BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012896
(454 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/420 (86%), Positives = 399/420 (95%), Gaps = 4/420 (0%)
Query: 1 MAQVQA--QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQVQ QGQNVNGG ANA + TTSLYVGDLEANVTDS LYDLFNQ+GQVVSVRVCRD
Sbjct: 1 MAQVQVPVQGQNVNGG-ANA-PYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRD 58
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L+TRRSLGYGYVN+S+ Q+AARAL+MLNFTPLNG PIR+MYSHRDPS+RKSG+GNIFIKN
Sbjct: 59 LTTRRSLGYGYVNYSSPQDAARALDMLNFTPLNGSPIRIMYSHRDPSVRKSGSGNIFIKN 118
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDK IDHKALHDTFSAFGNILSCKVATD +GQSKGYGFVQFDNEESAQKAIEKLNGMLLN
Sbjct: 119 LDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
DKQVYVG FLRKQER++ I+K++F NVYVKNLSE+TTEEDL+K+FGEYGTITSAVVMRDG
Sbjct: 179 DKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDG 238
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGK+KCFGFVNFEN+DDAA AVEALNGKKFDDKEW+VGKAQKK+ERE ELK +FEQ+MKE
Sbjct: 239 DGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKE 298
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
AADKFQGANLYIKNLDDSI D++LKQLFSPFG+ITSCKVMRDP+GISRGSGFVAFSTPEE
Sbjct: 299 AADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 358
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
AS+AL+EMNGKMVVSKPLYVALAQRKEDRRARLQAQF+Q+RPVAMA +VAPRMPMYPPG
Sbjct: 359 ASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAPSVAPRMPMYPPGG 418
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/418 (86%), Positives = 392/418 (93%), Gaps = 3/418 (0%)
Query: 1 MAQVQA--QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQVQ Q Q+VN G N N F TTSLYVGDLEA+VTDSQLYDLFNQ+GQVVSVRVCRD
Sbjct: 1 MAQVQVPVQPQSVNAGANNPN-FVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRD 59
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L++RRSLGYGYVN+SN Q+AARALEMLNFTPLNG PIRVMYSHRDP++RKSGAGNIFIKN
Sbjct: 60 LTSRRSLGYGYVNYSNPQDAARALEMLNFTPLNGSPIRVMYSHRDPTIRKSGAGNIFIKN 119
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDKAIDHKALHDTFSAFGNILSCKVATD +GQSKGYGFVQFD+EE+AQKAIEKLNGMLLN
Sbjct: 120 LDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLN 179
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
DKQVYVG FLRKQERDT +K +F NV+VKNLSE+TTEEDL K+FGE+GTITS VVMRDG
Sbjct: 180 DKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDG 239
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGKSKCFGFVNFEN++DAA+AVEALNGKK DDKEW+VGKAQKK ERE+ELK +FEQ+MKE
Sbjct: 240 DGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKE 299
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
AADKFQGANLYIKNLDDSI DEKLK+LFSPFG+ITSCKVMRDP+GISRGSGFVAFSTPEE
Sbjct: 300 AADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 359
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
ASRALLEMNGK+VVSKPLYVALAQRKEDRRARLQAQF+QMRPVAMA +V PRMPMYPP
Sbjct: 360 ASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGPRMPMYPP 417
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/424 (83%), Positives = 387/424 (91%), Gaps = 7/424 (1%)
Query: 1 MAQVQAQGQNV-------NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV 53
MAQVQ QN G G NQF TTSLYVGDL+ NVTD+QLYDLFNQ+GQVVSV
Sbjct: 1 MAQVQVPPQNAMPGPNGGGGAGGAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSV 60
Query: 54 RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
RVCRDL++RRSLGYGYVNFSN Q+AARAL++LNFTPLN +PIR+MYSHRDPS+RKSG GN
Sbjct: 61 RVCRDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGN 120
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
IFIKNLD+AIDHKALHDTFS FGNILSCKVATD +GQSKGYGFVQFDNEESAQKAIEKLN
Sbjct: 121 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLN 180
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GMLLNDKQVYVG FLRKQER++ +K+KF NV+VKNLSESTT+++L+ +FGE+GTITSAV
Sbjct: 181 GMLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAV 240
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VMRDGDGKSKCFGFVNFEN+DDAARAVEALNGK FDDKEWYVGKAQKKSERE ELK +FE
Sbjct: 241 VMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFE 300
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q+MKEAADK+QGANLY+KNLDDSI DEKLK+LFSPFG+ITSCKVMRDP+G+SRGSGFVAF
Sbjct: 301 QSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAF 360
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM 413
STPEEASRALLEMNGKMVVSKPLYV LAQRKEDRRARLQAQFAQMRPV M +V PR+PM
Sbjct: 361 STPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPM 420
Query: 414 YPPG 417
YPPG
Sbjct: 421 YPPG 424
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/421 (84%), Positives = 390/421 (92%), Gaps = 4/421 (0%)
Query: 1 MAQVQAQGQNV----NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
MAQVQ QN NGGGA NQF TTSLYVGDL+ NVTD+QLYDLFNQ+GQVVSVRVC
Sbjct: 1 MAQVQVPPQNAIPGPNGGGAAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVC 60
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RDL++RRSLGYGYVNFSN Q+AARAL++LNFTPLN +PIR+MYSHRDPS+RKSG GNIFI
Sbjct: 61 RDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFI 120
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLD+AIDHKALHDTFS FGNILSCKVATD +GQSKGYGFVQFDNEESAQKAIEKLNGML
Sbjct: 121 KNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGML 180
Query: 177 LNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
LNDKQVYVG FLRKQER++ +K+KF NV+VKNLSESTT+++L+ FGE+GTITSAVVMR
Sbjct: 181 LNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMR 240
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
DGDGKSKCFGFVNFEN+DDAARAVEALNGKKFDDKEWYVGKAQKKSERE ELK +FEQ+M
Sbjct: 241 DGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSM 300
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
KEAADK+QGANLY+KNLDDS+ D+KLK+LFSPFG+ITSCKVMRDP+GISRGSGFVAFSTP
Sbjct: 301 KEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTP 360
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
+EASRALLEMNGKMVVSKPLYV LAQRKEDRRARLQAQFAQMRPV M +V PR+PMYPP
Sbjct: 361 DEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPP 420
Query: 417 G 417
G
Sbjct: 421 G 421
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/422 (83%), Positives = 389/422 (92%), Gaps = 10/422 (2%)
Query: 3 QVQAQGQN-VNG------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
QVQAQ QN ++G GGAN F TTSLYVGDL+ NVTDSQLYD+FNQ+GQVVSVRV
Sbjct: 4 QVQAQPQNAISGINPAANGGAN---FVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL+TRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIRVMYSHRDPS+RKSGAGNIF
Sbjct: 61 CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAIDHKALHDTFSAFG+ILSCKVA D +GQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQVYVG FLRKQERD ++KSKF NV+VKNLSE+TTEEDL K+F E+GT+TS VVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RD DGKS+CFGFVNFEN+DDAARAV+ LNGK DDKEWYVGKAQKKSERE+ELKH+FEQ
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
MKEAADK+QGANLYIKNLDDSI D+KLK+LF+PFG+ITSCKVMRDP+GISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQAQF+Q+R V M ++VAPRMP+YP
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYP 420
Query: 416 PG 417
PG
Sbjct: 421 PG 422
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/428 (81%), Positives = 385/428 (89%), Gaps = 10/428 (2%)
Query: 1 MAQVQAQGQNVNGGG----------ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQV 50
MAQVQ Q QN G F TTSLYVGDL+ NVTDSQLYDLFNQ+GQV
Sbjct: 1 MAQVQVQPQNAMTGPNGGAAAAAAAGGGGNFVTTSLYVGDLDMNVTDSQLYDLFNQLGQV 60
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG 110
VSVRVCRDL+TRRSLGYGYVN+SN Q+AARAL++LNFTPLN +PIR+MYSHRDPS+RKSG
Sbjct: 61 VSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSG 120
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
GNIFIKNLDKAIDHKALHDTFS+FGNILSCKVA D +GQSKGYGFVQFD EE+AQKAIE
Sbjct: 121 QGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIE 180
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
KLNGMLLNDKQVYVG FLRKQER++ +++KF NV+VKNLSESTT+++L+K+FGE+GTIT
Sbjct: 181 KLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTIT 240
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
SAVVMRDGDGKSKCFGFVNFE++DDAARAVEALNGKK DDKEWYVGKAQKKSERE ELK
Sbjct: 241 SAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKI 300
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ+MKEAADK+QGANLY+KNLDDSI DEKLK+LFS +G+ITSCKVMRDP+G+SRGSGF
Sbjct: 301 KFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGF 360
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR 410
VAFSTPEEASRALLEMNGKMV SKPLYV LAQRKEDRRARLQAQFAQMRPV+M +VAPR
Sbjct: 361 VAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPSVAPR 420
Query: 411 MPMYPPGA 418
MPMYPPG
Sbjct: 421 MPMYPPGG 428
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/423 (79%), Positives = 385/423 (91%), Gaps = 6/423 (1%)
Query: 1 MAQVQAQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
MAQV Q Q N G ANQ TTSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRV
Sbjct: 1 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL++RRSLGYGYVN+SN +A+RAL++LNFTPLNG PIRVMYSHRDPS+RKSG+GNIF
Sbjct: 61 CRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIF 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAIDHKALHDTFSAFG+ILSCKVATD +GQSKG+GFVQFD EE+A KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQV+VG FLRKQER++ K+KF NV+VKNL+E+T+EEDL+ FGE+G ITS VVM
Sbjct: 181 LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RDG+GKSKCFGFVNFEN+DDAAR+VEALNGKK D KEWYVGKAQKKSERE+ELK +FEQ+
Sbjct: 241 RDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQS 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+KEAADK+QGANLY+KNLDDSIDD+KLK+LF+ FG+ITSCKVMRDP+GISRGSGFVAFS+
Sbjct: 301 VKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSS 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR-MPMY 414
PEEA+RAL EMNG+M+VSKPLYVALAQRKEDRRARLQAQF+QM+P+AMAS+VAPR MPMY
Sbjct: 361 PEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMY 420
Query: 415 PPG 417
PPG
Sbjct: 421 PPG 423
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/398 (84%), Positives = 366/398 (91%), Gaps = 1/398 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ TSLYVGDL+ NVTDSQLYD+FNQ+GQVVSVRVCRDL+TRRSLGYGYVN+++ Q+AAR
Sbjct: 34 YMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAAR 93
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL++LNFTP N KPIR+MYSHRDPS+RKSG GNIFIKNLDK IDHKALHDTFS+FGNILS
Sbjct: 94 ALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILS 153
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD +GQS+GYGFVQFDNEE+AQ AI+KLNGMLLNDKQVYVGHFLRK ERD+ NK
Sbjct: 154 CKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNK- 212
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSESTTEEDL+ FGEYG ITSAV+MRD DGKSKCFGFVNFEN+D AA+AV
Sbjct: 213 KFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAV 272
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E+LNGKK DDKEWYVGKAQKKSERELELK QFEQ+MKEA DK+QG NLYIKNLDDSI DE
Sbjct: 273 ESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDE 332
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
LK+LFS FG ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKMVVSKPLYVAL
Sbjct: 333 NLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVAL 392
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
AQRKE+RRARLQAQF+QMRPVAMA +V PRMP+Y PGA
Sbjct: 393 AQRKEERRARLQAQFSQMRPVAMAPSVGPRMPIYSPGA 430
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/423 (79%), Positives = 384/423 (90%), Gaps = 6/423 (1%)
Query: 1 MAQVQAQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
MAQV Q Q N G ANQ TTSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRV
Sbjct: 1 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL++RRSLGYGYVN+SN +A+RAL++LNFTPLNG PIRVMYSHRDPS+RKSG+GNIF
Sbjct: 61 CRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIF 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAIDHKALHDTFSAFG+ILSCKVATD +GQSKG+GFVQFD EE+A KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQV+VG FLRKQER++ K+KF NV+VKNL+E+T+EEDL+ FGE+G ITS VVM
Sbjct: 181 LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RDG+GKSKCFGFVNFEN+DDAAR+VEALNGKK D KEWYVGKAQKKSERE+ELK +FEQ+
Sbjct: 241 RDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQS 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+KEAADK+QGANLY+KNLDDSIDD+KLK+LF+ FG+ITSCKVMRDP+GISRGSGFVAFS+
Sbjct: 301 VKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSS 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR-MPMY 414
PEEA+RAL EMNG+M+VSKPLYVALAQRKEDR ARLQAQF+QM+P+AMAS+VAPR MPMY
Sbjct: 361 PEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMY 420
Query: 415 PPG 417
PPG
Sbjct: 421 PPG 423
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/429 (78%), Positives = 382/429 (89%), Gaps = 11/429 (2%)
Query: 1 MAQVQAQGQNV-------NGGGANA----NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ 49
MA++Q Q Q+ NGG ANA NQF TTSLYVGDL+ NV DSQLYDLFNQ+GQ
Sbjct: 1 MAEIQVQHQSPVSAAPPPNGGVANAPNNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQ 60
Query: 50 VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS 109
VVSVRVCRDL+TRRSLGYGYVNFSN Q+AARAL++LNFTPLN + IR+MYSHRDPSLRKS
Sbjct: 61 VVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRSIRIMYSHRDPSLRKS 120
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G NIFIKNLDKAIDHKALHDTFS+FG ILSCK+ATD +G SKGYGFVQFDNEE+AQ AI
Sbjct: 121 GTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAI 180
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+KLNGML+NDKQVYVGHFLRKQ+R+ ++K+KF NVYVKNLSESTT+E+L +FGEYGTI
Sbjct: 181 DKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTI 240
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TSA++MRD DGKS+CFGFVNFEN DDAA+AVE LNGKKFDDKEWYVGKAQKKSERE ELK
Sbjct: 241 TSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELK 300
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FEQ++KEAADK+ G NLY+KNLDD+I DEKLK++F+ +G+ITSCKVMRDP+GISRGSG
Sbjct: 301 GRFEQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSG 360
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAP 409
FVAFSTPEEA+RAL EMNGKM KPLYVALAQRKE+RRARLQAQF+QMRPVA+ +VAP
Sbjct: 361 FVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAP 420
Query: 410 RMPMYPPGA 418
RMP+YPPGA
Sbjct: 421 RMPLYPPGA 429
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/418 (83%), Positives = 379/418 (90%), Gaps = 6/418 (1%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MAQ+QA V G AN T SLYVGDL+ N+TDSQLYDLF Q GQV+SVRVCRDLS
Sbjct: 1 MAQIQAA---VAGPNGVAN---TASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLS 54
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG NIFIKNLD
Sbjct: 55 TRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLD 114
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K+ID+KALHDTFSAFGNILSCK+ATD +GQSKGYGFVQFDNEESAQ AI+KLNGML+NDK
Sbjct: 115 KSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDK 174
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QVYVG FLRKQER+T +NK+KF NVYVKNLSESTTEEDL+ FGE+G ITS VVMRDGDG
Sbjct: 175 QVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDG 234
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSKCFGFVNFEN+DDAA AVEALNGKKFD+KEWYVGKAQKK ERELELK +FEQ+MKE
Sbjct: 235 KSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVV 294
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
DKFQG NLYIKNLDDSI D+KLK+LFS FG+ITSCKVMRDPSGISRGSGFVAFST EEAS
Sbjct: 295 DKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEAS 354
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
RAL EMNGKMVVSKPLYVALAQRKE+RRARLQAQF+QMRPV+MA +VAPRMPMYPPGA
Sbjct: 355 RALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGA 412
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/418 (83%), Positives = 379/418 (90%), Gaps = 6/418 (1%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MAQ+QA V G AN T SLYVGDL+ N+TDSQLYDLF Q GQV+SVRVCRDLS
Sbjct: 1 MAQIQAA---VAGPNGVAN---TASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLS 54
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG NIFIKNLD
Sbjct: 55 TRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLD 114
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K+ID+KALHDTFSAFGNILSCK+ATD +GQSKGYGFVQFDNEESAQ AI+KLNGML+NDK
Sbjct: 115 KSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNGMLINDK 174
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QVYVG FLRKQER+T +NK+KF NVYVKNLSESTTEEDL+ FGE+G ITS VVMRDGDG
Sbjct: 175 QVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDG 234
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSKCFGFVNFEN+DDAA AVEALNGKKFD+KEWYVGKAQKK ERELELK +FEQ+MKE
Sbjct: 235 KSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSMKEVV 294
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
DKFQG NLYIKNLDDSI D+KLK+LFS FG+ITSCKVMRDPSGISRGSGFVAFST EEAS
Sbjct: 295 DKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEAS 354
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
RAL EMNGKMVVSKPLYVALAQRKE+RRARLQAQF+QMRPV+MA +VAPRMPMYPPGA
Sbjct: 355 RALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGA 412
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/407 (80%), Positives = 376/407 (92%), Gaps = 2/407 (0%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N GG N NQF TSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYVN
Sbjct: 17 NAGGVN-NQF-VTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVN 74
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ N Q+AARALE+LNFTPL+GKPIR+MYS+RDP++R+SG GNIFIKNLDKAIDHKALHDT
Sbjct: 75 YGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDT 134
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D +GQSKGYGFVQ+D+EE+AQKAIEKLNGMLLNDKQVYVG F+RK
Sbjct: 135 FSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKH 194
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD ++K++FTNV+VKNLSEST EE+L+K FGE+G ITS VM+D DGKS+CFGFVNFE
Sbjct: 195 ERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFE 254
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N++DAARAVEALNG K D+K+W+VG+AQKKSERE+ELKH+FEQ+ KEA DK QG NLYIK
Sbjct: 255 NAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIK 314
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDSI DEKLK+LFSP+G+ITSCKVMRDPSG+S+GSGFVAFS PEEASRAL EMNGKMV
Sbjct: 315 NLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMV 374
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
VSKPLYVALAQRKE+RRARLQAQF+QMRP+AMAS+VAPRMPMYPPG
Sbjct: 375 VSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGG 421
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/407 (80%), Positives = 379/407 (93%), Gaps = 2/407 (0%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N GG N NQF TSLYVGDL+ NVTDSQLYDLFNQ+GQVVSVRVCRDL+++RSLGYGYVN
Sbjct: 17 NAGGVN-NQF-VTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVN 74
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ N Q+AARALE+LNFTPL+GKPIR+MYS+RDP++R+SG GNIFIKNLDKAIDHKALHDT
Sbjct: 75 YGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDT 134
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D +GQSKGYGFVQ+D++E+AQKAIEKLNGMLLNDKQVYVG F+RKQ
Sbjct: 135 FSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQ 194
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD ++K++FTNV+VKNLSEST EE+L+K FGE+GTITS VM+D DGKS+CFGFVNFE
Sbjct: 195 ERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFE 254
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N++DAARAVEALNG K D+K+W+VG+AQKKSERE+ELKH+FEQ+ +EA DK QG NLY+K
Sbjct: 255 NAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLK 314
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDSI D+KLK+LFSP+G+ITSCKVMRDPSG+S+GSGFVAFSTPEEASRAL EMNGKMV
Sbjct: 315 NLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMV 374
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
VSKPLYVALAQRKE+RRARLQAQF+QMRP+AMAS+VAPRMPMYPPG
Sbjct: 375 VSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGG 421
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/404 (82%), Positives = 369/404 (91%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G A QF TSLYVGDL+ NVTDSQLYD+FNQ+GQVVSVRVCRDLSTRRSLGYGYVN+SN
Sbjct: 3 GPGAIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSN 62
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
Q+AARAL++LNFTPLN KPIR+MYSHRDPS+RKSG NIFIKNLDK IDHKALHDTFS+
Sbjct: 63 PQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSS 122
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGNILSCKVATD +GQSKGYGFVQFD+EE+AQ AI+KLNGML+NDKQVYVGHFLRKQ+RD
Sbjct: 123 FGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRD 182
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ KF NV+VKNL+ESTT+E+L+ F E+G ITSAVVMRD DGKSKCFGFVNFE++D
Sbjct: 183 GALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESAD 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DAA+AVEALNGKK D +EWYVGKAQKKSERELELK +FEQ+MKE DKFQG NLYIKNLD
Sbjct: 243 DAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
DSI+DEKLK+LFS FG+ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM++SK
Sbjct: 303 DSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISK 362
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
PLYVALAQRKE+RRARLQAQF+QMRPV MA +VA RMPMYPPGA
Sbjct: 363 PLYVALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPMYPPGA 406
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/425 (79%), Positives = 377/425 (88%), Gaps = 8/425 (1%)
Query: 1 MAQVQAQ-------GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV 53
MAQ+Q G N G A QF TSLYVGDL+ NVTDSQLYDLFNQ+GQVVSV
Sbjct: 1 MAQIQVHQAAAPVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSV 60
Query: 54 RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
RVCRDLSTRRSLGYGYVN+SN Q+AARAL++LNFTPLN KP+R+MYSHRDPS+RKSG N
Sbjct: 61 RVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPLRIMYSHRDPSIRKSGMAN 120
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
IFIKNLDK IDHKALHDTFS+FGNILSCKVATD +GQSKGYGFVQFD+EE+AQ AI+KLN
Sbjct: 121 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLN 180
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML+NDKQVYVG+FLRKQERD+ ++ KF N+YVKNL+ESTT+EDL+ F E+G ITSAV
Sbjct: 181 GMLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAV 240
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VMRD DGKSKCFGFVNFEN DDAA+AVEALNGKKFDDKEWYVGKAQKKSERELELK +FE
Sbjct: 241 VMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFE 300
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q++ E+ +K+Q NLYIKNLDDS++DEKLK+LFS FG+ITSCKVM DPSGISRGSGFVAF
Sbjct: 301 QSL-ESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAF 359
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM 413
STPEEASRAL E+NGKMVVSKPLYVA AQRKE+RRARLQAQF+QMRPVAMA +VAPRM M
Sbjct: 360 STPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMAPSVAPRMQM 419
Query: 414 YPPGA 418
YPPGA
Sbjct: 420 YPPGA 424
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/396 (82%), Positives = 369/396 (93%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+TSLYVGDLE NVTDSQLYDLFNQ+GQVVSVRVCRDLSTRRSLGYGYVN+SN +A+RA+
Sbjct: 37 STSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAM 96
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
EMLNFTP+NGK IRVMYSHRDP+LRKSG+ NIFIKNLDK+ID+KALHDTFS+FGNILSCK
Sbjct: 97 EMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCK 156
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD NGQSKGYGFVQ+DNEESAQ AI+KLNGML+NDKQVYVGHFLRKQER++ +KF
Sbjct: 157 IATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKF 216
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
NVYVKNLSESTT+++L+K FGE+G ITSAVVMRD DGKSKCFGF+NFE ++DAA+AVE+
Sbjct: 217 QNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVES 276
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNGKKFDDKEWYVGKAQKKSERE ELK +FEQ KEA DK+QG NLY+KNLDD+IDDEKL
Sbjct: 277 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKL 336
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+LFS FG+ITSCKVMRDPSGISRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQ
Sbjct: 337 KELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 396
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
RKE+RRA+LQAQF+Q+RPVAM ++APRMP+YPPGA
Sbjct: 397 RKEERRAKLQAQFSQLRPVAMPPSLAPRMPIYPPGA 432
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/430 (75%), Positives = 378/430 (87%), Gaps = 12/430 (2%)
Query: 1 MAQVQAQGQNVNG------------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMG 48
MAQVQ QGQ NG GGA A QFG TSLYVGDL+ NVTDSQL+D F QMG
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
VV+VRVCRDL TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SGAGNIFIKNLD++IDHKALHDTFS+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKA
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
IEKLNGMLLNDKQVYVG FLR+QERD+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG
Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
ITSAVVM+DG+GKSK FGFVNFEN+DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ ++EQN+KEAADKFQ +NLY+KNLD SI DEKLK++FSPFG++TS KVMRDP+G S+GS
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA 408
GFVAF+TPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRR RLQAQF+Q+RPVAM +V
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVG 420
Query: 409 PRMPMYPPGA 418
PRMP+YPPG
Sbjct: 421 PRMPVYPPGG 430
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/423 (77%), Positives = 378/423 (89%), Gaps = 6/423 (1%)
Query: 1 MAQVQAQGQN-----VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
M+QVQ+Q Q V NQF +TSLYVGDLE NVT++QLYDLFNQ+GQ+VS+RV
Sbjct: 1 MSQVQSQPQGPVSAPVGMASNGGNQFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL++RRSLGYGYVN++N +AA+ALE+LNFTP+NGKPIR+MYS+RDP++RKSGAGNI+
Sbjct: 61 CRDLTSRRSLGYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIY 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAID+KALHDTFSAFGNILSCKVATD GQS GYGFVQFDNEESA+ AI+KLNGM
Sbjct: 121 IKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQVYVG FLR+QER++ +K+KF NVYVKNLSE+TTEEDL+K FGEYG ITSAVVM
Sbjct: 181 LLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RDGDGKS+CFGFVNFEN DDAAR+VEALNGK FD+KEWYVGKAQKKSERE+ELK QFEQ
Sbjct: 241 RDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQT 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+KE DKF+G NLY+KNLDDSI D+KLK+LFS FG+ITSCKVMRDP+G+S+GSGFVA+ST
Sbjct: 301 LKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYST 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
EEAS+AL EMNGKM+VSKPLYVALAQRKE+RRARLQAQF+QMRP AMA V PRMPMYP
Sbjct: 361 AEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRP-AMAPAVGPRMPMYP 419
Query: 416 PGA 418
G
Sbjct: 420 HGT 422
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/423 (78%), Positives = 379/423 (89%), Gaps = 6/423 (1%)
Query: 1 MAQVQAQGQNV----NGGGAN-ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
MAQVQ Q Q NG +N NQF TSLYVGDLE NVT++QLYDLFNQ GQVVS+RV
Sbjct: 1 MAQVQVQPQAPVSAPNGVVSNGVNQFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRV 60
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRDL++RRSLGYGYVN++N +AA+A+E+LNFTP+NGKPIR+MYS+RDP++RKSG GNI+
Sbjct: 61 CRDLTSRRSLGYGYVNYNNVHDAAQAIEVLNFTPVNGKPIRIMYSYRDPTIRKSGTGNIY 120
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDKAID+KALHDTFSAFG+ILSCKVATD GQS GYGFVQFDNEESA+ AI+KLNGM
Sbjct: 121 IKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGM 180
