribulose-5-phosphat 100.0 9.8E-42 2.1E-46 328.4 22.5 204 27-257 8-213 (221)
9 PRK08130 putative aldolase; Va 100.0 7.5E-42 1.6E-46 327.5 21.4 202 26-257 2-207 (213)
10 PRK08193 araD L-ribulose-5-pho 100.0 2.1E-41 4.6E-46 328.3 23.2 205 27-256 2-218 (231)
11 PRK12348 sgaE L-ribulose-5-pho 100.0 2.8E-41 6E-46 326.9 22.7 203 28-256 2-215 (228)
12 PRK06754 mtnB methylthioribulo 100.0 4.3E-41 9.2E-46 321.3 22.8 204 25-243 2-205 (208)
13 TIGR00760 araD L-ribulose-5-ph 100.0 5E-41 1.1E-45 325.7 22.9 204 27-256 2-219 (231)
14 PRK06486 hypothetical protein; 100.0 5.1E-41 1.1E-45 331.1 22.7 219 11-256 8-231 (262)
15 TIGR01086 fucA L-fuculose phos 100.0 8.1E-41 1.8E-45 320.6 21.5 197 27-255 2-201 (214)
16 PRK12347 sgbE L-ribulose-5-pho 100.0 1.3E-40 2.9E-45 322.6 23.2 204 27-256 2-219 (231)
17 PRK06755 hypothetical protein; 100.0 2E-40 4.4E-45 316.5 24.0 200 27-243 4-204 (209)
18 PRK07090 class II aldolase/add 100.0 7.9E-41 1.7E-45 329.4 21.8 217 15-258 16-233 (260)
19 PRK05834 hypothetical protein; 100.0 9E-41 1.9E-45 315.9 21.0 186 28-243 4-193 (194)
20 PRK13213 araD L-ribulose-5-pho 100.0 1.2E-40 2.6E-45 322.4 22.2 204 27-256 2-219 (231)
21 PRK07044 aldolase II superfami 100.0 1.7E-40 3.8E-45 325.8 22.7 209 24-258 11-222 (252)
22 PRK13145 araD L-ribulose-5-pho 100.0 2.3E-40 5E-45 321.6 22.7 206 26-256 2-219 (234)
23 PRK09220 methylthioribulose-1- 100.0 4.1E-40 8.9E-45 313.7 23.5 201 25-242 1-203 (204)
24 PRK06661 hypothetical protein; 100.0 2.8E-40 6E-45 320.5 21.2 200 29-255 2-206 (231)
25 PRK06208 hypothetical protein; 100.0 4.5E-40 9.8E-45 325.8 21.6 206 26-259 39-248 (274)
26 TIGR03328 salvage_mtnB methylt 100.0 9.4E-40 2E-44 308.6 21.6 190 34-239 1-192 (193)
27 PRK08333 L-fuculose phosphate 100.0 1.6E-39 3.5E-44 304.7 21.7 179 28-238 2-183 (184)
28 PRK06357 hypothetical protein; 100.0 2.2E-39 4.8E-44 311.2 22.1 193 27-243 3-204 (216)
29 PRK08660 L-fuculose phosphate 100.0 2.9E-39 6.2E-44 302.3 21.5 180 30-241 1-180 (181)
30 COG0235 AraD Ribulose-5-phosph 100.0 3.4E-39 7.4E-44 310.5 18.7 200 24-251 2-205 (219)
31 TIGR02624 rhamnu_1P_ald rhamnu 100.0 1.1E-38 2.3E-43 315.5 20.7 215 27-259 6-261 (270)
32 TIGR01691 enolase-ppase 2,3-di 100.0 6.8E-40 1.5E-44 315.6 11.4 123 284-430 1-123 (220)
33 PRK03634 rhamnulose-1-phosphat 100.0 1.3E-38 2.8E-43 315.8 20.5 217 28-257 7-261 (274)
34 PF00596 Aldolase_II: Class II 100.0 4.7E-38 1E-42 293.6 20.2 180 32-235 1-184 (184)
35 KOG2631 Class II aldolase/addu 100.0 3.9E-32 8.5E-37 252.3 21.5 210 21-243 11-226 (238)
36 PRK08324 short chain dehydroge 100.0 1.9E-28 4.2E-33 270.7 13.4 261 28-312 14-303 (681)
37 TIGR02632 RhaD_aldol-ADH rhamn 99.9 3.7E-27 8.1E-32 260.3 18.1 253 31-310 2-292 (676)
38 COG3347 Uncharacterized conser 99.7 4.2E-16 9.1E-21 157.4 11.7 246 33-311 19-299 (404)
39 KOG3699 Cytoskeletal protein A 99.5 4.5E-14 9.9E-19 149.3 9.0 157 77-253 87-247 (598)
40 KOG3699 Cytoskeletal protein A 97.6 2.7E-05 5.9E-10 83.6 2.4 175 43-244 363-541 (598)
41 PF13419 HAD_2: Haloacid dehal 97.2 0.00075 1.6E-08 60.2 6.1 34 397-430 72-105 (176)
42 PRK10826 2-deoxyglucose-6-phos 97.1 0.0031 6.8E-08 60.2 9.9 30 400-429 90-119 (222)
43 PRK13222 phosphoglycolate phos 96.9 0.0083 1.8E-07 56.8 10.3 42 389-430 79-121 (226)
44 TIGR02253 CTE7 HAD superfamily 96.5 0.026 5.6E-07 53.4 11.2 29 401-429 93-121 (221)
45 TIGR01428 HAD_type_II 2-haloal 96.2 0.045 9.7E-07 51.1 10.7 29 401-429 91-119 (198)
46 PLN02954 phosphoserine phospha 96.2 0.045 9.8E-07 52.0 10.7 29 401-429 83-111 (224)
47 PRK13223 phosphoglycolate phos 96.1 0.041 8.8E-07 54.8 10.5 42 388-429 87-128 (272)
48 TIGR01449 PGP_bact 2-phosphogl 95.9 0.052 1.1E-06 50.9 9.4 40 390-429 72-112 (213)
49 TIGR02252 DREG-2 REG-2-like, H 95.8 0.21 4.5E-06 46.7 13.3 28 401-428 104-131 (203)
50 TIGR02247 HAD-1A3-hyp Epoxide 95.8 0.021 4.6E-07 53.8 6.5 30 400-429 92-121 (211)
51 PRK13288 pyrophosphatase PpaX; 95.8 0.067 1.5E-06 50.6 9.9 29 401-429 81-109 (214)
52 COG0546 Gph Predicted phosphat 95.6 0.11 2.4E-06 49.8 10.4 29 400-428 87-115 (220)
53 PLN03243 haloacid dehalogenase 95.5 0.08 1.7E-06 52.5 9.6 29 401-429 108-136 (260)
54 PRK13226 phosphoglycolate phos 95.4 0.14 3E-06 49.4 10.7 30 400-429 93-122 (229)
55 TIGR01549 HAD-SF-IA-v1 haloaci 95.3 0.042 9.1E-07 49.0 6.3 32 400-431 62-93 (154)
56 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.3 0.24 5.1E-06 45.8 11.5 29 401-429 79-107 (201)
57 PRK10748 flavin mononucleotide 95.2 0.11 2.4E-06 50.3 9.3 29 401-430 112-140 (238)
58 PRK09552 mtnX 2-hydroxy-3-keto 95.2 0.13 2.7E-06 49.2 9.5 29 401-429 73-101 (219)
59 TIGR00338 serB phosphoserine p 95.2 0.14 3.1E-06 48.4 9.8 28 401-428 84-111 (219)
60 TIGR03351 PhnX-like phosphonat 95.2 0.14 3.1E-06 48.4 9.7 31 400-430 85-115 (220)
61 TIGR02009 PGMB-YQAB-SF beta-ph 95.0 0.14 3E-06 46.8 8.8 28 400-427 86-113 (185)
62 TIGR01422 phosphonatase phosph 94.9 0.16 3.4E-06 49.5 9.5 30 400-429 97-126 (253)
63 PLN02770 haloacid dehalogenase 94.8 0.26 5.6E-06 48.2 10.6 30 400-429 106-135 (248)
64 TIGR01509 HAD-SF-IA-v3 haloaci 94.7 0.074 1.6E-06 48.3 6.3 30 401-430 84-113 (183)
65 PRK11587 putative phosphatase; 94.6 0.2 4.3E-06 47.7 9.2 30 400-429 81-110 (218)
66 PRK14988 GMP/IMP nucleotidase; 94.6 0.25 5.4E-06 47.6 9.8 29 400-428 91-119 (224)
67 PRK13225 phosphoglycolate phos 94.5 0.2 4.4E-06 50.1 9.3 30 400-429 140-169 (273)
68 cd01427 HAD_like Haloacid deha 94.4 0.059 1.3E-06 45.4 4.5 31 398-428 20-50 (139)
69 PRK06698 bifunctional 5'-methy 94.3 0.13 2.9E-06 54.9 7.8 31 400-430 328-358 (459)
70 TIGR01489 DKMTPPase-SF 2,3-dik 94.2 0.22 4.8E-06 45.4 8.3 29 401-429 71-99 (188)
71 PLN02940 riboflavin kinase 94.2 0.21 4.6E-06 52.3 9.0 30 400-429 91-120 (382)
72 PRK09456 ?-D-glucose-1-phospha 93.6 0.31 6.7E-06 45.7 8.1 28 402-429 84-111 (199)
73 TIGR01548 HAD-SF-IA-hyp1 haloa 93.6 0.8 1.7E-05 42.7 10.9 31 399-429 103-133 (197)
74 TIGR01990 bPGM beta-phosphoglu 93.6 0.27 5.9E-06 44.9 7.5 28 401-428 86-113 (185)
75 PRK09449 dUMP phosphatase; Pro 93.5 1.3 2.8E-05 41.9 12.4 28 401-429 94-121 (224)
76 PLN02575 haloacid dehalogenase 93.1 0.52 1.1E-05 49.5 9.6 28 401-428 215-242 (381)
77 TIGR03333 salvage_mtnX 2-hydro 93.1 0.22 4.7E-06 47.5 6.4 30 400-429 68-97 (214)
78 PRK13478 phosphonoacetaldehyde 93.1 0.43 9.3E-06 47.0 8.6 30 400-429 99-128 (267)
79 COG1011 Predicted hydrolase (H 92.2 0.71 1.5E-05 43.6 8.5 28 400-428 97-124 (229)
80 PRK13582 thrH phosphoserine ph 91.8 1 2.2E-05 42.0 8.9 29 401-430 67-95 (205)
81 PRK11133 serB phosphoserine ph 91.5 1.2 2.6E-05 45.8 9.8 29 401-429 180-208 (322)
82 PF00702 Hydrolase: haloacid d 91.4 1.2 2.7E-05 41.1 9.1 32 396-427 121-152 (215)
83 PRK10563 6-phosphogluconate ph 91.0 1.1 2.4E-05 42.4 8.4 27 400-429 86-112 (221)
84 TIGR02254 YjjG/YfnB HAD superf 90.5 4.5 9.8E-05 37.9 12.1 28 401-429 96-123 (224)
85 PRK11590 hypothetical protein; 90.2 3 6.6E-05 39.6 10.6 38 389-429 85-123 (211)
86 PLN02919 haloacid dehalogenase 89.4 2.2 4.7E-05 50.7 10.7 30 400-429 159-188 (1057)
87 PHA02597 30.2 hypothetical pro 89.1 1.6 3.4E-05 40.6 7.7 27 401-428 73-99 (197)
88 TIGR01545 YfhB_g-proteo haloac 89.1 1.7 3.6E-05 41.7 8.0 51 375-429 71-122 (210)
89 PLN02779 haloacid dehalogenase 88.3 1.6 3.6E-05 43.7 7.6 28 402-429 144-171 (286)
90 PF12710 HAD: haloacid dehalog 88.1 1.6 3.5E-05 39.8 6.9 24 405-428 92-115 (192)
91 TIGR01488 HAD-SF-IB Haloacid D 87.8 0.97 2.1E-05 40.9 5.2 28 402-429 73-100 (177)
92 COG0637 Predicted phosphatase/ 87.5 4 8.7E-05 39.3 9.5 39 390-428 74-112 (221)
93 TIGR01662 HAD-SF-IIIA HAD-supe 87.3 0.64 1.4E-05 40.4 3.6 39 392-430 15-53 (132)
94 TIGR01490 HAD-SF-IB-hyp1 HAD-s 87.0 1.4 3E-05 40.9 5.9 31 398-428 83-113 (202)
95 TIGR01993 Pyr-5-nucltdase pyri 82.7 5.5 0.00012 36.5 7.7 28 400-430 82-109 (184)
96 PRK10725 fructose-1-P/6-phosph 81.2 19 0.00041 32.8 10.7 27 401-429 87-113 (188)
97 TIGR00213 GmhB_yaeD D,D-heptos 79.5 2.1 4.5E-05 39.5 3.6 38 393-430 17-54 (176)
98 COG0560 SerB Phosphoserine pho 78.6 20 0.00043 34.5 10.3 29 401-429 76-104 (212)
99 TIGR01454 AHBA_synth_RP 3-amin 78.1 2.5 5.4E-05 39.5 3.8 30 400-429 73-102 (205)
100 TIGR01656 Histidinol-ppas hist 76.7 2.8 6.1E-05 37.5 3.5 28 402-429 27-54 (147)
101 PRK06769 hypothetical protein; 75.2 3.2 6.9E-05 38.4 3.6 27 402-428 28-54 (173)
102 PRK08942 D,D-heptose 1,7-bisph 74.6 3 6.4E-05 38.5 3.2 36 394-429 21-56 (181)
103 TIGR01664 DNA-3'-Pase DNA 3'-p 73.6 3.7 8E-05 37.9 3.6 27 403-429 43-69 (166)
104 TIGR01261 hisB_Nterm histidino 72.8 4 8.6E-05 37.5 3.6 28 402-429 29-56 (161)
105 TIGR01493 HAD-SF-IA-v2 Haloaci 72.3 6.9 0.00015 35.3 5.1 22 401-429 89-110 (175)
106 TIGR01685 MDP-1 magnesium-depe 67.8 5.6 0.00012 37.2 3.5 28 400-427 43-70 (174)
107 TIGR01668 YqeG_hyp_ppase HAD s 67.0 5.8 0.00013 36.5 3.3 27 402-428 43-69 (170)
108 TIGR01662 HAD-SF-IIIA HAD-supe 64.7 4.5 9.7E-05 35.0 2.0 32 285-316 1-37 (132)
109 smart00577 CPDc catalytic doma 64.4 6.9 0.00015 35.1 3.2 33 397-430 40-72 (148)
110 PLN02811 hydrolase 62.5 8 0.00017 36.7 3.5 30 400-429 76-105 (220)
111 TIGR01681 HAD-SF-IIIC HAD-supe 62.5 5.2 0.00011 35.1 2.0 28 402-429 29-56 (128)
112 TIGR01459 HAD-SF-IIA-hyp4 HAD- 62.2 4.8 0.0001 39.0 1.9 42 380-429 10-51 (242)
113 smart00775 LNS2 LNS2 domain. T 59.2 7.2 0.00016 35.7 2.4 41 286-335 1-41 (157)
114 TIGR01689 EcbF-BcbF capsule bi 58.9 9.2 0.0002 34.0 3.0 13 285-297 2-14 (126)
115 TIGR01458 HAD-SF-IIA-hyp3 HAD- 57.3 51 0.0011 32.4 8.3 34 284-317 1-34 (257)
116 TIGR01664 DNA-3'-Pase DNA 3'-p 56.8 11 0.00024 34.7 3.3 20 278-297 7-26 (166)
117 PRK08324 short chain dehydroge 56.6 23 0.00049 40.0 6.3 52 198-249 345-396 (681)
118 PF13344 Hydrolase_6: Haloacid 55.4 15 0.00033 31.0 3.6 38 385-430 5-42 (101)
119 PF14226 DIOX_N: non-haem diox 51.9 9.4 0.0002 32.3 1.8 35 174-211 1-38 (116)
120 TIGR01670 YrbI-phosphatas 3-de 46.0 13 0.00029 33.5 2.0 14 284-297 1-14 (154)
121 TIGR01452 PGP_euk phosphoglyco 45.0 15 0.00032 36.5 2.3 38 384-429 8-45 (279)
122 TIGR00213 GmhB_yaeD D,D-heptos 43.1 19 0.00041 33.0 2.5 28 401-428 126-154 (176)
123 TIGR02632 RhaD_aldol-ADH rhamn 42.9 46 0.00099 37.6 6.0 53 198-250 337-389 (676)
124 KOG2914 Predicted haloacid-hal 41.9 1.4E+02 0.003 29.2 8.3 44 401-444 91-141 (222)
125 TIGR01544 HAD-SF-IE haloacid d 41.9 27 0.00059 35.2 3.6 30 400-429 119-148 (277)
126 PRK10444 UMP phosphatase; Prov 41.8 34 0.00073 33.7 4.2 31 284-318 1-31 (248)
127 PF12689 Acid_PPase: Acid Phos 41.7 25 0.00054 32.8 3.1 36 393-428 36-71 (169)
128 PLN02645 phosphoglycolate phos 41.6 20 0.00044 36.3 2.7 50 369-428 21-70 (311)
129 PF08645 PNK3P: Polynucleotide 41.3 25 0.00054 32.2 3.0 30 403-432 30-59 (159)
130 PRK06769 hypothetical protein; 40.9 21 0.00046 32.9 2.5 28 401-428 113-140 (173)
131 TIGR02250 FCP1_euk FCP1-like p 40.6 28 0.00062 31.8 3.2 31 398-429 54-84 (156)
132 TIGR02251 HIF-SF_euk Dullard-l 39.8 30 0.00066 31.6 3.3 30 398-428 38-67 (162)
133 TIGR01663 PNK-3'Pase polynucle 37.7 33 0.00071 37.8 3.7 27 403-429 198-224 (526)
134 TIGR01668 YqeG_hyp_ppase HAD s 36.9 29 0.00064 31.8 2.7 33 282-316 23-55 (170)
135 PF06888 Put_Phosphatase: Puta 36.5 1.7E+02 0.0037 28.8 8.1 37 286-322 2-38 (234)
136 PRK13031 preprotein translocas 35.9 19 0.00042 33.0 1.3 23 293-320 98-120 (149)
137 PHA02530 pseT polynucleotide k 35.6 1.1E+02 0.0024 30.2 6.9 27 400-426 271-297 (300)
138 COG4817 DNA-binding ferritin-l 35.4 20 0.00044 31.0 1.3 41 380-421 31-71 (111)
139 PF01968 Hydantoinase_A: Hydan 34.8 18 0.00039 36.5 1.0 32 280-311 73-104 (290)
140 COG1877 OtsB Trehalose-6-phosp 34.7 23 0.0005 35.5 1.8 17 283-299 17-33 (266)
141 PRK11009 aphA acid phosphatase 34.4 60 0.0013 31.9 4.6 32 401-432 187-218 (237)
142 PRK05446 imidazole glycerol-ph 34.3 47 0.001 34.7 4.0 30 400-429 28-57 (354)
143 TIGR01210 conserved hypothetic 34.0 1.1E+02 0.0024 31.1 6.7 92 359-450 185-280 (313)
144 PRK00192 mannosyl-3-phosphogly 33.9 37 0.0008 33.4 3.1 35 282-319 2-36 (273)
145 TIGR01754 flav_RNR ribonucleot 33.6 37 0.00079 30.0 2.7 36 404-439 66-102 (140)
146 PF03031 NIF: NLI interacting 33.0 27 0.00059 31.2 1.8 18 285-302 1-18 (159)
147 PRK11009 aphA acid phosphatase 32.6 43 0.00093 32.9 3.3 31 398-428 110-140 (237)
148 TIGR00685 T6PP trehalose-phosp 31.6 39 0.00084 32.8 2.8 34 284-317 3-38 (244)
149 PLN02177 glycerol-3-phosphate 29.8 29 0.00063 37.9 1.6 24 284-311 22-45 (497)
150 PF03681 UPF0150: Uncharacteri 29.6 59 0.0013 23.3 2.8 27 200-226 13-40 (48)
151 TIGR01533 lipo_e_P4 5'-nucleot 29.5 48 0.001 33.2 3.0 51 283-334 74-131 (266)
152 KOG1615 Phosphoserine phosphat 28.9 68 0.0015 31.1 3.7 35 397-431 83-117 (227)
153 TIGR01681 HAD-SF-IIIC HAD-supe 28.7 48 0.001 28.9 2.6 15 285-299 1-15 (128)
154 TIGR01684 viral_ppase viral ph 27.9 52 0.0011 33.7 3.0 26 405-430 149-174 (301)
155 TIGR01686 FkbH FkbH-like domai 27.5 41 0.0009 34.1 2.3 29 401-429 30-58 (320)
156 PF13326 PSII_Pbs27: Photosyst 26.7 1.7E+02 0.0036 26.8 5.8 52 326-389 53-117 (145)
157 PRK09484 3-deoxy-D-manno-octul 26.3 34 0.00074 31.8 1.3 16 283-298 20-35 (183)
158 PRK09271 flavodoxin; Provision 26.2 74 0.0016 28.8 3.5 37 402-438 65-105 (160)
159 PLN02704 flavonol synthase 26.0 92 0.002 32.0 4.5 36 173-211 42-78 (335)
160 PRK01158 phosphoglycolate phos 25.9 40 0.00086 31.8 1.7 31 283-316 2-32 (230)
161 PF08235 LNS2: LNS2 (Lipin/Ned 25.8 31 0.00067 32.0 0.9 14 286-299 1-14 (157)
162 PLN02580 trehalose-phosphatase 25.5 37 0.0008 35.9 1.5 15 285-299 120-134 (384)
163 TIGR01458 HAD-SF-IIA-hyp3 HAD- 25.5 80 0.0017 31.0 3.8 29 402-430 21-49 (257)
164 TIGR01656 Histidinol-ppas hist 25.5 56 0.0012 29.0 2.5 15 285-299 1-15 (147)
165 PF06941 NT5C: 5' nucleotidase 25.2 99 0.0021 28.7 4.2 44 386-430 56-101 (191)
166 PRK03669 mannosyl-3-phosphogly 24.9 70 0.0015 31.4 3.3 35 280-317 3-37 (271)
167 PHA03398 viral phosphatase sup 24.0 70 0.0015 32.8 3.1 26 404-429 150-175 (303)
168 COG3347 Uncharacterized conser 24.0 1.5E+02 0.0033 31.3 5.6 53 198-250 336-388 (404)
169 PRK03600 nrdI ribonucleotide r 23.9 39 0.00084 30.3 1.1 38 401-439 56-93 (134)
170 PRK10187 trehalose-6-phosphate 23.6 82 0.0018 31.2 3.5 33 285-317 15-49 (266)
171 TIGR02245 HAD_IIID1 HAD-superf 23.6 60 0.0013 31.0 2.4 37 282-319 19-56 (195)
172 PHA02530 pseT polynucleotide k 23.5 79 0.0017 31.3 3.4 31 399-429 184-214 (300)
173 TIGR01459 HAD-SF-IIA-hyp4 HAD- 23.5 56 0.0012 31.5 2.2 33 282-318 6-38 (242)
174 PRK15126 thiamin pyrimidine py 23.5 67 0.0015 31.3 2.9 34 283-319 1-34 (272)
175 TIGR01689 EcbF-BcbF capsule bi 23.4 68 0.0015 28.5 2.6 30 401-430 23-52 (126)
176 PF06304 DUF1048: Protein of u 23.4 32 0.00069 29.7 0.4 42 380-421 26-67 (103)
177 PLN03017 trehalose-phosphatase 23.4 43 0.00092 35.2 1.4 15 285-299 112-126 (366)
178 PF01471 PG_binding_1: Putativ 23.1 70 0.0015 23.5 2.2 38 380-417 3-40 (57)
179 PF02358 Trehalose_PPase: Treh 22.9 37 0.0008 32.7 0.8 14 288-301 1-14 (235)
180 PRK10444 UMP phosphatase; Prov 22.9 56 0.0012 32.1 2.1 38 384-429 7-44 (248)
181 PF08282 Hydrolase_3: haloacid 22.6 73 0.0016 29.6 2.8 11 287-297 1-11 (254)
182 COG1952 SecB Preprotein transl 22.6 39 0.00085 31.2 0.9 22 293-319 101-122 (157)
183 PLN02205 alpha,alpha-trehalose 22.5 1.6E+02 0.0034 34.6 5.9 17 283-299 595-611 (854)
184 PF08823 PG_binding_2: Putativ 22.5 86 0.0019 25.3 2.7 36 381-416 17-52 (74)
185 TIGR00809 secB protein-export 22.4 42 0.00091 30.5 1.0 23 293-320 95-117 (140)
186 COG0241 HisB Histidinol phosph 22.3 1.5E+02 0.0033 28.1 4.8 46 400-445 29-78 (181)
187 TIGR01533 lipo_e_P4 5'-nucleot 22.1 1.1E+02 0.0024 30.7 4.0 39 388-428 106-144 (266)
188 cd06167 LabA_like LabA_like pr 22.1 81 0.0017 27.7 2.8 23 405-427 110-132 (149)
189 PLN00064 photosystem II protei 21.9 2.9E+02 0.0062 25.9 6.3 38 351-388 83-133 (166)
190 PLN02151 trehalose-phosphatase 21.8 48 0.001 34.7 1.4 15 285-299 99-113 (354)
191 COG0647 NagD Predicted sugar p 21.5 48 0.001 33.3 1.4 45 376-428 6-50 (269)
192 TIGR03123 one_C_unchar_1 proba 20.7 48 0.001 34.2 1.2 22 283-304 127-148 (318)
193 PLN02639 oxidoreductase, 2OG-F 20.6 1E+02 0.0023 31.6 3.7 36 173-211 37-73 (337)
194 COG0561 Cof Predicted hydrolas 20.6 56 0.0012 31.7 1.6 32 282-316 1-32 (264)
195 TIGR01511 ATPase-IB1_Cu copper 20.5 81 0.0017 34.8 3.0 30 400-429 403-432 (562)
196 TIGR02726 phenyl_P_delta pheny 20.1 60 0.0013 30.1 1.6 19 282-300 5-23 (169)
No 1
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=100.00 E-value=5.9e-49 Score=359.15 Aligned_cols=130 Identities=37% Similarity=0.597 Sum_probs=117.8
Q ss_pred CCeEEEEeeecccccccccccccchhhhhhhhhHHhhccCChhhHHHHHHHHHHhHHhhhcccCCcccCCCCCCChHHHH
Q 012894 283 FPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVAGAVPIPPGDAGKEEVI 362 (454)
Q Consensus 283 ~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (454)
+.++||||||||||||||||||||||++++|++|+++||++++++.++++++++.- .+.. .
