BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012895
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 280 bits (717), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 165/393 (41%), Positives = 217/393 (55%), Gaps = 27/393 (6%)
Query: 54 PQQVHIS---LAAKDYIRVSWITDDKEAESVVEYGKLPGRYNTVATGEHTSYQFFFYKSG 110
PQQVHI+ L + I +SW+T D+ S V Y +A G+ ++Y+FF Y SG
Sbjct: 21 PQQVHITQGDLVGRAMI-ISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSG 79
Query: 111 KIHHVKIGPLEPATTYYYRCGGRGP--EFSFKMPPA---NFPIEFAIVGDLGQTEWTNST 165
IHH I L+ T YYY G R FSF PP + P F ++GDLGQ+ +N+T
Sbjct: 80 FIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTT 139
Query: 166 LDH--VGSKDYDVFLLPGDLSYAD----FQQPLWDSFGRLVEPYASSRPWMVTEGNHEIE 219
L H + K L GDLSYAD WD++GR E + +PW+ T GNHEIE
Sbjct: 140 LSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIE 199
Query: 220 SIP-IILPHAFKAYNARWLMPYEESGSSSNLYYSFDIAGAHIIMLGSYTDFDEDSAQYKW 278
P I FK ++ R+ +PYE S S+S +YS A AHII+L SY+ + + QY W
Sbjct: 200 FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTW 259
Query: 279 LKADLAKINRKKTPWIFVLLHAPWYNTNTAHQGEGESMRNSMEELLYNARVDVVFAGHVH 338
LK +L K+ R +TPW+ VL+H+P YN+ H EGE+MR E +VDVVFAGHVH
Sbjct: 260 LKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVH 319
Query: 339 AYERFTRIYDNK-----------ADPCGPIYITIGDGGNREGLALEFKEPKSPLSMFQES 387
AYER R+ + D P+YITIGD GN + +P+ S F+E+
Sbjct: 320 AYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREA 379
Query: 388 SFGHARLKILDETRAHWSWYRNNDSDAVIADEV 420
SFGH I + T AH+SW RN D AV AD V
Sbjct: 380 SFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSV 412
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/393 (41%), Positives = 217/393 (55%), Gaps = 27/393 (6%)
Query: 54 PQQVHIS---LAAKDYIRVSWITDDKEAESVVEYGKLPGRYNTVATGEHTSYQFFFYKSG 110
PQQVHI+ L + I +SW+T D+ S V Y +A G+ ++Y+FF Y SG
Sbjct: 27 PQQVHITQGDLVGRAMI-ISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSG 85
Query: 111 KIHHVKIGPLEPATTYYYRCGGRGP--EFSFKMPPA---NFPIEFAIVGDLGQTEWTNST 165
IHH I L+ T YYY G R FSF PP + P F ++GDLGQ+ +N+T
Sbjct: 86 FIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTT 145
Query: 166 LDH--VGSKDYDVFLLPGDLSYAD----FQQPLWDSFGRLVEPYASSRPWMVTEGNHEIE 219
L H + K L GDLSYAD WD++GR E + +PW+ T GNHEIE
Sbjct: 146 LSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIE 205
Query: 220 SIP-IILPHAFKAYNARWLMPYEESGSSSNLYYSFDIAGAHIIMLGSYTDFDEDSAQYKW 278
P I FK ++ R+ +PYE S S+S +YS A AHII+L SY+ + + QY W
Sbjct: 206 FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTW 265
Query: 279 LKADLAKINRKKTPWIFVLLHAPWYNTNTAHQGEGESMRNSMEELLYNARVDVVFAGHVH 338
LK +L K+ R +TPW+ VL+H+P YN+ H EGE+MR E +VDVVFAGHVH
Sbjct: 266 LKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVH 325
Query: 339 AYERFTRIYDNK-----------ADPCGPIYITIGDGGNREGLALEFKEPKSPLSMFQES 387
AYER R+ + D P+YITIGD GN + +P+ S F+E+
Sbjct: 326 AYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREA 385
Query: 388 SFGHARLKILDETRAHWSWYRNNDSDAVIADEV 420
SFGH I + T AH+SW RN D AV AD V
Sbjct: 386 SFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSV 418
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/393 (41%), Positives = 217/393 (55%), Gaps = 27/393 (6%)
Query: 54 PQQVHIS---LAAKDYIRVSWITDDKEAESVVEYGKLPGRYNTVATGEHTSYQFFFYKSG 110
PQQVHI+ L + I +SW+T D+ S V Y +A G+ ++Y+FF Y SG
Sbjct: 19 PQQVHITQGDLVGRAMI-ISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSG 77
Query: 111 KIHHVKIGPLEPATTYYYRCGGRGP--EFSFKMPPA---NFPIEFAIVGDLGQTEWTNST 165
IHH I L+ T YYY G R FSF PP + P F ++GDLGQ+ +N+T