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
LLNDKQVYVG FLRKQER++ I+K+ F NVYVKNLSE+TTEEDL+K FGEYGTITSAVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVM 240
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RDG+GKS+CFGFVNFEN DDAA++VEALNGK FD+KEWYVGKAQKKSERE+ELK +FEQ
Sbjct: 241 RDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQT 300
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+KE DKFQG NLY+KNLDDSI D+KLK+LFS FG+ITSCKVMRDP+G+SRGSGFVAFST
Sbjct: 301 LKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFST 360
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
EEASRAL EMNGKMVVSKPLYVALAQRKE+RRARLQAQ++Q+RP AMA + PRMP+YP
Sbjct: 361 AEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRP-AMAPPIGPRMPIYP 419
Query: 416 PGA 418
PG
Sbjct: 420 PGT 422
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/399 (81%), Positives = 365/399 (91%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF +TSLYVGDLE+NVTDS LYDLF Q+G VVSVRVCRDLSTRRSLGYGYVN+ N Q+AA
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAA 87
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+MLNFTPLNGKPIR+MYS RDPS+R+SG NIFIKNLDKAID+KAL+DTFS FG IL
Sbjct: 88 RALDMLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAIL 147
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCK+ATD +GQSKGYGFVQFDNEESA+ A +KLNGMLLNDKQVYVG F+RKQER++ NK
Sbjct: 148 SCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERESATNK 207
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+KF NVYVKNL ESTT+EDL+ FGEYG ITSAVVM+DGDGKSKCFGFVNFEN+DDAAR+
Sbjct: 208 TKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARS 267
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALNGKKFDDKEWYVGKAQKK+ERE+ELK +FEQ++KEA DKFQG NLY+KNLDDSI D
Sbjct: 268 VEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIAD 327
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+KL++LFS FG+ITSCKVMRDP+GISRGSGFVAFST EEASRAL +MNGKMV SKPLYVA
Sbjct: 328 DKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVA 387
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
LAQRKEDRRARLQAQF+QMRP AMA +V PRM MYPPGA
Sbjct: 388 LAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGA 426
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/420 (80%), Positives = 373/420 (88%), Gaps = 5/420 (1%)
Query: 2 AQVQAQGQNVNGGGANAN-----QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
AQVQ Q Q A QF TTSLYVGDLE NV DSQLYDLF+QMG VVSVRVC
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAGGNQFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVC 62
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RDLSTRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG GNIFI
Sbjct: 63 RDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFI 122
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK IDHKALHDTFSAFGNILSCKVATD +G SKG+GFVQFD+EE+AQKAI+KLNGML
Sbjct: 123 KNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGML 182
Query: 177 LNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
LNDKQV+VG F+RKQER++ INK KF NV+VKN+SE TEEDL + FGE+G ITS VVMR
Sbjct: 183 LNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMR 242
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
DGDGKSKCFGFVNFEN DDAA +VEALNG+KFDDKEWYVGKAQKKSERE+ELK +FEQNM
Sbjct: 243 DGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNM 302
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
KEA DKFQGANLYIKNLDDSI D+KLK+LF+ FG+ITSCKVMRDP+G+SRGSGFVAFS+P
Sbjct: 303 KEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSP 362
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
EEASRAL EMN KMVVSKPLYVALAQRKEDRRARLQAQF+QMRPV M +V PR+PMYPP
Sbjct: 363 EEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPP 422
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/429 (75%), Positives = 377/429 (87%), Gaps = 16/429 (3%)
Query: 1 MAQVQAQGQNVNG------------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMG 48
MAQVQ QGQ NG GGA A FGTTSLYVGDL+ NVTDSQL+D F+QMG
Sbjct: 1 MAQVQLQGQTPNGSTVAVTSAPVTSGGATAAGFGTTSLYVGDLDVNVTDSQLFDAFSQMG 60
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
VVSVRVCRDL+TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+
Sbjct: 61 PVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SGAGNIFIKNLD++IDHKALHDTFS FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKA
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
IEKLNGMLLNDKQVYVG FLR+QERD+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG
Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
ITSAVVM+DGDGKSK FGFVNFEN+DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL
Sbjct: 241 ITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ ++EQN+KEAADKFQ +NLY+KNLD SI DEKLK++FSPFG++TSCKVMRDP+G S+GS
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGS 360
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA 408
GFVAFSTPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRR AQF+Q+RPVAM +V
Sbjct: 361 GFVAFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRR----AQFSQVRPVAMQPSVG 416
Query: 409 PRMPMYPPG 417
PRMP+YPPG
Sbjct: 417 PRMPVYPPG 425
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/426 (77%), Positives = 376/426 (88%), Gaps = 9/426 (2%)
Query: 1 MAQVQAQGQNV-------NGGGAN-ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS 52
MAQ+Q Q Q NG N ANQF TTSLYVGDLE NV DSQLYDLFNQ+GQVVS
Sbjct: 1 MAQIQVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVS 60
Query: 53 VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG 112
VRVCRDL+TRRSLGYGYVNF+N Q+AARAL++LNFTP+N K IRVMYSHRDPS RKSG
Sbjct: 61 VRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTA 120
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
NIFIKNLDK IDHKALHDTFS+FG I+SCK+ATD +GQSKGYGFVQF+ E+SAQ AI+KL
Sbjct: 121 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
NGML+NDKQV+VGHFLRKQ+RD ++K+KF NVYVKNLSES TE+DL+ FG YGTITSA
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSA 240
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+MRD DG+SKCFGFVNFEN++DAA+AVEALNGKK DDKEWYVGKAQKKSERE ELK +F
Sbjct: 241 VLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRF 300
Query: 293 EQNMKEA-ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
EQ +KE+ DKFQG NLY+KNLDDSI DEKLK++FS FG+ITS K+MRDP+G+SRGSGFV
Sbjct: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFV 360
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM 411
AFSTPEEASRAL EMNGKM+VSKPLYVA+AQRKEDRRARLQAQF+QMRPVA+ +VAPRM
Sbjct: 361 AFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRM 420
Query: 412 PMYPPG 417
P+YPPG
Sbjct: 421 PLYPPG 426
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/427 (78%), Positives = 378/427 (88%), Gaps = 9/427 (2%)
Query: 1 MAQVQAQGQN---------VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV 51
MAQ+Q Q Q+ V N NQF TTSLYVGDLE NV D+QLYDLFNQ+ QVV
Sbjct: 1 MAQIQVQHQSPVSAPPPNGVANAPNNPNQFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVV 60
Query: 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
SVRVCRDL+TRRSLGYGYVNFSN Q+AARAL++LNFTPLN +PIR+MYSHRDPSLRKSG
Sbjct: 61 SVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSLRKSGT 120
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
NIFIKNLDKAIDHKALHDTFS+FG ILSCK+ATD +G SKGYGFVQFD+EESAQ AI+K
Sbjct: 121 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDK 180
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LNGML+NDKQVYVGHFLRKQ+R+ ++K+KF NVYVKNLSESTT+E+L K FGEYGTITS
Sbjct: 181 LNGMLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITS 240
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
AV+MRD DGKS+CFGFVNFEN DDAA+AVE LNGKK DDKEWYVGKAQKKSERE ELK +
Sbjct: 241 AVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGR 300
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
FEQ++KE+ADK+QG NLY+KNLDD+I DEKLK++F+ +G+ITSCKVMRDP+GI RGSGFV
Sbjct: 301 FEQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFV 360
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM 411
AFSTPEEASRAL EMNGKM+ KPLYVALAQRKEDRRARLQAQF+QMRPVA+ +VAPRM
Sbjct: 361 AFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPVAITPSVAPRM 420
Query: 412 PMYPPGA 418
P+YPPGA
Sbjct: 421 PLYPPGA 427
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/393 (86%), Positives = 369/393 (93%), Gaps = 3/393 (0%)
Query: 1 MAQVQ--AQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQVQ AQ QNVNGG N N F TTSLYVGDLEANVTDSQLYDLFNQ+GQVVSVRVCRD
Sbjct: 1 MAQVQVPAQPQNVNGGANNPN-FVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRD 59
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L++RRSLGYGYVN+SN Q+AARALE+LNFTP+NG PIRVMYSHRDPS+RKSGAGNIFIKN
Sbjct: 60 LTSRRSLGYGYVNYSNPQDAARALEVLNFTPVNGSPIRVMYSHRDPSVRKSGAGNIFIKN 119
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDKAIDHKALHDTFS FGNILSCKVATD +GQSKGYGFVQFD+EE+AQKAIEKLNGMLLN
Sbjct: 120 LDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLN 179
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
DKQVYVG FLRKQERDT +K++F NV+VKNLSE+T EEDL K+FGE+GTITS VVMRDG
Sbjct: 180 DKQVYVGPFLRKQERDTATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDG 239
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGKS+CFGFVNFEN+DDAA+A EALNGKKFDDKEW+VGKAQKK ERE+ELK +FEQ+MKE
Sbjct: 240 DGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKE 299
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
AADKFQGANLYIKNLDDSI DEK+K+LFSPFG+ITSCKVMRDP+GISRGSGFVAFSTPEE
Sbjct: 300 AADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEE 359
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
ASRALLEMNGKMV SKPLYVALAQRKEDRRARL
Sbjct: 360 ASRALLEMNGKMVASKPLYVALAQRKEDRRARL 392
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 158/286 (55%), Gaps = 17/286 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
++++ +L+ + L+D F+ G ++S +V DL + S GYG+V + N + A +A+E
Sbjct: 26 SLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEV 85
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN +N + V + RD + KS N+++KNL ++ + L +F +G I S
Sbjct: 86 LNFTPVNGSPIRVMY----SHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILS 141
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G+SK +GFV F++ + A +A+E LNG +DK+ YVG +K ER+
Sbjct: 142 CKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERD------ 195
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A DK + N+++KNL ++ +E L + F FG+ITS VMRD G SR GFV
Sbjct: 196 ------TATDKTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFV 249
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
F ++A++A +NGK K +V AQ+K +R L+ +F Q
Sbjct: 250 NFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 295
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/399 (80%), Positives = 368/399 (92%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF TTSLYVGDL+ +VTDSQLYDLFNQ+GQVVSVRVCRDLST RSLGYGYVN+SN Q+A
Sbjct: 36 QFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDAT 95
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RA+++LNFTPLN K IRV S RDP+ RKSGAGNIFIKNLDK+ID KALH+TFS+FG I+
Sbjct: 96 RAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTII 155
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCK+ATD +GQSKGYGFVQ+D+EE+AQ AI+KLNGML+NDKQVYVG FLRKQ+RD+E++K
Sbjct: 156 SCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSK 215
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+KF N+YVKNLS+ST+E+DL+K+FGEYGTITS VVMRD DGKSKCFGFVNFEN +DAA+A
Sbjct: 216 TKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKA 275
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ALNGKKFDDKEWYVGKAQKKSERE+ELK +FEQ +KE DK+QG NLY+KNLDD+IDD
Sbjct: 276 VDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDD 335
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
EKLK+LFS +G+ITSCKVMRDPSGISRGSGFVAFSTPEEASRAL EMNGKM+VSKPLYVA
Sbjct: 336 EKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 395
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
LAQRKE+RRARLQAQF+QMRPVAM ++ PRMPMY PGA
Sbjct: 396 LAQRKEERRARLQAQFSQMRPVAMPPSMGPRMPMYSPGA 434
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/405 (77%), Positives = 368/405 (90%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GGA A QFG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRRSLGYGYVNF+
Sbjct: 10 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 69
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+SGAGNIFIKNLD++IDHKALHDTFS
Sbjct: 70 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 129
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKAIEKLNGMLLNDKQVYVG FLR+QER
Sbjct: 130 SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 189
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG ITSAVVM+DG+GKSK FGFVNFEN+
Sbjct: 190 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENA 249
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL+ ++EQN+KEAADKFQ +NLY+KNL
Sbjct: 250 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 309
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D SI DEKLK++FSPFG++TS KVMRDP+G S+GSGFVAF+TPEEA+ A+ +++GKM+ S
Sbjct: 310 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 369
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
KPLYVA+AQRKEDRR RLQAQF+Q+RPVAM +V PRMP+YPPG
Sbjct: 370 KPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGG 414
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/434 (76%), Positives = 374/434 (86%), Gaps = 21/434 (4%)
Query: 1 MAQVQAQGQNV----------------NGGGANANQFGTTSLYVGDLEANVTDSQLYDLF 44
MAQVQ Q Q NGG +A QF +TSLYVGDL+ +V DSQLYDLF
Sbjct: 1 MAQVQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLF 60
Query: 45 NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 104
NQMGQVVSVRVCRDLSTRRSLGYGYVN++ A EA RAL+ LNFTPLNGKPIR+MYS+RDP
Sbjct: 61 NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDP 120
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
++RKSGAGNIFIKNLDK+ID+KALHDTFS FGNILSCKVATD GQS+GYGFVQFDNEES
Sbjct: 121 TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEES 180
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A+ AI+KLNGMLLNDKQV+VG FLRKQER++ +K++F NVYVKNLSE+TTE+DL+K FG
Sbjct: 181 AKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
E+G ITS VMRD DGKSKCFGFVNF++ DDAAR+VEALNGKKFDDKEWYVGKAQKK ER
Sbjct: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E+ELK +FEQ++KE ADKF+G NLY+KNLDDSI D+KLK+LFS FG+ITSCKVMRDP+GI
Sbjct: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI 360
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA 404
SRGSGFVAFST EEAS+AL EMNGKMVVSKPLYVALAQRKE+RRARLQAQF+QMRP
Sbjct: 361 SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRP---- 416
Query: 405 STVAPRMPMYPPGA 418
V PRMPMYPP A
Sbjct: 417 -PVGPRMPMYPPVA 429
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/420 (77%), Positives = 373/420 (88%), Gaps = 4/420 (0%)
Query: 1 MAQVQAQGQNVNGGGANAN----QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
MA+VQ ++G N +F + SLYVGDL+ NVTDSQL+DLF+Q+ QVVS+RVC
Sbjct: 142 MAEVQDHEGLLSGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVC 201
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RD +T RSLGYGYVN+++ ++AARAL++LNFTPLNGKPIR+MYSHRDPS+RKSG GNIFI
Sbjct: 202 RDSTTHRSLGYGYVNYTDLEDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTGNIFI 261
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK IDHKALHDTFSAFGNILSCKVATD +G SKG+GFVQFD+EE+AQKAI+KLNGML
Sbjct: 262 KNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGML 321
Query: 177 LNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
LNDKQV+VG F+RKQER++ INK KF NV+VKN+SE TEEDL + FGE+G ITS VVMR
Sbjct: 322 LNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMR 381
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
DGDGKSKCFGFVNFEN DDAA +VEALNG+KFDDKEWYVGKAQKKSERE+ELK +FEQNM
Sbjct: 382 DGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNM 441
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
KEA DKFQGANLYIKNLDDSI D+KLK+LF+ FG+ITSCKVMRDP+G+SRGSGFVAFS+P
Sbjct: 442 KEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSP 501
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
EEASRAL EMN KMVVSKPLYVALAQRKEDRRARLQAQF+QMRPV M +V PR+PMYPP
Sbjct: 502 EEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPP 561
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 233/453 (51%), Gaps = 73/453 (16%)
Query: 2 AQVQAQGQNVNGGGANAN-----QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
AQVQ Q Q A QF TTSLYVGDLE NV DSQLYDLF+QMG VVSVRVC
Sbjct: 3 AQVQVQPQGPGPAPNGAAGAGGNQFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVC 62
Query: 57 RDLSTRRSLGYGYVNFSNAQE--------------------------------------A 78
RDLSTRRSLGYGYVN+SN Q+
Sbjct: 63 RDLSTRRSLGYGYVNYSNPQDEKEKETIYEGFCVFCLIPSNYAIFFVLGFSYIHKKRRGK 122
Query: 79 ARALEM----LNFTPLNGKPIRVM-------YSHRDPSLRKS--GAGNIFIKNLDKAIDH 125
R E+ LNF + G+ V ++ +P++ S + ++++ +LD +
Sbjct: 123 ERGGELQKRELNFLRVGGEMAEVQDHEGLLSGTNDEPNIGPSRFASASLYVGDLDLNVTD 182
Query: 126 KALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
LHD FS ++S +V D +S GYG+V + + E A +A++ LN LN K + +
Sbjct: 183 SQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLNFTPLNGKPIRI 242
Query: 185 GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ RD I KS N+++KNL + + L +F +G I S V D G SK
Sbjct: 243 MY----SHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKG 298
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
GFV F++ + A +A++ LNG +DK+ +VG +K ERE + + KF
Sbjct: 299 HGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKE----------KFN 348
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
N+++KN+ + + +E L ++F FG ITS VMRD G S+ GFV F ++A+ ++
Sbjct: 349 --NVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVE 406
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+NG+ K YV AQ+K +R L+++F Q
Sbjct: 407 ALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQ 439
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/398 (77%), Positives = 366/398 (91%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A A QFGTTSLYVGDL+ NVTDSQL+D F+QMGQVVSVRVCRDL+TRRSLGYGYVNF+
Sbjct: 30 GAAAAAQFGTTSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFT 89
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ Q+AARA++ LN+ PLNGKP+RVMYSHRDPS+R+SGAGNIFIKNLDK+IDHKALHDTFS
Sbjct: 90 SPQDAARAIQELNYIPLNGKPVRVMYSHRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFS 149
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNI+SCKVA D +GQSKGYGFVQ++ EESAQKA+ +LNGMLLNDKQVYVG FLR+QER
Sbjct: 150 VFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQER 209
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D+ NK+ FTNVYVKNL+ESTT++DL+ FGE+G ITSAVVM+DG+GK K FGFVNFEN+
Sbjct: 210 DSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENA 269
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
DDAA+AVE+LNGK FDDKEW+VG+AQKKSERE+ELK Q+EQ++KEAADKFQ +NLY+KNL
Sbjct: 270 DDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNL 329
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDS+ DEKLK+LF+P+G++TSCKVMRDP+G+SRGSGFVAFSTPEEA++A+ EM+GKM+ +
Sbjct: 330 DDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIEN 389
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM 411
KPLYVA+AQRKEDRRARLQAQF+QMRPVAM V PRM
Sbjct: 390 KPLYVAVAQRKEDRRARLQAQFSQMRPVAMPPPVGPRM 427
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/433 (73%), Positives = 366/433 (84%), Gaps = 15/433 (3%)
Query: 1 MAQVQAQGQNVNGGGANAN---------------QFGTTSLYVGDLEANVTDSQLYDLFN 45
MAQ+Q QGQN NGG A Q GTTSLYVGDL+A VTDSQL++ F+
Sbjct: 1 MAQIQHQGQNANGGVAVPGAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFS 60
Query: 46 QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS 105
Q GQVVSVRVCRD++TRRSLGYGYVN++ Q+A+RAL LNF LNG+ IRVMYS RDPS
Sbjct: 61 QAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPS 120
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
LRKSG GNIFIKNLDK+IDHKALH+TFSAFG ILSCKVA D +GQSKGYGFVQ+D +E+A
Sbjct: 121 LRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAA 180
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
Q+AI+KLNGMLLNDKQVYVG F+ K +RD K KFTNVYVKNLSES ++E+L K FGE
Sbjct: 181 QRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGE 240
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G TS V+MRDG+GKSK FGFVNFENSDDAARAV+ALNGK FDDKEW+VGKAQKKSERE
Sbjct: 241 FGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERE 300
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
ELK +FEQ++KEAADK QG+NLY+KNLD+S+ D+KL++ F+PFG+ITSCKVMRDP+G+S
Sbjct: 301 TELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVS 360
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMAS 405
RGSGFVAFSTPEEASRA+ EMNGKM+V+KPLYVALAQRKEDR+ARLQAQF+QMRPV M
Sbjct: 361 RGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPP 420
Query: 406 TVAPRMPMYPPGA 418
V PRM MYPPG
Sbjct: 421 AVGPRMQMYPPGG 433
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/439 (72%), Positives = 364/439 (82%), Gaps = 21/439 (4%)
Query: 1 MAQVQAQGQNVNGGGANAN---------------------QFGTTSLYVGDLEANVTDSQ 39
MAQ+Q QGQN NGG A Q GTTSLYVGDL+A VTDSQ
Sbjct: 1 MAQIQHQGQNANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQ 60
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
L++ F Q GQVVSVRVCRD++TRRSLGYGYVN++ Q+A+RAL LNF LNG+ IRVMY
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMY 120
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GNIFIKNLDK+IDHKALH+TFSAFG ILSCKVA D +GQSKGYGFVQ+
Sbjct: 121 SVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQY 180
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDL 219
D +E+AQ AI+KLNGMLLNDKQVYVG F+ K +RD K KFTNVYVKNLSES ++E+L
Sbjct: 181 DTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 240
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
K FGE+G TS V+MRDG+GKSK FGFVNFENSDDAARAV+ALNGK FDDKEW+VGKAQ
Sbjct: 241 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Query: 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
KKSERE ELK +FEQ++KEAADK QG+NLY+KNLD+S+ D+KL++ F+PFG+ITSCKVMR
Sbjct: 301 KKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR 360
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
DPSG+SRGSGFVAFSTPEEA+RA+ EMNGKM+V+KPLYVALAQRKEDR+ARLQAQF+QMR
Sbjct: 361 DPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMR 420
Query: 400 PVAMASTVAPRMPMYPPGA 418
PV M V PRM MYPPG
Sbjct: 421 PVNMPPAVGPRMQMYPPGG 439
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/413 (76%), Positives = 362/413 (87%), Gaps = 4/413 (0%)
Query: 9 QNVNGGGANA---NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
+NVN A A NQ TTSLYVGDL+ +VTDSQLYDLFNQ+GQVVSVR+CRDL++++SL
Sbjct: 6 ENVNNDVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSL 65
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GYGYVNFSN +AA+A+++LNFTPLN KPIR+MYSHRDPS+RKSGA NIFIKNLD+AIDH
Sbjct: 66 GYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDH 125
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KAL+DTFS FGNILSCK+A D +G SKGYGFVQF+NEESAQ AI+KLNGMLLNDK VYVG
Sbjct: 126 KALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
HF RKQ+RD ++ +KF NVYVKNLSES T++DL+ +FGEYGTITSAVVMRD DGKSKCF
Sbjct: 186 HFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCF 245
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNFEN+D AA AVEALNGKKFDDKEWYVGKA KK ERELELK + EQ+MKE DKF G
Sbjct: 246 GFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYG 305
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
ANLY+KNLDDS+ DEKL +LFS FG++TSCK++RDP GISRGSGFVAFSTPEEA+RAL E
Sbjct: 306 ANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAE 365
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
MNGKMV KPLYVA AQ+KE+R+ARLQAQF+Q+RPV MA +APR+P YP G
Sbjct: 366 MNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVTMAP-IAPRLPFYPAGV 417
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/397 (74%), Positives = 358/397 (90%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD++TRRSLGY YVN+S+ +AAR
Sbjct: 37 FPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAAR 96
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NGKPIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KAL+DTF FGNILS
Sbjct: 97 ALEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 156
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD +G+SKGYGFVQ++ +E+AQ AI+KLNGML+NDK+VYVG F+RKQERD +
Sbjct: 157 CKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQV 216
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSE+TTE+DL++ FG++GTITSAVVMR+GDG+SKCFGFVNFE+ DDAA+AV
Sbjct: 217 KFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAV 276
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKFDDKEWYVG+AQKKSERE+ELK +FE+N++EAADK+Q NLY+KNLDDS+DD+
Sbjct: 277 QELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDD 336
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+ASRAL EMN KMV SKPLYVAL
Sbjct: 337 KLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVAL 396
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
AQRKEDR+ARLQAQF+Q+RPV +A +V PRMPM+PPG
Sbjct: 397 AQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPG 433
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/413 (75%), Positives = 361/413 (87%), Gaps = 4/413 (0%)
Query: 9 QNVNGGGANA---NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
+NVN A A NQ TTSLYVGDL+ +VTDSQLYDLFNQ+GQVVSVR+CRDL++++SL
Sbjct: 6 ENVNNDVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSL 65
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GYGYVNFSN +AA+A+++LNFTPLN KPIR+MYSHRDPS+RKSGA NIFIKNLD+AIDH
Sbjct: 66 GYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDH 125
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KAL+DTFS FGNILSCK+A D +G SKGYGFVQF+NEESAQ AI+KLNGMLLNDK VYVG
Sbjct: 126 KALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
HF RKQ+RD ++ +KF NVYVKNLSES T++DL+ +FGEYGTITSAVVMRD DGKSKCF
Sbjct: 186 HFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCF 245
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNFEN+D AA AVEALNGKKFDDKEWYVGKA KK ERELELK + EQ+MKE DKF G
Sbjct: 246 GFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYG 305
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
ANLY+KNLDDS+ DEKL +LFS FG++TSCK++RDP GISRGSGFVAFSTPEEA+RAL E
Sbjct: 306 ANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAE 365
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
MNGKMV KPLYVA AQ+KE+R+ARL AQF+Q+RPV MA +APR+P YP G
Sbjct: 366 MNGKMVAGKPLYVAPAQKKEERKARLPAQFSQVRPVTMAP-IAPRLPFYPAGV 417
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/399 (75%), Positives = 356/399 (89%), Gaps = 1/399 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AAR
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVAT+++G+SKGYGFVQF+ EE+AQ AI KLNGMLLNDK+VYVG F+RKQER+
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSESTTE++L++ FG++G ITS VVMR+GDGKS+CFGFVNFEN DDAARAV
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DD 319
E LNGKKFDDKEWYV +AQKKSERE+ELK +FE+N+KEAADK QG NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
EKLK++F+ FG+ITSCKVMRD +G+S+GSGFVAF + E+ASRAL+ MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
LAQRKE+RRARLQAQF+QMRP+ M +VAPRMPMYPPG
Sbjct: 396 LAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGV 434
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/448 (69%), Positives = 367/448 (81%), Gaps = 8/448 (1%)
Query: 1 MAQVQAQGQNVNGGGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