T Consensus 3 m~kaiLlDIEGTv~~iSFVkdvlFPYa~~~lp~fv~e~~e~~~v~~~v~~v~~e~g----------------~~~s---~ 63 (229)
T COG4229 3 MVKAILLDIEGTVSPISFVKDVLFPYAARKLPDFVRENTEDSEVKKIVDEVLSEFG----------------IANS---E 63 (229)
T ss_pred chhhheeeccccccchhHHHhhhhHHHHHHhHHHHHhhccCChhhHHHHHHHHHhC----------------ccch---H
Confidence 45899999999999999999999999999999999999999999999999887631 1111 3
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCcccc
Q 012894 363 AALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSCR 431 (454)
Q Consensus 363 ~~~~~~v~~~~~~D~K~t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~~ 431 (454)
|++++.+..|+++|+|.||||+|||+||++||++|+||+|||||++++||+|++.|++||||||||+--
T Consensus 64 E~lva~~~~wiaed~K~t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~A 132 (229)
T COG4229 64 EALVALLLEWIAEDSKDTPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKA 132 (229)
T ss_pred HHHHHHHHHHHhcccccchHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchh
Confidence 566677777999999999999999999999999999999999999999999999999999999999853
No 2
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-45 Score=343.40 Aligned_cols=146 Identities=42% Similarity=0.654 Sum_probs=138.8
Q ss_pred CCCeEEEEeeecccccccccccccchhhhhhhhhHHhhccCChhhHHHHHHHHHHhHHhhhcccCCcccCCCCCCChHHH
Q 012894 282 LFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVAGAVPIPPGDAGKEEV 361 (454)
Q Consensus 282 ~~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (454)
-+.+.+||||||||||||||||+|||||.+|+++||+++|+++++++++.++|++.+++. ..+.+.+||++.+++.+..
T Consensus 6 ~~~k~~llDIegttt~isfVkd~LFpya~~nV~~~v~~~~~~~~~~~iv~~l~~~~~e~~-~~~~~~v~i~~~~~~~e~~ 84 (254)
T KOG2630|consen 6 RKWKELLLDIEGTTTSISFVKDVLFPYAKENVEELVQEPYETKIGQEIVSELRQRPEEQL-GSTNNIVPITDVTAAEEAD 84 (254)
T ss_pred hhhhhheEeEEeeecchHHHHHhhhHHHHHHHHHHhcCccccchHHHHHHHHhhhHHHHh-ccccCcccccccchhhhhh
Confidence 357899999999999999999999999999999999999999999999999999988887 7788999999888887777
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 362 IAALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 362 ~~~~~~~v~~~~~~D~K~t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
+. +++|+++++.|+|.|+||+|||+||++||++|++|+|+||||+|++++|+.+|+++|||||||+.
T Consensus 85 v~--v~~v~~~~~~d~k~t~~K~lQg~iw~~gy~sg~lk~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~ 151 (254)
T KOG2630|consen 85 VH--VANVEKLISFDEKRTILKQLQGRIWAAGYESGELKAHVYADVLPAIERWSGEGVRVYIYSSGSVA 151 (254)
T ss_pred hH--HHHHHHHHhhhcccchhHHHHHHHHHhhcccccccccccchhHHHHHHHhhcCceEEEEcCCcHH
Confidence 77 89999999999999999999999999999999999999999999999999999999999999975
No 3
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=100.00 E-value=4.2e-43 Score=336.49 Aligned_cols=200 Identities=22% Similarity=0.310 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCC
Q 012894 28 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPH 107 (454)
Q Consensus 28 ~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~ 107 (454)
+++|++|++++|+++++||+.+++||||+|++++ +.|||||||.++++++++||++||+||++++|.. +|
T Consensus 4 ~~~r~~i~~~~~~l~~~gl~~g~~GniS~r~~~~------~~~~ItpsG~~~~~l~~~div~vd~~g~~i~g~~-~p--- 73 (214)
T PRK06833 4 QKEREEIVAYGKKLISSGLTKGTGGNISIFNREQ------GLMAITPSGIDYFEIKPEDIVIMDLDGKVVEGER-KP--- 73 (214)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCceEEEEeCCC------CEEEEcCCCCChhhCCHHHEEEEcCCCCCcCCCC-CC---
Confidence 5689999999999999999999999999999764 5899999999999999999999999999998752 34
Q ss_pred CCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCcHH
Q 012894 108 KPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYENE 185 (454)
Q Consensus 108 ~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~e 185 (454)
|+|+.+|++|||.| |++||||+||++++++|+.+.. +|...+.+. .+++ .||+.+|. |++.+
T Consensus 74 -----s~E~~lH~~iy~~rpdv~aVvH~H~~~a~a~s~~~~~---lp~~~~~~~-~~~~-------~i~~~~y~~~gs~~ 137 (214)
T PRK06833 74 -----SSELDMHLIFYRNREDINAIVHTHSPYATTLACLGWE---LPAVHYLIA-VAGP-------NVRCAEYATFGTKE 137 (214)
T ss_pred -----CccHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHcCCC---CCcchhHHH-HHCC-------CeeeccCCCCChHH
Confidence 89999999999998 9999999999999999999863 554444332 2222 48888875 78999
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhhc
Q 012894 186 LTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKL 257 (454)
Q Consensus 186 la~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~ 257 (454)
+++.++++|++ .++|||+|||+++||+|+++||.+++.+|++|++++.++++|.+.. .+++++++++.
T Consensus 138 la~~v~~~l~~---~~~vll~nHGv~~~G~~~~eA~~~~e~lE~~a~~~~~a~~~G~~~~-l~~~~~~~~~~ 205 (214)
T PRK06833 138 LAENAFEAMED---RRAVLLANHGLLAGANNLKNAFNIAEEIEFCAEIYYQTKSIGEPKL-LPEDEMENMAE 205 (214)
T ss_pred HHHHHHHHhCc---CCEEEECCCCCEEEeCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHH
Confidence 99999999986 7999999999999999999999999999999999999999998855 67778887764
No 4
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=100.00 E-value=8.1e-43 Score=334.75 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCC
Q 012894 26 AVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPY 105 (454)
Q Consensus 26 ~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~ 105 (454)
..+++|++|++++|+++++||+.+++||||+|+++ .|||||||.++++++++||++||++|++++|. +|
T Consensus 2 ~~~~~~~~l~~~~r~l~~~Gl~~~~~GNiS~R~~~--------~~lItpsG~~~~~l~~~di~~vd~~G~~~~g~--~p- 70 (215)
T PRK08087 2 ERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQD--------GMLITPTGIPYEKLTESHIVFVDGNGKHEEGK--LP- 70 (215)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEcCC--------CEEEeCCCCChhhCCHHHEEEECCCCCCCCCC--CC-
Confidence 46889999999999999999999999999999976 58999999999999999999999999999864 34
Q ss_pred CCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCc
Q 012894 106 PHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYE 183 (454)
Q Consensus 106 ~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~ 183 (454)
|+|+.||+.|||.| |++||+|+||++++++|+.... +|.... +...+++ ..||+++|. |++
T Consensus 71 -------s~E~~lH~~iy~~rpdv~aViH~H~~~~~a~s~~~~~---ip~~~~-~~~~~~~------~~v~~~~y~~~gs 133 (215)
T PRK08087 71 -------SSEWRFHMAAYQTRPDANAVVHNHAVHCTAVSILNRP---IPAIHY-MIAAAGG------NSIPCAPYATFGT 133 (215)
T ss_pred -------ChhHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcCCC---CCcHHH-HHHHHcC------CCceeecCCCCCC
Confidence 89999999999998 9999999999999999998763 443333 2222211 148999975 889
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhhccc
Q 012894 184 NELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKLGL 259 (454)
Q Consensus 184 ~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~~~ 259 (454)
.++++.++++|++ .+++||+|||+++||+|+++|+.+++.+|++|++++.++++|.+....++++++++++.+
T Consensus 134 ~~la~~~~~~l~~---~~~vLl~nHGv~~~G~~~~~A~~~~e~lE~~a~~~~~a~~~g~~~~~l~~e~~~~~~~~~ 206 (215)
T PRK08087 134 RELSEHVALALKN---RKATLLQHHGLIACEVNLEKALWLAHEVEVLAQLYLKTLAITDPVPVLSDEEIAVVLEKF 206 (215)
T ss_pred HHHHHHHHHHhCc---CCEEEecCCCCEEEcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 9999999999986 699999999999999999999999999999999999999999876667888888886433
No 5
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=100.00 E-value=3.3e-42 Score=328.81 Aligned_cols=201 Identities=26% Similarity=0.429 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCCC
Q 012894 29 ETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPHK 108 (454)
Q Consensus 29 ~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~~ 108 (454)
+.|++|+++||+++++||+.+++||||+|++++ +.|||||||.++++++++|+++||++|++++|. +|
T Consensus 2 ~~~~~l~~~~r~l~~~Gl~~~~~GniS~R~~~~------~~~~itpsG~~~~~l~~~dlv~vd~~g~~~~g~--~p---- 69 (209)
T cd00398 2 KLKRKIIAACLLLDLYGWVTGTGGNVSARDRDR------GYFLITPSGVDYEEMTASDLVVVDAQGKVVEGK--KP---- 69 (209)
T ss_pred hHHHHHHHHHHHHHHcCCcccCCceEEEEeCCC------CEEEEeCCCCChHHCCHhhEEEEcCCCCCcCCC--CC----
Confidence 478999999999999999999999999999873 489999999999999999999999999999853 34
Q ss_pred CCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-C--CcH
Q 012894 109 PPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-A--YEN 184 (454)
Q Consensus 109 P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p--~~~ 184 (454)
|+|+.+|+.|||.| |++||+|+||+++++||+.+. +.+|..+.++...+.+ .||+++|. | +++
T Consensus 70 ----s~E~~lH~~iy~~rpdv~aViHtH~~~~~a~s~~~~--~~~p~~~~~~~~~~~~-------~ip~~~~~~~~~~~~ 136 (209)
T cd00398 70 ----SSETPLHLALYRARPDIGCIVHTHSTHATAVSQLKE--GLIPAGHTACAVYFTG-------DIPCTPYMTPETGED 136 (209)
T ss_pred ----CccHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHhCC--CCCCcchHHHHHHcCC-------CeeecCCcCCCccHH
Confidence 89999999999998 999999999999999999875 2456555555433322 49999986 6 788
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhhc
Q 012894 185 ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKL 257 (454)
Q Consensus 185 ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~ 257 (454)
++++.+++++++ .+++||+|||+++||+|+.+|+.+++.+|++|++++.++++|.+....++++++++.+
T Consensus 137 ~la~~~~~~l~~---~~~vll~nHG~~~~G~~~~~A~~~~~~lE~~a~~~~~a~~~g~~~~~l~~~~~~~~~~ 206 (209)
T cd00398 137 EIGTQRALGFPN---SKAVLLRNHGLFAWGPTLDEAFHLAVVLEVAAEIQLKALSMGGQLPPISLELLNKEYL 206 (209)
T ss_pred HHHHHHhcCCCc---CCEEEEcCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh
Confidence 888888888764 7999999999999999999999999999999999999999998766678888888764
No 6
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=100.00 E-value=5.3e-42 Score=329.53 Aligned_cols=201 Identities=21% Similarity=0.257 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYP 106 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~ 106 (454)
.+..|++|++++|+++++||+.+++||||+|++++ .|||||||.++++|+++||++||++|+++++.+.
T Consensus 4 ~~~~r~~i~~~~~~l~~~Gl~~g~~GNiS~R~~~~-------~~lITPsg~~~~~l~~~Div~vd~~G~~i~~~~~---- 72 (217)
T PRK05874 4 VDDPESAVLAAAKDMLRRGLVEGTAGNISARRSDG-------NVVITPSSVDYAEMLLHDLVLVDAGGAVLHAKDG---- 72 (217)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCC-------CEEEeCCCCChhhCCHHHEEEEcCCCCEecCCCC----
Confidence 46789999999999999999999999999999874 6999999999999999999999999999875311
Q ss_pred CCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCcH
Q 012894 107 HKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYEN 184 (454)
Q Consensus 107 ~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~ 184 (454)
.+||+|+.||+.|||.| |++||+|+||+++++||+.+.. +|....++...++| .+|+.+|. |++.
T Consensus 73 ---~kPssE~~~H~~iY~~rpdv~aViHtH~~~a~a~s~~~~~---l~~~~~~~~~~~~~-------~v~~~~y~~~gs~ 139 (217)
T PRK05874 73 ---RSPSTELNLHLACYRAFDDIGSVIHSHPVWATMFAVAHEP---IPACIDEFAIYCGG-------DVRCTEYAASGTP 139 (217)
T ss_pred ---CCCchhHHHHHHHHHhCCCCCEEEECCcHHHHHHHHcCCC---CCcchhHHHHHcCC-------ceeeecCCCCCcH
Confidence 13499999999999998 9999999999999999998763 44322222222322 38999986 7899
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhh
Q 012894 185 ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNF 255 (454)
Q Consensus 185 ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~ 255 (454)
+++++++++|++ .++|||+|||+++||+|+++|+.+++.+|++|++++.++++|.+..+ +++..|++
T Consensus 140 ela~~v~~~l~~---~~~vlL~nHGv~~~G~~l~~A~~~~e~lE~~a~~~~~a~~~G~~~~l-~~e~~~~~ 206 (217)
T PRK05874 140 EVGRNAVRALEG---RAAALIANHGLVAVGPRPDQVLRVTALVERTAQIVWGARALGGPVPI-PEDVCRNF 206 (217)
T ss_pred HHHHHHHHHhCc---CCEEEEcCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC-CHHHHHHh
Confidence 999999999986 79999999999999999999999999999999999999999988665 44566654
No 7
>PRK07490 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-42 Score=335.33 Aligned_cols=213 Identities=15% Similarity=0.169 Sum_probs=179.9
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCC-CcccC
Q 012894 21 YLEGRAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNG-TTLSS 99 (454)
Q Consensus 21 ~~~~~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG-~~v~g 99 (454)
+|-+++++++|++|++++|.++++||+.+++||||+|++++ ++.|||||||.++++|+++||++||+|| ++++|
T Consensus 2 ~~~~~~~~~~r~~l~~~~r~l~~~Gl~~g~~GniS~r~~~~-----~~~~lItpsG~~~~~l~~~div~vd~dg~~~~~g 76 (245)
T PRK07490 2 TMALSDEEQIRVDLAAAFRWIARLGMHEAVANHFSAAVSAD-----GKQFLLNPKWKHFSRIRASDLLLLDADDPSTAER 76 (245)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHcCCcccccceEEEEccCC-----CCeEEEcCCCCChhhCcHHHeEEEcCCCCcccCC
Confidence 46677889999999999999999999999999999999743 2589999999999999999999999999 56776
Q ss_pred CCCCCCCCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeee
Q 012894 100 PSPKPYPHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIE 178 (454)
Q Consensus 100 ~~~~P~~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~ 178 (454)
.+.+ ||+|+.||+.|||.| |++||||+||+++++||+.... .+|....+... +.| .||+++
T Consensus 77 ~~~~--------psse~~lH~~iYr~rpdv~aVvHtH~~~ata~s~~~~~--~lp~~~~~~~~-~~g-------~v~~~~ 138 (245)
T PRK07490 77 PDVP--------DATAWAIHGQIHRRLPHARCVMHVHSVYATALACLADP--TLPPIDQNTAR-FFN-------RVAVDT 138 (245)
T ss_pred CCCC--------CcHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHhcCC--CCCCccHHHHH-HcC-------Ceeecc
Confidence 5322 388999999999998 9999999999999999998642 24433333221 222 388864
Q ss_pred -CC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhh
Q 012894 179 -NT-AYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFK 256 (454)
Q Consensus 179 -~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~ 256 (454)
|. +++.++++.++++|++ .++|||+|||+++||+|+++|+.+++.+|++|++++.++++|.+...++++++++..
T Consensus 139 ~y~~~~~~ela~~v~~~l~~---~~avlL~nHG~v~~G~~~~eA~~~~e~lE~~a~~~l~a~~~G~~~~~l~~~~~~~~~ 215 (245)
T PRK07490 139 LYGGMALEEEGERLAGLLGD---KRRLLMGNHGVLVTGDTVAEAFDDLYYFERACQTYITALSTGQPLRVLSDAVAEKTA 215 (245)
T ss_pred CCCCcCcHHHHHHHHHHhCc---CCEEEECCCCcEEecCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 54 6788999999999986 799999999999999999999999999999999999999999886677787888865
Q ss_pred ccc
Q 012894 257 LGL 259 (454)
Q Consensus 257 ~~~ 259 (454)
+.+
T Consensus 216 ~~~ 218 (245)
T PRK07490 216 RDW 218 (245)
T ss_pred HHH
Confidence 433
No 8
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=100.00 E-value=9.8e-42 Score=328.36 Aligned_cols=204 Identities=21% Similarity=0.299 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYP 106 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~ 106 (454)
.+++|++|++++|+++++||+.+++||||+|++++ +.|||||||.++++++++||++||++|++++|. .+|
T Consensus 8 ~~~~~~~l~~~~r~l~~~Gl~~~~~GNiS~R~~~~------~~~~ItpsG~~~~~l~~~div~vd~~G~~~~g~-~~p-- 78 (221)
T PRK06557 8 VEKLREEVCKLHLELPKYGLVVWTSGNVSARDPGT------DLVVIKPSGVSYDDLTPEDMVVVDLDGNVVEGD-LKP-- 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCceEEEEeCCC------CEEEEeCCCCChhhCCHHHEEEEcCCCCCcCCC-CCC--
Confidence 56799999999999999999999999999999764 589999999999999999999999999999874 234
Q ss_pred CCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCcH
Q 012894 107 HKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYEN 184 (454)
Q Consensus 107 ~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~ 184 (454)
|+|+.+|+.|||.| |++||+|+||+++++||+++.. +|.....+...+++ .||+++|. |+++
T Consensus 79 ------s~E~~lH~~iy~~~pdv~aVvH~H~~~~~a~a~~~~~---~p~~~~~~~~~~~~-------~ip~~~y~~~g~~ 142 (221)
T PRK06557 79 ------SSDTASHLYVYRHMPDVGGVVHTHSTYATAWAARGEP---IPCVLTAMADEFGG-------PIPVGPFALIGDE 142 (221)
T ss_pred ------CccHHHHHHHHHhCCCCCEEEeeCcHHHHHHHHhCCC---CChhHHHHHHHhCC-------CeeccCCcCCCcH
Confidence 89999999999998 9999999999999999999763 44322222222322 49999986 7889
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhhc
Q 012894 185 ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKL 257 (454)
Q Consensus 185 ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~ 257 (454)
++++.++++|.. ++.+++||+|||+++||+|+++|+.+++.||++|++++.++++|.+.. +++++++++.+
T Consensus 143 ela~~i~~~l~~-~~~~~vll~nHG~~~~G~~~~eA~~~~e~lE~~a~~~~~a~~~G~~~~-l~~~~~~~~~~ 213 (221)
T PRK06557 143 AIGKGIVETLKG-GRSPAVLMQNHGVFTIGKDAEDAVKAAVMVEEVARTVHIARQLGEPIP-IPQEEIDRLYD 213 (221)
T ss_pred HHHHHHHHHhCc-CCCCEEEECCCCceEEcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHH
Confidence 999999999931 347999999999999999999999999999999999999999998875 56667777754
No 9
>PRK08130 putative aldolase; Validated
Probab=100.00 E-value=7.5e-42 Score=327.50 Aligned_cols=202 Identities=23% Similarity=0.348 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCC
Q 012894 26 AVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPY 105 (454)
Q Consensus 26 ~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~ 105 (454)
+++++|++|++++|+++++||+.+++||||+|++++ .|||||||.++++++|+||++||++|++++|. +|
T Consensus 2 ~~~~~~~~l~~~~~~l~~~gl~~~~~GNiS~R~~~~-------~~lItpsG~~~~~l~~~div~vd~~g~~~~g~--~p- 71 (213)
T PRK08130 2 TEQALREEIVRLGRSLFQRGYTVGSAGNISARLDDG-------GWLVTPTGSCLGRLDPARLSKVDADGNWLSGD--KP- 71 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCC-------CEEEeCCCCCccCCCHhHEEEECCCCCCCCCC--CC-
Confidence 567899999999999999999999999999999874 79999999999999999999999999998864 34
Q ss_pred CCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCC--CcccccchHHHHhhhhCCccccccceeeeeCC-C
Q 012894 106 PHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPM--SKEFRITHMEMIKGIKGHGYYDELVVPIIENT-A 181 (454)
Q Consensus 106 ~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~--~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p 181 (454)
|+|+.+|+.|||.| |++||+|+||+++++||+.+.. ...+|....+....+ | .||+++|. |
T Consensus 72 -------s~E~~~H~~iy~~rpdv~avvH~H~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~-g-------~i~v~~y~~~ 136 (213)
T PRK08130 72 -------SKEVPLHRAIYRNNPECGAVVHLHSTHLTALSCLGGLDPTNVLPPFTPYYVMRV-G-------HVPLIPYYRP 136 (213)
T ss_pred -------ChhHHHHHHHHHhCCCCCEEEECCcHHHHHHHhcCccccccCCCCCChhhhhcc-C-------ccceECCCCC
Confidence 89999999999999 9999999999999999998631 012332222222212 2 49999985 8
Q ss_pred CcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhhc
Q 012894 182 YENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKL 257 (454)
Q Consensus 182 ~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~ 257 (454)
++.++++.+++.+++ .++|||+|||+++||+|+++|+.+++.||++|++++.++.++ +. ..+++++++++.
T Consensus 137 g~~~la~~~~~~l~~---~~~vll~nHGvi~~G~s~~~A~~~~e~lE~~a~~~~~a~~~~-~~-~l~~~~~~~~~~ 207 (213)
T PRK08130 137 GDPAIAEALAGLAAR---YRAVLLANHGPVVWGSSLEAAVNATEELEETAKLILLLGGRP-PR-YLTDEEIAELRS 207 (213)
T ss_pred ChHHHHHHHHHHhcc---CCEEEEcCCCCeeeCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CC-CCCHHHHHHHHH
Confidence 899999999999986 799999999999999999999999999999999999998663 43 356678888764
No 10
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=100.00 E-value=2.1e-41 Score=328.28 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYP 106 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~ 106 (454)
.+++|++|+++||+|+++||+.+++||||+|++++ +.|||||||.++++|+++||++||+||++++|+ .+|
T Consensus 2 ~~~~r~~i~~~~~~l~~~gl~~g~~GNiS~r~~~~------~~~~ItpsG~~~~~l~~~Div~vd~dG~~~~g~-~kP-- 72 (231)
T PRK08193 2 LEDLKQEVLEANLALPKHGLVTFTWGNVSAIDRER------GLFVIKPSGVDYDKMTAEDMVVVDLEGNVVEGK-LKP-- 72 (231)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEecCC------CEEEEeCCCCChhhCChHHEEEECCCCCCCCCC-CCc--
Confidence 46799999999999999999999999999998764 489999999999999999999999999999875 234
Q ss_pred CCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-C---
Q 012894 107 HKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-A--- 181 (454)
Q Consensus 107 ~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p--- 181 (454)
|+|+.||+.|||.| |++||+|+|||++++||+.+.. +|..+......+.| .||+++|. +
T Consensus 73 ------SsE~~~H~~IYr~rpdv~AVvHtHsp~ata~s~~~~~---l~~~~~~~~~~~~~-------~ip~~~~~~~~~~ 136 (231)
T PRK08193 73 ------SSDTPTHLVLYKAFPEIGGIVHTHSRHATAWAQAGRD---IPALGTTHADYFYG-------DIPCTRKMTDEEI 136 (231)
T ss_pred ------CccHHHHHHHHHhCCCCcEEEecCcHHHHHHHhcCCC---CCcchHHHHHHhCC-------CcceecCCCcccc
Confidence 99999999999998 9999999999999999998753 44332221112222 38998864 2
Q ss_pred ---CcHHHHHHHHHHHhcC----CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhh
Q 012894 182 ---YENELTDSLAKAIDAY----PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRN 254 (454)
Q Consensus 182 ---~~~ela~~ia~~L~~~----p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~ 254 (454)
+..++++.++++|++. ++.+++||+|||+++||+|+++|+.+++.||++|++++.++++|.+....+++++++
T Consensus 137 ~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~v~~G~~l~eA~~~~e~lE~~a~~~~~a~~lg~~~~~l~~e~~~~ 216 (231)
T PRK08193 137 NGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGPFTWGKDAEDAVHNAVVLEEVAKMAYFTRQLNPQLPDMQQTLLDK 216 (231)
T ss_pred cccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 4567899999999852 345899999999999999999999999999999999999999995555666667776
Q ss_pred hh
Q 012894 255 FK 256 (454)
Q Consensus 255 ~~ 256 (454)
+.
T Consensus 217 ~~ 218 (231)
T PRK08193 217 HY 218 (231)
T ss_pred HH
Confidence 64
No 11
>PRK12348 sgaE L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=100.00 E-value=2.8e-41 Score=326.89 Aligned_cols=203 Identities=17% Similarity=0.242 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCC
Q 012894 28 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPH 107 (454)
Q Consensus 28 ~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~ 107 (454)
+++|++|++++|+|+++||+.+++||||+|++++ +.|+|||||.++++|+++||++||+||++++|+ .+|
T Consensus 2 ~~~~~~l~~~~~~l~~~Gl~~g~~GNiS~r~~~~------~~~lItPsG~~~~~l~~~dlv~vd~dG~~ieg~-~kp--- 71 (228)
T PRK12348 2 QKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRER------GLVVIKPSGVAYETMKADDMVVVDMSGKVVEGE-YRP--- 71 (228)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCCeEEEEeCCC------CEEEEeCCCCChhhCCHHHEEEECCCCCCCCCC-CCC---
Confidence 4689999999999999999999999999998764 589999999999999999999999999999875 234
Q ss_pred CCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccc-hHHHHhhhhCCccccccceeeeeCC-----
Q 012894 108 KPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRIT-HMEMIKGIKGHGYYDELVVPIIENT----- 180 (454)
Q Consensus 108 ~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~-~~e~~~~~~G~~~~~~~~VPiv~~~----- 180 (454)
|+|+.||+.|||.| |++||||+||||+++||+.+.. +|.. ..+.. .+.| .||++++.
T Consensus 72 -----ssE~~lH~~IYr~rpdv~aVvHtH~p~ata~a~~~~~---ip~~~~~~~~-~~~g-------~i~~~~~~~~~~~ 135 (228)
T PRK12348 72 -----SSDTATHLELYRRYPSLGGIVHTHSTHATAWAQAGLA---IPALGTTHAD-YFFG-------DIPCTRGLSEEEV 135 (228)
T ss_pred -----CccHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcCCC---CCCccHHHHH-HhCC-------CeeeecCCCchhh
Confidence 89999999999998 9999999999999999999764 3432 22222 1223 38887752
Q ss_pred --CCcHHHHHHHHHHHhcC--CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhh
Q 012894 181 --AYENELTDSLAKAIDAY--PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFK 256 (454)
Q Consensus 181 --p~~~ela~~ia~~L~~~--p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~ 256 (454)
++..++++.++++|++. .+.+++||+|||++++|+|+.+||.+++.||++|++++.++++|.+...++++.++++.