Sbjct: 78 FIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTT 137
Query: 166 LDH--VGSKDYDVFLLPGDLSYAD----FQQPLWDSFGRLVEPYASSRPWMVTEGNHEIE 219
L H + K L GDLSYAD WD++GR E + +PW+ T GNHEIE
Sbjct: 138 LSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIE 197
Query: 220 SIP-IILPHAFKAYNARWLMPYEESGSSSNLYYSFDIAGAHIIMLGSYTDFDEDSAQYKW 278
P I FK ++ R+ +PYE S S+S +YS A AHII+L SY+ + + QY W
Sbjct: 198 FAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTW 257
Query: 279 LKADLAKINRKKTPWIFVLLHAPWYNTNTAHQGEGESMRNSMEELLYNARVDVVFAGHVH 338
LK +L K+ R +TPW+ VL+H+P YN+ H EGE+MR E +VDVVFAGHVH
Sbjct: 258 LKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVH 317
Query: 339 AYERFTRIYDNK-----------ADPCGPIYITIGDGGNREGLALEFKEPKSPLSMFQES 387
AYER R+ + D P+YITIGD GN + +P+ S F+E+
Sbjct: 318 AYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREA 377
Query: 388 SFGHARLKILDETRAHWSWYRNNDSDAVIADEV 420
SFGH I + T AH+SW RN D AV AD V
Sbjct: 378 SFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSV 410
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 271 bits (692), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 221/397 (55%), Gaps = 30/397 (7%)
Query: 54 PQQVHISLAAKDY----IRVSWITD-DKEAESVVEYGKLPGRYNTVATGEHTSYQFFFYK 108
PQQVHI+ DY + +SW T DK + V Y + A G +Y+++ Y
Sbjct: 25 PQQVHITQG--DYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYT 82
Query: 109 SGKIHHVKIGPLEPATTYYYRCG--GRGPEFSFKMPPA---NFPIEFAIVGDLGQTEWTN 163
S IHH I LE T YYYR G +F F PP + P F ++GD+GQT +N
Sbjct: 83 SAFIHHCTIKDLEYDTKYYYRLGFGDAKRQFWFVTPPKPGPDVPYVFGLIGDIGQTHDSN 142
Query: 164 STLDHV--GSKDYDVFLLPGDLSYAD----FQQPLWDSFGRLVEPYASSRPWMVTEGNHE 217
+TL H S L GDLSY++ WD++GR E + +PW+ T GNHE
Sbjct: 143 TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHE 202
Query: 218 IESIPIILPHA-FKAYNARWLMPYEESGSSSNLYYSFDIAGAHIIMLGSYTDFDEDSAQY 276
I+ P I + F + R+ P+E SGS L+Y+ A AHII+L SY+ F + S QY
Sbjct: 203 IDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQY 262
Query: 277 KWLKADLAKINRKKTPWIFVLLHAPWYNTNTAHQGEGESMRNSMEELLYNARVDVVFAGH 336
KW ++L K+NR +TPW+ VL+HAP YN+ AH EGE+MR E +VD+VF+GH
Sbjct: 263 KWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGH 322
Query: 337 VHAYERFTRIYDNK-----------ADPCGPIYITIGDGGNREGLALEFKEPKSPLSMFQ 385
VH+YER R+ + +D P+YITIGDGGN EGLA E +P+ S F+
Sbjct: 323 VHSYERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFR 382
Query: 386 ESSFGHARLKILDETRAHWSWYRNNDSDAVIADEVRL 422
E+SFGH I + T AH+SW+RN D +V AD + L
Sbjct: 383 EASFGHGIFDIKNRTHAHFSWHRNQDGASVEADSLWL 419
>pdb|3H8N|A Chain A, Crystal Structure Analysis Of Kir2ds4
Length = 195
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 116 KIGPLEPATTYYYRCGGRGPEFSFKMPPANFPIEFAIVG 154
IGP+ P YRC G P +++ + P++ I+G
Sbjct: 60 SIGPMMPVLAGTYRCYGSVPHSPYQLSAPSDPLDMVIIG 98
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 156 LGQTEWTNSTLDHVGSKDYDVFLLPGDLSYADFQQPLWD---------SFGRLVEPYASS 206
+G++ ++ + + + DV +L DL F P+W S RL++ A
Sbjct: 15 VGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF--PVWKEKYEEFIKKSTYRLIDS-ALK 71
Query: 207 RPWMVTEGNHEIESIPIILPHAFKAYNARWLMPYEESGSSSNLYYSFDIAGAHI---IML 263
W++ + + S+ L + K YN + + Y ++ + + + G I ++
Sbjct: 72 NYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIE-RGEKIPNEVIK 130
Query: 264 GSYTDFDEDSAQYKW 278
Y FDE +YKW
Sbjct: 131 KMYEKFDEPGKKYKW 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,797,833
Number of Sequences: 62578
Number of extensions: 656115
Number of successful extensions: 1274
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 6
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)