MAQV + ++ + AN T SLYVGDL +V D QLYDLFNQ+ QVVSVR+CRD+
Sbjct: 1 MAQV-LENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDV 59
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
+T++SLGYGYVNFSNA +AA+A+++LNFTPLNGK IR+MYS RDPS RKSGA N+FIKNL
Sbjct: 60 ATQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNL 119
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
DKAIDHKAL+DTFSAFGNILSCKVATD +GQSKG+GFVQF++EESAQ AI+KLNGML+ND
Sbjct: 120 DKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLIND 179
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
KQV+VG FLRKQ+R++ ++ +KF NV+VKNL +S TE DL++ FGEYG ITSAVVMRD D
Sbjct: 180 KQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVD 239
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GKSK FGFVNF N DDAA+AVEALNGK FD KEWYVGKAQKKSERELELK Q EQ KE
Sbjct: 240 GKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKET 299
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
DK+ G NLYIKNLDDS+ DE+L +LFS FG+ITSCKVMRDP+GISRGSGFV+FS E A
Sbjct: 300 VDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGA 359
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA- 418
+RAL EMNGKMV KPLYVALAQRKEDRRARLQAQF+Q RP A+ V+PRMP+YP GA
Sbjct: 360 TRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAP 419
Query: 419 -----WIWLSAAACSWYEARWGSHAKFL 441
+++ AA + +A +G F+
Sbjct: 420 AIGQQFLYGQAAPATIPQAAFGYQQHFV 447
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 301/399 (75%), Positives = 356/399 (89%), Gaps = 1/399 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AAR
Sbjct: 36 FQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAAR 95
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFS FGNILS
Sbjct: 96 ALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILS 155
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVAT+++G+SKGYGFVQF+ EE+AQ AI KLNGMLLNDK+VYVG F+RKQER+
Sbjct: 156 CKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNP 215
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNLSESTTE++L++ FG++G ITS VVMR+GDGKS+CFGFVNFEN DDAARAV
Sbjct: 216 KFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAV 275
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DD 319
E LNGKKFDDKEWYV +AQKKSERE+ELK +FE+N+KEAADK QG NLY+KNLDDSI DD
Sbjct: 276 EDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
EKLK++F+ FG+ITSCKVMRD +G+S+GSGFVAF + E+ASRAL+ MNGKM+ SKPLYVA
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVA 395
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
LAQRKE+RRARLQAQF+QMRP+ M +VAPRMPMYPPG
Sbjct: 396 LAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYPPGV 434
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 313/448 (69%), Positives = 366/448 (81%), Gaps = 8/448 (1%)
Query: 1 MAQV-QAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
MA + Q + GAN + T SLYVGDL+ +V D QLYDLFNQ+ QVVSVR+CRD+
Sbjct: 1 MAHIPQTPTNDAAASGANPS-MTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDV 59
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
+T++SLGYGYVNFSNA++AA+A+++LNFTPLNGK IR+MYS RDPS RKSGA N+FIKNL
Sbjct: 60 ATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNL 119
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
DKAIDHKAL DTFSAFGNILSCK+ATD +GQSKG+GFVQF++EESAQ AI+KLNGML+ND
Sbjct: 120 DKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLIND 179
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
KQVYVG F RKQ+R++ ++ +KF NVYVKNL E+TTE DL+ FGEYG ITSAVVMRD D
Sbjct: 180 KQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVD 239
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GKSK FGFVNF N +DAA+AVEALNGK FD KEWYVGKAQKKSERELELK + EQ+ KE
Sbjct: 240 GKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKET 299
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
DK+ G NLYIKNLDDS+ DE+L++LFS FG+ITSCKVMRDPSGISRGSGFVAFS E A
Sbjct: 300 VDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGA 359
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA- 418
S AL EMNGKMV KPLYVALAQRKEDRRARLQAQF+Q RPVA+ V+PRMP+YP GA
Sbjct: 360 SWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLYPLGAP 419
Query: 419 -----WIWLSAAACSWYEARWGSHAKFL 441
++ AA +A +G F+
Sbjct: 420 GIGQQLLYGQAAPSMIPQAAFGYQQHFV 447
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/396 (74%), Positives = 349/396 (88%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
EDR+A LQAQF+Q+RPV M ++APR+PMYPP A +
Sbjct: 400 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPL 435
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/396 (74%), Positives = 348/396 (87%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 399
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
EDR+ LQAQF+Q+RPV M ++APR+PMYPP A +
Sbjct: 400 EDRKVMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPL 435
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 297/405 (73%), Positives = 348/405 (85%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+ GGA TTSLYVGDLEANVTDSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN
Sbjct: 110 HAGGAAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVN 169
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+SN +AARA+E LNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LHDT
Sbjct: 170 YSNPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDT 229
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFG ILSCKVA D GQSKG+GFVQ++ EESAQ A++ LNGML+NDK VYVG FLRKQ
Sbjct: 230 FSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQ 289
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD +K+KF NV+VKNLSESTT+EDL K F EYGTITSAVVM DGKS+CFGFVNFE
Sbjct: 290 ERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFE 349
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ DDAARAVE LNGKK +DKEWYVG+AQKKSERE++LK +FEQ+MK+AADK+QG NLY+K
Sbjct: 350 SPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLK 409
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD I D++L++LFS FG ITSCK+MRD +G+S+GSGFV+FST EEAS+AL EMNGKM+
Sbjct: 410 NLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMI 469
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
KPLYVA AQRKE+R+A LQAQF+QMRPV M ++ PR+PMYPP
Sbjct: 470 SGKPLYVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPP 514
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 297/407 (72%), Positives = 350/407 (85%), Gaps = 1/407 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG NQF +TS+YVGDLE NV+++QLY++F+Q G VVS+RVCRDL TRRSLGY YVN+
Sbjct: 14 GGPAPNQFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYH 73
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+AQ+A RALE+LNFTP+NGKPIR+M+SHRDPSLRKSGA NIFIKNLDKAID+KALHDTFS
Sbjct: 74 SAQDATRALELLNFTPVNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFS 133
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG ILSCKVATD +GQSKGYGFVQF+ EESAQ AIEK+NGMLLNDKQV+VG F+R+QER
Sbjct: 134 AFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQER 193
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D SKF NVYVKNL E+TT+++L+K FG YG I+SAVVMRD +GKSKCFGFVNFE +
Sbjct: 194 DLSGGVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELA 253
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
DDAA+AVEALNGKK D+KEWYVG+AQKKSERE EL+ +FEQ K +K+QG NLY+KNL
Sbjct: 254 DDAAKAVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNL 313
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD++DDEKL++LF+ +G+ITSCKVM+DP G SRGSGFVAFSTPEEA+RA+ EMN KMV S
Sbjct: 314 DDAVDDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGS 373
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+RR RLQA FAQMR + TV +PMY PG +
Sbjct: 374 KPLYVALAQRKEERRVRLQAAFAQMR-TPVGPTVPTSLPMYHPGPGL 419
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 289/397 (72%), Positives = 350/397 (88%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD++TR+SLGY YVN++ +AAR
Sbjct: 31 FPATSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAAR 90
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NG+PIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KAL+DTF FGNILS
Sbjct: 91 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 150
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD +G+SKGYGFVQ++ +E+A AIEKLNGML+NDK+VYVG F+RKQERD
Sbjct: 151 CKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERDNSPGNV 210
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NV+VKNLSE+TTE+DL++ FG++GTITS VVMR+GDG+SKCFGFVNFE+ D+AA AV
Sbjct: 211 KFNNVFVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAV 270
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKFDDKEWYVG+AQKKSERE+ELK +FE+N++E ADK+Q NLY+KNLDD++DDE
Sbjct: 271 QDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQNTNLYLKNLDDTVDDE 330
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ FG+ITSCKVMRD +G SRGSGFVAF + E+ASRAL EMN KMV SKPLYVAL
Sbjct: 331 KLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVAL 390
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
AQRKEDR+ARLQAQF+Q+RPV MA TV PRM M+PPG
Sbjct: 391 AQRKEDRKARLQAQFSQLRPVPMAPTVGPRMAMFPPG 427
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 297/405 (73%), Positives = 348/405 (85%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+ GGA TTSLYVGDLEANVTDSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN
Sbjct: 110 HAGGAAQQPLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVN 169
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+SN +AARA+E LNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LHDT
Sbjct: 170 YSNPMDAARAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDT 229
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFG ILSCKVA D GQSKG+GFVQ++ EESAQ A++ LNGML+NDK VYVG FLRKQ
Sbjct: 230 FSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQ 289
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD +K+KF NV+VKNLSESTT+EDL K F EYGTITSAVVM DGKS+CFGFVNFE
Sbjct: 290 ERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFE 349
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ DDAARAVE LNGKK +DKEWYVG+AQKKSERE++LK +FEQ+MK+AADK+QG NLY+K
Sbjct: 350 SPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLK 409
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD I D++L++LFS FG ITSCK+MRD +G+S+GSGFV+FST EEAS+AL EMNGKM+
Sbjct: 410 NLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMI 469
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
KPLYVA AQRKE+R+A LQAQF+QMRPV M ++ PR+PMYPP
Sbjct: 470 SGKPLYVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPP 514
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 289/400 (72%), Positives = 349/400 (87%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVN++ +AAR
Sbjct: 122 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 181
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NG+PIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KALHDTF FGNILS
Sbjct: 182 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFGNILS 241
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SKGYGFVQ++ +E+A AIEKLNGML+NDK+VYVG F+RKQERD
Sbjct: 242 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGSV 301
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNL+E+TTE+DL++ FG++GTITS VVMRDGDG+SKCFGFVNFE+ D+AA AV
Sbjct: 302 KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 361
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKF DKEWYVG+AQKKSERE+ELK +FE+N++EAADK+Q NLY+KNLDD++DDE
Sbjct: 362 QDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 421
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ FG+ITSCKVMRD +G SRGSGFVAF + ++ASRAL EMN KMV +KPLYVAL
Sbjct: 422 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 481
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
AQRKEDR+ARLQAQF+QMRPV MA TV PRM M PPG +
Sbjct: 482 AQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 521
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 293/403 (72%), Positives = 345/403 (85%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A TTSLYVGDLEA+VTDSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNFSN +
Sbjct: 31 AQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMD 90
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARALEMLNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LHDTFSAFG
Sbjct: 91 AARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGA 150
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVATD GQSKG+GFVQ++ EE AQ A++ LNGML+NDK VYVG FLRKQERD
Sbjct: 151 ILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSF 210
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K++F NV+VKNLSESTT+EDL K F EYG ITSAVVM DGKS+CFGF+NFE+ DDA
Sbjct: 211 DKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAV 270
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAVE LNGKK +DKEWY G+AQKKSERE++LK +FEQ+MK+AADK+QG NLY+KNLDD I
Sbjct: 271 RAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 330
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++L++LFS FG ITSCKVMRD +G+S+GSGFVAFST EEAS+A+ EMNGKM+ KPLY
Sbjct: 331 SDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLY 390
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
VA AQRKE+R+A LQAQF+QMRPV + ++ PR+PMYPP A +
Sbjct: 391 VAFAQRKEERKAMLQAQFSQMRPVPITPSMTPRLPMYPPMAPL 433
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/400 (71%), Positives = 348/400 (87%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL+ +V D+QL+D+F Q+G VVSVRVCRD+++R+SLGY YVN++ +AAR
Sbjct: 29 FPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAAR 88
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALEMLNFTP+NG+PIR+MYS+RDPSLRKSG NIFIKNLDK+ID+KAL+DTF FGNILS
Sbjct: 89 ALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILS 148
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SKGYGFVQ++ +E+A AIEKLNGML+NDK+VYVG F+RKQERD
Sbjct: 149 CKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERDNSPGNV 208
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNL+E+TTE+DL++ FG++G ITS VVMRDGDG+SKCFGFVNFE+ D+AA AV
Sbjct: 209 KFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAV 268
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGKKF DKEWYVG+AQKKSERE+ELK +FE+N++EAADK+Q NLY+KNLDD++DDE
Sbjct: 269 QDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDDE 328
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ FG+ITSCKVMRD +G SRGSGFVAF + ++ASRAL EMN KMV +KPLYVAL
Sbjct: 329 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVAL 388
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
AQRKEDR+ARLQAQF+QMRPV MA TV PRM M PPG +
Sbjct: 389 AQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 428
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 293/400 (73%), Positives = 346/400 (86%), Gaps = 1/400 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F +TSLYVGDLE NV+++QLY+LF Q+GQVVS+RVCRDL TRRSLGY YVN+++AQ+A R
Sbjct: 25 FVSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATR 84
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNF+ LNG PIR+M+SHRDPS+RKSG NIFIKNLDK ID+KALHDTFSAFG ILS
Sbjct: 85 ALELLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILS 144
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +GQSKGYGFVQF+ EESA AIEK+NGMLLNDKQV+VG F+R+QERD S
Sbjct: 145 CKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVS 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NVYVKNL E+TTE+DL+ FG YGTI+SAVVMRD DGKSKCFGFVNFE+ D+AA+AV
Sbjct: 205 KFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAV 264
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EALNGKK D+KEWYVG+AQKKSERE EL+ +FEQ KE +K+QG NLY+KNLDD++DDE
Sbjct: 265 EALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDE 324
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRDP G SRGSGFVAFS+PEEA+RA+ EMNGKMV SKPLYVAL
Sbjct: 325 KLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVAL 384
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
AQRKE+RRARLQA FAQMR +++ V +PMY PG +
Sbjct: 385 AQRKEERRARLQAAFAQMR-TSVSPAVPTSLPMYHPGPGM 423
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/402 (73%), Positives = 347/402 (86%), Gaps = 1/402 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A TTSLYVGDLE +V+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNF+N +
Sbjct: 34 AQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLD 93
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARALE+LNF PLN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K+LH+TFS+FG
Sbjct: 94 AARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGT 153
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D GQSKG+GFVQ++ EE+AQ AI+ LNGML+NDK V+VG FLRKQERD
Sbjct: 154 ILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSF 213
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K+KF NV+VKNLSESTT+EDL K FGEYG ITSAVVM DGKS+CFGF+NFEN D A+
Sbjct: 214 DKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAAS 273
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV+ LNGKK +DKEWYVG+AQKKSERE+ELK +FEQ +K+AADK+QG NLY+KNLDDSI
Sbjct: 274 RAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSI 333
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++L++LFS FG ITSCKVMRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLY
Sbjct: 334 GDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 393
Query: 378 VALAQRKEDRRARLQAQFAQMRP-VAMASTVAPRMPMYPPGA 418
VA AQRKEDR+A LQAQF+QMRP V M T+APR+PMYPP A
Sbjct: 394 VAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMA 435
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/397 (71%), Positives = 357/397 (89%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +V D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVN++N +AAR
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGKPIR+MYS+RDPS RKSG GNIFIKNLDK+ID+KAL+DTF AFGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ATD +G+S+GYGFVQF+ +ESAQ AI+KLNGML+NDK+V+VG F+RKQ+R+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF+NVYVKNLS++ T+++L++ FG+YGTITSAVVMRD DGKS+CFGFVNFEN+D AA+AV
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F+DKE YVG+AQKKSERE+ELK +FE+N++E A+KFQ NLY+KNL+++IDDE
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+A+RAL EMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
AQRKEDR+A+LQAQF+QMRPVAMA +V PRMPM+PPG
Sbjct: 392 AQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPG 428
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 283/397 (71%), Positives = 357/397 (89%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +V D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVN++N +AAR
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGKPIR+MYS+RDPS RKSG GNIFIKNLDK+ID+KAL+DTF AFGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ATD +G+S+GYGFVQF+ +ESAQ AI+KLNGML+NDK+V+VG F+RKQ+R+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF+NVYVKNLS++ T+++L++ FG+YGTITSAVVMRD DGKS+CFGFVNFEN+D AA+AV
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F+DKE YVG+AQKKSERE+ELK +FE+N++E A+KFQ NLY+KNL+++IDDE
Sbjct: 272 QELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQNTNLYLKNLEENIDDE 331
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+A+RAL EMNGKMV SKPLYVAL
Sbjct: 332 KLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVAL 391
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
AQRKEDR+A+LQAQF+QMRPVAMA +V PRMPM+PPG
Sbjct: 392 AQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPG 428
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/416 (70%), Positives = 352/416 (84%), Gaps = 2/416 (0%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MAQ Q Q G F +TSLYVGDLE+ V+++QLY++F+Q+GQVVS+RVCRDL
Sbjct: 1 MAQAPVQQQAPAASGPAPPNFVSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLI 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++NAQ+A RALE+LNF +NGKPIR+M+SHRDPS+RKSG NIFIKNLD
Sbjct: 61 TRRSLGYAYVNYNNAQDATRALELLNFNAVNGKPIRIMFSHRDPSIRKSGTANIFIKNLD 120
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K+ID+KALHDTF+AFG ILSCKVATD +GQSKGYGFVQF+ EESAQ AIEK+NGMLLNDK
Sbjct: 121 KSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDK 180
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QV+VG F+R+QERD SKF NVYVKNL++STT+++L+K F YG I+SAVVMRD +G
Sbjct: 181 QVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEG 240
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSKCFGFVNFE++DDAA+AVEALNGKKFD+KEWYVG+AQKKSERE EL+ +FEQ KE
Sbjct: 241 KSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERI 300
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+K+QG NLY+KNLDD+IDDEKL+++FS +G+I SCKVMRDP G SRGSGFVAFS+P+EA+
Sbjct: 301 EKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEAT 360
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
RA+ EMNGKMV SKPLYVALAQRKE+RR RLQA FAQ PV A V +PMY P
Sbjct: 361 RAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPVGPA--VPTSLPMYHP 414
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/340 (85%), Positives = 320/340 (94%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARAL++LNFTP NGKPIRVMYSHRDPS+RKSGAGNIFIKNLDKAIDHKALHDTFSAFG+
Sbjct: 5 AARALDVLNFTPXNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGS 64
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D +GQSKGYGFVQFDNEESA KAIEKLNGMLLNDKQVYVG FLRKQERD +
Sbjct: 65 ILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVV 124
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+KSKF NV+VKNLSE+TTEEDL K+F E+GT+TS VVMRD DGKS+CFGFVNFEN+DDAA
Sbjct: 125 DKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAA 184
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV+ LNGK DDKEWYVGKAQKKSERE+ELKH+FEQ MKEAADK+QGANLYIKNLDDSI
Sbjct: 185 RAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSI 244
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+KLK+LF+PFG+ITSCKVMRDP+GISRGSGFVAFSTP+EASRAL+EMNGKMVVSKPLY
Sbjct: 245 GDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLY 304
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
VALAQRKEDRRARLQAQF+Q+R V M ++VAPRMP+YPPG
Sbjct: 305 VALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPG 344
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 167/289 (57%), Gaps = 17/289 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + L+D F+ G ++S +V D S+ +S GYG+V F N + A +A
Sbjct: 37 GAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALD-SSGQSKGYGFVQFDNEESALKA 95
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
+E LN LN K + V RD + KS N+F+KNL + + L+ FS FG
Sbjct: 96 IEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGT 155
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
+ S V D +G+S+ +GFV F+N + A +A++ LNG L++DK+ YVG +K ER+ E+
Sbjct: 156 LTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVEL 215
Query: 198 ------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+K + N+Y+KNL +S ++ L++ F +GTITS VMRD +G S+
Sbjct: 216 KHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGS 275
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
GFV F D+A+RA+ +NGK K YV AQ+K +R L+ QF Q
Sbjct: 276 GFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQ 324
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+++ +LY+ +L+ ++ D +L +LF G + S +V RD S G G+V FS E
Sbjct: 227 ADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRD-PNGISRGSGFVAFSTPDE 285
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RAL +N + KP+ V + R
Sbjct: 286 ASRALVEMNGKMVVSKPLYVALAQR 310
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/404 (71%), Positives = 350/404 (86%), Gaps = 1/404 (0%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G QF +TSLYVGDLE NV+++QLY++F+Q+GQVVS+RVCRDL TRRSLGY YVN++N
Sbjct: 15 GPAPTQFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNN 74
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
AQ+A RALE+LNFT +NGKPIR+M+SHRDPS+RKSG NIFIKNLDK+ID+KALHDTF+A
Sbjct: 75 AQDATRALELLNFTGVNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAA 134
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGNILSCKVATD +GQSKGYGFVQF+ EESAQ AIEK+NGMLLNDKQV+VG F+R+QERD
Sbjct: 135 FGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERD 194
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
SKF NVYVKNL++ TT+++L+K FG +G I+SAVVMRD DGKSKCFGFVNFE+ D
Sbjct: 195 QAGGVSKFNNVYVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPD 254
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DAA+AVEAL GKKFD+KEWYVG+AQKKSERE EL+ +FEQ KE +K+QG NLY+KNLD
Sbjct: 255 DAAKAVEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLD 314
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D++DDEK+++LF+ +G+ITSCKVMRD G S+GSGFVAFS+P+EA+RA+ EMNGKMV +K
Sbjct: 315 DTVDDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNK 374
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
PLYVALAQRKE+RR RLQA FAQMR + V +PMY PGA
Sbjct: 375 PLYVALAQRKEERRMRLQAAFAQMR-THVGPAVPTSLPMYHPGA 417
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 291/396 (73%), Positives = 343/396 (86%), Gaps = 2/396 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+LF+Q GQV+SVRVCRD+S+RRSLGY YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 339
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST L EMNGKM+ KPLYVA AQRK
Sbjct: 340 LFSNYGKITSCKIMRDANGVSKGSGFVAFST--LPFIQLTEMNGKMISGKPLYVAFAQRK 397
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
EDR+A LQAQF+Q+RPV M ++APR+PMYPP A +
Sbjct: 398 EDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAPL 433
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/397 (73%), Positives = 345/397 (86%), Gaps = 1/397 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
TTSLYVGDLE +V+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVNFSN +AARAL
Sbjct: 45 TTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E+LNF LN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LH+TFS+FG ILSCK
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VA D GQSKG+GFVQ++ EE+AQ AI+ LNGML+NDK V+VG FLRKQERD +K+KF
Sbjct: 165 VAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKF 224
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
NV+VKNLSESTT+EDL K FGEYG+ITSAVVM DGKS+CFGF+NFEN D A+RAV+
Sbjct: 225 NNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQE 284
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNGKK +DKEWYVG+AQKKSERE+ELK +FEQ++K+AADK+QG NLY+KNLDDSI D++L
Sbjct: 285 LNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQL 344
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LFS FG ITS KVMRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQ
Sbjct: 345 RELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQ 404
Query: 383 RKEDRRARLQAQFAQMRP-VAMASTVAPRMPMYPPGA 418
RKEDR+A LQAQF+QMRP V M T+APR+PMYPP A
Sbjct: 405 RKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMA 441
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 288/394 (73%), Positives = 345/394 (87%), Gaps = 2/394 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AARALEM
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEM 102
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFSAFGNILSCKVA
Sbjct: 103 LNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVA 162
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
T+++G+SKGYGFVQ++ +ESAQ AI +LNGMLLNDK+VYVG F+RKQER+ KF N
Sbjct: 163 TEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNN 222
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNLSESTTE++L++ FG +G ITS +V+R DGKS+CFGFVNFEN DDA AVE LN
Sbjct: 223 VYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLN 282