T Consensus 136 ~~~~~~~~~~~la~~l~~~~~~~~~avlL~nHG~v~~G~~l~eA~~~~~~lE~~a~~~~~a~~lg~~~~~~~~~~~~~~~ 215 (228)
T PRK12348 136 QGEYELNTGKVIIETLGNAEPLHTPGIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARGINPQLNHIDSYLMNKHF 215 (228)
T ss_pred ccchhhhHHHHHHHHHhhcCcccCcEEEEcCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Confidence 23346788899999862 13579999999999999999999999999999999999999999755556666666654
No 12
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=100.00 E-value=4.3e-41 Score=321.34 Aligned_cols=204 Identities=30% Similarity=0.503 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCC
Q 012894 25 RAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKP 104 (454)
Q Consensus 25 ~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P 104 (454)
++++..+++|++++|+++++||+.+++||||+|++++ ...|||||||.++++|+++|+++||++|+++++++.+|
T Consensus 2 ~~~~~~~~~l~~~~r~l~~~Gl~~g~~GNiSvR~~~~-----~~~~lITpSG~~~~~l~~~div~vd~~g~~~~~~~~kP 76 (208)
T PRK06754 2 KQLQRRWNELAEIKKELAARDWFPATSGNLSIKVSDD-----PLTFLVTASGKDKRKTTPEDFLLVDHDGKPVEETELKP 76 (208)
T ss_pred chHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEeCCC-----CCEEEEeCCCCCcccCCHHHEEEEcCCCCCCCCCCCCC
Confidence 3568899999999999999999999999999999763 13699999999999999999999999999998643334
Q ss_pred CCCCCCCCCccHHHHHHHHhhCCccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCCCCcH
Q 012894 105 YPHKPPKCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYEN 184 (454)
Q Consensus 105 ~~~~P~~~S~E~~lH~~IYr~rdv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~p~~~ 184 (454)
|+|+.||+.|||.+|++||||+||++++++++.......+++...++++.++.+.......||++++.++++
T Consensus 77 --------SsE~~lH~~iY~~pdv~aViHtH~~~at~~s~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~vpv~~~~~~~~ 148 (208)
T PRK06754 77 --------SAETLLHTHIYNNTNAGCVLHVHTVDNNVISELYGDDGAVTFQGQEIIKALGIWEENAEIHIPIIENHADIP 148 (208)
T ss_pred --------CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHhhcCCCCeeeecChhhhhccCccccCceEEEEEecCCCCHH
Confidence 999999999999789999999999999999988642224555455665444221100112489988656789
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012894 185 ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 243 (454)
Q Consensus 185 ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~ 243 (454)
+|++.+.++|+. +.+++||+|||+++||+|+.+|+.++|.+|++|++++.+++++.+
T Consensus 149 eLa~~v~~~l~~--~~~avLl~nHG~v~~G~~l~~A~~~~E~lE~~a~~~~~~~~~~~~ 205 (208)
T PRK06754 149 TLAEEFAKHIQG--DSGAVLIRNHGITVWGRDAFEAKKHLEAYEFLFSYHIKLLSIQGG 205 (208)
T ss_pred HHHHHHHHHhcc--CCcEEEECCCceEEEeCCHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999971 379999999999999999999999999999999999999987765
No 13
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=100.00 E-value=5e-41 Score=325.65 Aligned_cols=204 Identities=20% Similarity=0.272 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCC-CCcccCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN-GTTLSSPSPKPY 105 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~Vdld-G~~v~g~~~~P~ 105 (454)
.+++|++|++++|+|+++||+.+++||||+|++++ +.|||||||.++++|+++||++||+| |++++|. .+|
T Consensus 2 ~~~~~~ei~~~~~~l~~~gl~~~~~GNiS~R~~~~------~~~lITPsG~~~~~l~~~div~vdl~~G~~i~g~-~kp- 73 (231)
T TIGR00760 2 LEQLKKEVLEANLALPKHQLVTFTWGNVSAIDRER------GLVVIKPSGVEYDVMTADDMVVVDLETGNVVEGS-KKP- 73 (231)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCCCCeEEEEecCC------CEEEEeCCCCChhhCCHHHEEEEcCcCCccCCCC-CCC-
Confidence 45799999999999999999999999999998764 48999999999999999999999999 9999985 234
Q ss_pred CCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccch-HHHHhhhhCCccccccceeeeeCC---
Q 012894 106 PHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITH-MEMIKGIKGHGYYDELVVPIIENT--- 180 (454)
Q Consensus 106 ~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~-~e~~~~~~G~~~~~~~~VPiv~~~--- 180 (454)
|+|+.||+.|||+| |++||||+||||+++||+.+.. +|+.+ ++.. .+.| .||++++.
T Consensus 74 -------S~E~~lH~~IYr~rpdv~aVvHtH~p~ata~a~~~~~---lp~~~~~~~~-~~~g-------~ip~~~~~~~~ 135 (231)
T TIGR00760 74 -------SSDTPTHLALYRAFPSIGGIVHTHSRHATIWAQAGKD---IPALGTTHAD-YFYG-------TIPCTRPMTDE 135 (231)
T ss_pred -------CccHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcCCC---CCCcchHHHH-HhCC-------ceeeecCCCcc
Confidence 89999999999998 9999999999999999999864 44332 2222 2223 38887642
Q ss_pred ----CCcHHHHHHHHHHHhcC----CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchh
Q 012894 181 ----AYENELTDSLAKAIDAY----PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPT 252 (454)
Q Consensus 181 ----p~~~ela~~ia~~L~~~----p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~ 252 (454)
++..++++.+++++++. ++.+++||+|||++++|+|+.+||.+++.||++|++++.++++|.+...++++++
T Consensus 136 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~avlL~nHGvv~~G~~l~eA~~~~e~lE~~Ak~~~~a~~~g~~~~~~~~~~~ 215 (231)
T TIGR00760 136 EINGEYELETGKVIVETFEKRGIDPAQIPGVLVHSHGPFAWGKDAANAVHNAVVLEEVAYMALFSRQLNPQLPPMQQTLL 215 (231)
T ss_pred cccccchHhHHHHHHHHHhhccCCcccCCEEEEcCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 23457899999999862 1238999999999999999999999999999999999999999976666777777
Q ss_pred hhhh
Q 012894 253 RNFK 256 (454)
Q Consensus 253 ~~~~ 256 (454)
+++.
T Consensus 216 ~~~~ 219 (231)
T TIGR00760 216 DKHY 219 (231)
T ss_pred HHHH
Confidence 7664
No 14
>PRK06486 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-41 Score=331.09 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=184.4
Q ss_pred CcccccchhhhhcchhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEE
Q 012894 11 GAAAATHTQAYLEGRAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVL 90 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~V 90 (454)
-+|.++--.-.+.+.+++++|++|+.++|+++++||+.+++||||+|++++ ++.|||||||.++++|+++||++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~r~~l~~~~r~l~~~Gl~~gt~GNiSvR~~~~-----~~~~lITPsG~~~~~lt~eDlv~v 82 (262)
T PRK06486 8 DSAPPAGNRPLLDSDAVAQARVDLAACFRAAARHGLEEGICNHFSAVLPGH-----DDLFLVNPYGYAFSEITASDLLIC 82 (262)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHcCCccccCceEEEEecCC-----CCEEEEcCCCCCcccCcHHHeEEE
Confidence 344555555557777789999999999999999999999999999999763 258999999999999999999999
Q ss_pred eCCCCcccCCCCCCCCCCCCCCC-ccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCcc
Q 012894 91 SGNGTTLSSPSPKPYPHKPPKCS-DCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGY 168 (454)
Q Consensus 91 dldG~~v~g~~~~P~~~~P~~~S-~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~ 168 (454)
|++|++++|+ .+| | +|+.||+.|||.| |++||||+||+|+++||+... .++++..+++.+. .|
T Consensus 83 d~dG~~veg~-~kP--------s~~e~~lH~~IYr~rpDv~aVvHtHs~~a~a~s~~~~--~~l~~~~~~~~~~-~g--- 147 (262)
T PRK06486 83 DFDGNVLAGR-GEP--------EATAFFIHARIHRAIPRAKAAFHTHMPYATALSLTEG--RPLTTLGQTALKF-YG--- 147 (262)
T ss_pred CCCCCCcCCC-CCC--------ChhHHHHHHHHHHhCCCCCEEEEeCChHHhhhhhcCC--CCCCcccHHHHHH-CC---
Confidence 9999999875 244 5 4689999999998 999999999999999999842 2345445555432 23
Q ss_pred ccccceeeee-C--CCCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 012894 169 YDELVVPIIE-N--TAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWS 245 (454)
Q Consensus 169 ~~~~~VPiv~-~--~p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~ 245 (454)
.||+++ + .+.+.++++.++++|++ .++|||+|||+++||+|+++||.+++.+|++|++++.++++|.+..
T Consensus 148 ----~i~~~~~~~~~~~s~ela~~va~al~~---~~avLL~nHG~v~~G~~l~eA~~~~~~lE~~a~i~~~a~~~G~~~~ 220 (262)
T PRK06486 148 ----RTAVDEDYNGLALDAAEGDRIARAMGD---ADIVFLKNHGVMVCGPRIAEAWDDLYYLERACEVQVLAMSTGRPLV 220 (262)
T ss_pred ----CeeeccCCCCccCchhHHHHHHHHhCc---CCEEEECCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 377766 3 24578999999999986 7999999999999999999999999999999999999999998877
Q ss_pred CCCCchhhhhh
Q 012894 246 TPNHGPTRNFK 256 (454)
Q Consensus 246 ~~~~~~~~~~~ 256 (454)
.++++.++++.
T Consensus 221 ~~~~~~~~~~~ 231 (262)
T PRK06486 221 PVDPAIAAAVA 231 (262)
T ss_pred CCCHHHHHHHH
Confidence 77887777764
No 15
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=100.00 E-value=8.1e-41 Score=320.64 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYP 106 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~ 106 (454)
..++|++|++++|+|+++||+.+++||||+|+++ .|||||||+++++|+|+||++||+||++++|. +|
T Consensus 2 ~~~~~~~i~~~~~~l~~~Gl~~g~~GNiS~R~~~--------~~lItPsG~~~~~l~~~div~vd~~G~~~~g~--kp-- 69 (214)
T TIGR01086 2 RRELSQRIIDTCLEMTTLGLNQGTAGNVSVRRYQ--------GMLITPTGGPYYEKLTESIVYVIDGGGKEEEK--LP-- 69 (214)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcceEEEECCC--------CEEEECCCCCcccCCHHHEEEEcCCCCCCCCC--CC--
Confidence 4689999999999999999999999999999875 38899999999999999999999999998863 45
Q ss_pred CCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCcH
Q 012894 107 HKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYEN 184 (454)
Q Consensus 107 ~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~ 184 (454)
|+|+.+|..||+.| |++||||+||++++++++.+.. +|+..+++....++ .||+++|. |++.
T Consensus 70 ------sse~~~H~~iy~~rpdv~avvH~H~~~~~~~~~~~~~---lp~~~~~~~~~~~~-------~i~~v~y~~~gs~ 133 (214)
T TIGR01086 70 ------SSEWWFHLMAYYQRRPDNAVVHNHHIVCATASILLKR---IPAIHYMVAASGGG-------NIPCVPYATFGST 133 (214)
T ss_pred ------ChhHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHcCCC---CCcchHHHHHhcCC-------CccccCCCCCChH
Confidence 89999999999997 9999999999999999988753 45445555432211 38889886 7899
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCchhhhh
Q 012894 185 ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGL-DWSTPNHGPTRNF 255 (454)
Q Consensus 185 ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~-~~~~~~~~~~~~~ 255 (454)
++++.+++.+++ .++|||+|||+++||+|+++|+.+++.+|++|++++.++.+|+ +..++++ ++.++
T Consensus 134 ~la~~v~~~~~~---~~~vLL~nHG~~~~G~~l~eA~~~~e~lE~~a~~~~~a~~~g~~~~~l~~~-~~~~~ 201 (214)
T TIGR01086 134 KLASEVVAGILK---SKAILLLHHGLIIACENLLKALWLAAEVEVLAAQYLKTLLAITDPPPLLSD-EMIVV 201 (214)
T ss_pred HHHHHHHHHhhh---CCEEehhcCCCEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCHH-HHHHH
Confidence 999999999986 6899999999999999999999999999999999999998885 6555554 55544
No 16
>PRK12347 sgbE L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=100.00 E-value=1.3e-40 Score=322.64 Aligned_cols=204 Identities=19% Similarity=0.270 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeC-CCCcccCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSG-NGTTLSSPSPKPY 105 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~Vdl-dG~~v~g~~~~P~ 105 (454)
.+++|++|+++||+|+++||+.+++||||+|++++ +.|||||||+++++|+++||++||+ +|++++|. .+|
T Consensus 2 ~~~~~~~iv~~~~~l~~~gl~~~t~GNiS~R~~~~------~~~~ItPsG~~~~~l~~~div~vd~~~G~~i~g~-~kp- 73 (231)
T PRK12347 2 LEQLKADVLAANLALPAHHLVTFTWGNVSAVDETR------QLMVIKPSGVEYDVMTADDMVVVEIASGKVVEGS-KKP- 73 (231)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCCCceEEEEecCC------CeEEEeCCCCCcccCCHHHEEEEEcCCCcCCCCC-CCc-
Confidence 56789999999999999999999999999998763 4799999999999999999999999 99999875 234
Q ss_pred CCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccc-hHHHHhhhhCCccccccceeeeeCC---
Q 012894 106 PHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRIT-HMEMIKGIKGHGYYDELVVPIIENT--- 180 (454)
Q Consensus 106 ~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~-~~e~~~~~~G~~~~~~~~VPiv~~~--- 180 (454)
|+|+.||+.|||.| |++||||+||+++++||+++.+ +|+. ..+.. .+.| .||+.++.
T Consensus 74 -------S~E~~lH~~iYr~rpdv~aViHtHs~~ata~a~~~~~---lp~~~~~~~~-~~~g-------~Ip~~~~~~~~ 135 (231)
T PRK12347 74 -------SSDTPTHLALYRRYPEIGGIVHTHSRHATIWSQAGLD---LPAWGTTHAD-YFYG-------AIPCTRLMTAE 135 (231)
T ss_pred -------CccHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcCCC---CCCcchHHHH-HhCC-------ceeeecccCch
Confidence 89999999999998 9999999999999999999764 4332 22222 2323 38888652
Q ss_pred ----CCcHHHHHHHHHHHhcC----CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchh
Q 012894 181 ----AYENELTDSLAKAIDAY----PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPT 252 (454)
Q Consensus 181 ----p~~~ela~~ia~~L~~~----p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~ 252 (454)
++..++++.+++++++. ++.++|||+|||++++|+|+.+||.+++.||++|++++.++++|.....++++++
T Consensus 136 ~~a~~~~~e~~~~va~~l~~~~~~~~~~~avLL~NHG~v~~G~~l~eA~~~~e~lE~~A~~~~~a~~lg~~~~~~~~~~~ 215 (231)
T PRK12347 136 EINGEYEYQTGEVIIETFEERGISPAQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPAMQNELL 215 (231)
T ss_pred hcccccchhhHHHHHHHHhhccccccCCCEEEEcCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHH
Confidence 34557889999999742 3568999999999999999999999999999999999999999955555666677
Q ss_pred hhhh
Q 012894 253 RNFK 256 (454)
Q Consensus 253 ~~~~ 256 (454)
+++.
T Consensus 216 ~~~~ 219 (231)
T PRK12347 216 DKHY 219 (231)
T ss_pred HHHH
Confidence 7664
No 17
>PRK06755 hypothetical protein; Validated
Probab=100.00 E-value=2e-40 Score=316.52 Aligned_cols=200 Identities=19% Similarity=0.282 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYP 106 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~ 106 (454)
+.+.|++|++++|.|+++||+.+++||+|+|.+++ ...|+|||||.++++++|+|+++||++|+.+.+++.+
T Consensus 4 ~~~~~~~l~~~~~~l~~rGw~~gtsGNlSv~~~~~-----~~~~~ITpSG~~k~~L~~eDiv~vd~~g~~~~~~~~k--- 75 (209)
T PRK06755 4 FLKKWNELKDVKSELALRDWFYGTKISLSLCTSKE-----PLTFLVNVEGRDKGLFSEEDFIVVNCMCEPVFENEEK--- 75 (209)
T ss_pred HHHHHHHHHHHHHHHHHCCCCccCCCCeEEEecCC-----CcEEEEeCCCCCcccCCcccEEEEeCCCCCccCCCCC---
Confidence 56789999999999999999999999999987653 1369999999999999999999999999988433223
Q ss_pred CCCCCCCccHHHHHHHHhhCCccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCcHH
Q 012894 107 HKPPKCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYENE 185 (454)
Q Consensus 107 ~~P~~~S~E~~lH~~IYr~rdv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~e 185 (454)
||+|+.||+.|||.++++||||+||++++++|+.......+|+...+|++.+++ .+.....||+++|. +++++
T Consensus 76 -----PSsE~~~H~~IY~~~~~~AVvHtHs~~at~ls~~~~~~~~i~~~~~e~~~~~g~-~~~~~~~IPiv~~~~~~~~~ 149 (209)
T PRK06755 76 -----PAAESFMHADIYKKSSAECILQVQTVDSHLISELYGEEGEVTFDKRSVERVFGK-EGITEMTIPIVEDEKKFADL 149 (209)
T ss_pred -----cCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHhhccCCcccccchHHHHHhcc-cCCCceEEEEEeCCCchhHH
Confidence 499999999999988999999999999999999832212366566788877754 23222359999986 66788
Q ss_pred HHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012894 186 LTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 243 (454)
Q Consensus 186 la~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~ 243 (454)
+++.+.+.+++ .++|||+|||+++||+|+++|+.++|.+|++|++++++++++..
T Consensus 150 la~~~~~~~~~---~~avLl~~HGv~~~G~~l~eA~~~~E~lE~l~~~~~~~~~l~~~ 204 (209)
T PRK06755 150 LENNVPNFIEG---GGVVLVHNYGMIVWGKTPEEAKKWLEGIEYLMNYHVKLLMIKGA 204 (209)
T ss_pred HHHHHHhhccC---CCEEEEcCCCeEEEcCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888888864 79999999999999999999999999999999999999987654
No 18
>PRK07090 class II aldolase/adducin domain protein; Provisional
Probab=100.00 E-value=7.9e-41 Score=329.42 Aligned_cols=217 Identities=17% Similarity=0.185 Sum_probs=175.2
Q ss_pred ccchhhhhcchhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCC
Q 012894 15 ATHTQAYLEGRAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNG 94 (454)
Q Consensus 15 ~~~~~~~~~~~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG 94 (454)
+|+++.--.+.++..+|++|+.++|+++++||+.+++||||+|++++ +.|||||||.++++|+|+||++||++|
T Consensus 16 ~~~~~~~~~~~~~~~~r~~l~~~~r~l~~~Gl~~g~~GNiS~R~~~~------~~~lItPsG~~~~~lt~~Div~vd~dG 89 (260)
T PRK07090 16 AQRQMDNELKDSGWTLRQKLALTCRILFDAGHDSGLAGQITARAEAP------GTYYTQRLGLGFDEITASNLLLVDEDL 89 (260)
T ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHHHHHcCCcccCCceEEEEeCCC------CEEEEeCCCCChhhCCHHHeEEECCCC
Confidence 44444443445588999999999999999999999999999999763 479999999999999999999999999
Q ss_pred CcccCCCCCCCCCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccc
Q 012894 95 TTLSSPSPKPYPHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELV 173 (454)
Q Consensus 95 ~~v~g~~~~P~~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~ 173 (454)
++++|.+ +| |+|+.||+.|||.| |++||||+||+++++||+.+.+ +|+.++.....+....+++ .
T Consensus 90 ~~v~G~~-kP--------s~E~~lH~~IYr~rPDv~AVvHtH~p~ata~s~~~~~---l~~~~~~~~~~~~~~~~~~--~ 155 (260)
T PRK07090 90 NVLDGEG-MP--------NPANRFHSWIYRARPDVNCIIHTHPPHVAALSMLEVP---LVVSHMDTCPLYDDCAFLK--D 155 (260)
T ss_pred CCCCCCC-CC--------ChhHHHHHHHHHhCCCCCEEEEeCCHHHHHHHhcCCC---CCccchhHHhhccceeecc--C
Confidence 9998752 34 89999999999998 9999999999999999998753 4433332211111111221 1
Q ss_pred eeeeeCCCCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhh
Q 012894 174 VPIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTR 253 (454)
Q Consensus 174 VPiv~~~p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~ 253 (454)
+|.+ |.+.++++.++++|++ .+++||+|||++++|+|+++||.+++.||++|++++.++++|.+..+ ++++++
T Consensus 156 ~~~i---p~~~~~a~~va~~l~~---~~avLL~nHGvi~~G~~l~eA~~~~~~LE~~A~i~l~a~~~G~~~~l-~~e~~~ 228 (260)
T PRK07090 156 WPGV---PVGNEEGEIISAALGD---KRAILLSHHGQLVAGKSIEEACVLALLIERAARLQLLAMAAGPIKPI-PPELAR 228 (260)
T ss_pred cCCc---CCChHHHHHHHHHhcc---CCEEEECCCCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC-CHHHHH
Confidence 3333 3345679999999986 68999999999999999999999999999999999999999987665 556888
Q ss_pred hhhcc
Q 012894 254 NFKLG 258 (454)
Q Consensus 254 ~~~~~ 258 (454)
+++..
T Consensus 229 ~~~~~ 233 (260)
T PRK07090 229 EAHDW 233 (260)
T ss_pred HHHHh
Confidence 87643
No 19
>PRK05834 hypothetical protein; Provisional
Probab=100.00 E-value=9e-41 Score=315.87 Aligned_cols=186 Identities=8% Similarity=0.102 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCC
Q 012894 28 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPH 107 (454)
Q Consensus 28 ~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~ 107 (454)
+++|++|++++|+++++||+.+++||||+|++++ .|+|||||.++++|+|+||++| +||+.+++. +|
T Consensus 4 ~~~~~el~~~~~~l~~~gl~~gt~GNiS~R~~~~-------~~lITPsG~~~~~l~~ediv~v-~~g~~~~~~--kP--- 70 (194)
T PRK05834 4 SNLIDELKSISLSMFRKNFFGLYHGSISAKIEAN-------QFIINKQNAIFDELDENSLIVL-YDKKDYRWK--EA--- 70 (194)
T ss_pred HHHHHHHHHHHHHHHHCCCcccccceEEEEeCCC-------cEEEeCCCCccccCCHHHeEEE-eCCCccCCC--CC---
Confidence 4799999999999999999999999999999763 7999999999999999999999 899877642 34
Q ss_pred CCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCc--
Q 012894 108 KPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYE-- 183 (454)
Q Consensus 108 ~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~-- 183 (454)
|+|++||+.|||.| |++||||+||+|++++|+.+. ++|+..+++.. +.| .||++++. +++
T Consensus 71 -----SsE~~~H~~IY~~rpdv~AVvHtHs~~ata~s~~~~---~i~~~~~~~~~-~~g-------~ipv~~~~~~~~~~ 134 (194)
T PRK05834 71 -----SIDSPIHASIYKNISEAKFIAYAMPPYTTAYSLRHN---KILPRDYFGYR-SLG-------EISIYDPKDFDDWY 134 (194)
T ss_pred -----CccHHHHHHHHhcCCCCCEEEEeCCHHHHHHHhcCC---CcCccChhHHh-hCC-------eeeecCccccchHH
Confidence 99999999999998 999999999999999999875 35555555543 222 38998865 443
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012894 184 NELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 243 (454)
Q Consensus 184 ~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~ 243 (454)
++++++++++|++ .+.+++||+|||+++||+|+++||.+++.||++|++++.++++|..
T Consensus 135 ~~la~~v~~~l~~-~~~~avLL~nHGvv~~G~~l~eA~~~~e~lE~~a~i~~~a~~~~~~ 193 (194)
T PRK05834 135 ERADTEILRYLQE-KNKNFVVIKGYGVYAYARDIYELAKKIAILENSCKILRLSDLMDRL 193 (194)
T ss_pred HhHHHHHHHHHhh-cCCCEEEEcCCcceEECCCHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 2578999999986 1235999999999999999999999999999999999999999863
No 20
>PRK13213 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=100.00 E-value=1.2e-40 Score=322.42 Aligned_cols=204 Identities=19% Similarity=0.227 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCC-CCcccCCCCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN-GTTLSSPSPKPY 105 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~Vdld-G~~v~g~~~~P~ 105 (454)
.+++|++|++++|+|+++||+.+++||||+|++++ +.|+|||||.++++|+++||++||++ |++++|+ .+|
T Consensus 2 ~~~~r~evv~~~~~l~~~gl~~gt~GNiS~r~~~~------~~~~ITpsg~~~~~l~~~div~vd~~~g~~~~g~-~kP- 73 (231)
T PRK13213 2 LEQLKQQVFEANLALPKYKLVTFTWGNVSGIDREH------GLVVIKPSGVEYDVMSVNDMVVVDLATGKVVEGD-KKP- 73 (231)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCCcceEEEEECCC------CEEEEECCCCCcccCCHHHEEEEEcCCCCCcCCC-CCc-
Confidence 45799999999999999999999999999998653 48999999999999999999999995 9999885 244
Q ss_pred CCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCCC---
Q 012894 106 PHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTA--- 181 (454)
Q Consensus 106 ~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~p--- 181 (454)
|+|+.||+.|||.| |++||||+||+++++|++.+.+ +|.........++| .||+.+|.+
T Consensus 74 -------SsE~~lH~~iY~~rpdv~AViHtHs~~at~~a~~~~~---lp~~~~~~~~~~~g-------~Ip~~~~~~~~~ 136 (231)
T PRK13213 74 -------SSDTDTHLVLYRAFAEIGGIVHTHSRHATIWAQAGKS---LSALGTTHADYFYG-------PIPCTRLMTEAE 136 (231)
T ss_pred -------CccHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHcCCC---CCCcchHHHHHhCC-------Ccceeecccccc
Confidence 99999999999998 9999999999999999999864 33322222222333 388888742
Q ss_pred --Cc--HHHHHHHHHHHhcC----CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCchh
Q 012894 182 --YE--NELTDSLAKAIDAY----PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQL-GLDWSTPNHGPT 252 (454)
Q Consensus 182 --~~--~ela~~ia~~L~~~----p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~-G~~~~~~~~~~~ 252 (454)
++ .++++.+++.+++. ++.+++||+|||+++||+|+++||.+++.+|++|++++.++++ |.+..++++ ++
T Consensus 137 ~~g~~~~~~~~~~a~~~~~~~~~~~~~~avlL~nHG~v~~G~~l~eA~~~~e~lE~~A~i~~~a~~l~g~~~~l~~~-~~ 215 (231)
T PRK13213 137 ITGDYEHETGKVIVETFAEQGLRAADIPAVLVNGHGPFAWGSNAANAVHNAVVLEEIAYMNLFTHQLTPGVGDMQQT-LL 215 (231)
T ss_pred cCCccccchHHHHHHHHHhhcccccCCCEEEECCCCcEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHH-HH
Confidence 43 48888998887541 3568999999999999999999999999999999999999999 776665555 55
Q ss_pred hhhh
Q 012894 253 RNFK 256 (454)
Q Consensus 253 ~~~~ 256 (454)
+++.
T Consensus 216 ~~~~ 219 (231)
T PRK13213 216 DKHY 219 (231)
T ss_pred HHHH
Confidence 5553
No 21
>PRK07044 aldolase II superfamily protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=325.77 Aligned_cols=209 Identities=16% Similarity=0.217 Sum_probs=177.8
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCC
Q 012894 24 GRAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPK 103 (454)
Q Consensus 24 ~~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~ 103 (454)
+.+++++|++|+.+||+++++||+.+++||||+|++++ .+.|||||||.++++|+++||++||++|++++|.+ .