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLK 323
GKKFDDKE YVG+AQKKSERE++LK FE++ KE AD+ QG NLY+KNLD S+ DDEKLK
Sbjct: 283 GKKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLK 342
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF+ FG+ITSCKVMRD +G+++GSGFVAF + E+A+RAL+ MNGKMV SKPLYVALAQR
Sbjct: 343 ELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQR 402
Query: 384 KEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
KE+RRARLQAQF+QMRPV M VAPRMPMYPPG
Sbjct: 403 KEERRARLQAQFSQMRPV-MPPPVAPRMPMYPPG 435
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 287/393 (73%), Positives = 344/393 (87%), Gaps = 2/393 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AARALEML
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
NFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL+DTFSAFGNILSCKVAT
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVAT 163
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
+++G+SKGYGFVQ++ +ESAQ AI +LNGMLLNDK+VYVG F+RKQER+ KF NV
Sbjct: 164 EMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNV 223
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
YVKNLSESTTE++L++ FG +G ITS +V+R DGKS+CFGFVNFEN DDA AVE LNG
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNG 283
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLKQ 324
KKFDDKE YVG+AQKKSERE++LK FE++ KE AD+ QG NLY+KNLD S+ DDEKLK+
Sbjct: 284 KKFDDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDDEKLKE 343
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF+ FG+ITSCKVMRD +G+++GSGFVAF + E+A+RAL+ MNGKMV SKPLYVALAQRK
Sbjct: 344 LFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRK 403
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
E+RRARLQAQF+QMRPV M VAPRMPMYPPG
Sbjct: 404 EERRARLQAQFSQMRPV-MPPPVAPRMPMYPPG 435
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/399 (71%), Positives = 347/399 (86%), Gaps = 8/399 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F +TSLYVGDL+ NV+++QLYDLFNQ+GQV+S+RVCRDL TRRSLGY YVN++N Q+A R
Sbjct: 1 FVSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATR 60
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGK +R+M+SHRDPS+RKSG NIFIKNLD+AID+KALHDTF +FGNILS
Sbjct: 61 ALELLNFTPVNGKAVRIMFSHRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFGNILS 120
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD NGQSKGYGFVQF+ EESAQ AI+K+NGML+ +KQV+VG F+R+QER+
Sbjct: 121 CKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQERE---QNG 177
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NV+VKNL ESTT+++L++ FG +G ITSAVVMRD DGKSKCFGFVNFEN D+AA+AV
Sbjct: 178 KFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAV 237
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LNGKK +DKEWYVG+AQKKSERE EL+ ++EQ KE D++QGANLY+KNLDD +DDE
Sbjct: 238 VGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGANLYLKNLDDDVDDE 297
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+++F+ FGSITSCKVMRD G S+GSGFVA+S PEEA+RA +EMNGKM+ SKP+YVA+
Sbjct: 298 RLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAM 357
Query: 381 AQRKEDRRARLQAQFAQMR-PVAMASTVAPRMPMYPPGA 418
AQRKE+RRA+LQAQFAQMR PV +A+T MPMY PGA
Sbjct: 358 AQRKEERRAKLQAQFAQMRSPVGVATT----MPMYHPGA 392
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/396 (73%), Positives = 347/396 (87%), Gaps = 1/396 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL+ +V D+QL+D+F+Q+G VVSVRVCRD++TR SLGY YVNFS+ +AARA+E
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
MLNFTP+NGKPIR+MYS+RDPS RKSGA NIFIKNLDK+ID+KAL DTFSAFG ILSCKV
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKV 161
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
AT+++G+SKGYGFVQ++ +ESAQ AI +LNGMLLNDK+VYVG F+RKQER+ KF
Sbjct: 162 ATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFN 221
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNLSESTTE++L++ FG++G ITS +V+R DGKS+CFGFVNFEN DDAARAVE L
Sbjct: 222 NVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDL 281
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKL 322
NGKK DDKE YVG+AQKKSERE++LK +FE++ KE ADK QG NLY+KNLD S+ DDEKL
Sbjct: 282 NGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKL 341
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+LF+ FG+ITSCKVMRD +G+++GSGFVAF + E+ASRAL+ MNGKMV SKPLYVALAQ
Sbjct: 342 KELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQ 401
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
RKE+RRARLQAQF+QMRPV M VAPRMPMYPPG
Sbjct: 402 RKEERRARLQAQFSQMRPVVMPPPVAPRMPMYPPGV 437
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/406 (69%), Positives = 339/406 (83%), Gaps = 1/406 (0%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG N SLYVGDL+ NVTDSQLYD F ++ QVVSVRVCRD +T SLGYGYVN+
Sbjct: 30 GGGDGVNHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNY 89
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
SN ++A +A++ LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+TF
Sbjct: 90 SNTEDAEKAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETF 149
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S G I+SCKVA D GQS+GYGFVQFD E+SA+ AIEKLNG +LNDKQ++VG FLRK+E
Sbjct: 150 SGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEE 209
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R++ +K KFTNVYVKNLSE TT+++L+ +FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN
Sbjct: 210 RESAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFEN 269
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+DAARAVEALNGKKFDDKEWYVGKAQKKSERELEL ++EQ +A +KF G NLY+KN
Sbjct: 270 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKN 329
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDD++ DEKL++LF+ FG+ITSCKVMRDPSG S+GSGFVAFS EASR L EMNGKMV
Sbjct: 330 LDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVG 389
Query: 373 SKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
KPLYVALAQRKE+RRA+LQAQF+QMRP A V PRMP++P GA
Sbjct: 390 GKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFPGGA 434
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/405 (66%), Positives = 343/405 (84%), Gaps = 3/405 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
NQF +TSLYVGDL+ NVT+ QLYD+FNQ+ V+S+RVCRDL ++RSLGY YVN++ Q+A
Sbjct: 32 NQFFSTSLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDA 91
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
+RALEMLNF+ +NGKPIR+M+SHRDPS+RKSG NIFIKNLDK+ID+KAL+DTF+ FGNI
Sbjct: 92 SRALEMLNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNI 151
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D +GQS+GYGFVQF+ E++AQ AI+++NGMLL +KQV+VG F+R+QERD
Sbjct: 152 LSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGG 211
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+KF NVYVKNL ++TT++DL++ FGE+G I+SAVVMRD +GKSKCFGFVNFEN+DDAA
Sbjct: 212 IAKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAAL 271
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE LNGKK DDKEWYVG+AQKKSERE EL+ +++Q KE +DK+QG NLY+KNLDD+ID
Sbjct: 272 AVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTID 331
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+KL++LF FG+I SCKVMRDP G S+GSGFVAFST EEA+RA+ EMNG+MV +KP+YV
Sbjct: 332 DDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYV 391
Query: 379 ALAQRKEDRRA--RLQAQFAQMR-PVAMASTVAPRMPMYPPGAWI 420
ALAQ++++RR QAQFA R PV + VA +PM+ PGA +
Sbjct: 392 ALAQKRDERRRFNAAQAQFAPFRVPVGLGPAVASSVPMFHPGAGM 436
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/405 (66%), Positives = 343/405 (84%), Gaps = 3/405 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
NQF +TSLYVGDL+ NVT+ QLYD+FNQ+ V+S+RVCRDL ++RSLGY YVN++ Q+A
Sbjct: 32 NQFFSTSLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISKRSLGYAYVNYNTGQDA 91
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
+RALEMLNF+ +NGKPIR+M+SHRDPS+RKSG NIFIKNLDK+ID+KAL+DTF+ FGNI
Sbjct: 92 SRALEMLNFSLVNGKPIRIMFSHRDPSIRKSGMANIFIKNLDKSIDNKALYDTFAQFGNI 151
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D +GQS+GYGFVQF+ E++AQ AI+++NGMLL +KQV+VG F+R+QERD
Sbjct: 152 LSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGPFVRRQERDLTGG 211
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+KF NVYVKNL ++TT++DL++ FGE+G I+SAVVMRD +GKSKCFGFVNFEN+DDAA
Sbjct: 212 VTKFNNVYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAAL 271
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE LNGKK DDKEWYVG+AQKKSERE EL+ +++Q KE +DK+QG NLY+KNLDD+ID
Sbjct: 272 AVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQERKERSDKYQGVNLYLKNLDDTID 331
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+KL++LF FG+I SCKVMRDP G S+GSGFVAFST EEA+RA+ EMNG+MV +KP+YV
Sbjct: 332 DDKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYV 391
Query: 379 ALAQRKEDRRA--RLQAQFAQMR-PVAMASTVAPRMPMYPPGAWI 420
ALAQ++++RR QAQFA R PV + VA +PM+ PGA +
Sbjct: 392 ALAQKRDERRRFNAAQAQFAPFRVPVGLGPAVASSVPMFHPGAGM 436
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/391 (71%), Positives = 325/391 (83%), Gaps = 2/391 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDLEA+VTDSQLY+ F GQV+SVRVCRD+ RS G YVNF+N +AARALE+
Sbjct: 40 SLYVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALEL 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF PLNGKPIRVMYS+RDPS R+SG+ NIFIKNLDKAIDHK LHDTFSAFGNILSCKVA
Sbjct: 99 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKG+GFVQ+D E+AQ AI+ LNGML+NDK VYVG FLRKQER+ ++K+KF N
Sbjct: 159 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 218
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNLSESTT+EDL K FG YG ITSAV+M DGKS+CFGF+NF++ DDAARAVE LN
Sbjct: 219 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 278
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKK +DKEWYVG+AQKKSERE+ELK +FEQ+MK+AADK+QG NLY+KNLDDSI D++L +
Sbjct: 279 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGDDQLCE 338
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS +G ITSCK+MRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLYVA AQRK
Sbjct: 339 LFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRK 398
Query: 385 EDRRARLQAQFA-QMRPVAMASTVAPRMPMY 414
EDR+A LQ F Q + V MP Y
Sbjct: 399 EDRKAMLQPGFGFQQQLVPGMRPGGAHMPNY 429
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/403 (68%), Positives = 336/403 (83%), Gaps = 3/403 (0%)
Query: 1 MAQV-QAQ-GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD 58
MAQV QAQ + + ++ + SLYVGDL+ +V++S+LY++FNQ+GQVVS+RVCRD
Sbjct: 1 MAQVMQAQQAPTIATPISGSSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRD 60
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
L T++SLGY YVN+ Q+A++ALE+LNFT + GKPIR+MYSHRDPS+RKSGA NIFIKN
Sbjct: 61 LMTKKSLGYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGAANIFIKN 120
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
L+K+ID+KALHDTFSAFG ILSC+V D G SKGYGFVQF+ EESAQ AIEK+NGML+N
Sbjct: 121 LEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLIN 180
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
D+QV V F+RKQERD +K+ F NVYVKNL+E+TT+EDL+K F +G I+SAVVMRD
Sbjct: 181 DRQVSVAPFIRKQERDMASSKN-FNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDA 239
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
DGKSKCFGFVNFEN DDAA AVE LNGK ++KEWYVG+AQKKSERE ELK +FEQ KE
Sbjct: 240 DGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKE 299
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
+KFQG NLY+KN+DDSIDDEKL++LF+ FG++TSCKVM+ P G S GSGFV FS PEE
Sbjct: 300 KEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEE 359
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV 401
A +A+ +MNGKMV SKPLYVALAQRKE+RRARLQAQFAQM+ V
Sbjct: 360 AMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQIV 402
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/408 (67%), Positives = 331/408 (81%), Gaps = 7/408 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG F SLYVGDLE NV + QLYDLF+Q+ Q+ S+RVCRD + R SLGY YVNF
Sbjct: 28 GGGP----FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNF 83
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+NAQ+A+ A+E+LNFTPLNGKPIR+M+S RDPS+RKSG GN+FIKNLD +ID+KALHDTF
Sbjct: 84 ANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+AFG +LSCKVA D +GQSKGYGFVQFDNEE+AQ AI++LNGML+NDKQVYVG F+R+QE
Sbjct: 144 AAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQE 203
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R+ KFTNVYVKNLSE+ T+EDL+K FG YGTITSA VM+D +GKS+CFGFVNF+N
Sbjct: 204 REQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQN 263
Query: 253 SDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
D AA AVE LNG +D+ YVG+AQ+K+ERE ELK + EQ +K QGANLY+K
Sbjct: 264 PDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLK 323
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDS DEKLK LFS FG+ITSCKVM D +G S+GSGFV+FSTPEEAS+AL EMNGK++
Sbjct: 324 NLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLI 383
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMR-PVAMASTVAPRMPMYPPGA 418
KPLYVA+AQRKE+R+A LQAQFAQ+R P MA A +P+Y PGA
Sbjct: 384 GRKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAPLPA-GIPLYHPGA 430
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 276/408 (67%), Positives = 331/408 (81%), Gaps = 7/408 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG F SLYVGDLE NV + QLYDLF+Q+ Q+ S+RVCRD + R SLGY YVNF
Sbjct: 28 GGGP----FANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNF 83
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+NAQ+A+ A+E+LNFTPLNGKPIR+M+S RDPS+RKSG GN+FIKNLD +ID+KALHDTF
Sbjct: 84 ANAQDASNAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+AFG +LSCKVA D +GQSKGYGFVQFDNEE+AQ AI++LNGML+NDKQVYVG F+R+QE
Sbjct: 144 AAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQE 203
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R+ KFTNVYVKNLSE+ T+EDL+K FG YGTITSA VM+D +GKS+CFGFVNF+N
Sbjct: 204 REQTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQN 263
Query: 253 SDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
D AA AVE LNG +D+ YVG+AQ+K+ERE ELK + EQ +K QGANLY+K
Sbjct: 264 PDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLK 323
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDS DEKLK LFS FG+ITSCKVM D +G S+GSGFV+FSTPEEAS+AL EMNGK++
Sbjct: 324 NLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLI 383
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMR-PVAMASTVAPRMPMYPPGA 418
KPLYVA+AQRKE+R+A LQAQFAQ+R P MA A +P+Y PGA
Sbjct: 384 GRKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAPLPA-GIPLYHPGA 430
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/394 (69%), Positives = 333/394 (84%), Gaps = 1/394 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ NVTDSQLYD F ++ QVVSVRVCRD +T SLGYGYVN+SN +A +A++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+ FS G I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQS+GYGFVQFD E+SA+ AIEKLNG +LNDKQ++VG FLRK+ER++ +K KFTN
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNLSE+TT+++L+ +FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAARAVEALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKKFDDKEWYVGKAQKKSERELEL ++EQ + +KF G NLY+KNLDD++ DEKL++
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF+ FG+ITSCKVMRDPSG S+GSGFVAFS EASR L EMNGKMV KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
E+RRA+LQAQF+QMRP A V PRMP++ GA
Sbjct: 407 EERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGA 439
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/394 (69%), Positives = 333/394 (84%), Gaps = 1/394 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ NVTDSQLYD F ++ QVVSVRVCRD +T SLGYGYVN+SN +A +A++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+ FS G I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQS+GYGFVQFD E+SA+ AIEKLNG +LNDKQ++VG FLRK+ER++ +K KFTN
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNLSE+TT+++L+ +FG+YG+I+SAVVMRDGDGKS+CFGFVNFEN +DAARAVEALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GKKFDDKEWYVGKAQKKSERELEL ++EQ + +KF G NLY+KNLDD++ DEKL++
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF+ FG+ITSCKVMRDPSG S+GSGFVAFS EASR L EMNGKMV KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
E+RRA+LQAQF+QMRP A V PRMP++ GA
Sbjct: 407 EERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGA 439
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/384 (71%), Positives = 324/384 (84%), Gaps = 2/384 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A TTSLYVGDLE V+DSQLY+LF+Q GQVVSVRVCRD+++RRSLGY YVN+SN +
Sbjct: 28 AQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLD 87
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
AARALE+LNF LN KPIRVMYS+RDPS R+SG+ NIFIKNLDK ID+K LH+TFS+FG
Sbjct: 88 AARALEVLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGT 147
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D GQSKG+GFVQ+D EE+AQ AI+ LNGML+NDK V+VG F+RKQERD
Sbjct: 148 ILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQERDHSF 207
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K+KF NV+VKNLSESTT+EDL K FGEYG ITSAVVM DGKS+CFGF+NFEN D A+
Sbjct: 208 DKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAAS 267
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AV+ LNGKK +DKEWYVG+AQKKSERE+ELK +FEQ++K+AADK+QG NLY+KNLDDSI
Sbjct: 268 HAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 327
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D++L +LFS FG ITS KVMRD +G+S+GSGFVAFST EEAS+AL EMNGKM+ KPLY
Sbjct: 328 GDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLY 387
Query: 378 VALAQRKEDRRARLQAQFAQMRPV 401
VA AQRKEDR+A LQ ++PV
Sbjct: 388 VAFAQRKEDRKAMLQVTV--LKPV 409
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/400 (68%), Positives = 321/400 (80%), Gaps = 1/400 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF SLYVGDLE NV + QLYDLF+Q+ QVVSVRVCRD + R SLGYGYVNFSN Q+AA
Sbjct: 41 QFANLSLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAA 100
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
A++ LNFTPLNGKPIR+M+SHRDPS+RKSG GN+FIKNLD +D+K LH+TF+AFG +L
Sbjct: 101 NAMKALNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVL 160
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCKVA D NGQSKGYGFVQF+NEESA++AI L+GM LNDKQVYVG F+R+QER
Sbjct: 161 SCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGS 220
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
KFTNVYVKNLSE+ T EDL+K FG YGTITSA+VM+D GKS+ FGFVNF++ D AA A
Sbjct: 221 PKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAA 280
Query: 260 VEALNGKK-FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
VE LNG DDK WYVG+AQ+KSERE ELK +FEQ ++ + ANLY+KNLDD+I+
Sbjct: 281 VEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNIN 340
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D KLK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL EMNGKM+ KPLYV
Sbjct: 341 DVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYV 400
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
A+AQRKE+R+ARLQA FA +R + + +P Y GA
Sbjct: 401 AIAQRKEERKARLQAHFALVRAPGALAPLPSGIPGYNAGA 440
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 270/405 (66%), Positives = 325/405 (80%), Gaps = 1/405 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A A QF +SLYVGDLE NV + QL+DLF+Q+ QVVS+RVCRD + R SLGY YVNFS
Sbjct: 13 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 72
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N Q+AA A+E+LNFTPLNGK IR+M SHRDPS+RKSG N+FIKNLD +ID+KAL +TF+
Sbjct: 73 NPQDAANAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 132
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+FG +LSCKVA D NGQSKGYGFVQF+NEE+AQ AI +LNGML+NDK+V+VG F+R QER
Sbjct: 133 SFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 192
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
KFTNVYVKNLSE+T++EDL+K F YG+ITSA+VM+D GKSK FGFVNF++
Sbjct: 193 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSP 252
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D AA AVE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + ANLY+KNL
Sbjct: 253 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 312
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDEKLK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL MNGKM+
Sbjct: 313 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 372
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
KPLYVA+AQR+E+R+ARLQA F Q++ + S + +P Y PGA
Sbjct: 373 KPLYVAVAQRREERKARLQAHFTQIQAPGL-SPMPSGLPGYHPGA 416
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/419 (64%), Positives = 329/419 (78%), Gaps = 1/419 (0%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
++ V Q G A F SLYVGDL+ + + QLYDLF Q+ V+S+RVCRD +
Sbjct: 16 LSPVAVQQSTAMTGHTAAAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQA 75
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
R SLGY YVNF++ Q+A ALE LNFTPLNGKPIR+M+SHRDPS+RKSG N+FIKNLD
Sbjct: 76 RRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLD 135
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+ID+KAL DTF+AFG +LSCK+A D NGQSKGYGFVQF+ EE+AQ AI++LNGML+NDK
Sbjct: 136 PSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDK 195
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
QVYVG F+R QER+ KFTNVYVKNLSE+TT++DL+ FG+YG+ITSAVVMRD G
Sbjct: 196 QVYVGLFVRHQERNXGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASG 255
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
SKCFGFVNF++SD AA AVE LNG F DDK WYVGKAQ+KSERE EL+ +FEQ K
Sbjct: 256 MSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNK 315
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
+KF+G NLY+KNLDDS++DEKL +LFS FG+ITSCKVM DP G+S+GSGFVAF TPEEA
Sbjct: 316 FEKFKGXNLYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEA 375
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
+RAL MNGKM+ KPLYVA+AQRKE+R+ARLQAQFAQ+R + + +P + GA
Sbjct: 376 TRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTPLQSGVPGFHSGA 434
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 269/405 (66%), Positives = 325/405 (80%), Gaps = 1/405 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A A QF +SLYVGDLE NV + QL+DLF+Q+ QVVS+RVCRD + R SLGY YVNFS
Sbjct: 23 GTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFS 82
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N Q+A+ A+E+LNFTPLNGK IR+M SHRDPS+RKSG N+FIKNLD +ID+KAL +TF+
Sbjct: 83 NPQDASNAMELLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFA 142
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+FG++LSCKVA D NGQSKGYGFVQF+NEE+AQ AI +LNGML+NDK+V+VG F+R QER
Sbjct: 143 SFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 202
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
KFTNVYVKNLSE+T++EDL+K F YG ITSA+VM+D GKSK FGFVNF++
Sbjct: 203 IEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSP 262
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D AA AVE LNG F+DK WYVG+AQ+K ERE ELK +FEQ +K + ANLY+KNL
Sbjct: 263 DSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 322
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDEKLK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL MNGKM+
Sbjct: 323 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 382
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
KPLYVA+AQR+E+R+ARLQA F Q++ + S + +P Y PGA
Sbjct: 383 KPLYVAVAQRREERKARLQAHFTQIQAPGL-SPMPSGLPGYHPGA 426
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 270/406 (66%), Positives = 326/406 (80%), Gaps = 1/406 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A F SLYVGDL+ + + QLYDLF Q+ V+S+RVCRD + R SLGY YVNF+
Sbjct: 3 GHTAAAGFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFA 62
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ Q+A ALE LNFTPLNGKPIR+M+SHRDPS+RKSG N+FIKNLD +ID+KAL DTF+
Sbjct: 63 SPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPSIDNKALLDTFA 122
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG +LSCK+A D NGQSKGYGFVQF+ EE+AQ AI++LNGML+NDKQVYVG F+R QER
Sbjct: 123 AFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQER 182
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ KFTNVYVKNLSE+TT++DL+ FG+YG+ITSAVVMRD G SKCFGFVNF++S
Sbjct: 183 NRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSS 242
Query: 254 DDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
D AA AVE LNG F DDK WYVGKAQ+KSERE EL+ +FEQ K +KF+G NLY+KN
Sbjct: 243 DSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKN 302
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDDS++DEKLK+LFS FG+ITSCKVM DP G+S+GSGFVAF TPEEA+RAL MNGKM+
Sbjct: 303 LDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIG 362
Query: 373 SKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
KPLYVA+AQRKE+R+ARLQAQFAQ+R + + +P + GA
Sbjct: 363 RKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTPLQSGVPGFHSGA 408
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/417 (65%), Positives = 331/417 (79%), Gaps = 10/417 (2%)
Query: 12 NGGGANAN---------QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
+GGGA + +F SLYVGDL+ + + QLYDLF Q+ V+S+RVCRD + R
Sbjct: 452 SGGGAAVHGDDGTYCGGRFANASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARR 511
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
SLGY YVNF++ Q+A ALE LNFTPLNGKPIR+M+SHRDPS+RKSG N+FIKNLD +
Sbjct: 512 ASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDPS 571
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+KAL DTF+AFG +LSCK+A D NGQSKGYGFVQF+ EE+AQ AI++LNGML+NDKQV
Sbjct: 572 IDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQV 631
Query: 183 YVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
YVG F+R QER+ KFTNVYVKNLSE+TT++DL+ FG+YG+ITSAVVMRD G S
Sbjct: 632 YVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMS 691
Query: 243 KCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
KCFGFVNF++SD AA AVE LNG F DDK WYVGKAQ+KSERE EL+ +FEQ K +
Sbjct: 692 KCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFE 751
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
KF+G NLY+KNLDDS++DEKLK+LFS FG+ITSCKVM DP G+S+GSGFVAF TPEEA+R
Sbjct: 752 KFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATR 811
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
AL MNGKM+ KPLYVA+AQRKE+R+ARLQAQFAQ+R + + +P + GA
Sbjct: 812 ALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAMTPLQSGVPGFHSGA 868
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/407 (66%), Positives = 330/407 (81%), Gaps = 7/407 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG F ++SLYVGDL+ +V + QL +LF Q+ QVVS+RVCRD + R+SLGY YVNF
Sbjct: 29 GGG-----FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNF 83
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
S+ Q+A A+E LNFTP+NGKPIR+M S+RDPS+RKSG N+FIKNLD +ID+KAL DTF
Sbjct: 84 SSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTF 143
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+AFG +LSCKVA D NGQSKGYGFVQF++EESA+ +IEKLNGMLLNDKQVYVGHF+R QE
Sbjct: 144 AAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQE 203
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R N S+FTNVYVKNL E+TT++DL+ F +GTITSA+VM D +GKSKCFGFVNF+N
Sbjct: 204 R-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQN 262
Query: 253 SDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+D AA AVE L+G DDK YVG+AQ+K+ERE ELK +FEQ K +K QGANLYIK
Sbjct: 263 TDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIK 322
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD IDDEKLK+LFS +G+ITSCKVM D G+S+GSGFVAFS+P+EA++AL EMNGKM
Sbjct: 323 NLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMK 382
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
KPLYVA+AQRKE+R+ARLQAQFAQ+R S++ +P + PGA
Sbjct: 383 GRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGA 429
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/407 (66%), Positives = 330/407 (81%), Gaps = 7/407 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG F ++SLYVGDL+ +V + QL +LF Q+ QVVS+RVCRD + R+SLGY YVNF
Sbjct: 29 GGG-----FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNF 83
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
S+ Q+A A+E LNFTP+NGKPIR+M S+RDPS+RKSG N+FIKNLD +ID+KAL DTF
Sbjct: 84 SSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTF 143
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+AFG +LSCKVA D NGQSKGYGFVQF++EESA+ +IEKLNGMLLNDKQVYVGHF+R QE
Sbjct: 144 AAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQE 203
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R N S+FTNVYVKNL E+TT++DL+ F +GTITSA+VM D +GKSKCFGFVNF+N
Sbjct: 204 R-IRANGSQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQN 262
Query: 253 SDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+D AA AVE L+G DDK YVG+AQ+K+ERE EL+ +FEQ K +K QGANLYIK
Sbjct: 263 TDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIK 322
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD IDDEKLK+LFS +G+ITSCKVM D G+S+GSGFVAFS+P+EA++AL EMNGKM
Sbjct: 323 NLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMK 382
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
KPLYVA+AQRKE+R+ARLQAQFAQ+R S++ +P + PGA
Sbjct: 383 GRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGA 429
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/398 (64%), Positives = 318/398 (79%), Gaps = 1/398 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
QF SLYVGDLE NV + QL+DLF+Q+ VVS RVCRD + SLGY YVNFSN Q+AA
Sbjct: 29 QFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAA 88
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+A+E+LNFTPLNGKPIR+M+SHRDP+ R+SG N+FIKNLD ID+KAL++TF++FG +L
Sbjct: 89 KAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVL 148
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCKVA D NGQSKGYGF+QF+NEE AQ AI +LNGML+ND++VYVG F+R+ ER
Sbjct: 149 SCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLERIEANGS 208
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
KFTNVYVKNLSE+T++EDL+K F YG ITSA+VM+D +GKS+ FGFVNF++ D AA A
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAA 268
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE LNG F DK WYVG+AQ+K ERE ELK +FEQ +K + ANLY+KNL D+ID+
Sbjct: 269 VEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDE 328
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E+LK+LFS FGSITSCKVM D G+S+GSGFVAFSTPEEASRAL EMNGKM+ KPLYVA
Sbjct: 329 ERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVA 388
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
+AQR+E+R ARLQA F+Q++ + T+ +P Y PG
Sbjct: 389 IAQRREERMARLQAHFSQIQAPGLP-TLPSGLPGYHPG 425
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/394 (62%), Positives = 320/394 (81%), Gaps = 8/394 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F +T+LYVGDL+ +V ++Q++D+F Q+G V+SVR+CRD+ T+RSLGY YVN++N Q+A+R
Sbjct: 12 FASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASR 71
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+E LNF P+NGKP+R+M+S+RDPS+RKSG+GN+F+KNLDK+ID+KALHD FS +G ILS
Sbjct: 72 AIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILS 131
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+A D++ SKG+GFVQFD E++A AIEK+NG L+DKQ++VG F+R+QERD S
Sbjct: 132 CKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRRQERDPP--AS 189
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF NV+VKNLSE TT+EDLQK FG +G I+SAVVM++ DGKSKCFGFVNFEN +DA +AV
Sbjct: 190 KFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAV 249
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E L+G F DKE YV +AQKK+ERE ELK +FE K+ DK NLY+KNLDD IDDE
Sbjct: 250 EDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDK-SPTNLYLKNLDDGIDDE 308
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK +FS FG++TSCKVMRDP G S+GSGFVAFST + A RA+ +MNGKM+ SKPLYVA+
Sbjct: 309 KLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAM 368
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
AQ+KE+R+A+L+AQFA PV P P+Y
Sbjct: 369 AQKKEERKAKLEAQFASRGPVNF-----PPPPLY 397
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/397 (63%), Positives = 315/397 (79%), Gaps = 4/397 (1%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT+SLYVGDLE +VT++QLY+ F+ +G VVS+RVCRDL TRRSLGY YVNF + +AA A
Sbjct: 35 GTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHA 94
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+++LNF +NGKPIRV+YS RDP++R+SG GNIFIKNLDKAID+KAL DTF+ FG I S
Sbjct: 95 IDVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSA 154
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KVA D G SKGYGFVQF+ +E+AQ AI+ +NGM LNDKQVYVG F R+ ER + ++K
Sbjct: 155 KVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAER-SNTGEAK 213
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
F NVYVKNLSE+ ++E L++ F E+G +TS V+MRD +GKSK FGFV +E + AA AVE
Sbjct: 214 FNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVE 273
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+G D+K W V +AQKK+ERE ELK +F+Q +E +K GANLYIKNL+D DDEK
Sbjct: 274 KLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEK 333
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++LF FG+ITSC+VMRD SG+SRGS FVAFS+P+EA+RA+ EMNGKMV +KPLYVALA
Sbjct: 334 LRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALA 393
Query: 382 QRKEDRRARLQAQFAQMRPVA-MASTVAPRMPMYPPG 417
QRKE+RR RLQAQFAQ P A M +AP MP PPG
Sbjct: 394 QRKEERRMRLQAQFAQRMPGAGMPGGMAPYMP--PPG 428
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/400 (63%), Positives = 313/400 (78%), Gaps = 2/400 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q G SLYVGDLE NV ++QL+ LF ++G + S+RVCRD T RSLGY YVNF N Q+AA
Sbjct: 2 QSGNASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRD-ETNRSLGYAYVNFVNPQDAA 60
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
A+E LNFTPLNGK IRVM+S+RDPS+RKSG N+FIKNLD +ID+K LHDTF+AFG +L
Sbjct: 61 NAMEHLNFTPLNGKSIRVMFSNRDPSIRKSGYANVFIKNLDISIDNKTLHDTFAAFGFVL 120
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KVA D GQSKGYGFVQFDNEESAQ AI++LNGML+NDK+VYVG F+ +QER
Sbjct: 121 SSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQERAQVDGS 180
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
KFTNVYVKN SE+ T+EDL++ F YGTITSAVVM+D DGKS+CFGFVNFE+ D A A
Sbjct: 181 PKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAA 240
Query: 260 VEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
VE LNG DDK YVG+AQ+K+ERE ELK +FE +K+ G NLY+KNLD +I+
Sbjct: 241 VERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNIN 300
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+KLK+LFS FG+ITSCKVM +P+G S+G GFVAFS P A+RAL EMNGKM+ +PLYV
Sbjct: 301 DDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYV 360
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
A+AQRKE+R+A L+AQF+QM + + + +P+Y PGA
Sbjct: 361 AVAQRKEERKALLEAQFSQMHALYAITHLPTGIPVYHPGA 400
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/402 (63%), Positives = 315/402 (78%), Gaps = 9/402 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLY GDL+ + T++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVNF +AARA++
Sbjct: 32 TSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAID 91
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF +NGKPIR+MYS RDP+LRKSG GNIFIKNLDK ID+KAL+DTF+ FGNI+S KV
Sbjct: 92 ALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFGNIVSAKV 151
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATDL GQSKGYGFVQFD EE AQ AIEK+NGMLLNDKQVYVG F ++ ER + F
Sbjct: 152 ATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNERGG--GPTTFN 209
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL ES TEE L++ F ++G +TS VVM+D +GKSK FGFV +E+++ A ++VE L
Sbjct: 210 NVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEEL 269
Query: 264 NG-KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+G K +DK W V +AQKKSERE ELK +F+ +E +K GANLYIKNL+D++DD KL
Sbjct: 270 DGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKL 329
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LF+ FG+ITSC+VMRD +G SRGS FVAFS+ +EA+RA+ EMNGKM KPLYVALAQ
Sbjct: 330 RELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQ 389
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPMY---PPGAWIW 421
RKEDRR RLQAQFAQ + +A+ P M Y PPGA ++
Sbjct: 390 RKEDRRLRLQAQFAQRQ---VAAGGMPNMGPYGMPPPGAPMY 428
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/378 (64%), Positives = 301/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALA 407
Query: 382 QRKEDRRARLQAQFAQMR 399
QRKEDRRA LQA F+Q+R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/378 (64%), Positives = 301/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQAQFAQMR 399
QRKEDRRA LQA F+Q+R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/378 (64%), Positives = 301/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQAQFAQMR 399
QRKEDRRA LQA F+Q+R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/387 (64%), Positives = 310/387 (80%), Gaps = 4/387 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDLE++ T++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVNFS AQ+AARA++
Sbjct: 43 TSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAID 102
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LNF +NGKPIR++YS RDP++RKSG GNIFIKNLDK ID AL DTF+ FGNI+S KV
Sbjct: 103 VLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFGNIVSAKV 162
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD G SKGYGF+QFD E +A++AIEK+NGM LNDK VYVG F R+ ER T ++KF
Sbjct: 163 ATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAERGT--TETKFN 220
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV+VKNL + T+E+L+K F +G +TS ++ +D DGKSK FGFV +E +DA++AVE L
Sbjct: 221 NVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEEL 280
Query: 264 NGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+GK +DK+W V +AQKK+ERE ELK +FE +E +K GANLYIKNL+D DDE L
Sbjct: 281 DGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEDGADDETL 340
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LF FG+ITSC+VMRD SG+SRGS FVAFS+PEEA+RA+ E+NGKMV +KPLYVALAQ
Sbjct: 341 RELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQ 400
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAP 409
RKEDRR RLQAQFAQ R + +AP
Sbjct: 401 RKEDRRMRLQAQFAQ-RSMGPGGVMAP 426
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/385 (63%), Positives = 313/385 (81%), Gaps = 5/385 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A +F +SLYVGDL+ NV D+QLYDLF+Q+ V+SVRVCRD T+ SLGYGYVN+SNA
Sbjct: 17 TSAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNA 76
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++AA A+E LN+ PLNGKPIR+M+SHRDP +RK+G N+FIKNL+ +ID+KALH+TFS F
Sbjct: 77 RDAANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVF 136
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+LSCKVA D NG SKG+GFVQFDN++SA+ AIEKL+G L+NDK+VYVG+F+R QER +
Sbjct: 137 GNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSS 196
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
KFTNVYVKNLSES T EDL++ F +G ITS +M+D +G SK FGFVNF++SD
Sbjct: 197 ----PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDS 252
Query: 256 AARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
AA AVE LNG +D K +VG+AQKKSERE ELK FEQ + +KFQGANLY+KN+D
Sbjct: 253 AATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNID 312
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
S+++EKLK+LFS FG+ITSCKVM D G S+G GFVAF+TPEEAS+A+ EMNGK++ K
Sbjct: 313 KSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQK 372
Query: 375 PLYVALAQRKEDRRARLQAQFAQMR 399
P+YV++AQRKE+R+A+LQA F ++
Sbjct: 373 PVYVSVAQRKEERKAQLQAHFPAIQ 397
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/402 (60%), Positives = 313/402 (77%), Gaps = 6/402 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V + QL DLFNQ+ V +VRVCRDL TRRSLGY YVNF+N ++A+RA++
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDL-TRRSLGYAYVNFANPEDASRAMD 116
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFSAFG ILSCKV
Sbjct: 117 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKV 176
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + + +
Sbjct: 177 AMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPR 236
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNFE+ + AA AVE
Sbjct: 237 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVE 296
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKSERE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 297 KMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 356
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S+PEEASRAL EMNGKM+ KPLYVA A
Sbjct: 357 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFA 416
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPRMP---MYPPGAWI 420
QRKE+RRA LQ F +R S + MP +PPG +
Sbjct: 417 QRKEERRAHLQTLFTHIRSPGTMSPIPSPMPGFHHHPPGGPM 458
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/383 (65%), Positives = 304/383 (79%), Gaps = 4/383 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
TSLY GDL++N T++QLY+LF+ +G VVS+RVCRDL TRRSLGY YVNF +AAR
Sbjct: 17 LSATSLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAAR 76
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+++LNF +NGKPIR+MYS RDP+LRKSG GNIFIKNLDK ID+KAL+DTFS FGNI+S
Sbjct: 77 AIDVLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVS 136
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
KVA D G SKGYGFVQF +E+AQ+AI+K+NGMLLNDKQVYVG F R+ ER +
Sbjct: 137 AKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGERGG--GPT 194
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F NVYVKNL ES E+ L++ FG G +TS V+M+DG+GKSK FGFV FE S+ A+ AV
Sbjct: 195 TFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAV 254
Query: 261 EALNG-KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
E L+G K +DK W V +AQKK+ERE ELK +F+ +E +K GANLYIKNL+D++DD
Sbjct: 255 EKLDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDD 314
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL++LF+ FG+ITSC+VMRD SG SRGS FVAFS+ +EA+RA+ EMNGKM +KPLYVA
Sbjct: 315 AKLRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVA 374
Query: 380 LAQRKEDRRARLQAQFAQMRPVA 402
LAQRKEDRR RLQAQFAQ R VA
Sbjct: 375 LAQRKEDRRMRLQAQFAQ-RAVA 396
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/371 (64%), Positives = 295/371 (79%), Gaps = 3/371 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQ 392
QRKEDRRA LQ
Sbjct: 408 QRKEDRRAHLQ 418
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 150/287 (52%), Gaps = 14/287 (4%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +LD + L D F N++S +V D N +S GY ++ F N A +A+E L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L D+ + + RD S N+++KNL S + L ++F +GTI S
Sbjct: 110 NYTPLFDRPIRI----MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC 165
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D G+SK +GFV FE + A A++ LNG +DK+ +VG ++ ER +
Sbjct: 166 KVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD----- 220
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
E + N+Y+KNL I +++L++ F FG I+S VMRD SG SR GFV
Sbjct: 221 -----ENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
F E A+ A+ +MNG + LYV AQ+K +R L+ +F Q R
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/401 (59%), Positives = 315/401 (78%), Gaps = 12/401 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA---R 80
+SLYVGDL+ +VT++QL+++F+Q+G V S+RVCRD TRRSLGY YVN+++ + A R
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAER 97
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+TPL G+P+R+M+SHRDP+ RKSG GNIFIKNLD+++D+KALHDTFSAFGNILS
Sbjct: 98 ALDQLNYTPLVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNILS 157
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA DL G+SKGYGFV F+ +ESA+ AIEK+NGMLL K+VYVG FLR+ ER ++ ++
Sbjct: 158 CKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSD-SEV 216
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNV+VKNL E+ ++++++ F E+GT+ S ++MRD +GKSK FGF+NFE + AA AV
Sbjct: 217 KFTNVFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAV 276
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ALNGK + KE YVG+AQKK+ERE L+ +FE+ E K+QG NLY+KNL D IDDE
Sbjct: 277 QALNGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDE 336
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L+ FS FG+ITS KVM D +G SRG GFV +++PEEA+RA+ EMNG+M+ KP+YVAL
Sbjct: 337 TLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVAL 396
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP----MYPPG 417
AQR++ RRA+L+ Q+ Q VAM PR P M+PPG
Sbjct: 397 AQRRDVRRAQLEQQYQQR--VAMPP--GPRGPMAPGMFPPG 433
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/402 (58%), Positives = 312/402 (77%), Gaps = 6/402 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 382 QRKEDRRARLQAQFAQMR-PVAMASTVAPR--MPMYPPGAWI 420
QRKE+R+A LQ+ F Q+R P M+ +P +PPG +
Sbjct: 418 QRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM 459
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/402 (58%), Positives = 312/402 (77%), Gaps = 6/402 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 382 QRKEDRRARLQAQFAQMR-PVAMASTVAPR--MPMYPPGAWI 420
QRKE+R+A LQ+ F Q+R P M+ +P +PPG +
Sbjct: 404 QRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM 445
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/402 (58%), Positives = 312/402 (77%), Gaps = 6/402 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 164 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 223
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 224 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 283
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 284 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 344 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 382 QRKEDRRARLQAQFAQMR-PVAMASTVAPR--MPMYPPGAWI 420
QRKE+R+A LQ+ F Q+R P M+ +P +PPG +
Sbjct: 404 QRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM 445
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/431 (57%), Positives = 315/431 (73%), Gaps = 16/431 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T+SLYVGDLE +VT++QLY+ F+ +G VVS+RVCRDL TRRSLGY YVNF ++ +AA A+
Sbjct: 31 TSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAI 90
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
++LNF +NGKPIRV+YS RDP++R+SG GNIFIKNLDKAID+KAL DTF+ FG I S K
Sbjct: 91 DVLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGTITSAK 150
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VA D G SKGYGFVQF+ E+AQ AI+ +NGM LNDKQVYVG F R+ +R T+ ++KF
Sbjct: 151 VAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQ-GEAKF 209
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
NVYVKNLSE+ ++E L++ F E+G +TS V+M+D +GKSK FGFV FE+ + AA AVE
Sbjct: 210 NNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVEN 269
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
L+G D+K W V +AQKK+ERE ELK +FE +E +K GANLYIKNL++ DDEKL
Sbjct: 270 LDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKL 329
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LF+ FG+ITSC+VMRD SG SRGS FVAFS+P+EA+RA+ EMNGKMV +KPLYVALAQ
Sbjct: 330 RELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQ 389
Query: 383 RKEDRRA-RLQAQFAQMRPVA----MASTVAPRMPMYP----------PGAWIWLSAAAC 427
RKE+ A R A + + A A + P P Y P + W SA
Sbjct: 390 RKEEPHAGRWHAGYGPVHATAGCSGRADVLRPTAPGYDAAAAATGLRFPTSHAWRSATGY 449
Query: 428 SWYEARWGSHA 438
+ Y R+ A
Sbjct: 450 ARYVPRYADAA 460
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/315 (72%), Positives = 270/315 (85%)
Query: 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDN 161
RDPS R+SG+ NIFIKNLDK ID+K LHDTFSAFG ILSCKVA D GQSKG+GFVQ++
Sbjct: 1 RDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEK 60
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
EESAQ A++ LNGML+NDK VYVG FLRKQERD +K+KF NV+VKNLSESTT++DL K
Sbjct: 61 EESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVK 120
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F YGTITSAVVM DGKS+CF FVNFE+ DDAARAVE LNGKK +DKEWYVG+AQKK
Sbjct: 121 VFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKK 180
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
SERE++LK +FEQ+MK+AADK+QG NLY+KNLDD I D++L++LFS FG ITSCK+MRD
Sbjct: 181 SEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQ 240
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV 401
+G+S+GSGFV+FST EEAS+AL EMNGKM+ KPLYVA AQRKEDR+A LQAQF+QMRPV
Sbjct: 241 NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPV 300
Query: 402 AMASTVAPRMPMYPP 416
M ++ PR+PMYPP
Sbjct: 301 PMTPSMTPRLPMYPP 315
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 165/289 (57%), Gaps = 17/289 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L+ + + L+D F+ G ++S +V D +S G+G+V + + A A
Sbjct: 9 GSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMD-DIGQSKGFGFVQYEKEESAQSA 67
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
++ LN +N KP+ V RD S K+ N+F+KNL ++ L FS +G
Sbjct: 68 MKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSGYGT 127
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V ++G+S+ + FV F++ + A +A+E+LNG +NDK+ YVG +K ER+ ++
Sbjct: 128 ITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDL 187
Query: 198 ------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+K + N+Y+KNL + T++ L++ F +G ITS +MRD +G SK
Sbjct: 188 KRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGS 247
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
GFV+F ++A++A+ +NGK K YV AQ+K +R+ L+ QF Q
Sbjct: 248 GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ 296
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+++ +LY+ +L+ +TD QL +LF+ G++ S ++ RD S G G+V+FS +E
Sbjct: 199 ADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRD-QNGVSKGSGFVSFSTREE 257
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A++AL +N ++GKP+ V ++ R
Sbjct: 258 ASQALTEMNGKMISGKPLYVAFAQR 282
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/410 (57%), Positives = 309/410 (75%), Gaps = 12/410 (2%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N + RAL
Sbjct: 38 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 97
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDPSLRK+G+GN+FIKNLD +ID+KALHDTFSAFGNILSCK
Sbjct: 98 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFGNILSCK 157
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
+A D +G SKGYGFV ++ EE+A AI+ ++GMLLNDK+VYVG + ++ER +I ++
Sbjct: 158 IALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKIEQIRA 217
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNVYVKNL ES +E ++ F ++G ITSA+V D +GKSK FGF+NFEN +DA +AV
Sbjct: 218 KFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAV 277
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN + + K YV +AQKK+ERE EL+ Q+EQ E K+QG NLYIKNLDD IDDE
Sbjct: 278 DTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 337
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+Q FS +G ITS KVM D G S+G GFV FS+P+EA++A+ EMNG+M+ SKP+YVAL
Sbjct: 338 KLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 397
Query: 381 AQRKEDRRARLQAQFA---QMR-----PVAMASTVAPRMPMY--PPGAWI 420
AQRKE RR++L+AQ A QMR P+ A P PM+ PPG ++
Sbjct: 398 AQRKEVRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAPMFYAPPGQFM 447
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
S ++YV L S TE L + F G + S V RD +S + +VNF N D R
Sbjct: 36 SPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGER 95
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E+LN K + S+R+ L+ K N++IKNLD SID
Sbjct: 96 ALESLNYTLIKGKPCRI----MWSQRDPSLR------------KTGSGNVFIKNLDTSID 139
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ L FS FG+I SCK+ D SG S+G GFV + T E A A+ ++G ++ K +YV
Sbjct: 140 NKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYV 199
Query: 379 ALAQRKEDRRARLQ 392
+++R+A+++
Sbjct: 200 GRHIPRKERQAKIE 213
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/410 (58%), Positives = 307/410 (74%), Gaps = 12/410 (2%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N + RAL
Sbjct: 43 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERAL 102
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDPSLRK+G+GN+FIKNLD +ID+KALHDTFSAFGNILSCK
Sbjct: 103 ESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDPSIDNKALHDTFSAFGNILSCK 162
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
+A D +G SKGYGFV ++ EE+A AI+ +NGMLLNDK+VYVG + K+ER +I ++
Sbjct: 163 IALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRA 222
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNVYVKNL ES +E+ + ++G ITSA+V D +GKSK FGFVNFEN +DA +AV
Sbjct: 223 KFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAV 282
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ALN + K YV +AQKK+ERE EL+ Q+EQ E K+QG NLYIKNLDD IDDE
Sbjct: 283 DALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 342
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+Q FS +G ITS KVM D S+G GFV FS+P+EA++A+ EMNG+M+ SKP+YVAL
Sbjct: 343 KLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 402
Query: 381 AQRKEDRRARLQAQFA---QMR-----PVAMASTVAPRMPMY--PPGAWI 420
AQRKE RR++L+AQ A QMR P+ A P PM+ PPG ++
Sbjct: 403 AQRKEIRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAPMFYAPPGQFM 452
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/427 (55%), Positives = 309/427 (72%), Gaps = 3/427 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVG+L+ VT++ L+++FN +G V SVRVCRD TRRSLGY YVN+ N + RAL+
Sbjct: 74 VSLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALD 133
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + GKP R+M+S RDP LRK+G GNIFIKNLD+ ID+KALHDTF+AFG +LSCKV
Sbjct: 134 QLNYSQIRGKPCRIMWSQRDPGLRKTGQGNIFIKNLDQGIDNKALHDTFAAFGTVLSCKV 193
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
ATD +G SKGYGFV +D+ E+A+ AI+ +NGMLLNDK+V+VG + ++ER ++I+ KS
Sbjct: 194 ATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSH 253
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL EE+ + F ++G ITSAV+ +D +G SK FGFVNFEN +DA RAVE
Sbjct: 254 FTNLYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVE 313
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ K+ K +VG+AQKKSERE EL+ Q+EQ E A K+QG+NLYIKNL+D +DDEK
Sbjct: 314 ELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEK 373
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA+RA+ EMN K+V +KPLYVALA
Sbjct: 374 LRAEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALA 433
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARWGSHAKFL 441
QRK+ R+ +L++Q AQ R + A +P P GA A + Y +
Sbjct: 434 QRKDVRKQQLESQIAQ-RNNQLRLAAAQGIPNMPYGAAPMFYQPAAAGYPPGQRPVMGYP 492
Query: 442 CADSSAR 448
A AR
Sbjct: 493 PAPGPAR 499
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/390 (60%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRDL TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLD++ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D NG SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E TEE L+ F +YG ITS +M DGKSK FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFV 237