T Consensus 11 ~~~~~~~r~~l~~~~r~l~~~Gl~~g~~GNiSvR~~~~-----~~~~lITpsG~~~~~l~~~div~vd~~g~~veg~~-~ 84 (252)
T PRK07044 11 SPAEWQARVDLAAAYRLVALLGWDDLIYTHISARVPGE-----EHHFLINPYGLLFDEITASNLVKIDLDGNVVDDSP-Y 84 (252)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCcEEEEEccCC-----CCeEEEcCCCCChhhcCHHHeEEECCCCCCcCCCC-C
Confidence 45689999999999999999999999999999999753 24799999999999999999999999999998742 2
Q ss_pred CCCCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC--
Q 012894 104 PYPHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-- 180 (454)
Q Consensus 104 P~~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-- 180 (454)
| ++++|+.||+.|||.| |++||||+||+++++||++... ..|+.+..+ . +.| .||+.+|.
T Consensus 85 ~------~~pse~~lH~~iY~~rpdv~aViHtH~~~a~a~s~~~~~--~~p~~~~~~-~-~~g-------~i~~~~y~~~ 147 (252)
T PRK07044 85 P------VNPAGFTIHSAIHAARPDAHCVMHTHTTAGVAVSAQRDG--LLPLSQHAL-Q-FYG-------RLAYHDYEGI 147 (252)
T ss_pred C------CChHHhHHHHHHHHhCCCCcEEEEECCHHHHHHHHhCCC--CCcchHhHH-H-HcC-------CceeeCCCCC
Confidence 2 1245999999999998 9999999999999999998653 223333332 2 222 38888875
Q ss_pred CCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhhcc
Q 012894 181 AYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKLG 258 (454)
Q Consensus 181 p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~~ 258 (454)
+.+.++++.+++.|++ .++|||+|||+++||+|+++|+.+++.||++|++++.++++|.+..+++++..+..++-
T Consensus 148 ~~~~e~~~~va~~l~~---~~avLL~nHGvi~~G~~l~eA~~~~e~lE~~a~~~~~a~~lG~~~~~~~~~~~~~~~~~ 222 (252)
T PRK07044 148 ALDLDEGERLVADLGD---KPAMLLRNHGLLTVGRTVAEAFLLMYTLERACEIQVAAQAGGGELVLPPPEVAERTARQ 222 (252)
T ss_pred cCCHHHHHHHHHHhcc---CCEEEECCCCceEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence 3478889999999986 79999999999999999999999999999999999999999988777888877777754
No 22
>PRK13145 araD L-ribulose-5-phosphate 4-epimerase; Provisional
Probab=100.00 E-value=2.3e-40 Score=321.56 Aligned_cols=206 Identities=19% Similarity=0.270 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCC
Q 012894 26 AVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPY 105 (454)
Q Consensus 26 ~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~ 105 (454)
..+++|++|+++||+|+++||+.+++||||+|.+++ +.|+|||||.++++|+++||++||+||++++|+ .+|
T Consensus 2 ~~~~~r~~l~~~~r~l~~~gl~~g~~GNiS~r~~~~------~~~~ItPsg~~~~~l~~~div~vd~~G~~~eG~-~kP- 73 (234)
T PRK13145 2 NLQEMRERVCAANKSLPKHGLVKFTWGNVSEVCREL------GRIVIKPSGVDYDELTPENMVVTDLDGNVVEGD-LNP- 73 (234)
T ss_pred cHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEecCC------CEEEEeCCCCCcccCCHHHEEEECCCCCCcCCC-CCc-
Confidence 367899999999999999999999999999998764 589999999999999999999999999999875 234
Q ss_pred CCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC----
Q 012894 106 PHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT---- 180 (454)
Q Consensus 106 ~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~---- 180 (454)
|+|+.||+.|||.| |++||||+||+++++|++++.. +|+........++| .||++++.
T Consensus 74 -------SsE~~lH~~IY~~rpdv~AVvHtH~~~ata~a~~~~~---lp~~~~~~~~~~~g-------~vp~~~~~~~~~ 136 (234)
T PRK13145 74 -------SSDLPTHVELYKAWPEVGGIVHTHSTEAVGWAQAGRD---IPFYGTTHADYFYG-------PIPCARSLTKDE 136 (234)
T ss_pred -------cccHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHcCCC---CCCchhHHHHHhCC-------CcccccccCccc
Confidence 89999999999998 9999999999999999999864 44321111112333 38887753
Q ss_pred ---CCcHHHHHHHHHHHhcCC----CCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhh
Q 012894 181 ---AYENELTDSLAKAIDAYP----KATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTR 253 (454)
Q Consensus 181 ---p~~~ela~~ia~~L~~~p----~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~ 253 (454)
++..++++.+++++++.+ +.+++||+|||+++||+|+++||.+++.+|++|++++.++++|......+++.++
T Consensus 137 ~~~~~~~~~~~~va~~l~~~~~~~~~~~avLL~nHG~v~~G~~l~eA~~~~e~lE~~A~~~~~a~~lg~~~~~~~~~~~~ 216 (234)
T PRK13145 137 VNGAYEKETGSVIIEEFEKRGLDPMAVPGIVVRNHGPFTWGKNPEQAVYHSVVLEEVAKMNRLTEQINPRVEPAPQYIMD 216 (234)
T ss_pred cccccchhhHHHHHHHHhhhccccccCCEEEEcCCCeeEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence 335577888999987521 2589999999999999999999999999999999999999999443444454555
Q ss_pred hhh
Q 012894 254 NFK 256 (454)
Q Consensus 254 ~~~ 256 (454)
++.
T Consensus 217 ~~~ 219 (234)
T PRK13145 217 KHY 219 (234)
T ss_pred HHH
Confidence 543
No 23
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=100.00 E-value=4.1e-40 Score=313.70 Aligned_cols=201 Identities=24% Similarity=0.445 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCC
Q 012894 25 RAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKP 104 (454)
Q Consensus 25 ~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P 104 (454)
|.+++.+++|++++|+|+++||+.+++||||+|++++ .|||||||.++++++++|+++||++|++++|+ .+|
T Consensus 1 ~~~~~~~~~l~~~~r~l~~~Gl~~~~~GNiSvr~~~~-------~~lItpsG~~~~~l~~~di~~vd~~g~~~~~~-~~P 72 (204)
T PRK09220 1 MTLEELLQQLIAAGRWIGARGWVPATSGNMSVRLDEQ-------HCAITVSGKDKGSLTAEDFLQVDIAGNAVPSG-RKP 72 (204)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEcCCC-------EEEEECCCCChhHCChhhEEEEcCCCCCCCCC-CCc
Confidence 3578999999999999999999999999999999763 79999999999999999999999999998764 234
Q ss_pred CCCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCcccc-ccceeeeeCCCC
Q 012894 105 YPHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYD-ELVVPIIENTAY 182 (454)
Q Consensus 105 ~~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~-~~~VPiv~~~p~ 182 (454)
|+|+.+|+.|||+| |++||+|+||++++++|+.... ..+|...+++...++|..... ...||++++.++
T Consensus 73 --------s~E~~lH~~iy~~rpdv~aViH~H~~~~~a~s~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~vp~~~~~~~ 143 (204)
T PRK09220 73 --------SAETLLHTQLYRLFPEIGAVLHTHSVNATVLSRVEKS-DALVLEGYELQKAFAGQTTHETAVVVPIFDNDQD 143 (204)
T ss_pred --------ChhHHHHHHHHHhCCCCcEEEecCcHHHHHHHhhcCC-CeeeecChhHHHHhCCCcccCCeeEEeeecCCCC
Confidence 89999999999998 9999999999999999998653 235656666666665532211 124788775557
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012894 183 ENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGL 242 (454)
Q Consensus 183 ~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~ 242 (454)
++++++.++++|++++..+++||+|||+++||+|+++||.+++.+|+.|++++++++++.
T Consensus 144 ~~eLa~~v~~~l~~~~~~~avlL~nHGvi~~G~~~~eA~~~~e~lE~~~~~~~~~~~~~~ 203 (204)
T PRK09220 144 IARLAARVAPYLDAQPLRYGYLIRGHGLYCWGRDMAEARRHLEGLEFLFECELERRLLEA 203 (204)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCceEEEcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999975445699999999999999999999999999999999999998874
No 24
>PRK06661 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=320.47 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCCC
Q 012894 29 ETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPHK 108 (454)
Q Consensus 29 ~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~~ 108 (454)
++|++|+.++|.|+++||+.+++||||+|++++ +.|||||||.++++|+++||++||+||++++|.+ +|
T Consensus 2 ~~r~~l~~a~r~l~~~Gl~~g~~GNiS~R~~~~------~~~lItPsG~~~~~l~~~div~vd~dG~~~~g~~-~~---- 70 (231)
T PRK06661 2 DIKYNLAAAYRIMAYLSLDDHTYTHLSARPKNA------DFYYIYPFGLRFEEVTTENLLKVSLDGQILEGEE-YQ---- 70 (231)
T ss_pred cHHHHHHHHHHHHHHcCCcccCCceEEEEeCCC------CEEEEeCCCCChhhCcHHHeEEECCCCCCcCCCC-CC----
Confidence 468999999999999999999999999998663 5899999999999999999999999999998753 22
Q ss_pred CCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCc--H
Q 012894 109 PPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYE--N 184 (454)
Q Consensus 109 P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~--~ 184 (454)
.+|+|+.||+.|||.| |++||||+||++++++|+.+... .|+.+..+. +.| .||+.+|. +.. .
T Consensus 71 --~~sse~~lH~~IY~~rpdv~aVvH~H~~~a~a~s~~~~~~--~p~~~~~~~--~~~-------~i~~~~~~~~~~~~~ 137 (231)
T PRK06661 71 --YNKTGYFIHGSIYKTRPDISAIFHYHTPASIAVSALKCGL--LPISQWALH--FYD-------RISYHNYNSLALDAD 137 (231)
T ss_pred --CChhHHHHHHHHHHcCCCCCEEEEECChHHHHHHhcCCCC--CCccHhHHH--HcC-------CceecCCCccccCch
Confidence 1267999999999998 99999999999999999997632 234333322 222 37887764 333 6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCchhhhh
Q 012894 185 ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQL-GLDWSTPNHGPTRNF 255 (454)
Q Consensus 185 ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~-G~~~~~~~~~~~~~~ 255 (454)
+.++.+++++++ .+++||+|||+++||+|+++||.+++.||++|++++.++++ |.++.+++++..+..
T Consensus 138 ~~~~~~a~~l~~---~~avll~nHG~v~~G~sl~eA~~~~~~lE~~a~~~~~a~~~~g~~~~l~~~~~~~~~ 206 (231)
T PRK06661 138 KQSSRLVNDLKQ---NYVMLLRNHGAITCGKTIHEAMFYTYHLEQACKTQCLLNSTKKQELIIPSVEICKKT 206 (231)
T ss_pred hHHHHHHHHhCC---CCEEEECCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 779999999986 79999999999999999999999999999999999999999 888777776554443
No 25
>PRK06208 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-40 Score=325.77 Aligned_cols=206 Identities=16% Similarity=0.206 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCC
Q 012894 26 AVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPY 105 (454)
Q Consensus 26 ~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~ 105 (454)
+.+..+++|+.++|.|+++||+.+++||||+|++++ .+.|||||||.++++|+++||++||+||++++|. +|+
T Consensus 39 ~~~~~~~~l~~~~r~l~~~Gl~~g~~GNIS~R~~~~-----~~~~lITPsG~~~~~lt~eDiv~vd~dG~~v~G~--~ps 111 (274)
T PRK06208 39 ERLHRKQRLAAAFRLFARFGFDEGLAGHITARDPEL-----PDHFWVNPLGVHFSQIKVSDLLLVDHDGEVVEGD--RPL 111 (274)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCceEEEEccCC-----CCeEEEcCCCCChhhCcHHHeEEECCCCCCcCCC--CCC
Confidence 467889999999999999999999999999999763 2589999999999999999999999999999875 341
Q ss_pred CCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCCC---
Q 012894 106 PHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTA--- 181 (454)
Q Consensus 106 ~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~p--- 181 (454)
+++|+.||+.|||.| |++||||+||++++++|+.+.. ++..+.+.. .+.| .||++++..
T Consensus 112 ------~~sE~~lH~~IYr~rpDv~AViHtHpp~ata~s~~~~~---l~~i~~~~~-~~~~-------~ip~~~~~~g~~ 174 (274)
T PRK06208 112 ------NRAAFAIHSAIHEARPDVVAAAHTHSTYGKAWSTLGRP---LDPITQDAC-AFYE-------DHALFDDFTGVV 174 (274)
T ss_pred ------CHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHhCCC---CChhhHHHH-HHcC-------CceeccCCCCcc
Confidence 246899999999998 9999999999999999998753 433333332 2322 378876532
Q ss_pred CcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhhhhccc
Q 012894 182 YENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKLGL 259 (454)
Q Consensus 182 ~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~~~ 259 (454)
+++++++.++++|++ .++|||+|||+++||+|+++||.+++.||++|++++.++.+|.+.. ++++++++.++.+
T Consensus 175 ~s~ela~~va~~l~~---~~avLL~NHGvv~~G~tl~eA~~~~e~lE~aA~i~l~a~~~G~~~~-L~~e~~~~~~~~~ 248 (274)
T PRK06208 175 VDTSEGRRIAAALGT---HKAVILQNHGLLTVGPSVDAAAWWFIALERACQTQLLAEAAGPPQP-IDHETARHTRSQV 248 (274)
T ss_pred CchHHHHHHHHHhcc---CCEEEECCCCceEeeCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcC-CCHHHHHHHHHHh
Confidence 378999999999986 6999999999999999999999999999999999999999997765 5667888877544
No 26
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=100.00 E-value=9.4e-40 Score=308.63 Aligned_cols=190 Identities=37% Similarity=0.720 Sum_probs=165.2
Q ss_pred HHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCCCCCCCC
Q 012894 34 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPHKPPKCS 113 (454)
Q Consensus 34 La~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~~P~~~S 113 (454)
|++++|+|+++||+.+++||||+|++++ .|||||||.++++++++||++||++|++++|+ .+| |
T Consensus 1 i~~~~r~l~~~Gl~~~~~GniS~r~~~~-------~~lItpsg~~~~~l~~~di~~v~~~g~~~~g~-~~p--------s 64 (193)
T TIGR03328 1 LIEAGRDLYKRGWVPGTGGNLSARLDED-------EILITPSGVDKGRLTPEDFLVVDLQGKPVSGG-LKP--------S 64 (193)
T ss_pred CHHHHHHHHHcCCCccCCCEEEEEcCCC-------EEEEeCCCCChhhCCcceEEEEcCCCCCCCCC-CCC--------C
Confidence 4789999999999999999999999764 79999999999999999999999999999874 233 8
Q ss_pred ccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCc-cccccceeeeeCCCCcHHHHHHHH
Q 012894 114 DCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHG-YYDELVVPIIENTAYENELTDSLA 191 (454)
Q Consensus 114 ~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~-~~~~~~VPiv~~~p~~~ela~~ia 191 (454)
+|+.+|+.|||.| |++||||+||++++++|+.......+|+..+++++.++|.. |.+...||++++.|++.++++.++
T Consensus 65 ~e~~~H~~iy~~~pdv~aVvH~H~~~a~a~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vp~~~~~~gs~ela~~~~ 144 (193)
T TIGR03328 65 AETLLHTQLYRLTPGAGAVLHTHSVEATVLSRLYPSNGAFELEGYEMLKALPGITTHEDKLTIPIFENTQDIARLADSVA 144 (193)
T ss_pred cHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHhhcccCCeeeccchhhhhhhCCCcCCCCceEEeeecCCCChHHHHHHHH
Confidence 9999999999998 99999999999999999886532346777777776554421 222235999998889999999999
Q ss_pred HHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHh
Q 012894 192 KAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQ 239 (454)
Q Consensus 192 ~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~ 239 (454)
++++++++.++|||+|||+++||+|+++|+.++|.+|++|++.+.++.
T Consensus 145 ~~l~~~~~~~avll~nHGv~~~G~~~~~A~~~~e~lE~~a~~~~~~~~ 192 (193)
T TIGR03328 145 PYLEAYPDVPGVLIRGHGLYAWGRDWEEAKRHLEALEFLFECELEMLK 192 (193)
T ss_pred HHHhcCCCCCEEEEcCCcceEEcCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999866678999999999999999999999999999999999998875
No 27
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=100.00 E-value=1.6e-39 Score=304.67 Aligned_cols=179 Identities=25% Similarity=0.326 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCC
Q 012894 28 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPH 107 (454)
Q Consensus 28 ~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~ 107 (454)
.++|++|++++|+++++||+.+++||||+|+++ .|||||||.++++++++|+++||++|++++|. +|
T Consensus 2 ~~~~~~l~~~~~~~~~~gl~~~~~GNiS~R~~~--------~~lItpsG~~~~~l~~~di~~vd~~g~~~~g~--~P--- 68 (184)
T PRK08333 2 RNVKAQLVKYSKLAHERGLTAAFGGNLSIRVGN--------LVFIKATGSVMDELTREQVAVIDLNGNQLSSV--RP--- 68 (184)
T ss_pred hHHHHHHHHHHHHHHHCCCCcCCCCeEEEEeCC--------EEEEeCCCCCcccCCHHHEEEECCCCCCCCCC--CC---
Confidence 468999999999999999999999999999975 69999999999999999999999999998763 34
Q ss_pred CCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHH-hhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCcH
Q 012894 108 KPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVT-MINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYEN 184 (454)
Q Consensus 108 ~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala-~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~ 184 (454)
|+|+.+|..|||.| |++||+|+||++++++| +.+. .+|....+... +.| .||+++|. |+++
T Consensus 69 -----s~e~~lH~~iyr~rpdv~aViHtH~~~a~a~s~~~~~---~~p~~~~~~~~-~~~-------~v~v~~~~~~g~~ 132 (184)
T PRK08333 69 -----SSEYRLHLAVYRNRPDVRAIAHLHPPYSIVASTLLEE---ELPIITPEAEL-YLK-------KIPILPFRPAGSV 132 (184)
T ss_pred -----ChhHHHHHHHHHhCCCCCEEEeCCcHHHHHHHHHcCC---CCCCccHHHHH-hCC-------CEeeecCCCCCcH
Confidence 89999999999998 99999999999999999 6554 34443333322 212 49999986 7899
Q ss_pred HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 012894 185 ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLH 238 (454)
Q Consensus 185 ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~ 238 (454)
++++.++++|++ .+++||+|||+++||+|+++|+.+++.+|++|++++.+.
T Consensus 133 ~la~~~~~~l~~---~~~vll~nHGv~~~G~~~~eA~~~~e~lE~~A~~~~~~~ 183 (184)
T PRK08333 133 ELAEQVAEAMKE---YDAVIMERHGIVTVGRSLREAFYKAELVEESAKLWYLKF 183 (184)
T ss_pred HHHHHHHHHhcc---CCEEEEcCCCCEEEcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999986 799999999999999999999999999999999998875
No 28
>PRK06357 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=311.19 Aligned_cols=193 Identities=18% Similarity=0.266 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCC---CCCCCCCCEEEEe-CCCCcccCCCC
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQ---KERMEPEDMYVLS-GNGTTLSSPSP 102 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~---~~~l~~eDlv~Vd-ldG~~v~g~~~ 102 (454)
.+++|++|++++|+++++||+.+++||||+|+++. .+.+.|||||||++ +++|+|+||++|| .+|++++|+ .
T Consensus 3 ~~~~r~~l~~~~r~l~~~Gl~~gt~GNiS~R~~~~---~~~~~~~ITpsg~~g~~~~~lt~~Div~vd~~~g~~~~g~-~ 78 (216)
T PRK06357 3 FQKEREDLAKVVKTMFDRKETNAAGGNISVRMTAE---KNKEYIIMTPTLMSEAKLCDLSPYQILVVDLNTGEVIEGV-G 78 (216)
T ss_pred hHHHHHHHHHHHHHHHHcCCCccCCCEEEEEeccc---CCCCeEEEeCCCCCccccccCCHHHEEEEecCCCeEcCCC-C
Confidence 46789999999999999999999999999999420 00248999999875 9999999999999 589999875 2
Q ss_pred CCCCCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-
Q 012894 103 KPYPHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT- 180 (454)
Q Consensus 103 ~P~~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~- 180 (454)
+| |+|+.+|+.|||.| |++||||+||++++++++.+.. +|... ++...+ | .||+++|.
T Consensus 79 kP--------SsE~~lH~~IY~~rpdv~aVvH~H~~~ata~a~~~~~---lp~~~-~~~~~~-g-------~i~~~p~~~ 138 (216)
T PRK06357 79 RV--------TREINMHEAAYVANPKIKCVYHSHAKESMFWATLGLE---MPNLT-EATQKL-G-------KIPTLPFAP 138 (216)
T ss_pred CC--------ChhHHHHHHHHHhCCCCCEEEecCcHHHHHHHHcCCC---CCCcc-HHHHhc-C-------CcceecccC
Confidence 34 99999999999998 9999999999999999988753 44322 222222 2 38888875
Q ss_pred CCcHHHHHHHHHHHhcCCC---CeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012894 181 AYENELTDSLAKAIDAYPK---ATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 243 (454)
Q Consensus 181 p~~~ela~~ia~~L~~~p~---~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~ 243 (454)
++++++++.+++++++.++ .+++||+|||+++||+|+.+||.+++.+|++|++++.+++++..
T Consensus 139 ~gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGvv~~G~~l~eA~~~~e~lE~~a~i~~~a~~l~~~ 204 (216)
T PRK06357 139 ATSPELAEIVRKHLIELGDKAVPSAFLLNSHGIVITDTSLHKAYDILETIEWNAYIAYQATVFDKL 204 (216)
T ss_pred CCcHHHHHHHHHHHhhcCcccCCCEEEECCCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999999975322 37999999999999999999999999999999999999998854
No 29
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=100.00 E-value=2.9e-39 Score=302.26 Aligned_cols=180 Identities=17% Similarity=0.288 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCCCCCCCC
Q 012894 30 TRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPKPYPHKP 109 (454)
Q Consensus 30 ~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~~P 109 (454)
.|++|++++|.|+++||+.+++||||+|+++ .|||||||.++++++++|+++||++|+.. +. .+
T Consensus 1 ~~~~l~~~~~~l~~~gl~~~~~GniS~R~~~--------~~lItpsg~~~~~l~~~dlv~vd~~g~~~-~~-~~------ 64 (181)
T PRK08660 1 MWQEFARIGKKLFAHGLVSSHFGNISVRTGD--------GLLITRTGSMLDEITEGDVIEVGIDDDGS-VD-PL------ 64 (181)
T ss_pred CHHHHHHHHHHHHHCCCcccCCceeEEEcCC--------EEEEeCCCCCcccCChhHEEEEcCCCCcc-CC-CC------
Confidence 3789999999999999999999999999844 79999999999999999999999999864 32 23
Q ss_pred CCCCccHHHHHHHHhhCCccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCCCCcHHHHHH
Q 012894 110 PKCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDS 189 (454)
Q Consensus 110 ~~~S~E~~lH~~IYr~rdv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~p~~~ela~~ 189 (454)
||+|+.+|+.|||++|++||+|+||+++++||+.+.. +++...+... +.| .||++...|+++++++.
T Consensus 65 --ps~E~~lH~~iy~~~dv~aVvH~H~~~~~a~s~~~~~---l~~~~~~~~~-~~~-------~ipv~~~~~~~~~la~~ 131 (181)
T PRK08660 65 --ASSETPVHRAIYRRTSAKAIVHAHPPYAVALSLLEDE---IVPLDSEGLY-FLG-------TIPVVGGDIGSGELAEN 131 (181)
T ss_pred --CCccHHHHHHHHcCCCCCEEEEeCChHHHHHHHcCCC---CCCcCHHHHH-hcC-------CEeEEeCCCCCHHHHHH
Confidence 3999999999999669999999999999999998753 4433344332 222 38998334889999999
Q ss_pred HHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012894 190 LAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLG 241 (454)
Q Consensus 190 ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G 241 (454)
++++|++ .+++||+|||+++||+|+++|+.+++.+|++|++++.+++++
T Consensus 132 v~~~l~~---~~~vll~nHG~~~~G~~i~~A~~~~e~lE~~a~i~~~~~~l~ 180 (181)
T PRK08660 132 VARALSE---HKGVVVRGHGTFAIGKTLEEAYIYTSQLEHSCKVLYLVRTAK 180 (181)
T ss_pred HHHHHhh---CCEEEEcCCCceEeCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999986 799999999999999999999999999999999999999875
No 30
>COG0235 AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-39 Score=310.54 Aligned_cols=200 Identities=29% Similarity=0.450 Sum_probs=173.5
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCCC
Q 012894 24 GRAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSPK 103 (454)
Q Consensus 24 ~~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~~ 103 (454)
++..++.|++|++++|.|+++||+.+++||||+|+++. ..|+|||||..|++|+++|+++||+||++++|+ .+
T Consensus 2 ~~~~~~~~~~l~~~~~~l~~~g~~~~t~GniS~r~~~~------~~~~ItpsG~~~~~lt~~dlv~vd~~G~~~~g~-~~ 74 (219)
T COG0235 2 SMMLEKLRQELAKAARLLARRGLVEGTAGNISVRLPEG------GLFLITPSGVPFGELTADDLVVVDLDGEVVEGG-KK 74 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCcCCceEEEEcCCC------ceEEEeCCCCccccCcHHHeEEEeCCCcEecCC-CC
Confidence 35678999999999999999999999999999999884 359999999999999999999999999999883 23
Q ss_pred CCCCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccceeeeeCC-C
Q 012894 104 PYPHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-A 181 (454)
Q Consensus 104 P~~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p 181 (454)
| |+|+++|+.|||.| |++||+|+||++++++|+.++ .+|+.+++....+++ .||+.+|. +
T Consensus 75 p--------Sse~~~H~~iY~~rpd~~aVvHtHs~~a~als~~~~---~l~~~~~~~~~~~~~-------~i~~~~~~~~ 136 (219)
T COG0235 75 P--------SSETPIHLAIYRARPDAGAVVHTHSPYATALSTLGE---PLPPLGTEHLKYFGG-------GIPCAPYAGP 136 (219)
T ss_pred C--------chhHHHHHHHHHhCCCCCEEEecCcHHHHHHHHhcC---CCCCCCHHHHHHcCC-------CcccccCCCC
Confidence 4 99999999999998 999999999999999999985 456556677665544 49999885 6
Q ss_pred CcHHHHHHHHHHHhcCCCCeEE--EEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 012894 182 YENELTDSLAKAIDAYPKATAV--LVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHGP 251 (454)
Q Consensus 182 ~~~ela~~ia~~L~~~p~~~aV--LL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~~ 251 (454)
++.+++++++..... ...+ ||+|||+++||+|+++|+.+++.||++|+++++++++|.+....++.+
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~ll~~HG~~~~G~~l~eA~~~~~~lE~~a~~~~~~~~~~~~~~~~~~~~ 205 (219)
T COG0235 137 GSVELAEALAEAADL---AEAVLKLLRNHGVVAWGKTLAEAVHLAEVLEELAKLQLKALSLGKPLLTAPDEE 205 (219)
T ss_pred CchhhHHHHHHHHHH---HHHHHHHHHcCCcEEECCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCHHH
Confidence 677888888777664 3444 499999999999999999999999999999999999999876444433
No 31
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=100.00 E-value=1.1e-38 Score=315.53 Aligned_cols=215 Identities=17% Similarity=0.203 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCC-------------------C-CCccEEEEeCCCCCCCCCCC--
Q 012894 27 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSI-------------------P-KPQQLILMSPSGVQKERMEP-- 84 (454)
Q Consensus 27 ~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~-------------------~-~~~~~flItpSG~~~~~l~~-- 84 (454)
..+++++|++++|+|+++||+.+++||||+|++++++ | ..+++|+|||||.+++++++
T Consensus 6 ~~~~~~~i~~~~~~l~~~Gl~~~~~GNiS~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lITpSG~~~~~l~~~~ 85 (270)
T TIGR02624 6 DSPFVQEMIKTTSDLWRLGWDERNGGNISLRLDEEEVAPYLDFHQVPRKIPLKFPAPELANKYFLVTGSGKFFRNVEENP 85 (270)
T ss_pred cHHHHHHHHHHHHHHHHcCCcCCCCCEEEEEcCccccchhhcccccccccccccccccccCCEEEEeCCCCCHHhcccCc
Confidence 3569999999999999999999999999999976200 0 01358999999999999994
Q ss_pred -CCE--EEEeCCCCcccC-----CCCCCCCCCCCCCCccHHHHHH----HHhhC-CccEEEecCChHHHHHHhhcCCC-c
Q 012894 85 -EDM--YVLSGNGTTLSS-----PSPKPYPHKPPKCSDCAPLFMK----AYEKR-DAGAVIHSHGIESCLVTMINPMS-K 150 (454)
Q Consensus 85 -eDl--v~VdldG~~v~g-----~~~~P~~~~P~~~S~E~~lH~~----IYr~r-dv~aVvHtHp~~~~ala~~~~~~-~ 150 (454)
+|+ ++||++|+.++. ++.+ ||+|+.||+. |||.| |++||||+||++++++|+..... .
T Consensus 86 ~~d~~iv~vd~~G~~~~~~~~~~~g~k--------PSsE~~mH~~v~~~iy~~rpd~~AVvHtHp~~ata~s~~~~~~~~ 157 (270)
T TIGR02624 86 AENLGILRVSEDGASVHLLWGLTDGGV--------PTSELPAHFMSHIARLKVDPENRVIMHCHATNLIAMTFTHELDEA 157 (270)
T ss_pred hhceeEEEECCCCCEEEeeccccCCCC--------cChHHHHHHHHHHHHHHhCCCCCEEEccCcHHHHHHHccCcccch
Confidence 685 568999999862 1123 4999999996 68888 99999999999999999986421 1
Q ss_pred c----cccchHHHHhhhhCCccccccceeeeeCC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHH
Q 012894 151 E----FRITHMEMIKGIKGHGYYDELVVPIIENT-AYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAE 225 (454)
Q Consensus 151 ~----lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e 225 (454)
. ++....++...+++ .||+++|. |++.+|++.+++++++ .++|||+|||+++||+|+++||.+++
T Consensus 158 ~~~~~l~~~~~e~~~~~~~-------~i~vvp~~~pGs~eLA~~v~~~l~~---~~avLL~nHGvva~G~~l~eA~~~~E 227 (270)
T TIGR02624 158 VFTRTLWQMCTECLVVFPD-------GVGIIPWMVPGTNEIGEATAEKMKE---HRLVLWPHHGIFGAGPSLDETFGLIE 227 (270)
T ss_pred hccccccccccchhheeCC-------ccccccCcCCCCHHHHHHHHHHhcc---CCEEEEcCCCCeEecCCHHHHHHHHH
Confidence 1 11111222222222 48999986 8999999999999986 68999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhhhhhccc
Q 012894 226 CYHYLFDAAIKLHQLGLDWSTPNHGPTRNFKLGL 259 (454)
Q Consensus 226 ~LE~~A~i~l~A~~~G~~~~~~~~~~~~~~~~~~ 259 (454)
.+|++|++++.++++|.+....++++++++++.+
T Consensus 228 ~lE~~A~i~~~a~~lg~~~~~L~~e~l~~~~~~~ 261 (270)
T TIGR02624 228 TAEKSAEVYTKVYSQGGVKQTISDEQLIALAKRF 261 (270)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHh
Confidence 9999999999999999775557778888886544
No 32
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=100.00 E-value=6.8e-40 Score=315.56 Aligned_cols=123 Identities=40% Similarity=0.658 Sum_probs=109.2
Q ss_pred CeEEEEeeecccccccccccccchhhhhhhhhHHhhccCChhhHHHHHHHHHHhHHhhhcccCCcccCCCCCCChHHHHH
Q 012894 284 PRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRSQVEDDLKQGVAGAVPIPPGDAGKEEVIA 363 (454)
Q Consensus 284 ~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (454)
+++|||||||||||||||||||||||+++|++||++||+++ +++++++.. .... . +
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~----~~~~~~~~~--------------~~~~--~----~ 56 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYEST----IVENLRELG--------------KTPE--E----L 56 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCH----HHHHHHHhc--------------cCCc--H----H
Confidence 58999999999999999999999999999999999999987 555655421 0001 1 5
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 364 ALVANVDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 364 ~~~~~v~~~~~~D~K~t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
.++++|+.||++|||+|+||+|||+||++||++|++++++||||.++|++|+++|+++|||||+|..
T Consensus 57 ~~~~~~~~~~~~d~k~~~lk~lqg~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~ 123 (220)
T TIGR01691 57 ILLRKLHAEMDKDRKATPLKTLQGLIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVP 123 (220)
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 6778888899999999999999999999999999999999999999999999999999999999854
No 33
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=100.00 E-value=1.3e-38 Score=315.81 Aligned_cols=217 Identities=15% Similarity=0.169 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCC---------------------CCCccEEEEeCCCCCCCCC--CC
Q 012894 28 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSI---------------------PKPQQLILMSPSGVQKERM--EP 84 (454)
Q Consensus 28 ~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~---------------------~~~~~~flItpSG~~~~~l--~~ 84 (454)
...+++|++++|+++++||+.+++||||+|++++++ +..++.|||||||.+++++ +|
T Consensus 7 ~~~~~~l~~~~~~l~~~Gl~~~~~GNiSvR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lITpSG~~~~~l~~~p 86 (274)
T PRK03634 7 SWFVQGMIKVTSDLWLKGWDERNGGNISLRLTEEEVAPYGDDFHQQPRYIPLSQPMPELAGTYFLVTGSGKFFRNVQLDP 86 (274)
T ss_pred HHHHHHHHHHHHHHHHcCCccCCCCeEEEEcCchhhhhhhhccccccccccccccchhccCCEEEEeCCCcChhhhhcCc
Confidence 569999999999999999999999999999976210 0113589999999999999 55
Q ss_pred C-C--EEEEeCCCCccc---CCCCCCCCCCCCCCCccHHHHHHHH----hh-C-CccEEEecCChHHHHHHhhcCCCc--
Q 012894 85 E-D--MYVLSGNGTTLS---SPSPKPYPHKPPKCSDCAPLFMKAY----EK-R-DAGAVIHSHGIESCLVTMINPMSK-- 150 (454)
Q Consensus 85 e-D--lv~VdldG~~v~---g~~~~P~~~~P~~~S~E~~lH~~IY----r~-r-dv~aVvHtHp~~~~ala~~~~~~~-- 150 (454)
+ | +++||++|+.++ |. +. ..|||+|+.||+.|| |. | |++||+|+||++++++|+.+. .+
T Consensus 87 ~dd~~lv~vd~~G~~~~~~~g~---~~---~~kPSsE~~lH~~IY~~~~~~~rpdv~AVvHtHs~~atals~~~~-l~~~ 159 (274)
T PRK03634 87 AANLGVIRIDSDGAGYHILWGL---TN---GGKPTSELPAHLMSHIARLKATNGKDRVIMHCHATNLIALTYVLE-LDEA 159 (274)
T ss_pred hhcCCEEEEcCCCCEeeeeccC---CC---CCCCchHHHHHHHHHHHHhhccCCCCcEEEecCchHHHHHHCcCC-cChH
Confidence 5 5 678999998653 31 00 124499999999999 45 7 999999999999999999864 11
Q ss_pred ccccchHHHHhhhhCCccccccceeeeeCC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHH
Q 012894 151 EFRITHMEMIKGIKGHGYYDELVVPIIENT-AYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHY 229 (454)
Q Consensus 151 ~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~ 229 (454)
.+....+++... ...++. ..||+++|. |++.++++.+++++++ .++|||+|||+++||+|+++||.+++.+|+
T Consensus 160 ~~~~~~~~~~~e--~~~~~~-~~i~vvpy~~pgs~eLa~~v~~~l~~---~~avLL~nHGvv~~G~~l~eA~~~~e~lE~ 233 (274)
T PRK03634 160 VFTRTLWEMSTE--CLVVFP-DGVGIVPWMVPGTDEIGQATAEKMQK---HDLVLWPKHGVFGSGPTLDEAFGLIDTAEK 233 (274)
T ss_pred hhhhhhhhcCcc--ceeEeC-CceeEecCCCCCCHHHHHHHHHHhcc---CCEEEEcCCCCeEecCCHHHHHHHHHHHHH
Confidence 111111111110 000111 148999985 8999999999999986 689999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhhhhhc
Q 012894 230 LFDAAIKLHQLGLDWSTPNHGPTRNFKL 257 (454)
Q Consensus 230 ~A~i~l~A~~~G~~~~~~~~~~~~~~~~ 257 (454)
+|++++.++++|......+++++++++.
T Consensus 234 ~a~i~l~a~~~G~~~~~l~~e~l~~l~~ 261 (274)
T PRK03634 234 SAEIYVKVLSMGGMKQTITDEELIALGE 261 (274)
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 9999999999996445566778888864
No 34
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=100.00 E-value=4.7e-38 Score=293.63 Aligned_cols=180 Identities=33% Similarity=0.519 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCC-CCcccCCCCCCCCCCCC
Q 012894 32 VLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGN-GTTLSSPSPKPYPHKPP 110 (454)
Q Consensus 32 ~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~Vdld-G~~v~g~~~~P~~~~P~ 110 (454)
++|+.++|+++++||+.+++||||+|++++ .|||||||.++++++++|+++||+| |++++|.. .+.
T Consensus 1 ~~l~~~~r~l~~~g~~~~~~GniS~R~~~~-------~~lit~sg~~~~~l~~~d~~~v~~~~g~~l~g~~------~~~ 67 (184)
T PF00596_consen 1 QELAEACRRLYERGLVDGTGGNISVRVPGD-------RFLITPSGVDKDELTPEDIVVVDLDDGNILEGDE------GGG 67 (184)
T ss_dssp HHHHHHHHHHHHTTSSCTTBEEEEEEECTT-------EEEEEBTTS-GGGCTGGGEEEEETTTSEEEEEST------TSS
T ss_pred CHHHHHHHHHHHCCCcccCCCeEEEEecCC-------CEEEcCCCCChhhCChhhceEEeccccceeeccC------CCC
Confidence 689999999999999999999999999864 8999999999999999999999999 99996510 012
Q ss_pred CCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhh-cCCCcccccchHHHHhhhhCCccccccceeeeeCC-CCcHHHH
Q 012894 111 KCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMI-NPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENT-AYENELT 187 (454)
Q Consensus 111 ~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~-~~~~~~lp~~~~e~~~~~~G~~~~~~~~VPiv~~~-p~~~ela 187 (454)
+||+|+.+|+.|||.| |++||+|+||+++++++++ ++. ++...++....+.+ ..||+++|. |++++++
T Consensus 68 ~ps~e~~lH~~iy~~rpdv~aViH~H~~~~~a~s~~~~~~---l~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~ 138 (184)
T PF00596_consen 68 KPSSETPLHAAIYRARPDVNAVIHTHPPYATALSCLAGEP---LPPITQEAARFYFG------GEVPVVPYAPPGSEELA 138 (184)
T ss_dssp CBCTTHHHHHHHHHHCTTSSEEEEE--HHHHHHHTSSTCC---CCSSSHHHHHTHTS------SCEEEE-THSTTCHHHH
T ss_pred CCCHhHHHHhHHHcCCCCCCEEEecChHHHHhHHhhhhcc---cccchhhHHhhhcC------ccceeeccccccchhhh
Confidence 4599999999999999 9999999999999999988 653 44344454432211 149999986 6889999
Q ss_pred HHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHH
Q 012894 188 DSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAI 235 (454)
Q Consensus 188 ~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l 235 (454)
+.++++|+. +.+++||+|||+++||+|+++|+.+++.||++|++|+
T Consensus 139 ~~i~~~l~~--~~~~vll~nHG~~~~G~s~~~A~~~~~~lE~~a~~~l 184 (184)
T PF00596_consen 139 EAIAEALGE--DRKAVLLRNHGVVVWGKSLEEAFYRAEYLERAAEIQL 184 (184)
T ss_dssp HHHHHHHTC--TSSEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcC--CceEEeecCCceEEEeCCHHHHHHHHHHHHHHHHHhC
Confidence 999999982 4899999999999999999999999999999999986
No 35
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-32 Score=252.28 Aligned_cols=210 Identities=58% Similarity=1.001 Sum_probs=191.3
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCC
Q 012894 21 YLEGRAVKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSP 100 (454)
Q Consensus 21 ~~~~~~~~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~ 100 (454)
++.+++.+..++-+.++||.+|..||+.|+||-||+|.++ .++|.|||+.+++|+|+|+.++|++++.+..+
T Consensus 11 ~i~~~~~~~p~~Li~eLc~qFY~lgWvtGTGgai~ik~~~--------ei~iaPSgVQKErm~peDlfv~~~~~~~~~~P 82 (238)
T KOG2631|consen 11 RIGSMDLEHPRNLICELCRQFYHLGWVTGTGGAISIKHGD--------EIYIAPSGVQKERMQPEDLFVMDLNTEYISVP 82 (238)
T ss_pred cccCCCccchHHHHHHHHHHHHhcCceeccCCeEEEeeCC--------eeEeCcchhhhhhCCccceEEEecCCceeccC
Confidence 5677888899999999999999999999999999999988 48899999999999999999999999877654
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHhhCCccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhC--Cc----cccccce
Q 012894 101 SPKPYPHKPPKCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKG--HG----YYDELVV 174 (454)
Q Consensus 101 ~~~P~~~~P~~~S~E~~lH~~IYr~rdv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G--~~----~~~~~~V 174 (454)
+..+++++|.++++..++|..|++.||||||+..++..+.... ...|.+++.||++++.+ .+ |++.+.|
T Consensus 83 ----~~~k~~k~s~CtpLF~~~y~~r~AgAvIHTHS~~Avl~t~L~~-~~~F~ith~EmIKgI~~~~~g~~~~y~D~L~v 157 (238)
T KOG2631|consen 83 ----KPSKKLKPSQCTPLFMAAYTMRDAGAVIHTHSQAAVLATLLFP-SDEFRITHQEMIKGIPKGNSGGYLPYFDTLVV 157 (238)
T ss_pred ----CCcCCCCccccHHHHHHHHHhcCCceEEEeccHHHHHHHhhcc-cceeEeehHHHHhcCCCCCCCccccccceEEE
Confidence 2235678899999999999999999999999999999999876 35789999999987544 22 6666789
Q ss_pred eeeeCCCCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 012894 175 PIIENTAYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLD 243 (454)
Q Consensus 175 Piv~~~p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~ 243 (454)
|+++|.|.+.+|.+.+..++..||+.-+||+||||+++||+|++.|.-.+|+.|++.++.++.+.+|-|
T Consensus 158 PIIeNt~~E~~L~D~l~~aie~YP~tcAVLVR~HGvyvWG~TWekaKt~~EcydYLfelaikm~klgip 226 (238)
T KOG2631|consen 158 PIIENTPSESDLKDSLKKAIELYPDTCAVLVRRHGVYVWGPTWEKAKTMTECYDYLFELAIKMKKLGIP 226 (238)
T ss_pred eeecCCchHHHHHHHHHHHHHhCCcceEEEEecCcEEEecCcHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988
No 36
>PRK08324 short chain dehydrogenase; Validated
Probab=99.95 E-value=1.9e-28 Score=270.69 Aligned_cols=261 Identities=18% Similarity=0.143 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCceEEEEeCCCCCC-CCccEEEEeCCCCCCCCCCCCCEEEEeCCCC-----------
Q 012894 28 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIP-KPQQLILMSPSGVQKERMEPEDMYVLSGNGT----------- 95 (454)
Q Consensus 28 ~~~r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~~~~-~~~~~flItpSG~~~~~l~~eDlv~VdldG~----------- 95 (454)
+++++.+....+...+.|++.+++||+|+|+.+..+. .+.+.|||||||.+++.|+++|++.||+++-
T Consensus 14 ~~~~~~v~~~~~l~~~~~l~~~~gGN~S~k~~~~~~~g~~~~~~~it~SG~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 93 (681)
T PRK08324 14 DELALLVYRSRLLGADPRLVNHGGGNTSVKTTETDLTGEPVEVLWVKGSGGDLATITAAGFAALRLDPLRALKELGVLSD 93 (681)
T ss_pred cHHHHHHHHHHHhCCCHHHhccCCceeeeeeeccccCCCeeeEEEEECCccChhhccccCCCeeeHHHHHhhhccCCcch
Confidence 4566666666666666779999999999998542111 1234799999999999999999999998741
Q ss_pred --c---ccCCCCCCCCCCCCCCCccHHHHHHHHhhCCccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCcccc
Q 012894 96 --T---LSSPSPKPYPHKPPKCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYD 170 (454)
Q Consensus 96 --~---v~g~~~~P~~~~P~~~S~E~~lH~~IYr~rdv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~ 170 (454)
. +.+....+ .+.+||+|+.||+.||+ ++|+||||++++++|++... .++.. +. +++
T Consensus 94 ~~~~~~~~~~~~~~---~~~~pS~e~~lH~~i~~----~~V~HtH~~~~~a~s~~~~~---~~~~~-~~---~~~----- 154 (681)
T PRK08324 94 DEMVAYLRHCLFDP---NAPAPSIETLLHAFLPF----KHVDHTHPDAIIAIANAPDG---EELTR-EI---FGD----- 154 (681)
T ss_pred HHHHHHHHhhccCC---CCCCCchhHHHHhhcCC----CEEEecCchHHHHHHcCCCH---HHHHH-HH---cCC-----
Confidence 0 00000011 12356999999999994 56999999999999998642 22211 11 222
Q ss_pred ccceeeeeCC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhc--CCCC-CC
Q 012894 171 ELVVPIIENT-AYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQL--GLDW-ST 246 (454)
Q Consensus 171 ~~~VPiv~~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~--G~~~-~~ 246 (454)
.||+++|. |+ .+|++.+.+.++++++.+++||+|||+++||+|++|||.+++.+|++|++++.+++. |++. ..
T Consensus 155 --~v~~~py~~pg-~~l~~~~~~~~~~~~~~~~~lL~nHG~~~~G~~~~eA~~~~~~~e~~a~~~~~a~~~~~g~~~~~~ 231 (681)
T PRK08324 155 --RVGWVPYVRPG-FDLALAIAEAVRANPGAEGVVLGKHGLFTWGDTAKEAYERTIEIITRAEEYIEARGAGFGGAVYEA 231 (681)
T ss_pred --ceEEcCccCCC-hHHHHHHHHHHHhCCCCcEEEECCCCCeeccCCHHHHHHHHHHHHHHHHHHHHHhccccCCccccC
Confidence 48999986 65 789999999998877789999999999999999999999999999999999999988 5543 33
Q ss_pred CCCchhhhhhcccCCCCCCcc-ccccccCCCCCCCCCCCeEEEE-----ee--ecccccccccccccchhhhhh
Q 012894 247 PNHGPTRNFKLGLGSNGNVNT-SAKAVTEGSDYGSGLFPRCIVL-----DI--EGTTTPISFVSEVLFPYARDN 312 (454)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ill-----DI--EGTt~~isFV~d~LFPYa~~~ 312 (454)
.++++.+...+.+. .--|+. |.. ...-+.|++++.+-.++- |+ =||.||=.|||-.-.|+..+.
T Consensus 232 l~~~~~~~~~~~~~-~~~r~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~~~pdh~~rtk~~p~~~~~ 303 (681)
T PRK08324 232 LPAPERRAIAAALA-PVLRGAVSTE-ERGILHFRDSDAVLEFVNSADLPRLAQLGTSTPDHFIRTKIRPLVLDA 303 (681)
T ss_pred CCchhHHHHHHHHH-HHHHHHhhcc-cCceeEecCCHHHHHHhcCcchHHHHhcCCCCCceeeeecccceeecC
Confidence 44444443321110 000111 111 123355666554433321 11 389999999999999988655
No 37
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=99.95 E-value=3.7e-27 Score=260.26 Aligned_cols=253 Identities=17% Similarity=0.097 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHcCCccccCceEEEEeCCC-CCCC-CccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccC---------
Q 012894 31 RVLISELCRHFYTLGWVSGTGGSITIKVHDD-SIPK-PQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSS--------- 99 (454)
Q Consensus 31 r~eLa~a~R~L~~~Gl~~~~~GNISvRv~~~-~~~~-~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g--------- 99 (454)
++++...+++.++.|++.+++||+|+|+.++ |+.. +.+.|||||||.++++|+++|++.||+++.....
T Consensus 2 ~~~v~~s~~~g~~~~l~~~~gGN~Svk~~~~~~~~g~~~~~~~I~~SG~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~ 81 (676)
T TIGR02632 2 AELVYRSNLLGADRRITNYGGGNTSAKTTETDPLTGGEVEVMWVKGSGGDLGTMTAANFAGLRLDKLRPLKERYPGVETE 81 (676)
T ss_pred HHHHHHHHHhCCCHHHhccCCccceeeccccCCCcCceeeEEEEECCccCHhhccccCCceEechHHHHHhhhccccCCH
Confidence 5677888888899999999999999998652 1111 1137999999999999999999999998521000
Q ss_pred ---------CCCCCCCCCCCCCCccHHHHHHHHhhCCccEEEecCChHHHHHHhhcCCCcccccchHHHHhh-hhCCccc
Q 012894 100 ---------PSPKPYPHKPPKCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKG-IKGHGYY 169 (454)
Q Consensus 100 ---------~~~~P~~~~P~~~S~E~~lH~~IYr~rdv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~-~~G~~~~ 169 (454)
....+ .+++||+|++||+.|| .++|.|+||++++++++.... . ++++. +++
T Consensus 82 ~~~v~~~~~~~~~~---~~~~PS~Et~lH~~i~----~~~v~HtH~~~~~a~a~~~~~---~-----~~~~~~~g~---- 142 (676)
T TIGR02632 82 DEMVAYLPHCLFNL---NGRAPSIDTPLHAFVP----FKHVDHMHPDAIIALACAENG---R-----ELTEEIFGD---- 142 (676)
T ss_pred HHHHHHHHhcccCC---CCCCCCccHHHHhhcc----cceEEecCchHHHHHhcCccH---H-----HHHHHHcCC----
Confidence 00001 1235599999999998 477889999999999988642 2 22222 222
Q ss_pred cccceeeeeCC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCC------
Q 012894 170 DELVVPIIENT-AYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGL------ 242 (454)
Q Consensus 170 ~~~~VPiv~~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~------ 242 (454)
.||++||. |+ .+|++.+.+.++++|+.++|||+|||+++||+|++|||.+++.+|+.|++++.++..|.
T Consensus 143 ---~v~~vpy~~pG-~~La~~~~~~~~~~~~~~~vll~~HGl~~~G~~~~eA~~~~~~~e~~a~~~~~~~~~g~~~~~~~ 218 (676)
T TIGR02632 143 ---EVVWVPWRRPG-FQLGLDIAAQVDANPQAKGVVLEGHGLVVWGDTAKECYERTLSIINEAEQFIEEKRGGEAPFGGA 218 (676)
T ss_pred ---eEEEeccccCC-hHHHHHHHHHHHhCCCCcEEEEcCCCeEEecCCHHHHHHHHHHHHHHHHHHHHhccccccCCccc
Confidence 48888886 76 57999999999877777999999999999999999999999999999999999999876
Q ss_pred -CCCCCCCchhhhhhcccCC--CCCCccccccccCCCCCCCCCCCeEEE-------Eeeecccccccccccccchhhh
Q 012894 243 -DWSTPNHGPTRNFKLGLGS--NGNVNTSAKAVTEGSDYGSGLFPRCIV-------LDIEGTTTPISFVSEVLFPYAR 310 (454)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~il-------lDIEGTt~~isFV~d~LFPYa~ 310 (454)
+..++++ +++...+.+-. -|.. |..+ +--+++++++.+-.++ |-==||.||-.|+|-.-.|...
T Consensus 219 ~~~~l~~~-~~~~~~~~~~~~~r~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~pdh~~rtk~~p~~~ 292 (676)
T TIGR02632 219 AYAALPKE-ERRALLAAIMPVLRGAI--SHQR-RMIGTFDDSDPVLEFVNSKEAPRLAALGTSCPDHFLRTKIRPLFI 292 (676)
T ss_pred ccccccch-hhhhHHHHHHHHHhhhh--hhcc-ceEEEecCCHHHHHHhcCcchHHHHhCCCCCCCeEEEeccccccc
Confidence 4444444 43332111100 0000 0000 1234455554433222 1123999999999997778443
No 38
>COG3347 Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=4.2e-16 Score=157.41 Aligned_cols=246 Identities=16% Similarity=0.145 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHc-CCccccCceEEEEeCCCCCC-CCccEEEEeCCCCCCCCCCCCCEEEEeCCCC----cccC-------
Q 012894 33 LISELCRHFYTL-GWVSGTGGSITIKVHDDSIP-KPQQLILMSPSGVQKERMEPEDMYVLSGNGT----TLSS------- 99 (454)
Q Consensus 33 eLa~a~R~L~~~-Gl~~~~~GNISvRv~~~~~~-~~~~~flItpSG~~~~~l~~eDlv~VdldG~----~v~g------- 99 (454)
+++-.+|.+... .++...|||.|++..+.-+. ++.+.+||+.||.+++.++.+.+.-|.++.- ..+.