Query: 249 NFENSDDAARAVEALNGKK-FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A AVEALNGK+ D K YVG+AQKK+ER+ ELK +FE E +++QG N
Sbjct: 238 AFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ FSPFG+ITS KVM + S+G GFV FS+PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFSPFGTITSAKVMME-DNRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G++V SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLTSQYMQ 386
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 169/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V +D S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + + L F +
Sbjct: 156 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERD 194
G I S K+ + +G+SKG+GFV F++ E+A+ A+E LNG +++ K +YVG +K ER
Sbjct: 216 GKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + D +S
Sbjct: 276 QELKRRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMME-DNRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 335 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRM 388
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 162/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS G +LS +V DL +S GY +V F A++A++
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ + + + +RD + KS NV++KNL S + + +F +G I S
Sbjct: 72 MNFDLIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D +G SK +GFV+FE + A +++E +NG + K+ YVG+ + ERE EL
Sbjct: 128 CKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + +E+L+ +F +G ITS K+M G S+G GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVV-SKPLYVALAQRKEDRRARLQAQFAQMR 399
AF +PE A A+ +NGK ++ KPLYV AQ+K +R+ L+ +F ++
Sbjct: 238 AFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELKRRFEALK 286
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/423 (54%), Positives = 310/423 (73%), Gaps = 11/423 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM---PMYPPGAWIWLSAAACSWYE 431
PLYVALAQRKE+R+A L Q+ Q MAS P P PP + +++A +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAAIPPAQNR 417
Query: 432 ARW 434
A +
Sbjct: 418 AAY 420
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G S+G GFV+F E+A +A+ +MNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/390 (60%), Positives = 301/390 (77%), Gaps = 8/390 (2%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG N + SLYVGDL A++T++ L++ F+ G V+S+RVCRDL TRRSLGY YV
Sbjct: 1 MNPGGPN---YQMASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D GQSKGYGFV F+ EESA +IEK+NGMLLN+K+V+VG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E TEE L + F +YG+ITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FEN D A RAV+ LN K+ D K YVG+AQKK+ER++ELK +FEQ E ++ G N
Sbjct: 237 AFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVN 296
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+P+G+ITS KVM D G S+G GFV FS P+EA++A+ EMN
Sbjct: 297 LYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMN 355
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G++V SKPLYVALAQRKE+R++ L +Q+ Q
Sbjct: 356 GRIVGSKPLYVALAQRKEERKSHLASQYIQ 385
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 171/295 (57%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V +D +S GYG+V+F + A +
Sbjct: 97 GVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQD-EKGQSKGYGFVHFETEESANTS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN K + V + R ++ G N+++KN + + +ALH+ F +
Sbjct: 156 IEKVNGMLLNEKKVFVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALHEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G+I S +V +G+S+G+GFV F+N ++A++A+++LN L+D K +YVG +K ER
Sbjct: 216 GSITSHRVMMK-DGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQ 274
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL ++ +E L+K F YGTITSA VM D +G+
Sbjct: 275 MEL-KRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGR 332
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F D+A +AV +NG+ K YV AQ+K ER+ L Q+ Q +
Sbjct: 333 SKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQRV 387
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 161/290 (55%), Gaps = 17/290 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L + FS+ G +LS +V DL +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N + + + + +RD + KS NV++KNL + + + +F +G I
Sbjct: 71 TMNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V +D G+SK +GFV+FE + A ++E +NG ++K+ +VG+ + ERE EL
Sbjct: 127 SCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELG- 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + + +E L ++F +GSITS +VM G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMK-DGKSRGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVV-SKPLYVALAQRKEDRRARLQAQFAQMR 399
VAF P+ A RA+ E+N K + K LYV AQ+K +R+ L+ +F Q++
Sbjct: 236 VAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQLK 285
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 170/289 (58%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/410 (55%), Positives = 305/410 (74%), Gaps = 7/410 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 ASAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNASAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/431 (54%), Positives = 309/431 (71%), Gaps = 19/431 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL VT++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPSGPN---YPMASLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + KPIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDAIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSC+VATD SKGYGFV F+ EE+A KAI K+NGMLLN+K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ + +K++ FTNVY+KN + ++ L F +YG ITSA VM D GK++ FGFV
Sbjct: 178 KEREKMLGDKARCFTNVYIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
+FE D A RAVE LNGK + YVG+AQKK+ER+ ELK FEQ +E +++QG NL
Sbjct: 238 SFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNL 297
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDD++DDE+L++ F PFG+ITS KVM D +G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 298 YVKNLDDALDDERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQF-----------AQMRP---VAMASTVAPRMPMY 414
++VVSKPLYVALAQRKEDR+A L +Q+ QM P +A+ P MP +
Sbjct: 358 RIVVSKPLYVALAQRKEDRKAHLASQYMHRIAGMRMQMGQMFPPGGTGVANYFVPTMPHH 417
Query: 415 PPGAWIWLSAA 425
G + AA
Sbjct: 418 QTGQRSYFPAA 428
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 299/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 170/289 (58%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 299/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/424 (54%), Positives = 309/424 (72%), Gaps = 10/424 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPG---AWIWLSAAACS 428
PLYVALAQRKE+R+A L Q+ Q A + P P P G A I + +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 429 WYEA 432
+Y A
Sbjct: 422 YYPA 425
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/384 (59%), Positives = 296/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 299/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/374 (59%), Positives = 289/374 (77%), Gaps = 2/374 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL +V ++QLY+ FN G + S+RVCRD TRRSLGY YVNF +A RAL+ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
NF P+NGKP R+M+S RDPSLR+SG GNIFIKNL+K ID+KA++DTFSAFGNILSCK+A
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIAL 140
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKFT 203
D NG SKGY FV F+ +E+A +AIEK+NGMLL+ K+V+VGHF+ ++ER +I +K+T
Sbjct: 141 DENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYT 200
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN + ++++ + F + G I S VVMRD GKS+ FGFV++E + A +AVE L
Sbjct: 201 NLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETL 260
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+FD + YV +AQKKSER L+ Q+EQ +E +FQG NLY+KNLDD IDD KL+
Sbjct: 261 NEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q F+ FG+ITS KVM D GISRG GFV FS+PEEA++A+ EMNG++++SKPLYVALAQR
Sbjct: 321 QEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQR 380
Query: 384 KEDRRARLQAQFAQ 397
KEDR+A+L AQ+ Q
Sbjct: 381 KEDRKAQLAAQYVQ 394
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 19/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + +YD F+ G ++S ++ D S GY +V+F + A RA
Sbjct: 105 GVGNIFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRA 163
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N L+GK + V + R + K G N+++KN I D F
Sbjct: 164 IEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQC 223
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+SC V D +G+S+G+GFV ++ E+AQKA+E LN + +++YV +K ER
Sbjct: 224 GKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSA 283
Query: 196 EINKS----------KF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ + +F N+YVKNL + + L++ F +GTITSA VM D G S+
Sbjct: 284 LLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISR 343
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K +R+ +L Q+ Q M
Sbjct: 344 GFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDRKAQLAAQYVQRM 396
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 155/291 (53%), Gaps = 15/291 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L ++ L++ F++ G I S +V D + +S GY +V F A++A++ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N +N K + +RD + +S N+++KNL + + + +F +G I S
Sbjct: 81 NFDPVNGKPCRIMW----SQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFGNILSC 136
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ D +G SK + FV+FE + A RA+E +NG K+ +VG + ER
Sbjct: 137 KIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERM------- 189
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
+ + A K+ NLY+KN D I D++ + LF G I SC VMRD SG SRG GFV+
Sbjct: 190 -EKIGNLAAKY--TNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVS 246
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAM 403
+ T E A +A+ +N K + +YVA AQ+K +R A L+ Q+ Q + M
Sbjct: 247 YETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMM 297
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQ 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+K L+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ++ +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/376 (60%), Positives = 295/376 (78%), Gaps = 5/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++T++ L++ F+ G V+S+RVCRDL TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF P+ G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDPIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D GQSKGYGFV F+ EESA +IEK+NGMLLN+K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN E TEE L+ F ++G ITS VM DGKS+ FGFV FE +DA AV+
Sbjct: 183 TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTK-DGKSRGFGFVAFEKPEDAEEAVQK 241
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ D K YVG+AQKK+ER++ELK +FEQ E ++ G NLY+KNLDD+IDDE+
Sbjct: 242 LNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTIDDER 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+P+G+ITS KVM D G S+G GFV FS P+EA++A+ EMNG++V SKPLYVALA
Sbjct: 302 LRKEFAPYGTITSAKVMLD-EGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALA 360
Query: 382 QRKEDRRARLQAQFAQ 397
QRKE+R++ L +Q+ Q
Sbjct: 361 QRKEERKSHLASQYIQ 376
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 169/295 (57%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V +D +S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQD-EKGQSKGYGFVHFETEESANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN K + V + R ++ G N+++KN + + +AL D F F
Sbjct: 147 IEKVNGMLLNEKKVYVGRFISRKEREKELGEKAKLFTNVYVKNFGEDLTEEALRDMFEKF 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S +V T +G+S+G+GFV F+ E A++A++KLNG L+D K +YVG +K ER
Sbjct: 207 GPITSHRVMTK-DGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQ 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL ++ +E L+K F YGTITSA VM D +G+
Sbjct: 266 MEL-KRRFEQLKMERLTRYHGVNLYVKNLDDTIDDERLRKEFAPYGTITSAKVMLD-EGR 323
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F D+A +AV +NG+ K YV AQ+K ER+ L Q+ Q +
Sbjct: 324 SKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQRV 378
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 161/290 (55%), Gaps = 17/290 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L + FS+ G +LS +V DL +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N + + + + +RD + KS NV++KNL + + + +F +G I
Sbjct: 62 TMNFDPIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V +D G+SK +GFV+FE + A ++E +NG ++K+ YVG+ + ERE EL
Sbjct: 118 SCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + + +E L+ +F FG ITS +VM G SRG GF
Sbjct: 177 -------EKAKLF--TNVYVKNFGEDLTEEALRDMFEKFGPITSHRVMTK-DGKSRGFGF 226
Query: 351 VAFSTPEEASRALLEMNGKMVV-SKPLYVALAQRKEDRRARLQAQFAQMR 399
VAF PE+A A+ ++NGK + K LYV AQ+K +R+ L+ +F Q++
Sbjct: 227 VAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQLK 276
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/414 (57%), Positives = 310/414 (74%), Gaps = 18/414 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSI+DE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMYPPG 417
G+++V+KPLYVALAQRKEDR+A L +Q+ Q MR M M+PPG
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMGQ-------MFPPG 403
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 295/383 (77%), Gaps = 4/383 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE +
Sbjct: 183 MGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA RAV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQ 397
PLYVALAQRKE+R+A L +Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTSQYMQ 384
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE E M A +F N+YIKN + +DDEKLK++F +G S +VM D
Sbjct: 177 KEREAE--------MGARAKEF--TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMK 284
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E+L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE L++LFS FG S KVMRD SG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLR 94
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 169/288 (58%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE LK+LF FG S KVMRDP+G S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 20 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 79
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 80 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 139
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 140 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 198
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 199 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 258
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 259 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 318
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 319 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 377
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 378 KPLYVALAQRKEERKAHLTNQYMQ 401
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/413 (55%), Positives = 306/413 (74%), Gaps = 11/413 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG+YG S VM D GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F+PFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM---PMYPPGAWIWLSA 424
PLYVALAQRKE+R+A L Q+ Q MAS P P PP + +++A
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAA 410
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+ F +G+ S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV+F E+A +A+ +MNGK + K ++V AQ+K +R+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/414 (57%), Positives = 310/414 (74%), Gaps = 18/414 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSI+DE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMYPPG 417
G+++V+KPLYVALAQRKEDR+A L +Q+ Q MR M M+PPG
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMGQ-------MFPPG 403
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLR 94
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVMKGKPIRIMWSQRDPSLR 94
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 296/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L+ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L D FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG + K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRVVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDIKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D I+DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGINDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG+ S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL + T++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/380 (60%), Positives = 295/380 (77%), Gaps = 4/380 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A
Sbjct: 29 HYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 88
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 89 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 148
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 149 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 207
Query: 199 KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K+K FTNVY+KN E +++L++ F ++G S VMRD GKSK FGFV++E +DA
Sbjct: 208 KAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDAN 267
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+I
Sbjct: 268 KAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 327
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLY
Sbjct: 328 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 386
Query: 378 VALAQRKEDRRARLQAQFAQ 397
VALAQRKE+R+A L Q+ Q
Sbjct: 387 VALAQRKEERKAHLTNQYMQ 406
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 34 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 93
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 94 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 149
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 150 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 205
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DD+ LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 206 -------GAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 258
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 259 SYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLK 306
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 119 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 176
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 177 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQF 236
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 237 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 296
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 297 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 354
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 355 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 408
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/440 (54%), Positives = 313/440 (71%), Gaps = 15/440 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D NG SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN E ++E L+ F +YG ITS VM DG S+ FGFV FE+ D A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLE 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG NLY+KNLDD+IDDE+
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPGAWIWLSAAACSWYE 431
QRKEDR+A L +Q+ Q MR M P +P PP + A
Sbjct: 362 QRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGSAGGYFVPTIPPAQRFYGPAQITQMRP 421
Query: 432 A-RWGSHAKFLCADSSARAA 450
+ RW + + +A +A
Sbjct: 422 SQRWTAQPPVRPSTQTAASA 441
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 28/207 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC--RDLSTRRSLGYGYVNFSNAQEAARA 81
T++YV + + +D L D+F + G++ S +V D S+R G+G+V F + A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSR---GFGFVAFEDPDAAERA 239
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPS----------------LRKSGAGNIFIKNLDKAID 124
LN L GKP+ V + + L + N+++KNLD ID
Sbjct: 240 CLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 299
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+ L F+ FG I S KV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 300 DERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 358
Query: 185 GHFLRKQERDTEINKSKFTNVYVKNLS 211
RK++R K+ T+ Y++ ++
Sbjct: 359 ALAQRKEDR-----KAHLTSQYMQRMA 380
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRA 362
A+LY+ +L I + L + FSP G + S +V RD I+R G +V F P +A RA
Sbjct: 2 ASLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRD--MITRRSLGYAYVNFQQPSDAERA 59
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
L MN M+ +P+ + +QR R
Sbjct: 60 LDTMNFDMIKGRPIRIMWSQRDPSLR 85
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSL KSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD ++KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F P +A RAL MN ++ KP+ + +QR
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 303/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G+++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + D+KLK++F +G+ITS KVM G SRG GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 182/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 297/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 20 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 79
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 80 ADAERALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 139
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 140 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 198
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 199 ELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKH 258
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 259 EDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 318
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 319 DDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 377
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 378 KPLYVALAQRKEERKAHLTNQYMQ 401
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 303/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G+++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + D+KLK++F +G+ITS KVM G SRG GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 182/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 303/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G+++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 166/290 (57%), Gaps = 16/290 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 127 SCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG- 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + + D+KLK++F +G+ITS KVM G SRG GF
Sbjct: 186 -------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGF 236
Query: 351 VAFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
VAF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 237 VAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 169/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL 388
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 303/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G+++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + D+KLK++F +G+ITS KVM G SRG GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 182/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSL KSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD ++KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLHKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F P +A RAL MN ++ KP+ + +QR
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/416 (56%), Positives = 307/416 (73%), Gaps = 17/416 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L+D F+ G V+S+RVCRDL TRRSLGY YV
Sbjct: 1 MNQGAPN---YPMASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLD++ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDLIRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D NG SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E +EE L+ F ++G ITS VM DGKSK FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A AV+ALNGK+ + K YVG+AQKK+ER+ ELK +FE E +++QG N
Sbjct: 238 AFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELKRRFEALKMERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-------SRGSGFVAFSTPEEAS 360
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + + S+G GFV FS+PEEA+
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEAT 357
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMP 412
+A+ EMNG++V SKPLYVALAQRKEDR+A L +Q+ Q MR M P P
Sbjct: 358 KAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRMANMRMHQMGHQFMPPGP 413
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 302/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L+ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G+++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 165/289 (57%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + D+KLK +F +G+ITS KVM G SRG GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 182/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L D F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 296/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+ VCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/423 (53%), Positives = 309/423 (73%), Gaps = 11/423 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM---PMYPPGAWIWLSAAACSWYE 431
PLYVALAQRKE+R+A L Q+ Q MAS P P PP + +++A +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAAIPPAQNR 417
Query: 432 ARW 434
A +
Sbjct: 418 AAY 420
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G S+G GFV+F E+A +A+ EMNGK + K ++V AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/437 (52%), Positives = 312/437 (71%), Gaps = 11/437 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM---PMYPPGAWIWLSAAACSWYE 431
PLYVALAQRKE+R+A L Q+ Q MAS P P PP + +++A +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAAIPPAQNR 417
Query: 432 ARWGSHAKFLCADSSAR 448
A + + S R
Sbjct: 418 AAYYPPGQIAQLSPSPR 434
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G S+G GFV+F E+A +A+ EMNGK + K ++V AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/390 (58%), Positives = 302/390 (77%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L+ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G+++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIIVTKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 165/289 (57%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + D+KLK +F +G+ITS KVM G SRG GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 238 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 182/329 (55%), Gaps = 39/329 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L D F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKDMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL------ 388
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AN+ + +++ Q+F P G+
Sbjct: 389 ---ANMRM---------QQMGQIFQPGGA 405
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/390 (59%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A +AV LNGK + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G++V SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLASQYMQ 386
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 166/289 (57%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 128 CKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + D+KLK++F +G+ITS KVM G SRG GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK + K +YV AQ+K +R+ L+ +F Q++
Sbjct: 238 AFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQLK 286
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 171/294 (58%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGA-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+S+G+GFV F++ ++A++A+ +LNG +++ K +YVG +K ER
Sbjct: 216 GTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + +G+S
Sbjct: 276 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 335 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 388
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E ++ L+ F +YG S VM D +GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA RAV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM D G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 174/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DD+KLK +FS +G+ S +VM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G SRG GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG YG S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFM 410
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDEKLK+LF +G S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G S+G GFV+F E+A +A+ +MNGK + + +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 TGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMK 284
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +PL + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLR 94
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/457 (53%), Positives = 319/457 (69%), Gaps = 21/457 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGPPN---YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RALE +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D G SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E ++E L++ F +YG ITS VM DG S+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A RA LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPG 417
G++V +KPLYVALAQRKEDR+A L +Q+ Q MR M P +P PP
Sbjct: 357 GRIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPA 416
Query: 418 AWIWLSAAACSWYEA-RWGSHAKFLCADSSARAAGSA 453
+ A + RW + +A++A SA
Sbjct: 417 QRFYGPAQMTQIRPSPRWTAQP---AVRPNAQSAASA 450
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/382 (59%), Positives = 296/382 (77%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ FG+YG S VM D GKSK FGFV+FE ++
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEE 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK+ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+LK+LF +G S KVM DP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F EEA++A+ EMNGK + K L+V AQ+K +R+A L+ +F Q++
Sbjct: 237 SFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQA 274
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + S++ N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 275 ELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPR 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
++ RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ D + +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PRDSERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S ++ RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ P ++ RAL MN ++ KP+ + +QR R
Sbjct: 59 YQQPRDSERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/409 (55%), Positives = 301/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + EE L+ F +YG S VM D GKS+ FGFV+FE +
Sbjct: 183 LGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN D +D+EKL+ +F+ +G+ S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SRG GFV+F E+A +A+ EMNGK + KP+YV AQ+K +R+A L+ +F QM+
Sbjct: 227 SGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMK 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/457 (53%), Positives = 319/457 (69%), Gaps = 21/457 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGPPN---YPMASLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RALE +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALEGMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TF+AFGNILSCKVA D G SKGYGFV F+ EE+A K+IEK+NGMLLN K+VYVG F+ +
Sbjct: 118 TFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E ++E L++ F +YG ITS VM DG S+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ D A RA LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPG 417
G++V +KPLYVALAQRKEDR+A L +Q+ Q MR M P +P PP
Sbjct: 357 GRIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTIPPA 416
Query: 418 AWIWLSAAACSWYEA-RWGSHAKFLCADSSARAAGSA 453
+ A + RW + +A++A SA
Sbjct: 417 QRFYGPAQMTQIRPSPRWTAQP---AVRPNAQSAASA 450
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/383 (59%), Positives = 294/383 (76%), Gaps = 4/383 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 TASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 IN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +
Sbjct: 183 LGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLD
Sbjct: 243 DANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SK
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQ 397
PLYVALAQRKE+R+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 172/289 (59%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 185
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN D +DDE+LK+LFS +G S KVM DPSG S+G GF
Sbjct: 186 K--------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F E+A++A+ +MNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 VSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A +A+E +NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MSTTASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/394 (55%), Positives = 299/394 (75%), Gaps = 3/394 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCK
Sbjct: 105 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD +G SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER ++I+ K+
Sbjct: 165 VATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+Y+KN+ T+E+ + F E G +TS+V+ RD +G+S+ FGFVN+E ++A +AV
Sbjct: 225 QFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K F ++ +V +AQKK+ERE EL+ EQ E K+QG NLY+KNLDD +DDE
Sbjct: 285 DNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDE 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITS KVMRD G+S+G GFV +S+PEEAS+A+ EMN KM+ SKPLYV+
Sbjct: 345 KLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSH 404
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
AQR+E RR +L++Q AQ R M A MP Y
Sbjct: 405 AQRREVRRQQLESQIAQ-RNQIMHQAAAGGMPGY 437
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFM 410
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDEKLK+LFS +G S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + + +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMK 284
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +PL + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLR 94
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/392 (55%), Positives = 298/392 (76%), Gaps = 2/392 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 48 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD+AID+KALHDTF+AFG +LSCK
Sbjct: 108 EQLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGTVLSCK 167
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +++ ++
Sbjct: 168 VATDETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRA 227
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKNL T+++ + F +YG +TSAV+ D +GKSK FGFVNFE D+A +AV
Sbjct: 228 QFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAV 287
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN + K+ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D +DD+
Sbjct: 288 DELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDD 347
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+L
Sbjct: 348 KLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 407
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
AQR+E RR +L++Q AQ + M A +P
Sbjct: 408 AQRREVRRQQLESQIAQRNQIRMQQAAAAGLP 439
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/441 (53%), Positives = 313/441 (70%), Gaps = 19/441 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG + SLYVGDL A+VT++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+
Sbjct: 1 MNSGGP---AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYI 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+D
Sbjct: 58 NFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKV D NG SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ +FTNVY+KN E E L+ F E+G S VM D G+S+ FGFV
Sbjct: 177 KEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF N DA RAV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG NL
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNL 296
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDDSIDDEKL++ F+P+G+ITS KVM D G SRG GFV FS+PEEA++A+ EMNG
Sbjct: 297 YVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP-MYPPGAWIWLSAA-- 425
++V +KPLYVALAQRKE+R+A L Q+ Q R ++ + P +P Y G+ ++++
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYIQ-RLASIRAIPGPAIPTTYQQGSGYYMTSVPQ 414
Query: 426 ACSWYEA--------RWGSHA 438
S+Y A RW S A
Sbjct: 415 VRSFYNAVPNLRPAPRWASQA 435
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/440 (53%), Positives = 315/440 (71%), Gaps = 25/440 (5%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG N + SLYVGDL ++VT++ L++ F+ G V+S+RVCRD+ T+RSLGY YV
Sbjct: 1 MNPGGPN---YPMASLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +N+ PL GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNYDPLKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFS FGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+V+VG F+ +
Sbjct: 118 TFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPR 177
Query: 191 QERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ + +FTNVYVKN E +++ L++ F +YG ITS VM DGKSK FGFV
Sbjct: 178 KEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A +AV +LNGK+ + K +VG+AQKK+ER+ ELK +FEQ E ++QG N
Sbjct: 238 AFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KN+DD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS+ EEA++A+ EMN
Sbjct: 298 LYVKNIDDNIDDERLRKEFTPFGTITSAKVMLE-DGRSKGFGFVCFSSAEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQM----------RPVAMAST---VAPRMPMY 414
G++V SKPLYVALAQRKEDR+A L +Q+ Q +PV S+ P +P
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLASQYMQKMANIRMQQIGQPVFQPSSGGYFVPTIPQP 416
Query: 415 P-----PGAWIWLSAAACSW 429
P P + A W
Sbjct: 417 PQRFFGPAQMAQIRTATTRW 436
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/382 (59%), Positives = 295/382 (77%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DDE+LK+LFS +G S KVM D SG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/384 (59%), Positives = 294/384 (76%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAGSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+LK+LFS +G S KVM DP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLK 284
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 275 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MDAAGSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 307/424 (72%), Gaps = 10/424 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPG---AWIWLSAAACS 428
PLYVALAQRKE+R+A L Q+ Q A + P P P G A I + +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRAA 421
Query: 429 WYEA 432
+Y A
Sbjct: 422 YYSA 425
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPLRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDEKLK+LFS +G S +VM D
Sbjct: 177 KEREAEL----------GARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G S+G GFV+F E+A +A+ +MNGK + + +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 GGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMK 284
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +PL + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPLRIMWSQRDPSLR 94
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/402 (56%), Positives = 302/402 (75%), Gaps = 8/402 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + +E L++ F +YG S VM D +GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
PLYVALAQRKE+R+A L Q+ Q MAS A P+ P
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRAVPNPVINP 399
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 175/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D +DDEKL++LFS +G+ S +VM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G SRG GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLR 94
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/382 (59%), Positives = 294/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGAITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+LK+LFS +G S KVM DP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 167/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/402 (56%), Positives = 302/402 (75%), Gaps = 8/402 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + +E L++ F +YG S VM D +GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
PLYVALAQRKE+R+A L Q+ Q MAS A P+ P
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRAVPNPVINP 399
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 175/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGQPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D +DDEKL++LFS +G+ S +VM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G SRG GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLR 94
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/388 (55%), Positives = 298/388 (76%), Gaps = 2/388 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
AN + SLYVG+L+ VT+S L+++FN +G V S+RVCRD TRRSLGY YVN+ NA +
Sbjct: 36 ANTATSASLYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAAD 95
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN
Sbjct: 96 GERALEQLNYSSIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGN 155
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
+LSCKVATD +G SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG + ++ER ++I
Sbjct: 156 VLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKI 215
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+ ++ FTN+YVKN+ T+E+ + F +YG + S+++ RD G++ FGFVNFE ++
Sbjct: 216 DEMRAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEE 275
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+AL+ F ++ YV +AQKK+ERE EL+ Q++Q +E +K+QG NLYIKNL+D
Sbjct: 276 AQKAVDALHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVNLYIKNLED 335
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+DDEKL+ F PFG+ITSC+VMRD G S+G GFV +S P+EA++A+ EMN KM+ SKP
Sbjct: 336 DVDDEKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKP 395
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAM 403
LYV+LAQRKE RR +L++Q AQ + + M
Sbjct: 396 LYVSLAQRKEIRRQQLESQIAQRQQLRM 423
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/375 (60%), Positives = 294/375 (78%), Gaps = 4/375 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 123 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +++L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 182 TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 241
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 242 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 301
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 302 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 360
Query: 383 RKEDRRARLQAQFAQ 397
RKE+R+A L Q+ Q
Sbjct: 361 RKEERKAHLTNQYMQ 375
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 63 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 119 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 177
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DD+ LK+LFS FG S KVMRDPSG S+G GFV
Sbjct: 178 --------AKEF--TNVYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 227
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 228 SYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLK 275
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 88 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 145
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 146 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQF 205
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 206 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 265
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 266 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 323
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 324 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 377
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRA 362
A+LY+ +L + + L + FSP G + S +V RD I+R G +V F P +A RA
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVNFQQPADAERA 59
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
L MN ++ KP+ + +QR R
Sbjct: 60 LDTMNFDVIKGKPIRIMWSQRDPSLR 85
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/396 (55%), Positives = 297/396 (75%), Gaps = 6/396 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 43 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 102
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCK
Sbjct: 103 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 162
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL------RKQERDTE 196
VATD +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + R+++ E
Sbjct: 163 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKASSRERQSKLE 222
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
K++FTN+YVKNL T++D K F ++G +TSAV+ D G+S+ FGFVNFE ++A
Sbjct: 223 EMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEA 282
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+AVE L+ ++ ++ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D
Sbjct: 283 QKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDD 342
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
IDDE+L+Q F PFGSITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ SKPL
Sbjct: 343 IDDERLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPL 402
Query: 377 YVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
YV+LAQR+E RR +L++Q AQ + M A +P
Sbjct: 403 YVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGIP 438
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/383 (58%), Positives = 295/383 (77%), Gaps = 4/383 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQ 397
PLYVALAQRKE+R+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQR 383
P +A RAL MN ++ KP+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQR 89
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/440 (54%), Positives = 308/440 (70%), Gaps = 16/440 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL DTFSAFGNILSCKVA
Sbjct: 63 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A K+IEK+NGMLLN K VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN E ++E L+ F +YG ITS VM DG S+ FGFV FE+ D A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG NLY+KNLDD+IDDE+
Sbjct: 243 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 303 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPGAWIWLSAAACSWYE 431
QRKEDR+A L +Q+ Q MR M P +P PP + A
Sbjct: 362 QRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRP 421
Query: 432 A--RWGSHAKFLCADSSARA 449
RW + + +A A
Sbjct: 422 TTPRWNAQPPVRPSTQAASA 441
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 26/206 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC-RDLSTRRSLGYGYVNFSNAQEAARAL 82
T++YV + + +D L D+F + G++ S +V +D R G+G+V F + A RA
Sbjct: 183 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR--GFGFVAFEDPDAAERAC 240
Query: 83 EMLNFTPL-NGKPIRVMYSHRDPS----------------LRKSGAGNIFIKNLDKAIDH 125
LN L GKP+ V + + L + N+++KNLD ID
Sbjct: 241 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 300
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+ L F+ FG I S KV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 301 ERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 359
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLS 211
RK++R K+ T+ Y++ ++
Sbjct: 360 LAQRKEDR-----KAHLTSQYMQRMA 380
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/423 (53%), Positives = 308/423 (72%), Gaps = 11/423 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ + GK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM---PMYPPGAWIWLSAAACSWYE 431
PLYVALAQRKE+R+A L Q+ Q MAS P P PP + +++A +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAAIPPAQNR 417
Query: 432 ARW 434
A +
Sbjct: 418 AAY 420
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 171/297 (57%), Gaps = 16/297 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
+G S+G GFV+F E+A +A+ EM GK + K ++V AQ+K +R+ L+ +F QM
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQM 283
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/376 (56%), Positives = 293/376 (77%), Gaps = 2/376 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L++ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 55 SASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 114
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + + R+M+S RDP+LRK+G GNIFIKNLD+ IDHKALHDTF+AFGN+LSCK
Sbjct: 115 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCK 174
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD NG+S+G+GFV +D E+A AI+ +NGMLLNDK+V+VGH++ K+ER I+ KS
Sbjct: 175 VATDENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKS 234
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKNL T+++ F ++G +TSAVV +D +GKSK FGFVNF++ + A AV
Sbjct: 235 QFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAV 294
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+AL+ + + K+ +V +AQKK+ERE EL+ +EQ E K+QGANLYIKNL+D +DD+
Sbjct: 295 DALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDD 354
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITSCK+MRD G S+G GFV +S+PEEA++A+ EMN KM+ SKPLYV+
Sbjct: 355 KLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSP 414
Query: 381 AQRKEDRRARLQAQFA 396
AQR+E RR +L++Q A
Sbjct: 415 AQRREVRRQQLESQIA 430
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/410 (54%), Positives = 305/410 (74%), Gaps = 5/410 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + T SLYVGDL V+++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RALE +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL DTFSAFG
Sbjct: 64 DAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D +G SKGYGFV F+ ++A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E + L++ FG++G S VM D G SK FGFVNFE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AVE +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G ++G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRNKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSA 424
PLY+ALAQRKE+R+A L Q+ Q R ++ + P + Y P + +++A
Sbjct: 362 PLYIALAQRKEERQAHLTNQYMQ-RMASIRAVPNPVLNPYQPPSGYFMTA 410
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MHPSAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALETMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/379 (59%), Positives = 291/379 (76%), Gaps = 4/379 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAK 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KN E +E L+++F +YG S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+ID
Sbjct: 247 AVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYV
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQ 397
ALAQRKE+R+A L Q+ Q
Sbjct: 366 ALAQRKEERKAHLTNQYMQ 384
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 169/288 (58%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN + +DDE+LK+ FS +G S KVM DPSG S+G GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F E+A++A+ +MNGK V K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLK 284
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 170/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L +TFS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA++ +NG +N K ++VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQA 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+SK
Sbjct: 275 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MHTATSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/384 (59%), Positives = 295/384 (76%), Gaps = 7/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F + S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSK---TLSVKVMRDPSGKSKGFGFVSYEKH 238
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 239 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 298
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 299 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 357
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 358 KPLYVALAQRKEERKAHLTNQYMQ 381
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 170/288 (59%), Gaps = 19/288 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS S KVMRDPSG S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFS---KTLSVKVMRDPSGKSKGFGFV 233
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 234 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 281
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 169/294 (57%), Gaps = 26/294 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-- 212
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 213 -KTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 271
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 272 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 329
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 383
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/413 (54%), Positives = 302/413 (73%), Gaps = 11/413 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPV 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDTF 132
+A RALE LNF + G+P+R+M+S RDPSLRKSG G NIFIKNLDK+ID+KAL+DTF
Sbjct: 64 DAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTF 123
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
SAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++E
Sbjct: 124 SAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 182
Query: 193 RDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
R+ E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+F
Sbjct: 183 REAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 242
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
E +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+
Sbjct: 243 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYV 302
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++
Sbjct: 303 KNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRI 361
Query: 371 VVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
V +KPLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 VATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 414
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 171/302 (56%), Gaps = 20/302 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ D + +S GY +V +
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS----KFTNVYVKNLSESTTEE 217
A++A+E LN ++ + V + +RD + KS N+++KNL +S +
Sbjct: 62 PVDAKRALETLNFDVIKGRPVRIMW----SQRDPSLRKSGVGGGVGNIFIKNLDKSIDNK 117
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+
Sbjct: 118 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 176
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+ + ERE EL + A +F N+YIKN + +DDE+LK LF FG S KV
Sbjct: 177 FKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 226
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F Q
Sbjct: 227 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 286