T Consensus 19 ~lvY~S~liGsdp~lv~~GGGNTS~K~~~~dl~G~~v~vmwVKgSG~dl~ti~~~gf~~v~l~~Ll~l~~~~~~~d~eMV 98 (404)
T COG3347 19 LLVYRSRLIGSDPDLVLHGGGNTSVKTGETDLVGEEVEVLWVKGSGWDLATIKADGFVPVRLDPLLALKKLDKLPDEEMV 98 (404)
T ss_pred HHHHHHhhhcCChhheecCCCccceeeeccccCCceeEEEEEeccccchhhhccCCCcccchHhHHHHHhcCCCCHHHHH
Confidence 444445555322 57778899999998764111 2345789999999999999999888776531 1111
Q ss_pred -----CCCCCCCCCCCCCCccHHHHHHHHhhCCccEEEecCChHHHHHHhhcCCCcccccchHHHHhhhhCCccccccce
Q 012894 100 -----PSPKPYPHKPPKCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVV 174 (454)
Q Consensus 100 -----~~~~P~~~~P~~~S~E~~lH~~IYr~rdv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~~~~~G~~~~~~~~V 174 (454)
.-..|+ . ++||.|+.+|..+ +-+.|.|+||..+++++++... -+.++.+.|. .+
T Consensus 99 ~~l~~~~~n~~--~-PrPSIET~LHAfl----P~k~VdHtH~dAiiaIa~~~n~--------~~l~~~I~Gd------~~ 157 (404)
T COG3347 99 GYLRHCMLNPS--A-PRPSIETLLHAFL----PFKVVDHTHADAIIAIAVQANG--------KALIREIFGD------RV 157 (404)
T ss_pred HHHHHhhcCCC--C-CCcchhhhhHhhc----CcccccccCccceeeeccCCCH--------HHHHHHhcCC------eE
Confidence 001221 1 2569999999988 4799999999999999887653 1233333342 25
Q ss_pred eeeeCC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCch
Q 012894 175 PIIENT-AYENELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDW--STPNHGP 251 (454)
Q Consensus 175 Piv~~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~--~~~~~~~ 251 (454)
-++||. | .-+|+..+++.++.+|+..+++|.|||+++||+|..|||+++..+-.-|+.++..+ |++. .++...+
T Consensus 158 ~~vPYvrP-Gf~La~~iae~~~~~p~~~glvL~~HGL~t~gdtak~~Ye~~I~~V~~Ae~~l~~~--~g~~~~~~a~p~r 234 (404)
T COG3347 158 VWVPYVRP-GFPLAKAIAERFKANPDAEGLVLENHGLFTFGDTAKEAYERMISIVNEAEEYLARR--GGKVAKSLARPVR 234 (404)
T ss_pred EEEeccCC-CchHHHHHHHHHhhCCCceEEEeccccceEecccHHHHHHHHHHHHHHHHHHHHhh--CCcccccCCCccc
Confidence 566664 6 45799999999999999999999999999999999999999999999999988887 3332 2222222
Q ss_pred hhhh-------hcccCCCCCCccccccccCCCCCCCCCCCeEEEEee-------ecccccccccccccchhhhh
Q 012894 252 TRNF-------KLGLGSNGNVNTSAKAVTEGSDYGSGLFPRCIVLDI-------EGTTTPISFVSEVLFPYARD 311 (454)
Q Consensus 252 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~illDI-------EGTt~~isFV~d~LFPYa~~ 311 (454)
.... |.+.+. + ..--++|++++.+..+..+- -||.||-.|++-.-=|...+
T Consensus 235 ~a~~a~l~p~iRgavs~--------~-~~~i~~~~~~~avl~f~~s~~~~~ia~~G~a~PDHvIrtK~~plv~~ 299 (404)
T COG3347 235 LAIAADLAPVIRGAVSE--------K-KKKIYRLDDSDAVLEFANSLDLRRIAQRGSATPDHVIRTKIGPLVAD 299 (404)
T ss_pred ccchhhhhHHHHHhhhc--------c-cceeeeccCcHHHHHHhcCcchhhHHhcCCCCCceEEEecccceEec
Confidence 1111 211110 0 01233455555444333322 39999999999887776655
No 39
>KOG3699 consensus Cytoskeletal protein Adducin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.50 E-value=4.5e-14 Score=149.34 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=119.4
Q ss_pred CCCCCCCCCCEEEEeCCCCcccCCCCCCCCCCCCCCCccHHHHHHHHhhC-CccEEEecCChHHHHHHhhcCCCcccccc
Q 012894 77 VQKERMEPEDMYVLSGNGTTLSSPSPKPYPHKPPKCSDCAPLFMKAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRIT 155 (454)
Q Consensus 77 ~~~~~l~~eDlv~VdldG~~v~g~~~~P~~~~P~~~S~E~~lH~~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~ 155 (454)
..+.+++.+.++++|..|++++-...+- +...+.+.+|.+||..| |+|||||.|++...|.+.+.+. .+|++
T Consensus 87 ~~~he~tas~l~kv~~~g~iv~qgs~~~-----~vn~sgf~lhsai~~a~p~vrc~ihi~t~~~aavs~mk~g--llp~s 159 (598)
T KOG3699|consen 87 LLYHEITASSLVKVNIQGEIVDQGSTNL-----GVNQSGFFLHSAIYAARPDVRCIIHIHTSAVAAVSSMKCG--LLPLS 159 (598)
T ss_pred hhhhhcccccceeecccchhhhcccccc-----cccccccchhhhhhccCCceeEEEEeccchHHHHHHhhhc--ccccc
Confidence 6788999999999999999998643321 23356799999999999 9999999999999999998874 46666
Q ss_pred hHHHHhhhhCCccccccceeeeeCCCCcH--HHHHHHHHHHhcCCCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHH
Q 012894 156 HMEMIKGIKGHGYYDELVVPIIENTAYEN--ELTDSLAKAIDAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDA 233 (454)
Q Consensus 156 ~~e~~~~~~G~~~~~~~~VPiv~~~p~~~--ela~~ia~~L~~~p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i 233 (454)
+-.+. + | .|.+++|.+.-+ +--..+...|+ |. ++.+|+|||++++|++++|||+.+..+..+|++
T Consensus 160 ~~a~~--l-g-------~~~~~dy~~~~e~~~~~~~~~~~lg--~~-kvl~lrN~g~~~~g~t~eeA~~~~~~~~~ace~ 226 (598)
T KOG3699|consen 160 QEALV--L-G-------EVAYYDYQGILEDEEERIPLQKNLG--PK-KVLVLRNHGVVSVGETVEEAFYYIFNLVLACEI 226 (598)
T ss_pred ccccc--c-c-------ceeeeecccccccchhhhhHHhhcC--cc-ceEEEecccccccchhHHHHHHHhhcchhhhhh
Confidence 55443 2 2 266777654322 22234445555 34 999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCC-CCCchhh
Q 012894 234 AIKLHQLGLDWST-PNHGPTR 253 (454)
Q Consensus 234 ~l~A~~~G~~~~~-~~~~~~~ 253 (454)
|+.+.+-|....+ ++++.++
T Consensus 227 qv~~~a~g~dnl~~~~~~~~~ 247 (598)
T KOG3699|consen 227 QVSASAGGLDNLILLEEEKYK 247 (598)
T ss_pred hhhhcccCccccccCcHhhhh
Confidence 9997777765444 4444433
No 40
>KOG3699 consensus Cytoskeletal protein Adducin [Signal transduction mechanisms; Cytoskeleton]
Probab=97.61 E-value=2.7e-05 Score=83.56 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=115.6
Q ss_pred HcCCccccCceEEEEeCCCCCCCCccEEEEeCCCCCCCCCCCCCEEEEeCCCCcccCCCC--CCCCCCCCCCCccHHHHH
Q 012894 43 TLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLSSPSP--KPYPHKPPKCSDCAPLFM 120 (454)
Q Consensus 43 ~~Gl~~~~~GNISvRv~~~~~~~~~~~flItpSG~~~~~l~~eDlv~VdldG~~v~g~~~--~P~~~~P~~~S~E~~lH~ 120 (454)
..+|..+..+++.+|+.+. -.-.-++++|.+..+.+.+..+..++|.+|....+.-. .- ..+ +.-+..|.
T Consensus 363 ~~~~ne~s~~~~pVrIedP---~qfvp~~~NP~Evle~rnkIreqnr~D~ksAGPQSqlL~~V~-~e~----s~~~~~~S 434 (598)
T KOG3699|consen 363 KEDWNEGSASHTPVRIEDP---NQFVPLLINPKEVLEMRNKIREQNRQDVKSAGPQSQLLASVT-AEK----SRSLSTHS 434 (598)
T ss_pred eccccccccCCceeeccCC---CCccccccCHHHHHHHHhhHHHhhhccccccCCCcceeccee-ccc----ccccchhh
Confidence 3468888999999998741 01235899999999999999999999999876544210 00 011 22234899
Q ss_pred HHHhhC-CccEEEecCChHHHHHHhhcCCCcccccchHHHH-hhhhCCccccccceeeeeCCCCcHHHHHHHHHHHhcCC
Q 012894 121 KAYEKR-DAGAVIHSHGIESCLVTMINPMSKEFRITHMEMI-KGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYP 198 (454)
Q Consensus 121 ~IYr~r-dv~aVvHtHp~~~~ala~~~~~~~~lp~~~~e~~-~~~~G~~~~~~~~VPiv~~~p~~~ela~~ia~~L~~~p 198 (454)
+|++.+ +++||+|.|.+....-.+..... .+. ..+.. +..+. +++...++.- ++.. + ++.+
T Consensus 435 ai~~~r~e~k~v~h~~~~pnpf~~ltd~eL--~EY-kqeverk~~~~--~~d~d~~~~d---~~e~--a-------kd~~ 497 (598)
T KOG3699|consen 435 AIHQVRPEVKCVCHRHYPPNPFVSLTDHEL--LEY-KQEVERKGKGV--YHDYDGILSD---PGEQ--A-------KDLA 497 (598)
T ss_pred hhhhcCCcccceeecccCCCcccccCchhh--hhh-hhhhhccCccc--cccccccccc---cccc--c-------cccc
Confidence 999999 99999999988876666655421 111 11111 11111 1111112221 1111 1 3334
Q ss_pred CCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 012894 199 KATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDW 244 (454)
Q Consensus 199 ~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~ 244 (454)
+.+ ++++|||+.+.|++++ |...+-..|.+|+.+.....++.+-
T Consensus 498 ~~p-v~~~nh~i~Tq~~~V~-aa~~~sl~~~a~~~q~s~as~~~~~ 541 (598)
T KOG3699|consen 498 DSP-VILRNHGIMTQGESVE-AAYLLSLMELACETQLSIASATAPG 541 (598)
T ss_pred cCC-cccccccceecccccc-cchhhHHHHHHHHhhhhhccccCCC
Confidence 567 9999999999999999 8888889999999998887776663
No 41
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.18 E-value=0.00075 Score=60.18 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=30.3
Q ss_pred cccccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 397 NELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 397 G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
..-..++||++.+.|++|+++|++++|.|+++..
T Consensus 72 ~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~ 105 (176)
T PF13419_consen 72 LESKLQPYPGVRELLERLKAKGIPLVIVSNGSRE 105 (176)
T ss_dssp HHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHH
T ss_pred hhhccchhhhhhhhhhhcccccceeEEeecCCcc
Confidence 3467899999999999999999999999999743
No 42
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.11 E-value=0.0031 Score=60.15 Aligned_cols=30 Identities=27% Similarity=0.105 Sum_probs=27.4
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..++||+|.+.|+.|+++|++++|.|+++.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~ 119 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPL 119 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcH
Confidence 478999999999999999999999999763
No 43
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.85 E-value=0.0083 Score=56.81 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=32.3
Q ss_pred Hhhhhcccccc-ccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 389 IWRTGFESNEL-EGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 389 iW~~gy~~G~l-~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
.|.+-|..-.. ...+||++.++|+.++++|++++|.|++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~ 121 (226)
T PRK13222 79 LFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTP 121 (226)
T ss_pred HHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 34444543221 4679999999999999999999999988743
No 44
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.54 E-value=0.026 Score=53.41 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=27.0
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.++||++.+.|++++++|++++|.|++..
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~ 121 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLP 121 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCch
Confidence 57999999999999999999999999964
No 45
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.22 E-value=0.045 Score=51.06 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=26.7
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
-.+|||+.++|++++++|++++|-|+++.
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~ 119 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSP 119 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCH
Confidence 36899999999999999999999999875
No 46
>PLN02954 phosphoserine phosphatase
Probab=96.18 E-value=0.045 Score=51.98 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=26.7
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..+||++.+.|+.++++|++++|-|||..
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~ 111 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFR 111 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcH
Confidence 46999999999999999999999999863
No 47
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.13 E-value=0.041 Score=54.76 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 388 HIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 388 ~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..|++-|....-..++||++.+.|++.+++|++++|-|+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~ 128 (272)
T PRK13223 87 ALFMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPE 128 (272)
T ss_pred HHHHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcH
Confidence 456666766544578999999999999999999999998764
No 48
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=95.87 E-value=0.052 Score=50.92 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=31.5
Q ss_pred hhhhcccccc-ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 390 WRTGFESNEL-EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 390 W~~gy~~G~l-~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
|.+-|..-.. ...+||++.+.|+.++++|++++|.|+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~ 112 (213)
T TIGR01449 72 FDRHYEEVAGELTSVFPGVEATLGALRAKGLRLGLVTNKPT 112 (213)
T ss_pred HHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCH
Confidence 4445544222 368999999999999999999999999864
No 49
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.84 E-value=0.21 Score=46.71 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=26.0
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
..+||++.++|++++++|++++|.|++.
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~ 131 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFD 131 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCc
Confidence 4799999999999999999999999875
No 50
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.81 E-value=0.021 Score=53.84 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=27.2
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+||++.+.|++++++|++++|.|+++.
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFP 121 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 467899999999999999999999998754
No 51
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=95.80 E-value=0.067 Score=50.57 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=26.9
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.++||++.+.|++++++|++++|-|+++.
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~ 109 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMR 109 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCH
Confidence 57999999999999999999999999863
No 52
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=95.56 E-value=0.11 Score=49.85 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=26.9
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.+.+||++.+.|++++++|++++|.||-+
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~ 115 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKP 115 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCc
Confidence 67899999999999999999999999854
No 53
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=95.52 E-value=0.08 Score=52.49 Aligned_cols=29 Identities=7% Similarity=-0.154 Sum_probs=27.0
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..+||++.+.|+.++++|++++|-||++.
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~ 136 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPR 136 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCH
Confidence 56899999999999999999999999874
No 54
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=95.44 E-value=0.14 Score=49.38 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=27.3
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..++||++.+.|++.+++|++++|-|+++.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~ 122 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPE 122 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCH
Confidence 357999999999999999999999999864
No 55
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.33 E-value=0.042 Score=48.97 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=27.8
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcccc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFSCR 431 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~~ 431 (454)
....+|++.+.|+.++++|++++|.||+....
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~ 93 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRA 93 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHH
Confidence 44578999999999999999999999998543
No 56
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.29 E-value=0.24 Score=45.82 Aligned_cols=29 Identities=17% Similarity=-0.039 Sum_probs=26.5
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.++||++.+.|+..+++|++++|-|+|..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~ 107 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIM 107 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcH
Confidence 36999999999999999999999999863
No 57
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.21 E-value=0.11 Score=50.34 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=25.5
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
..+||||.+.|+++++. ++++|-|||+.-
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~ 140 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ 140 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch
Confidence 57999999999999875 999999998754
No 58
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=95.19 E-value=0.13 Score=49.21 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=26.8
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..+||++.+.|+..+++|++++|-|+|..
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~ 101 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMD 101 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcH
Confidence 57999999999999999999999999963
No 59
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.19 E-value=0.14 Score=48.41 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=26.2
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.++||++.+.|++++++|++++|-|+|+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~ 111 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGF 111 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCc
Confidence 3689999999999999999999999986
No 60
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.16 E-value=0.14 Score=48.45 Aligned_cols=31 Identities=19% Similarity=-0.028 Sum_probs=27.9
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
..++||++.+.|+..+++|++++|-|+++..
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~ 115 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRD 115 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchH
Confidence 3589999999999999999999999988753
No 61
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=94.96 E-value=0.14 Score=46.79 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=26.3
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCC
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFS 427 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~ 427 (454)
..++||++.+.|+.++++|++++|-|++
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~ 113 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS 113 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc
Confidence 3789999999999999999999999987
No 62
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=94.92 E-value=0.16 Score=49.51 Aligned_cols=30 Identities=17% Similarity=-0.002 Sum_probs=27.1
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+.++||++.+.|++++++|++++|=|+++.
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~ 126 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTR 126 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcH
Confidence 468999999999999999999999888763
No 63
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=94.76 E-value=0.26 Score=48.16 Aligned_cols=30 Identities=7% Similarity=-0.074 Sum_probs=27.4
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..++||++.+.|++++++|++++|-|+++.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~ 135 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPR 135 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCH
Confidence 457899999999999999999999999874
No 64
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=94.73 E-value=0.074 Score=48.26 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=27.8
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
.++||++.++|++++++|++++|.|+++..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~ 113 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRD 113 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchH
Confidence 579999999999999999999999998864
No 65
>PRK11587 putative phosphatase; Provisional
Probab=94.63 E-value=0.2 Score=47.71 Aligned_cols=30 Identities=10% Similarity=-0.035 Sum_probs=27.4
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+||++.+.|+.++++|++++|-|+++.
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~ 110 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSV 110 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCc
Confidence 457999999999999999999999999864
No 66
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=94.56 E-value=0.25 Score=47.62 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=27.1
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
+.++||++.+.|+.++++|++++|-||++
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~ 119 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAH 119 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcC
Confidence 36899999999999999999999999986
No 67
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=94.52 E-value=0.2 Score=50.05 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=27.3
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+||++.+.|+..+++|+++.|-||++.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~ 169 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSR 169 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCH
Confidence 347899999999999999999999999874
No 68
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=94.41 E-value=0.059 Score=45.38 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=27.8
Q ss_pred ccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 398 ELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 398 ~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
..+..+||++.+.|++++++|++++|.|++.
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~ 50 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKS 50 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCch
Confidence 4567899999999999999999999999886
No 69
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=94.26 E-value=0.13 Score=54.94 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=27.7
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
..++||++.+.|+.++++|++++|-||++..
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~ 358 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTE 358 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchH
Confidence 3579999999999999999999999998653
No 70
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=94.21 E-value=0.22 Score=45.39 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=26.9
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.+++|++.+.|+.++++|++++|-|+++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~ 99 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGND 99 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcH
Confidence 58999999999999999999999999864
No 71
>PLN02940 riboflavin kinase
Probab=94.20 E-value=0.21 Score=52.29 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=27.2
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+..+||++.+.|++++++|++++|-|+++.
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~ 120 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPR 120 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcH
Confidence 357899999999999999999999999863
No 72
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=93.57 E-value=0.31 Score=45.69 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=26.0
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.+||++.+.|++++++|++++|-|+++.
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~ 111 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNR 111 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCch
Confidence 5899999999999999999999999863
No 73
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=93.56 E-value=0.8 Score=42.73 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=25.7
Q ss_pred cccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 399 LEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 399 l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+..|.+.+.|++++++|++++|-|+++.
T Consensus 103 ~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~ 133 (197)
T TIGR01548 103 IEDETLLTPKGLLRELHRAPKGMAVVTGRPR 133 (197)
T ss_pred hccccccCHHHHHHHHHHcCCcEEEECCCCH
Confidence 3445666679999999999999999999864
No 74
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=93.56 E-value=0.27 Score=44.86 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=25.7
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.++||+|.+.|++.+++|++++|-|++.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~ 113 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK 113 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc
Confidence 4799999999999999999999998764
No 75
>PRK09449 dUMP phosphatase; Provisional
Probab=93.53 E-value=1.3 Score=41.91 Aligned_cols=28 Identities=14% Similarity=0.041 Sum_probs=24.8
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..+||++.+.|++++ +|++++|-|+++.
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~ 121 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFT 121 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcH
Confidence 568999999999999 6899999999763
No 76
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=93.14 E-value=0.52 Score=49.53 Aligned_cols=28 Identities=7% Similarity=-0.162 Sum_probs=26.6
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.++||++.+.|+..+++|++++|-||+.
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~ 242 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRP 242 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 5799999999999999999999999987
No 77
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=93.13 E-value=0.22 Score=47.46 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=27.4
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..+++|++.+.|+.++++|++++|-|+|.-
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~ 97 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMD 97 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcH
Confidence 368999999999999999999999999953
No 78
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=93.10 E-value=0.43 Score=46.99 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=26.8
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+||++.+.|+..+++|++++|=||++.
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~ 128 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTR 128 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcH
Confidence 357899999999999999999999887765
No 79
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.19 E-value=0.71 Score=43.55 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=25.7
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.-+.||++.+.|++++++ ++++|-|-|.
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~ 124 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGA 124 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCC
Confidence 678999999999999998 9999999984
No 80
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=91.77 E-value=1 Score=42.03 Aligned_cols=29 Identities=17% Similarity=0.036 Sum_probs=25.4
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
.++||++.+.|+..+++ ++++|-|++...
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~ 95 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYE 95 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHH
Confidence 46799999999999999 999999888753
No 81
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=91.54 E-value=1.2 Score=45.76 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=27.3
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.+++|++.+.|+..+++|+++.|.|+|+.
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~ 208 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFT 208 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcc
Confidence 56999999999999999999999999985
No 82
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=91.44 E-value=1.2 Score=41.14 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=28.2
Q ss_pred ccccccccCCCHHHHHHHHHHCCCeEEEecCC
Q 012894 396 SNELEGEVFDDVPEALEKWHSLGTKVFSFSFS 427 (454)
Q Consensus 396 ~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~ 427 (454)
...+.-+++||+.++|++++++|++++|.|..
T Consensus 121 ~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD 152 (215)
T PF00702_consen 121 LFGLRDPLRPGAKEALQELKEAGIKVAILTGD 152 (215)
T ss_dssp EEEEEEEBHTTHHHHHHHHHHTTEEEEEEESS
T ss_pred EEeecCcchhhhhhhhhhhhccCcceeeeecc
Confidence 34577789999999999999999999999954
No 83
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=91.01 E-value=1.1 Score=42.43 Aligned_cols=27 Identities=19% Similarity=-0.015 Sum_probs=23.3
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+||++.+.|++. +++++|.|++..
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~ 112 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPV 112 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcH
Confidence 367899999999998 489999999864
No 84
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=90.48 E-value=4.5 Score=37.86 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=25.7
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..+||++.+.|++++++ ++++|=|+++.
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~ 123 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVR 123 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCch
Confidence 57999999999999999 99999999864
No 85
>PRK11590 hypothetical protein; Provisional
Probab=90.16 E-value=3 Score=39.60 Aligned_cols=38 Identities=24% Similarity=0.115 Sum_probs=28.6
Q ss_pred HhhhhccccccccccCCCHHHHHH-HHHHCCCeEEEecCCcc
Q 012894 389 IWRTGFESNELEGEVFDDVPEALE-KWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 389 iW~~gy~~G~l~~~~y~Dv~~~l~-~w~~~g~~lyiYSS~~~ 429 (454)
-|++-|..- ..+||++.+.|+ ..+++|.++.|=||+.-
T Consensus 85 ~f~~~~~~~---~~~~pga~e~L~~~l~~~G~~l~IvSas~~ 123 (211)
T PRK11590 85 DFVRWFRDN---VTAFPVVQERLTTYLLSSDADVWLITGSPQ 123 (211)
T ss_pred HHHHHHHHh---CcCCccHHHHHHHHHHhCCCEEEEEeCCcH
Confidence 366666432 456999999995 45678999999888764
No 86
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.38 E-value=2.2 Score=50.66 Aligned_cols=30 Identities=23% Similarity=0.136 Sum_probs=26.9
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+||++.+.|++++++|++++|-|++..
T Consensus 159 ~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~ 188 (1057)
T PLN02919 159 SGIGFPGALELITQCKNKGLKVAVASSADR 188 (1057)
T ss_pred cCccCccHHHHHHHHHhCCCeEEEEeCCcH
Confidence 345899999999999999999999999764
No 87
>PHA02597 30.2 hypothetical protein; Provisional
Probab=89.14 E-value=1.6 Score=40.64 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=21.8
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
..+||++.+.|+++++++ ++++-||++
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~ 99 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALG 99 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCc
Confidence 458999999999999875 566667765
No 88
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=89.11 E-value=1.7 Score=41.69 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=33.7
Q ss_pred hccCchhHHHHHHHHhhhhccccccccccCCCHHHHHHHH-HHCCCeEEEecCCcc
Q 012894 375 ADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKW-HSLGTKVFSFSFSFS 429 (454)
Q Consensus 375 ~D~K~t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w-~~~g~~lyiYSS~~~ 429 (454)
......-+.++ ..-|.+-|.. ...+||++.+.|+++ +++|.++.|=|++..
T Consensus 71 ~g~~~~~l~~~-~~~f~~~~~~---~~~l~pga~e~L~~~l~~~G~~v~IvSas~~ 122 (210)
T TIGR01545 71 FGHREAHLQDL-EADFVAAFRD---KVTAFPLVAERLRQYLESSDADIWLITGSPQ 122 (210)
T ss_pred cCCCHHHHHHH-HHHHHHHHHH---hCCCCccHHHHHHHHHHhCCCEEEEEcCCcH
Confidence 34433444433 3346666643 135899999999754 668999999998863
No 89
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=88.32 E-value=1.6 Score=43.70 Aligned_cols=28 Identities=21% Similarity=0.082 Sum_probs=26.0
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.+||++.+.|+.++++|++++|-|+++.
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~ 171 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNE 171 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCH
Confidence 7999999999999999999999999753
No 90
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=88.12 E-value=1.6 Score=39.83 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHCCCeEEEecCCc
Q 012894 405 DDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 405 ~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
|++.+.|+..+++|.+++|=|+|.
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~ 115 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP 115 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc
Confidence 445599999999999999999884
No 91
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=87.78 E-value=0.97 Score=40.88 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=25.5
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.++|++.+.|+.++++|.+++|-|+|..
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~ 100 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFD 100 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcH
Confidence 3799999999999999999999999864
No 92
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=87.52 E-value=4 Score=39.29 Aligned_cols=39 Identities=18% Similarity=-0.056 Sum_probs=31.5
Q ss_pred hhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 390 WRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 390 W~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
+.+.+..-.-....+|++.++|++++++|+++.+=||++
T Consensus 74 ~~~~~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~ 112 (221)
T COG0637 74 LYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSP 112 (221)
T ss_pred HHHHHHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCCh
Confidence 334444545566899999999999999999999988886
No 93
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=87.35 E-value=0.64 Score=40.41 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=33.1
Q ss_pred hhccccccccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 392 TGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 392 ~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
..|.++.-...+||++.++|++++++|++++|-|.++.+
T Consensus 15 ~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~ 53 (132)
T TIGR01662 15 VPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGI 53 (132)
T ss_pred CCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccc
Confidence 356666666789999999999999999999999998743
No 94
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=86.96 E-value=1.4 Score=40.95 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=27.9
Q ss_pred ccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 398 ELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 398 ~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.+...+||++.+.|++++++|.+++|=|+|.
T Consensus 83 ~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~ 113 (202)
T TIGR01490 83 KIESILYPEARDLIRWHKAEGHTIVLVSASL 113 (202)
T ss_pred HHHHhccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4677899999999999999999999998775
No 95
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=82.71 E-value=5.5 Score=36.51 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=23.4
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
...+||++.+.|++.+ .+++|.||++..
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~ 109 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRA 109 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHH
Confidence 4468999999999987 489999998753
No 96
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=81.24 E-value=19 Score=32.81 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=21.1
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.++|| ..+.|+.+++. ++++|-||++.
T Consensus 87 ~~~~~-~~e~L~~L~~~-~~l~I~T~~~~ 113 (188)
T PRK10725 87 VEPLP-LIEVVKAWHGR-RPMAVGTGSES 113 (188)
T ss_pred CCCcc-HHHHHHHHHhC-CCEEEEcCCch
Confidence 36788 57899998765 89999888753
No 97
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=79.46 E-value=2.1 Score=39.49 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=31.4
Q ss_pred hccccccccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 393 GFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 393 gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
+|..-.-+-.+||+|.+.|++++++|++++|-||.+..
T Consensus 17 ~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~ 54 (176)
T TIGR00213 17 GYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGI 54 (176)
T ss_pred CCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 44443445668999999999999999999999999863
No 98
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=78.62 E-value=20 Score=34.50 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=27.5
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
-.++|++.+.++.++++|.++.|-|.|..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~ 104 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFT 104 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChH
Confidence 78999999999999999999999999976
No 99
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=78.14 E-value=2.5 Score=39.54 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=27.6
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..++||++.+.|++++++|++++|.|+++.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~ 102 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSG 102 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCch
Confidence 468999999999999999999999999864
No 100
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=76.67 E-value=2.8 Score=37.46 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=26.2
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.+||++.+.|+.|+++|++++|-|+++.
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999863
No 101
>PRK06769 hypothetical protein; Validated
Probab=75.22 E-value=3.2 Score=38.36 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=25.3
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.+||+|.+.|++.+++|++++|-||++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCc
Confidence 489999999999999999999999876
No 102
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=74.61 E-value=3 Score=38.52 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=29.5
Q ss_pred ccccccccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 394 FESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 394 y~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
|...-=.-.+||++.+.|++++++|++++|-|+++.
T Consensus 21 ~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 21 YVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred ccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 333333557899999999999999999999998873
No 103
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=73.57 E-value=3.7 Score=37.88 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 403 VFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 403 ~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+||++.+.|++.+++|++++|-|+++.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 689999999999999999999999876
No 104
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=72.84 E-value=4 Score=37.54 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=25.9
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.+||+|.+.|++++++|++++|-|+.++
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g 56 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDG 56 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCcc
Confidence 5899999999999999999999999753
No 105
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=72.32 E-value=6.9 Score=35.34 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=18.4
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.++|||+.+.|+ +++|-|+++.
T Consensus 89 ~~~~~g~~~~L~-------~~~i~Tn~~~ 110 (175)
T TIGR01493 89 LPPWPDSAAALA-------RVAILSNASH 110 (175)
T ss_pred CCCCCchHHHHH-------HHhhhhCCCH
Confidence 458999999999 4889998864
No 106
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=67.79 E-value=5.6 Score=37.24 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.4
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCC
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFS 427 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~ 427 (454)
+.++||+|.+.|+..+++|++++|-||.
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~ 70 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWN 70 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999999999999999987
No 107
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=66.95 E-value=5.8 Score=36.51 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=25.9
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.+||++.+.|++++++|++++|-|+++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCc
Confidence 789999999999999999999999987
No 108
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=64.74 E-value=4.5 Score=35.03 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=19.9
Q ss_pred eEEEEeeecccccc-----cccccccchhhhhhhhhH
Q 012894 285 RCIVLDIEGTTTPI-----SFVSEVLFPYARDNVGKH 316 (454)
Q Consensus 285 ~~illDIEGTt~~i-----sFV~d~LFPYa~~~l~~~ 316 (454)
|++++|++||++.. ++=...+||-+++-|..+
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L 37 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAEL 37 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHH
Confidence 68999999999952 111224566555555433
No 109
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=64.35 E-value=6.9 Score=35.11 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=28.3
Q ss_pred cccccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 397 NELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 397 G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
+.....+||++.++|+..+ ++++++|+||++.-
T Consensus 40 ~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~ 72 (148)
T smart00577 40 HGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRM 72 (148)
T ss_pred EEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHH
Confidence 3567789999999999997 68999999999753
No 110
>PLN02811 hydrolase
Probab=62.48 E-value=8 Score=36.74 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=27.0
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
...+||+|.+.|+.++++|++++|-|+++.
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~ 105 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHK 105 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCch
Confidence 357899999999999999999999998764
No 111
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=62.47 E-value=5.2 Score=35.07 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=26.0
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
++||++.+.|+..+++|++++|=||++.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~ 56 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDD 56 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCC
Confidence 7999999999999999999999999843
No 112
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=62.20 E-value=4.8 Score=39.04 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=34.6
Q ss_pred hhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 380 TALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 380 t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
..|=++-|-+|.. ..+||++.++|++++++|++++|-|+++.
T Consensus 10 ~~~~D~dG~l~~~--------~~~~pga~e~L~~L~~~G~~~~ivTN~~~ 51 (242)
T TIGR01459 10 VFLLDLWGVIIDG--------NHTYPGAVQNLNKIIAQGKPVYFVSNSPR 51 (242)
T ss_pred EEEEecccccccC--------CccCccHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4555677777763 45799999999999999999999999654
No 113
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=59.17 E-value=7.2 Score=35.66 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=23.7
Q ss_pred EEEEeeecccccccccccccchhhhhhhhhHHhhccCChhhHHHHHHHHH
Q 012894 286 CIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYDTAETQDDIKLLRS 335 (454)
Q Consensus 286 ~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~~~~~~~~~~~~i~~~~~ 335 (454)
.|++||+||++.-. +...+.|+ +.++|-.|.+.+.++.+++
T Consensus 1 iVisDIDGTL~~sd-~~~~~~~~--------~~~~~~~~~~~~a~~~l~~ 41 (157)
T smart00775 1 IVISDIDGTITKSD-VLGHVVPI--------IGKDWTHPGVAKLYRDIQN 41 (157)
T ss_pred CEEEecCCCCcccc-cccccccc--------cccCcCCHHHHHHHHHHHH
Confidence 47899999999643 11123332 2334555666666665554
No 114
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=58.85 E-value=9.2 Score=34.01 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=11.8
Q ss_pred eEEEEeeeccccc
Q 012894 285 RCIVLDIEGTTTP 297 (454)
Q Consensus 285 ~~illDIEGTt~~ 297 (454)
|+|++||+||++.
T Consensus 2 K~i~~DiDGTL~~ 14 (126)
T TIGR01689 2 KRLVMDLDNTITL 14 (126)
T ss_pred CEEEEeCCCCccc
Confidence 7899999999975
No 115
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=57.28 E-value=51 Score=32.40 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=24.7
Q ss_pred CeEEEEeeecccccccccccccchhhhhhhhhHH
Q 012894 284 PRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHL 317 (454)
Q Consensus 284 ~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l 317 (454)
+|.|++|++||+-.-.-..+.++|-+.+.+...-
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~ 34 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLR 34 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHH
Confidence 5789999999996442211238999988888754
No 116
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=56.82 E-value=11 Score=34.68 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=15.9
Q ss_pred CCCCCCCeEEEEeeeccccc
Q 012894 278 YGSGLFPRCIVLDIEGTTTP 297 (454)
Q Consensus 278 ~~~~~~~~~illDIEGTt~~ 297 (454)
..+.+..|.+++|++||+..
T Consensus 7 ~~~~~~~k~~~~D~Dgtl~~ 26 (166)
T TIGR01664 7 DGPKPQSKVAAFDLDGTLIT 26 (166)
T ss_pred CCCCCcCcEEEEeCCCceEe
Confidence 34455689999999999875
No 117
>PRK08324 short chain dehydrogenase; Validated
Probab=56.61 E-value=23 Score=39.96 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 012894 198 PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNH 249 (454)
Q Consensus 198 p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~ 249 (454)
|..+++|++|-|++++|.+..+|....+.++.+++....+..+|....++..
T Consensus 345 ~~p~~~l~~g~g~~~~g~~~~~a~~~~d~~~~~~~~~~~a~~~~~~~~l~~~ 396 (681)
T PRK08324 345 PNPRVVLIPGLGMFSFGKDKKTARVAADIYENAINVMRGAEAVGRYEPLSEQ 396 (681)
T ss_pred CCCeEEEECCCceEEeCCCHHHhhhhHHHHHHHHHHHhhhhhcCCccCCChh
Confidence 6789999999999999999999999999999999999999999988777643
No 118
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=55.37 E-value=15 Score=30.96 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 385 LQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 385 LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
+.|-+|. -.+.+|++.++|++.+++|+++++-|-.|..
T Consensus 5 ~dGvl~~--------g~~~ipga~e~l~~L~~~g~~~~~lTNns~~ 42 (101)
T PF13344_consen 5 LDGVLYN--------GNEPIPGAVEALDALRERGKPVVFLTNNSSR 42 (101)
T ss_dssp STTTSEE--------TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS
T ss_pred CccEeEe--------CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4566775 2458999999999999999999999987643
No 119
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=51.91 E-value=9.4 Score=32.30 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=24.8
Q ss_pred eeeeeCCC---CcHHHHHHHHHHHhcCCCCeEEEEcCCceE
Q 012894 174 VPIIENTA---YENELTDSLAKAIDAYPKATAVLVRNHGIY 211 (454)
Q Consensus 174 VPiv~~~p---~~~ela~~ia~~L~~~p~~~aVLL~nHGvl 211 (454)
||+|+..+ ...+++++|.+++.+ .-.+.|.|||+-
T Consensus 1 iPvIDls~~~~~~~~~~~~l~~A~~~---~GFf~l~nhGi~ 38 (116)
T PF14226_consen 1 IPVIDLSPDPADREEVAEQLRDACEE---WGFFYLVNHGIP 38 (116)
T ss_dssp --EEEHGGCHHHHHHHHHHHHHHHHH---TSEEEEESSSSS
T ss_pred CCeEECCCCCccHHHHHHHHHHHHHh---CCEEEEeccccc
Confidence 57777542 245678888888886 688999999964
No 120
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=46.03 E-value=13 Score=33.50 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=12.6
Q ss_pred CeEEEEeeeccccc
Q 012894 284 PRCIVLDIEGTTTP 297 (454)
Q Consensus 284 ~~~illDIEGTt~~ 297 (454)
+|+|++||+||...
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 58999999999986
No 121
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=44.98 E-value=15 Score=36.46 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 384 QLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 384 ~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
++.|-+|.. .+.||++.++|++++++|+++++=|+.|.
T Consensus 8 D~DGtl~~~--------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~ 45 (279)
T TIGR01452 8 DCDGVLWLG--------ERVVPGAPELLDRLARAGKAALFVTNNST 45 (279)
T ss_pred eCCCceEcC--------CeeCcCHHHHHHHHHHCCCeEEEEeCCCC
Confidence 566777773 35899999999999999999999998663
No 122
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=43.13 E-value=19 Score=33.04 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=19.4
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEe-cCCc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSF-SFSF 428 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiY-SS~~ 428 (454)
.-+..|-..-++.-+++|++..|+ +.|.
T Consensus 126 ~v~VGDs~~Di~aA~~aG~~~~i~v~~g~ 154 (176)
T TIGR00213 126 SYMVGDKLEDMQAGVAAKVKTNVLVRTGK 154 (176)
T ss_pred EEEEcCCHHHHHHHHHCCCcEEEEEecCC
Confidence 335678888888889999986433 4443
No 123
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=42.89 E-value=46 Score=37.65 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 012894 198 PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHG 250 (454)
Q Consensus 198 p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~ 250 (454)
|..+++|+.+-|++.+|+|..+|--..+..+.+++....+.++|.-..++..+
T Consensus 337 ~~p~~~~~~~~g~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (676)
T TIGR02632 337 PNPRVLLIPGVGMISFGKDKETARVAREFYVNAINVMRGAEAVSEYVSLPEQE 389 (676)
T ss_pred CCCeEEEEcCcceEEecCCHHHhhhhHHHHHHHHHHHhhhhcccceecCchhh
Confidence 56789999999999999999999999999999999999999999887776665
No 124
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=41.94 E-value=1.4e+02 Score=29.23 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=31.5
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc-------cccCccchhhHHHHH
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS-------CRYGSQFCVYHLVVC 444 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~-------~~~~~~~~~~~~~~~ 444 (454)
..+.|.+..-++..+..|+++.+-||++. +|-+.-|=.+|.+||
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~ 141 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVL 141 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCee
Confidence 34566999999999999999999999843 233444444555555
No 125
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=41.91 E-value=27 Score=35.23 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=27.6
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+-++.|++.++|+..++.|++++|.|+|..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~ 148 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIG 148 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcH
Confidence 367899999999999999999999999985
No 126
>PRK10444 UMP phosphatase; Provisional
Probab=41.76 E-value=34 Score=33.65 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=24.5
Q ss_pred CeEEEEeeecccccccccccccchhhhhhhhhHHh
Q 012894 284 PRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLS 318 (454)
Q Consensus 284 ~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~ 318 (454)
|+.+++|++||+-.- +.++|.+.+.+...-+
T Consensus 1 ~~~v~~DlDGtL~~~----~~~~p~a~~~l~~L~~ 31 (248)
T PRK10444 1 IKNVICDIDGVLMHD----NVAVPGAAEFLHRILD 31 (248)
T ss_pred CcEEEEeCCCceEeC----CeeCccHHHHHHHHHH
Confidence 689999999999543 4689999988866544
No 127
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=41.73 E-value=25 Score=32.84 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=22.8
Q ss_pred hccccccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 393 GFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 393 gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
-..++.=+-.+||||...|+..+++|++|.|=|...
T Consensus 36 v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~ 71 (169)
T PF12689_consen 36 VVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTD 71 (169)
T ss_dssp EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S
T ss_pred EEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCC
Confidence 344555567899999999999999999999998654
No 128
>PLN02645 phosphoglycolate phosphatase
Probab=41.64 E-value=20 Score=36.29 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=39.9
Q ss_pred HHHHHHhccCchhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 369 VDAMIKADRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 369 v~~~~~~D~K~t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
+..|+++ ...-+=++.|-+|+.+ ++||.+.++|++.+++|+++++=|+.+
T Consensus 21 ~~~~~~~--~~~~~~D~DGtl~~~~--------~~~~ga~e~l~~lr~~g~~~~~~TN~~ 70 (311)
T PLN02645 21 ADELIDS--VETFIFDCDGVIWKGD--------KLIEGVPETLDMLRSMGKKLVFVTNNS 70 (311)
T ss_pred HHHHHHh--CCEEEEeCcCCeEeCC--------ccCcCHHHHHHHHHHCCCEEEEEeCCC
Confidence 3335553 2366669999999853 479999999999999999999999876
No 129
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=41.30 E-value=25 Score=32.22 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=24.4
Q ss_pred cCCCHHHHHHHHHHCCCeEEEecCCccccc
Q 012894 403 VFDDVPEALEKWHSLGTKVFSFSFSFSCRY 432 (454)
Q Consensus 403 ~y~Dv~~~l~~w~~~g~~lyiYSS~~~~~~ 432 (454)
++|.|+++|++++++|++|.|.|-=++-..
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~ 59 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGR 59 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCC
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCcccccc
Confidence 566899999999999999999997665555
No 130
>PRK06769 hypothetical protein; Validated
Probab=40.93 E-value=21 Score=32.85 Aligned_cols=28 Identities=7% Similarity=-0.073 Sum_probs=21.4
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.-+..|...-++.-++.|++..-.++|.
T Consensus 113 ~i~IGD~~~Di~aA~~aGi~~i~v~~g~ 140 (173)
T PRK06769 113 CAVIGDRWTDIVAAAKVNATTILVRTGA 140 (173)
T ss_pred eEEEcCCHHHHHHHHHCCCeEEEEecCC
Confidence 4456777888888889999877777665
No 131
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=40.64 E-value=28 Score=31.79 Aligned_cols=31 Identities=6% Similarity=-0.099 Sum_probs=26.8
Q ss_pred ccccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 398 ELEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 398 ~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
.....+||.+.++|++.. ++++++|||++.-
T Consensus 54 ~~~v~~rPgv~efL~~l~-~~yel~I~T~~~~ 84 (156)
T TIGR02250 54 WYLTKLRPFLHEFLKEAS-KLYEMHVYTMGTR 84 (156)
T ss_pred EEEEEECCCHHHHHHHHH-hhcEEEEEeCCcH
Confidence 467789999999999998 4599999999875
No 132
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=39.78 E-value=30 Score=31.59 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=25.3
Q ss_pred ccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 398 ELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 398 ~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.+--.+=|.+.++|+++.+. ..++|||||+
T Consensus 38 ~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~ 67 (162)
T TIGR02251 38 PVYVFKRPHVDEFLERVSKW-YELVIFTASL 67 (162)
T ss_pred EEEEEECCCHHHHHHHHHhc-CEEEEEcCCc
Confidence 44455669999999999887 9999999997
No 133
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=37.75 E-value=33 Score=37.79 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=25.2
Q ss_pred cCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 403 VFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 403 ~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+||+|++.|++++++|++|.|.|+-+.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 789999999999999999999999665
No 134
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=36.92 E-value=29 Score=31.80 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=24.4
Q ss_pred CCCeEEEEeeecccccccccccccchhhhhhhhhH
Q 012894 282 LFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKH 316 (454)
Q Consensus 282 ~~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~ 316 (454)
..+++|++|.+||.++-. ...+||.+++-|...
T Consensus 23 ~~v~~vv~D~Dgtl~~~~--~~~~~pgv~e~L~~L 55 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD--HNEAYPALRDWIEEL 55 (170)
T ss_pred CCCCEEEEecCCccccCC--CCCcChhHHHHHHHH
Confidence 578999999999998764 336788776655443
No 135
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=36.53 E-value=1.7e+02 Score=28.78 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=21.1
Q ss_pred EEEEeeecccccccccccccchhhhhhhhhHHhhccC
Q 012894 286 CIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSVTYD 322 (454)
Q Consensus 286 ~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~~~~~ 322 (454)
.+++|.++|++.-..-.-++==+..+.++.-|++.|.
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~ 38 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYP 38 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhcc
Confidence 4899999999876533322212233444455555554
No 136
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=35.90 E-value=19 Score=33.02 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=18.0
Q ss_pred cccccccccccccchhhhhhhhhHHhhc
Q 012894 293 GTTTPISFVSEVLFPYARDNVGKHLSVT 320 (454)
Q Consensus 293 GTt~~isFV~d~LFPYa~~~l~~~l~~~ 320 (454)
|+-||-- ||||+|+.+.+-.++-
T Consensus 98 ~i~CP~i-----LFPyaRe~Isd~v~~G 120 (149)
T PRK13031 98 KAFCPNI-----LYHYAREAISDLVISG 120 (149)
T ss_pred hcCCccc-----ccHHHHHHHHHHHhcC
Confidence 5667754 9999999998887553
No 137
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=35.57 E-value=1.1e+02 Score=30.22 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.2
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecC
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSF 426 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS 426 (454)
...++.|..--++.|+++|++..-.+.
T Consensus 271 ~~~~vgD~~~d~~~a~~~Gi~~i~v~~ 297 (300)
T PHA02530 271 VLLAVDDRDQVVDMWRRIGLECWQVAP 297 (300)
T ss_pred EEEEEcCcHHHHHHHHHhCCeEEEecC
Confidence 467899999999999999998654443
No 138
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=35.38 E-value=20 Score=30.99 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeE
Q 012894 380 TALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKV 421 (454)
Q Consensus 380 t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~l 421 (454)
++-|++|-.||+.| -.|---..+|.++.+.|+.-...|..|
T Consensus 31 ~aykeIqkYlw~~g-~t~~~~~~Il~~iLelfE~aaadgk~v 71 (111)
T COG4817 31 TAYKEIQKYLWKSG-PTGWNEMKILGNILELFEEAAADGKEV 71 (111)
T ss_pred HHHHHHHHHHHHcC-cchhHHHHHHHHHHHHHHHHHhccccH
Confidence 67899999999999 566666669999999999888877653
No 139
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=34.84 E-value=18 Score=36.49 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=19.5
Q ss_pred CCCCCeEEEEeeecccccccccccccchhhhh
Q 012894 280 SGLFPRCIVLDIEGTTTPISFVSEVLFPYARD 311 (454)
Q Consensus 280 ~~~~~~~illDIEGTt~~isFV~d~LFPYa~~ 311 (454)
....-++|++||=||||+|+.++|=...+..+
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~~~ 104 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPEISSE 104 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE-----
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeeecccc
Confidence 33445899999999999999999866544443
No 140
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=34.71 E-value=23 Score=35.53 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.4
Q ss_pred CCeEEEEeeeccccccc
Q 012894 283 FPRCIVLDIEGTTTPIS 299 (454)
Q Consensus 283 ~~~~illDIEGTt~~is 299 (454)
..+.+++|++||.++|.
T Consensus 17 ~~~~~~lDyDGTl~~i~ 33 (266)
T COG1877 17 RKRLLFLDYDGTLTEIV 33 (266)
T ss_pred cceEEEEeccccccccc
Confidence 45799999999999998
No 141
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=34.44 E-value=60 Score=31.93 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=20.3
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCccccc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFSCRY 432 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~~~ 432 (454)
.-+|-|-.-=+..-+++|++..-=..|+.+.|
T Consensus 187 ~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~~~ 218 (237)
T PRK11009 187 RIFYGDSDNDITAAREAGARGIRILRAANSTY 218 (237)
T ss_pred eEEEcCCHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 45678887777888888887433344444433
No 142
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=34.34 E-value=47 Score=34.74 Aligned_cols=30 Identities=20% Similarity=0.024 Sum_probs=27.2
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+..+||+|.++|++.+++|++++|-|+.+.
T Consensus 28 ~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g 57 (354)
T PRK05446 28 KLAFEPGVIPALLKLQKAGYKLVMVTNQDG 57 (354)
T ss_pred cceECcCHHHHHHHHHhCCCeEEEEECCcc
Confidence 378999999999999999999999999643
No 143
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=33.98 E-value=1.1e+02 Score=31.13 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHh--ccCchhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCcccccCccc
Q 012894 359 EEVIAALVANVDAMIKA--DRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSCRYGSQF 436 (454)
Q Consensus 359 ~~~~~~~~~~v~~~~~~--D~K~t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~~~~~~~ 436 (454)
++.++.+.+.+++..+- -.+.-+|-=..|-++.+-|+.|+++-+-.-.+.+.|++-++.+..|..+.+|..+.-|..-
T Consensus 185 ~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~~~~~~~~~d~~g~~~~rg~~n 264 (313)
T TIGR01210 185 KEAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKIGAEVLSDPVGAGSDRGAHN 264 (313)
T ss_pred hhhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCeEEecCCCCCCcCCCcC
Confidence 34455555555544432 2333455555577777778888887533337889999998888888889999999888777
Q ss_pred h--hhHHHHHHHHHHH
Q 012894 437 C--VYHLVVCAIMLFL 450 (454)
Q Consensus 437 ~--~~~~~~~~~~~~~ 450 (454)
| ....++-+|--|-
T Consensus 265 c~~c~~~~~~~~~~~~ 280 (313)
T TIGR01210 265 CGKCDKRVKEAIRKFS 280 (313)
T ss_pred cchhhHHHHHHHHHhc
Confidence 7 3566666665543
No 144
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=33.92 E-value=37 Score=33.39 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=26.8
Q ss_pred CCCeEEEEeeecccccccccccccchhhhhhhhhHHhh
Q 012894 282 LFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSV 319 (454)
Q Consensus 282 ~~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~~ 319 (454)
.++|.|.+||+||...-. ..++|.+++.+...-+.
T Consensus 2 ~~~kli~~DlDGTLl~~~---~~~~~~~~~ai~~l~~~ 36 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHH---TYSYEPAKPALKALKEK 36 (273)
T ss_pred CcceEEEEcCcccCcCCC---CcCcHHHHHHHHHHHHC
Confidence 579999999999998632 35778888887776543
No 145
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=33.56 E-value=37 Score=30.00 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=26.7
Q ss_pred CC-CHHHHHHHHHHCCCeEEEecCCcccccCccchhh
Q 012894 404 FD-DVPEALEKWHSLGTKVFSFSFSFSCRYGSQFCVY 439 (454)
Q Consensus 404 y~-Dv~~~l~~w~~~g~~lyiYSS~~~~~~~~~~~~~ 439 (454)
+| .+.++++....+|+++.+|.||.....+..||.-
T Consensus 66 ~p~~~~~fl~~l~~~~k~~avfgtgd~~~~~~~f~~a 102 (140)
T TIGR01754 66 TPDEMKDFIAELGYKPSNVAIFGTGETQWGDDLYCGA 102 (140)
T ss_pred CCHHHHHHHHHhcccCCEEEEEEcCCCCcCcchHhHH
Confidence 45 4667777766689999999999665555689863
No 146
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=32.96 E-value=27 Score=31.21 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=14.1
Q ss_pred eEEEEeeecccccccccc
Q 012894 285 RCIVLDIEGTTTPISFVS 302 (454)
Q Consensus 285 ~~illDIEGTt~~isFV~ 302 (454)
|+++||++||....+.-.
T Consensus 1 k~LVlDLD~TLv~~~~~~ 18 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKS 18 (159)
T ss_dssp EEEEEE-CTTTEEEESST
T ss_pred CEEEEeCCCcEEEEeecC
Confidence 579999999998877654
No 147
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=32.62 E-value=43 Score=32.95 Aligned_cols=31 Identities=3% Similarity=-0.059 Sum_probs=27.3
Q ss_pred ccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 398 ELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 398 ~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
+..+.+||++.+.|+.++++|.+|++-|+-+
T Consensus 110 ~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~ 140 (237)
T PRK11009 110 DEFSIPKEVARQLIDMHVKRGDSIYFITGRT 140 (237)
T ss_pred cccCcchHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4558899999999999999999999999754
No 148
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=31.65 E-value=39 Score=32.79 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=22.3
Q ss_pred CeEEEEeeecccccccccc--cccchhhhhhhhhHH
Q 012894 284 PRCIVLDIEGTTTPISFVS--EVLFPYARDNVGKHL 317 (454)
Q Consensus 284 ~~~illDIEGTt~~isFV~--d~LFPYa~~~l~~~l 317 (454)
-++++||++||.+|+.--- ..+-|..++.|.+..
T Consensus 3 ~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~ 38 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLA 38 (244)
T ss_pred cEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHH
Confidence 3689999999999974211 124555666665554
No 149
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=29.77 E-value=29 Score=37.94 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.3
Q ss_pred CeEEEEeeecccccccccccccchhhhh
Q 012894 284 PRCIVLDIEGTTTPISFVSEVLFPYARD 311 (454)
Q Consensus 284 ~~~illDIEGTt~~isFV~d~LFPYa~~ 311 (454)
-+.+++|+|||++. +|.+|||+.-
T Consensus 22 ~~~~~FDfDGTLt~----~~s~f~~Fll 45 (497)
T PLN02177 22 NQTVAADLDGTLLI----SRSAFPYYLL 45 (497)
T ss_pred ccEEEEecCCcccC----CCCccHHHHH
Confidence 45799999999997 5668996654
No 150
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=29.62 E-value=59 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=20.4
Q ss_pred CeEEEEcCC-ceEEecCCHHHHHHHHHH
Q 012894 200 ATAVLVRNH-GIYVWGDSWINAKTQAEC 226 (454)
Q Consensus 200 ~~aVLL~nH-Gvlv~G~sl~eA~~~~e~ 226 (454)
.-.+-.... |+.+.|+|++||+..+..
T Consensus 13 ~y~~~~pdlpg~~t~G~t~eea~~~~~e 40 (48)
T PF03681_consen 13 GYVAYFPDLPGCFTQGDTLEEALENAKE 40 (48)
T ss_dssp SEEEEETTCCTCEEEESSHHHHHHHHHH
T ss_pred eEEEEeCCccChhhcCCCHHHHHHHHHH
Confidence 445555565 999999999999976543
No 151
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=29.55 E-value=48 Score=33.24 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCeEEEEeeeccccccccc--ccc--cchhhhhhhhhHHhhccCChhh---HHHHHHHH
Q 012894 283 FPRCIVLDIEGTTTPISFV--SEV--LFPYARDNVGKHLSVTYDTAET---QDDIKLLR 334 (454)
Q Consensus 283 ~~~~illDIEGTt~~isFV--~d~--LFPYa~~~l~~~l~~~~~~~~~---~~~i~~~~ 334 (454)
...+|++||++|+-+-+-- +.. =+||..+.-.+|... ...+.+ .+.++.++
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~-~~a~~ipGA~e~L~~L~ 131 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQA-AQAKPVAGALDFLNYAN 131 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHc-CCCCcCccHHHHHHHHH
Confidence 3579999999999877622 112 267777777777755 343333 34444443
No 152
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.94 E-value=68 Score=31.11 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.2
Q ss_pred cccccccCCCHHHHHHHHHHCCCeEEEecCCcccc
Q 012894 397 NELEGEVFDDVPEALEKWHSLGTKVFSFSFSFSCR 431 (454)
Q Consensus 397 G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~~ 431 (454)
-+=+.++-|.+.+...+.++.|.+||+-|-|+.+-
T Consensus 83 ~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~ 117 (227)
T KOG1615|consen 83 IKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQL 117 (227)
T ss_pred hcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHH
Confidence 33478899999999999999999999999999764
No 153
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=28.69 E-value=48 Score=28.91 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.8
Q ss_pred eEEEEeeeccccccc
Q 012894 285 RCIVLDIEGTTTPIS 299 (454)
Q Consensus 285 ~~illDIEGTt~~is 299 (454)
|.+++|++||..+--
T Consensus 1 kli~~DlD~Tl~~~~ 15 (128)
T TIGR01681 1 KVIVFDLDNTLWTGE 15 (128)
T ss_pred CEEEEeCCCCCCCCC
Confidence 578999999999774
No 154
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=27.94 E-value=52 Score=33.70 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 405 DDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 405 ~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
|+|.++|++.+++|+++.|-|||+-.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re 174 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRD 174 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 88999999999999999999998643
No 155
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=27.54 E-value=41 Score=34.13 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=26.0
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
++.||++.+.|++++++|++++|-|+...
T Consensus 30 ~~~~~~~~e~L~~L~~~Gi~lai~S~n~~ 58 (320)
T TIGR01686 30 SPLHKTLQEKIKTLKKQGFLLALASKNDE 58 (320)
T ss_pred CccHHHHHHHHHHHHhCCCEEEEEcCCCH
Confidence 34699999999999999999999999864
No 156
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=26.74 E-value=1.7e+02 Score=26.76 Aligned_cols=52 Identities=29% Similarity=0.419 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhHHhhhcccCCcccCCCCCCChHHHHHHHHHHHHHHHHhccC-------------chhHHHHHHHH
Q 012894 326 TQDDIKLLRSQVEDDLKQGVAGAVPIPPGDAGKEEVIAALVANVDAMIKADRK-------------ITALKQLQGHI 389 (454)
Q Consensus 326 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~K-------------~t~LK~LQG~i 389 (454)
..+.|+.||.-.+ .+.++....+.++.+.+-+++||++-|. -++|.+|.||-
T Consensus 53 t~~vv~~lr~~l~------------l~~d~~~~~~~~~~ar~~in~~vs~YRr~~~v~g~~Sf~~m~tAln~LaghY 117 (145)
T PF13326_consen 53 TRAVVKTLREALE------------LDKDDPNRAEAAAEARELINDYVSRYRRGPSVSGLPSFTTMYTALNALAGHY 117 (145)
T ss_dssp HHHHHHHHHHHHC------------S-TT-TTHHHHHHHHHHHHHHHHCCCCCCHHCCTSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc------------CCCCCccHHHHHHHHHHHHHHHHHHhCCCCCcCCcchHHHHHHHHHHHHHHH
Confidence 4667777776421 2344556777788888889999988877 35788999983
No 157
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=26.34 E-value=34 Score=31.77 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=14.1
Q ss_pred CCeEEEEeeecccccc
Q 012894 283 FPRCIVLDIEGTTTPI 298 (454)
Q Consensus 283 ~~~~illDIEGTt~~i 298 (454)
.+|.|++||+||.+.-
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 5999999999998863
No 158
>PRK09271 flavodoxin; Provisional
Probab=26.25 E-value=74 Score=28.83 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=26.9
Q ss_pred ccCCC-HHHHHHHHHH---CCCeEEEecCCcccccCccchh
Q 012894 402 EVFDD-VPEALEKWHS---LGTKVFSFSFSFSCRYGSQFCV 438 (454)
Q Consensus 402 ~~y~D-v~~~l~~w~~---~g~~lyiYSS~~~~~~~~~~~~ 438 (454)
-.+|+ +.++++.... +|+++.||.||...-.|..||.
T Consensus 65 G~~p~~~~~f~~~l~~~~~~~k~~avfgsgd~~~~~~~f~~ 105 (160)
T PRK09271 65 GRTPPEMKRFIAELAETIGKPPNVAVFGTGETQWGEEYYCG 105 (160)
T ss_pred CcCCHHHHHHHHHHHHHhccCCeEEEEecCCCCcCccHHHH
Confidence 45675 8888877766 6889999999954333357886
No 159
>PLN02704 flavonol synthase
Probab=26.02 E-value=92 Score=32.03 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=28.2
Q ss_pred ceeeeeCC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceE
Q 012894 173 VVPIIENT-AYENELTDSLAKAIDAYPKATAVLVRNHGIY 211 (454)
Q Consensus 173 ~VPiv~~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvl 211 (454)
.||+++.. +...++++++.+++++ .-.+.+.|||+=
T Consensus 42 ~iPvIDls~~~~~~~~~~l~~Ac~~---~GFf~l~nHGI~ 78 (335)
T PLN02704 42 QVPTIDLSDPDEEKLTRLIAEASKE---WGMFQIVNHGIP 78 (335)
T ss_pred CCCeEECCCccHHHHHHHHHHHHHH---cCEEEEEcCCCC
Confidence 49999975 4445678888889886 678889999984
No 160
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=25.85 E-value=40 Score=31.79 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCeEEEEeeecccccccccccccchhhhhhhhhH
Q 012894 283 FPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKH 316 (454)
Q Consensus 283 ~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~ 316 (454)
++|.|.+|++||+..-. ..+=|...+.|.++
T Consensus 2 ~~kli~~DlDGTLl~~~---~~i~~~~~~al~~l 32 (230)
T PRK01158 2 KIKAIAIDIDGTITDKD---RRLSLKAVEAIRKA 32 (230)
T ss_pred ceeEEEEecCCCcCCCC---CccCHHHHHHHHHH
Confidence 57999999999998521 22445666666554
No 161
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=25.82 E-value=31 Score=31.96 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=11.2
Q ss_pred EEEEeeeccccccc
Q 012894 286 CIVLDIEGTTTPIS 299 (454)
Q Consensus 286 ~illDIEGTt~~is 299 (454)
+|+.||+||+|-=-
T Consensus 1 VVvsDIDGTiT~SD 14 (157)
T PF08235_consen 1 VVVSDIDGTITKSD 14 (157)
T ss_pred CEEEeccCCcCccc
Confidence 47899999998643
No 162
>PLN02580 trehalose-phosphatase
Probab=25.54 E-value=37 Score=35.90 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=13.7
Q ss_pred eEEEEeeeccccccc
Q 012894 285 RCIVLDIEGTTTPIS 299 (454)
Q Consensus 285 ~~illDIEGTt~~is 299 (454)
.+++||++||.+||.
T Consensus 120 ~~LfLDyDGTLaPIv 134 (384)
T PLN02580 120 IALFLDYDGTLSPIV 134 (384)
T ss_pred eEEEEecCCccCCCC
Confidence 589999999999986
No 163
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=25.49 E-value=80 Score=31.02 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=24.7
Q ss_pred ccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 402 EVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 402 ~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
+++|.+.++|++++++|+++++-|-.|.-
T Consensus 21 ~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 21 VAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 48999999999999999999888754443
No 164
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=25.47 E-value=56 Score=28.97 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=12.4
Q ss_pred eEEEEeeeccccccc
Q 012894 285 RCIVLDIEGTTTPIS 299 (454)
Q Consensus 285 ~~illDIEGTt~~is 299 (454)
+++++|++||.+.-.
T Consensus 1 ~~~~~d~dgtl~~~~ 15 (147)
T TIGR01656 1 PALFLDRDGVINEDT 15 (147)
T ss_pred CeEEEeCCCceeccC
Confidence 478999999987655
No 165
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=25.19 E-value=99 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHhhhhcccccc--ccccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 386 QGHIWRTGFESNEL--EGEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 386 QG~iW~~gy~~G~l--~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
...+|+. |.+..+ .-+.+|++.++|++|.+.|..+++-||....
T Consensus 56 ~~~~~~~-~~~~~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 56 YEKLWRF-YEEPGFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp HHHHHHH-HTSTTTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred HHHHHHH-HhChhhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 3455555 444333 4578999999999999999877777765544
No 166
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=24.93 E-value=70 Score=31.39 Aligned_cols=35 Identities=20% Similarity=0.043 Sum_probs=25.8
Q ss_pred CCCCCeEEEEeeecccccccccccccchhhhhhhhhHH
Q 012894 280 SGLFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHL 317 (454)
Q Consensus 280 ~~~~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l 317 (454)
++..++.|.+|++||+..- +..+.|...+.+.+.-
T Consensus 3 ~~~~~~lI~~DlDGTLL~~---~~~i~~~~~~ai~~l~ 37 (271)
T PRK03669 3 SLQDPLLIFTDLDGTLLDS---HTYDWQPAAPWLTRLR 37 (271)
T ss_pred CcCCCeEEEEeCccCCcCC---CCcCcHHHHHHHHHHH
Confidence 5678999999999999852 3345577777776644
No 167
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=24.04 E-value=70 Score=32.80 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 404 FDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 404 y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
=|++.++|++.+++|+++.|-|||+-
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~R 175 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNR 175 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCCh
Confidence 37899999999999999999999854
No 168
>COG3347 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=1.5e+02 Score=31.34 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 012894 198 PKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLHQLGLDWSTPNHG 250 (454)
Q Consensus 198 p~~~aVLL~nHGvlv~G~sl~eA~~~~e~LE~~A~i~l~A~~~G~~~~~~~~~ 250 (454)
|..+++|+..-|+++.|+|...|--.-+.++.+....=.|..+|.-..++..+
T Consensus 336 p~P~viLipG~Gm~~~g~~~a~A~i~~d~~~~ai~v~~gA~~~g~~~~l~e~e 388 (404)
T COG3347 336 PAPRVILIPGLGMLTAGKSAAGARIMGDLYEDAIAVVRGAEALGYYTPLSEAE 388 (404)
T ss_pred CCCcEEEecCCceeeeccchhhHHHHHHHHHHHHHHhhhhhhhcccccCchhh
Confidence 44789999999999999999999999999999999988899999877766654
No 169
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=23.90 E-value=39 Score=30.31 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=25.0
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCcccccCccchhh
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFSCRYGSQFCVY 439 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~~~~~~~~~~ 439 (454)
|.+-+.|.++|+.-......+.|..||.. .+|.+||--
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr-~~g~~f~~a 93 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNR-NFGDAFALA 93 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCc-hHHHHHHHH
Confidence 44444455555443334567999999987 788889853
No 170
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=23.63 E-value=82 Score=31.16 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=21.0
Q ss_pred eEEEEeeeccccccccc--ccccchhhhhhhhhHH
Q 012894 285 RCIVLDIEGTTTPISFV--SEVLFPYARDNVGKHL 317 (454)
Q Consensus 285 ~~illDIEGTt~~isFV--~d~LFPYa~~~l~~~l 317 (454)
..|++|++||..|+.=- +-.+-|..++.|....
T Consensus 15 ~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~ 49 (266)
T PRK10187 15 YAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLA 49 (266)
T ss_pred EEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHH
Confidence 58999999999986211 1134466666655543
No 171
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=23.59 E-value=60 Score=31.02 Aligned_cols=37 Identities=22% Similarity=0.039 Sum_probs=26.8
Q ss_pred CCCeEEEEeeecccccc-cccccccchhhhhhhhhHHhh
Q 012894 282 LFPRCIVLDIEGTTTPI-SFVSEVLFPYARDNVGKHLSV 319 (454)
Q Consensus 282 ~~~~~illDIEGTt~~i-sFV~d~LFPYa~~~l~~~l~~ 319 (454)
+.-+.++||+++|.-.. +... +-+.|.|-.+++||+.
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~-~~~~~kRP~l~eFL~~ 56 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAE-TGEELMRPYLHEFLTS 56 (195)
T ss_pred CCCcEEEEeCCCceEcccccCC-CceEEeCCCHHHHHHH
Confidence 45589999999999753 4333 3345888888888855
No 172
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=23.53 E-value=79 Score=31.30 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=27.5
Q ss_pred cccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 399 LEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 399 l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+...+||++...|++++++|+++.|=|+.+.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~ 214 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDG 214 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCCh
Confidence 5667899999999999999999999887754
No 173
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=23.51 E-value=56 Score=31.55 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCCeEEEEeeecccccccccccccchhhhhhhhhHHh
Q 012894 282 LFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLS 318 (454)
Q Consensus 282 ~~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~ 318 (454)
.+++.+++|++||... ...+||.+.+-|...-+
T Consensus 6 ~~~~~~~~D~dG~l~~----~~~~~pga~e~L~~L~~ 38 (242)
T TIGR01459 6 NDYDVFLLDLWGVIID----GNHTYPGAVQNLNKIIA 38 (242)
T ss_pred hcCCEEEEeccccccc----CCccCccHHHHHHHHHH
Confidence 4688999999999964 34689999988877543
No 174
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=23.49 E-value=67 Score=31.33 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=26.3
Q ss_pred CCeEEEEeeecccccccccccccchhhhhhhhhHHhh
Q 012894 283 FPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSV 319 (454)
Q Consensus 283 ~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~l~~ 319 (454)
++|.|.+|++||+..- ...+-|..++.+.++-+.
T Consensus 1 m~kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~ 34 (272)
T PRK15126 1 MARLAAFDMDGTLLMP---DHHLGEKTLSTLARLRER 34 (272)
T ss_pred CccEEEEeCCCcCcCC---CCcCCHHHHHHHHHHHHC
Confidence 4789999999999863 245888888888886543
No 175
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=23.42 E-value=68 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=24.9
Q ss_pred cccCCCHHHHHHHHHHCCCeEEEecCCccc
Q 012894 401 GEVFDDVPEALEKWHSLGTKVFSFSFSFSC 430 (454)
Q Consensus 401 ~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~~ 430 (454)
..+.+++.++|++|+++|..+++.|+=+..
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 567789999999999999999888765443
No 176
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=23.38 E-value=32 Score=29.68 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeE
Q 012894 380 TALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKV 421 (454)
Q Consensus 380 t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~l 421 (454)
.+.+++|-+||..|=-+|.-.-+++.|+...|++..+.|.+|
T Consensus 26 ~ay~~i~~Yl~~~~~~~g~~~~~il~dildlfEe~aadG~~V 67 (103)
T PF06304_consen 26 IAYKAIQKYLWYFGPTDGRDMMEILSDILDLFEEAAADGKSV 67 (103)
T ss_dssp HHHHHHHHHHHHHTBSSHHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 567899999999885557666789999999999999988764
No 177
>PLN03017 trehalose-phosphatase
Probab=23.37 E-value=43 Score=35.24 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.3
Q ss_pred eEEEEeeeccccccc
Q 012894 285 RCIVLDIEGTTTPIS 299 (454)
Q Consensus 285 ~~illDIEGTt~~is 299 (454)
.+|.+|++||.+||.
T Consensus 112 ~llflD~DGTL~Piv 126 (366)
T PLN03017 112 IVMFLDYDGTLSPIV 126 (366)
T ss_pred eEEEEecCCcCcCCc
Confidence 588999999999876
No 178
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=23.13 E-value=70 Score=23.48 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHC
Q 012894 380 TALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSL 417 (454)
Q Consensus 380 t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~ 417 (454)
+..+.+|-.+-+-||-.|...+..=++...+++++.+.
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~ 40 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKA 40 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 45788999999999999999988889999999999863
No 179
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=22.92 E-value=37 Score=32.66 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=7.9
Q ss_pred EEeeeccccccccc
Q 012894 288 VLDIEGTTTPISFV 301 (454)
Q Consensus 288 llDIEGTt~~isFV 301 (454)
+||++||.+||.=-
T Consensus 1 ~lDyDGTL~p~~~~ 14 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD 14 (235)
T ss_dssp EEE-TTTSS---S-
T ss_pred CcccCCccCCCCCC
Confidence 58999999999853
No 180
>PRK10444 UMP phosphatase; Provisional
Probab=22.91 E-value=56 Score=32.10 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=31.5
Q ss_pred HHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 384 QLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 384 ~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
++.|-+|..+ +++|.+.++|++++++|+++++-|..+.
T Consensus 7 DlDGtL~~~~--------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~ 44 (248)
T PRK10444 7 DIDGVLMHDN--------VAVPGAAEFLHRILDKGLPLVLLTNYPS 44 (248)
T ss_pred eCCCceEeCC--------eeCccHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4567777753 5699999999999999999998887765
No 181
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=22.61 E-value=73 Score=29.58 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=9.8
Q ss_pred EEEeeeccccc
Q 012894 287 IVLDIEGTTTP 297 (454)
Q Consensus 287 illDIEGTt~~ 297 (454)
|++||+||..+
T Consensus 1 i~~DlDGTLl~ 11 (254)
T PF08282_consen 1 IFSDLDGTLLN 11 (254)
T ss_dssp EEEECCTTTCS
T ss_pred cEEEECCceec
Confidence 68999999977
No 182
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=22.61 E-value=39 Score=31.25 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=16.8
Q ss_pred cccccccccccccchhhhhhhhhHHhh
Q 012894 293 GTTTPISFVSEVLFPYARDNVGKHLSV 319 (454)
Q Consensus 293 GTt~~isFV~d~LFPYa~~~l~~~l~~ 319 (454)
|+=||= .||||+|+.+.+....
T Consensus 101 ~i~CP~-----iLFPYaR~~Is~~t~~ 122 (157)
T COG1952 101 GIECPN-----ILFPYARELISDLTAR 122 (157)
T ss_pred hccCch-----hhhHHHHHHHHHHhhc
Confidence 455664 4999999999888744
No 183
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=22.48 E-value=1.6e+02 Score=34.57 Aligned_cols=17 Identities=41% Similarity=0.659 Sum_probs=15.4
Q ss_pred CCeEEEEeeeccccccc
Q 012894 283 FPRCIVLDIEGTTTPIS 299 (454)
Q Consensus 283 ~~~~illDIEGTt~~is 299 (454)
+.+.|+||++||..|+.
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 56999999999999986
No 184
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=22.47 E-value=86 Score=25.29 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhhhccccccccccCCCHHHHHHHHHH
Q 012894 381 ALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHS 416 (454)
Q Consensus 381 ~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~ 416 (454)
-.+++|..+=+-||-.|+..|..=+.+..||+.|..
T Consensus 17 ~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~~~g 52 (74)
T PF08823_consen 17 VAREVQEALKRLGYYKGEADGVWDEATEDALRAWAG 52 (74)
T ss_pred HHHHHHHHHHHcCCccCCCCCcccHHHHHHHHHHHH
Confidence 456788888899999999999998888999999974
No 185
>TIGR00809 secB protein-export chaperone SecB. The archaeal Methanococcus jannaschii homolog MJ0357 has been shown (PubMed:14985117) to share many properties, including chaperone-like activity, and scores between trusted and noise.
Probab=22.39 E-value=42 Score=30.54 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=17.0
Q ss_pred cccccccccccccchhhhhhhhhHHhhc
Q 012894 293 GTTTPISFVSEVLFPYARDNVGKHLSVT 320 (454)
Q Consensus 293 GTt~~isFV~d~LFPYa~~~l~~~l~~~ 320 (454)
|.-||-- ||||+|+.+.+-..+-
T Consensus 95 ~i~cP~i-----LFPyaRe~Vsdl~~~g 117 (140)
T TIGR00809 95 GVHCPNM-----LFPYAREIISSCVQRG 117 (140)
T ss_pred hcCCchh-----hhHHHHHHHHHHHhhC
Confidence 4556644 9999999988887553
No 186
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=22.28 E-value=1.5e+02 Score=28.10 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=34.9
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc----cccCccchhhHHHHHH
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS----CRYGSQFCVYHLVVCA 445 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~----~~~~~~~~~~~~~~~~ 445 (454)
+=.+.|+++|+|+.+.+.|+++-|.|==|+ ..-+.+|-.+|..+-.
T Consensus 29 ~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~ 78 (181)
T COG0241 29 DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLK 78 (181)
T ss_pred HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHH
Confidence 335789999999999999999999997443 3445577777766543
No 187
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=22.09 E-value=1.1e+02 Score=30.67 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=33.0
Q ss_pred HHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 388 HIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 388 ~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
.-|.+....+ .+..+|.+.++|+..+++|++++|-|+-+
T Consensus 106 ~~w~~wv~~~--~a~~ipGA~e~L~~L~~~G~~v~iVTnR~ 144 (266)
T TIGR01533 106 ETWDKWVQAA--QAKPVAGALDFLNYANSKGVKIFYVSNRS 144 (266)
T ss_pred HHHHHHHHcC--CCCcCccHHHHHHHHHHCCCeEEEEeCCC
Confidence 3677777665 56689999999999999999999998875
No 188
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.08 E-value=81 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHCCCeEEEecCC
Q 012894 405 DDVPEALEKWHSLGTKVFSFSFS 427 (454)
Q Consensus 405 ~Dv~~~l~~w~~~g~~lyiYSS~ 427 (454)
-|-.|++++.++.|++|.++++.
T Consensus 110 ~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 110 SDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred ccHHHHHHHHHHcCCEEEEEccC
Confidence 39999999999999999999997
No 189
>PLN00064 photosystem II protein Psb27; Provisional
Probab=21.87 E-value=2.9e+02 Score=25.85 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=28.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccC-------------chhHHHHHHH
Q 012894 351 IPPGDAGKEEVIAALVANVDAMIKADRK-------------ITALKQLQGH 388 (454)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~v~~~~~~D~K-------------~t~LK~LQG~ 388 (454)
.+.++..+++.+..+.+.+++||++=|. -|+|-+|-||
T Consensus 83 L~~ddp~~a~a~aeaR~~iNdyvSrYRr~~~v~Gl~SFttMyTALNaLAGH 133 (166)
T PLN00064 83 MDKTDPNVADAVAELRETSNSWVAKYRREKALLGRPSFRDMYSALNAVSGH 133 (166)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHHHHHHHHHHHH
Confidence 3445566777788888888899987665 3678899998
No 190
>PLN02151 trehalose-phosphatase
Probab=21.82 E-value=48 Score=34.72 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.5
Q ss_pred eEEEEeeeccccccc
Q 012894 285 RCIVLDIEGTTTPIS 299 (454)
Q Consensus 285 ~~illDIEGTt~~is 299 (454)
.+++||++||.+||.
T Consensus 99 ~ll~lDyDGTL~PIv 113 (354)
T PLN02151 99 IVMFLDYDGTLSPIV 113 (354)
T ss_pred eEEEEecCccCCCCC
Confidence 589999999999886
No 191
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=21.50 E-value=48 Score=33.32 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=36.0
Q ss_pred ccCchhHHHHHHHHhhhhccccccccccCCCHHHHHHHHHHCCCeEEEecCCc
Q 012894 376 DRKITALKQLQGHIWRTGFESNELEGEVFDDVPEALEKWHSLGTKVFSFSFSF 428 (454)
Q Consensus 376 D~K~t~LK~LQG~iW~~gy~~G~l~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~ 428 (454)
+++.+.|=+|.|-||+. ...||++.++|++++++|++++.-|=+|
T Consensus 6 ~~y~~~l~DlDGvl~~G--------~~~ipga~e~l~~L~~~g~~~iflTNn~ 50 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG--------NEAIPGAAEALKRLKAAGKPVIFLTNNS 50 (269)
T ss_pred hhcCEEEEcCcCceEeC--------CccCchHHHHHHHHHHcCCeEEEEeCCC
Confidence 45567788889999943 4689999999999999999977766443
No 192
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=20.66 E-value=48 Score=34.16 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.2
Q ss_pred CCeEEEEeeecccccccccccc
Q 012894 283 FPRCIVLDIEGTTTPISFVSEV 304 (454)
Q Consensus 283 ~~~~illDIEGTt~~isFV~d~ 304 (454)
..++|.+||=||||.|+.|++=
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCCEEEEEcCccceeeEEecCC
Confidence 4469999999999999999873
No 193
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.62 E-value=1e+02 Score=31.63 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=28.2
Q ss_pred ceeeeeCC-CCcHHHHHHHHHHHhcCCCCeEEEEcCCceE
Q 012894 173 VVPIIENT-AYENELTDSLAKAIDAYPKATAVLVRNHGIY 211 (454)
Q Consensus 173 ~VPiv~~~-p~~~ela~~ia~~L~~~p~~~aVLL~nHGvl 211 (454)
.||+++.. +...++++++.+++++ .-++.+.|||+-
T Consensus 37 ~iPvIDls~~~~~~~~~~l~~Ac~~---~GFf~v~nHGI~ 73 (337)
T PLN02639 37 NVPVIDLGSPDRAQVVQQIGDACRR---YGFFQVINHGVS 73 (337)
T ss_pred CCCeEECCCccHHHHHHHHHHHHHh---CCEEEEEcCCCC
Confidence 48999975 3455688899999986 578889999983
No 194
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=20.61 E-value=56 Score=31.68 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCeEEEEeeecccccccccccccchhhhhhhhhH
Q 012894 282 LFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKH 316 (454)
Q Consensus 282 ~~~~~illDIEGTt~~isFV~d~LFPYa~~~l~~~ 316 (454)
++++.|.+||+||...=.-- +-|...+.|...
T Consensus 1 ~~~kli~~DlDGTLl~~~~~---i~~~~~~al~~~ 32 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKT---ISPETKEALARL 32 (264)
T ss_pred CCeeEEEEcCCCCccCCCCc---cCHHHHHHHHHH
Confidence 46899999999999875522 556666666533
No 195
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=20.52 E-value=81 Score=34.85 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=26.9
Q ss_pred ccccCCCHHHHHHHHHHCCCeEEEecCCcc
Q 012894 400 EGEVFDDVPEALEKWHSLGTKVFSFSFSFS 429 (454)
Q Consensus 400 ~~~~y~Dv~~~l~~w~~~g~~lyiYSS~~~ 429 (454)
+-++|||+.+.|++++++|++++|=|+...
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~ 432 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNR 432 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCH
Confidence 667899999999999999999999988754
No 196
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=20.10 E-value=60 Score=30.14 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.6
Q ss_pred CCCeEEEEeeecccccccc
Q 012894 282 LFPRCIVLDIEGTTTPISF 300 (454)
Q Consensus 282 ~~~~~illDIEGTt~~isF 300 (454)
..+|++++||+|+.|+-+.
T Consensus 5 ~~i~~~v~d~dGv~tdg~~ 23 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGRI 23 (169)
T ss_pred ccCeEEEEeCceeeECCeE
Confidence 4599999999999999874
Done!