Query: 398 MR 399
M+
Sbjct: 287 MK 288
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S ++ RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ P +A RAL +N ++ +P+ + +QR R
Sbjct: 59 YQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 94
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/382 (57%), Positives = 293/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL +VT++ LY+ F+ G +VS+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 APSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG S+GYGFV F+ ++A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L++ F ++G TS VM D G + FGFV+FEN +D
Sbjct: 184 GARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + + +VG+AQKK ER++ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERQAHLITQYMQ 384
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPGAPSYPIASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGQPVRIMWSQRDPSLR 94
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/441 (52%), Positives = 312/441 (70%), Gaps = 19/441 (4%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG + SLYVGDL A+VT++ LY F+ GQ++S+RVCRD+ TRRSLGY Y+
Sbjct: 1 MNSGGP---AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYI 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+D
Sbjct: 58 NFQQPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKV D NG SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ +FTNVY+KN E E L+ F E+G S VM D G+S+ FGFV
Sbjct: 177 KEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF N DA RAV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG NL
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNL 296
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDDSIDDEKL++ F+P+G+ITS KVM D G SRG GFV FS+PEEA++A+ EMNG
Sbjct: 297 YVKNLDDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP-MYPPGAWIWLSAA-- 425
++V +KPLYVALAQRKE+R+A L Q+ Q R ++ + P +P Y G+ ++++
Sbjct: 356 RIVSTKPLYVALAQRKEERKAILTNQYIQ-RLASIRAIPGPAIPTTYQQGSGYYMTSVPQ 414
Query: 426 ACSWYEA--------RWGSHA 438
S+Y A RW A
Sbjct: 415 VRSFYNAVPNLRPAPRWAFQA 435
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 292/383 (76%), Gaps = 7/383 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHE 239
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 240 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 299
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 300 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 358
Query: 375 PLYVALAQRKEDRRARLQAQFAQ 397
PLYVALAQRKE+R+A L Q+ Q
Sbjct: 359 PLYVALAQRKEERQAHLTNQYMQ 381
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 170/298 (57%), Gaps = 19/298 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 300/409 (73%), Gaps = 10/409 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHE 239
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 240 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 299
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 300 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 358
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 359 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 407
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 170/298 (57%), Gaps = 19/298 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 300/409 (73%), Gaps = 10/409 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHE 239
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 240 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 299
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 300 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 358
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 359 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 407
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 170/298 (57%), Gaps = 19/298 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/444 (52%), Positives = 323/444 (72%), Gaps = 21/444 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ L++ F+ +G V+S+RVCRD+ TRRSLGY YVNF N +A RAL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L G+P+R+M+S RDPSLRKSG GN+FIKNLD++ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDILKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D GQSKGYGFV F+ E+SA ++IEK+NGMLLN K+V+VG F+ +++R+ E+ K+K +
Sbjct: 123 QDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLY 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN+ E+ +++L + F +YG+ITS VM DG S+ FGFV FE+ ++A +AV
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTE 242
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GK+ + K +YVG+AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE+
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+ITS KVM D G S+G GFV FS+PEEA++A+ +MNG++V +KPLYVALA
Sbjct: 303 LRKEFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA----WIWLSAAACSWY------- 430
QRKEDR+A L +Q+ Q ++ P+Y PGA ++ +Y
Sbjct: 362 QRKEDRKAHLDSQYLQRNTNMRMQSIG---PIYQPGASSGYFVPTIPQPQRFYGPTQMTQ 418
Query: 431 ---EARWGSHAKFLCADSSARAAG 451
+ RW S + A AAG
Sbjct: 419 IRPQPRWASQPQVRAGTPQAAAAG 442
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/379 (59%), Positives = 293/379 (77%), Gaps = 4/379 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +A R
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
CKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+ K
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV++E +DA +
Sbjct: 187 AKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE +NG + + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+ID
Sbjct: 247 AVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYV
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQ 397
ALAQRKE+R+A L Q+ Q
Sbjct: 366 ALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 168/288 (58%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A + N+YIKN D +DDE+LK++F +G S KVM DPSG SRG GFV
Sbjct: 184 -------GAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNG + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLK 284
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+S+G+GFV ++ E A KA+E++NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 234/392 (59%), Positives = 297/392 (75%), Gaps = 9/392 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EESA +IEK+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + +E L++ F +YGTITS VM DGKS+ FGFV FEN + A AV+
Sbjct: 183 TNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIK-DGKSRGFGFVAFENPESAEHAVQE 241
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ + K YVG+AQKK+ER++ELK +FEQ E ++QG NLY+KNLDDSIDDE+
Sbjct: 242 LNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FSPFG+ITS KVM + G S+G GFV FS EEA++A+ EMNG++V SKPLYVALA
Sbjct: 302 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAP 409
QRKEDR+A L +Q+ Q MR M P
Sbjct: 361 QRKEDRKAHLASQYMQRMANMRMQHMGQIFQP 392
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN ++ + L + F +
Sbjct: 147 IEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELNDETLKEMFEKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S +V +G+S+G+GFV F+N ESA+ A+++LNG L + K +YVG +K ER
Sbjct: 207 GTITSHRVMIK-DGKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQ 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL +S +E L+K F +GTITSA VM + +G+
Sbjct: 266 MEL-KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGR 323
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F +++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 324 SKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 378
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/382 (59%), Positives = 294/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + + L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DD +LK+LFS +G S KVM DPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/400 (53%), Positives = 300/400 (75%), Gaps = 6/400 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ ++++FN +G V S+RVCRD TRRSLGY YVN+ N + RAL
Sbjct: 44 SASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADGERAL 103
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF AFGN+LSCK
Sbjct: 104 EQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFVAFGNVLSCK 163
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG + ++ER ++++ K+
Sbjct: 164 VATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKA 223
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+Y+KNL T+E+ ++ F YG++TSA+V D +G+SK FGFVN+E+ ++A AV
Sbjct: 224 QFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAV 283
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ L+ K+ YV +AQKK+ERE EL+ +EQ E K+QG NLY+KNL+D +DD+
Sbjct: 284 DNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDD 343
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITSCKVM D G S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+L
Sbjct: 344 KLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSL 403
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
AQR+E RR +L++Q AQ + M A + PGA++
Sbjct: 404 AQRREVRRQQLESQIAQRNQIRMQQAAAAGI----PGAYL 439
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 20/208 (9%)
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENS 253
T I+ + ++YV L + TE + + F G + S V RD +S + +VN+ N+
Sbjct: 37 TSISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNT 96
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
D RA+E LN + + +Q+ A K N++IKNL
Sbjct: 97 ADGERALEQLNYSLIKGRPCRIMWSQRDP----------------ALRKTGQGNIFIKNL 140
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D+ ID++ L F FG++ SCKV D G S+G GFV + T E A A+ +NG ++
Sbjct: 141 DEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLND 200
Query: 374 KPLYVALAQRKEDRRARL---QAQFAQM 398
K +YV +++R+++L +AQF +
Sbjct: 201 KKVYVGPHIPRKERQSKLDEMKAQFTNL 228
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/408 (56%), Positives = 299/408 (73%), Gaps = 15/408 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +A R
Sbjct: 8 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE +NG + + K +VG+AQKK ER+ ELK +FE +E ++QG NLYIKNLDD+ID
Sbjct: 247 AVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYV
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQ-------MRPVAMASTVAPR----MPMYP 415
ALAQRKE+R+A L Q+ Q M P A+ + P MP P
Sbjct: 366 ALAQRKEERKAHLTNQYMQRIAGMRAMPPNAIINQFQPTSGYFMPAVP 413
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 122/213 (57%), Gaps = 25/213 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + + D QL ++F + G+ +SV+V D S+ +S G+G+V+F
Sbjct: 184 GAKAKEF--TNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEK 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKN 118
++A +A+E +N T LNGK + V + R L++ N++IKN
Sbjct: 241 HEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKN 300
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 301 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER K+ TN Y++ ++
Sbjct: 360 SKPLYVALAQRKEER-----KAHLTNQYMQRIA 387
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/400 (54%), Positives = 300/400 (75%), Gaps = 6/400 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 6 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 65
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCK
Sbjct: 66 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER ++I K+
Sbjct: 126 VATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKN 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKN+ T+E+ + F +G ITSAV+ D +GKS+ FGFVNF+ ++A AV
Sbjct: 186 QFTNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAV 245
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EAL+ ++ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D IDDE
Sbjct: 246 EALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDE 305
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F PFG+ITS KVMRD GIS+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+L
Sbjct: 306 RLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 365
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
AQR+E RR +L++Q AQ + M A + PG +I
Sbjct: 366 AQRREVRRQQLESQIAQRNQIRMQQAAATGI----PGGYI 401
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/411 (54%), Positives = 303/411 (73%), Gaps = 8/411 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+LE NV ++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA+++ RALE
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TP+ G+P R+M+S RDP R++G GNIFIKNLD+AID+KALHDTF+AFG ILSCKV
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKV 199
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
A++ +G S GYGFV +++ ++A+ AI+ +NGMLLNDK+VYVGH + K++R +I +++
Sbjct: 200 ASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAH 258
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+TNVYVKNL + T+E+ +K F +YG ITSA + D +GKS+ FGFVNF + AA+AVE
Sbjct: 259 YTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVE 318
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN +F ++ ++G+AQKKSERE EL+ +E E K+QG NLYIKNL + DDE+
Sbjct: 319 ELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDER 378
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ TS KVMR P+G SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 379 LQEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALA 438
Query: 382 QRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYP--PGAWIWLSAAAC 427
QRK+ R +L AQ Q+R + A MYP PG + AA
Sbjct: 439 QRKDVRHQQLAAQMMQHNQLRLQQQQAAAAAAAQMYPGAPGMYYPQPPAAA 489
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/382 (59%), Positives = 294/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + + L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DD +LK+LFS +G S KVM DPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/391 (58%), Positives = 299/391 (76%), Gaps = 7/391 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG N + SLYVGDL+ +VT+S L++ F Q G V+S+RVCRD+ +RRSLGY YV
Sbjct: 1 MNSGGGN---YTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF PL +P+R+M+S RDPSLRKSG GN+FIKNL K ID+KA+ D
Sbjct: 58 NFHQPGDAERALDTMNFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSC+VATD G S+GYGFV F+ EE+A +AI K+NGMLLN+K+V+VG F+ +
Sbjct: 118 TFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
ER+ + +K++ FTNVYVKN E + L++ F YG ITSA VM D GKS+ FGFV
Sbjct: 178 SERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
+FEN D+A +AV+ LN K+ + K+ YVG+AQKK+ER +LK +FEQ E ++QG N
Sbjct: 238 SFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-SRGSGFVAFSTPEEASRALLEM 366
LY+KNLDD IDDE+L++ F+P+G+ITS KVM D +G S+G GFV FS+PEEA++A+ EM
Sbjct: 298 LYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEM 357
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
NG+++V KPLYVALAQRKEDRRA L +QF Q
Sbjct: 358 NGRIIVQKPLYVALAQRKEDRRAHLSSQFVQ 388
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 167/298 (56%), Gaps = 21/298 (7%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
SG GN +++ +LD + L + F G +LS +V D+ + +S GY +V F
Sbjct: 3 SGGGNYTMASLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N L ++ + + +RD + KS NV++KNL + + + +
Sbjct: 63 GDAERALDTMNFEPLKNRPMRIMW----SQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V D G S+ +GFV+FE + A A+ +NG ++K+ +VGK +S
Sbjct: 119 FSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRS 178
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE + M + A F N+Y+KN + +DD KLK++F +G ITS +VM D +
Sbjct: 179 ERE--------RMMGDKARLF--TNVYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQT 228
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV+F P+ A +A+ E+N K + + K +YV AQ+K +R + L+ +F Q++
Sbjct: 229 GKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLK 286
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/411 (53%), Positives = 301/411 (73%), Gaps = 6/411 (1%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N A+ + SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN
Sbjct: 30 NPPAPQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 89
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ NA + RALE LN++ + + R+M+S RDP+LRK+G GN+FIKNLD+AID+KALHDT
Sbjct: 90 YLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDT 149
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F AFGN+LSCKVATD +G+SKGYGFV ++ E+A AI+ +NGMLLNDK+VYVGH + ++
Sbjct: 150 FVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRK 209
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
ER ++++ K++FTN+Y+KNL T+E+ + F YG +TS++V D +GKSK FGFVN
Sbjct: 210 ERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVN 269
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E ++A RAV+ L+ K+ +V +AQKK+ERE EL+ +EQ E K+QG NLY
Sbjct: 270 YERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLY 329
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNL+D DD+KL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN K
Sbjct: 330 IKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 389
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
M+ +KPLYV+LAQR+E RR +L++Q AQ + M A + PG +I
Sbjct: 390 MIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGV----PGGYI 436
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/394 (54%), Positives = 298/394 (75%), Gaps = 2/394 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ V+++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 48 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 107
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+AID+KALHDTF+AFGN+LSCK
Sbjct: 108 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 167
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + K+ER ++++ ++
Sbjct: 168 VATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRA 227
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTN+YVKNL + E+ + F ++G +TSAV+ D +G SK FGFVNFE ++A AV
Sbjct: 228 QFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAV 287
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ L+ +++ ++ +V +AQKK+ERE EL+ +E E K+QG NLYIKNLDD IDDE
Sbjct: 288 DGLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDE 347
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F PFG+ITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+L
Sbjct: 348 RLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSL 407
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
AQR+E RR +L++Q AQ + M A MP Y
Sbjct: 408 AQRREVRRQQLESQIAQRNQIRMQQAAAAGMPGY 441
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 20/203 (9%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
S ++YV L + +E L + F G + S V RD +S + +VN+ N+ D R
Sbjct: 46 SPSASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGER 105
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E LN + + +Q+ A K N++IKNLD++ID
Sbjct: 106 ALEQLNYSLIKGRACRIMWSQRDP----------------ALRKTGQGNIFIKNLDEAID 149
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ L F+ FG++ SCKV D G S+G GFV + T E A A+ +NG ++ K +YV
Sbjct: 150 NKALHDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV 209
Query: 379 ALAQRKEDRRARL---QAQFAQM 398
K++R+++L +AQF +
Sbjct: 210 GHHISKKERQSKLDEIRAQFTNI 232
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/382 (58%), Positives = 292/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN + + L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+P+EA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + D+A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
A + N+YIKN D +DD +LK+LFS +G S KVM DPSG S+G GF
Sbjct: 184 --------GAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGF 235
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLK 284
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/411 (53%), Positives = 301/411 (73%), Gaps = 6/411 (1%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N A+ + SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN
Sbjct: 30 NPPAPQASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 89
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ NA + RALE LN++ + + R+M+S RDP+LRK+G GN+FIKNLD+AID+KALHDT
Sbjct: 90 YLNAADGERALEQLNYSLIKNRACRIMWSQRDPALRKTGQGNVFIKNLDEAIDNKALHDT 149
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F AFGN+LSCKVATD +G+SKGYGFV ++ E+A AI+ +NGMLLNDK+VYVGH + ++
Sbjct: 150 FVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRK 209
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
ER ++++ K++FTN+Y+KNL T+E+ + F YG +TS++V D +GKSK FGFVN
Sbjct: 210 ERQSKLDEMKAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVN 269
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E ++A RAV+ L+ K+ +V +AQKK+ERE EL+ +EQ E K+QG NLY
Sbjct: 270 YERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKLEKLSKYQGINLY 329
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNL+D DD+KL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN K
Sbjct: 330 IKNLEDDFDDDKLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNK 389
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
M+ +KPLYV+LAQR+E RR +L++Q AQ + M A + PG +I
Sbjct: 390 MIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGV----PGGYI 436
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/384 (58%), Positives = 294/384 (76%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 ATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 63
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 64 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 123
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 124 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN + ++ L++ F +YG S VM D GKS+ FGFV++E
Sbjct: 183 EMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKH 242
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NG + + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 243 EDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNL 302
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 303 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 361
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 362 KPLYVALAQRKEERKAHLTNQYMQ 385
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 169/288 (58%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 73 MNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE E
Sbjct: 129 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE---- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
M A +F N+YIKN D +DD++LK+LF +G S KVM DP+G SRG GFV
Sbjct: 184 ----MGAKAKEF--TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNG + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 238 SYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLK 285
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 167/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 98 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 156 IEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+S+G+GFV ++ E A KA+E++NG LN K V+VG +K ER
Sbjct: 216 GKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 276 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 387
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/382 (58%), Positives = 292/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV++E +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG + + K +VG+AQKK+ER+ ELK +FE +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 170/297 (57%), Gaps = 21/297 (7%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+ AGN +++ +L I L++ FS G +LS +V D+ +S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL A + N+YIKN D +DDE+LK+LF +G S KVM DP+
Sbjct: 178 EREAEL----------GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT 227
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV++ E+A++A+ +MNG + K ++V AQ+K +R+A L+ +F ++
Sbjct: 228 GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLK 284
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+S+G+GFV ++ E A KA+E +NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/403 (56%), Positives = 295/403 (73%), Gaps = 8/403 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+ A SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 308 SGATAIPMASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQL 367
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A R LE +N + GKP+R+M+S RDPSLRKSG GNIFIKNL+K+ID+KAL+ TFSAF
Sbjct: 368 ADAERVLETMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAF 427
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV +D NG SKGYGFV F+N+++A KAIEK+NG+ LN+ +VYVG F ++ER+
Sbjct: 428 GNILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKEREL 486
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E + L + FG++G S VM D GKSK FGFV++E
Sbjct: 487 ELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKH 546
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA RAV+ +NGK+F+ K YVG+AQKK ER+ ELK FEQ +E + ++QG NLY+KNL
Sbjct: 547 EDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNL 606
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDE+L++ FSPFG+ITS KVM + G SRG GFV FS PEEA++A+ EMNGK+V +
Sbjct: 607 DDSIDDERLRKAFSPFGTITSAKVMME-GGHSRGFGFVCFSAPEEAAKAVSEMNGKLVAT 665
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
KPLYVALAQRK DR+ L Q+ Q MAS A P++ P
Sbjct: 666 KPLYVALAQRKRDRQVHLTNQYMQ----RMASFQAMSNPVFSP 704
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/399 (54%), Positives = 298/399 (74%), Gaps = 5/399 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ V+++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 51 SASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERAL 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AFGN+LSCK
Sbjct: 111 EQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + K++R +++ K
Sbjct: 171 VATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKK 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVYVKN+ +++ ++ F +G +TSAV+ RD +G+S+ FGFVNFE ++A +AV
Sbjct: 231 QFTNVYVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ L+ F ++ +V +AQKKSERE EL+ +EQ E K+QG NLYIKNL+D +DDE
Sbjct: 291 DTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITS KVMR G S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+L
Sbjct: 351 KLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSL 410
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP---MYPP 416
AQR+E RR +L++Q AQ + M A MP M PP
Sbjct: 411 AQRREVRRQQLESQIAQRNQIRMQQAAAAGMPAGYMNPP 449
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +LE +V D +L D F G + S +V R S G+G+V FS+ EA
Sbjct: 331 SKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVMR-TEGGTSKGFGFVCFSSPDEA 389
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 390 TKAVAEMNNKMMGSKPLYVSLAQR 413
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/411 (54%), Positives = 301/411 (73%), Gaps = 14/411 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N Q+ RAL
Sbjct: 37 SASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERAL 96
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + + R+M+S RDP+LRK+G GNIFIKNLD+AID+KALHDTF+AFGN+LSCK
Sbjct: 97 EQLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCK 156
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD NG S+GYGFV ++N ESA AI+ +NGMLLNDK+VYVGH + K+ER +I+ KS
Sbjct: 157 VATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKS 216
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNV++KNL S +E ++ YG I SAVV +D G S+ FGFVN++N ++AA+AV
Sbjct: 217 QFTNVFIKNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAV 276
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E+LN + D K+ + +AQKK+ERE EL+ +EQ E K+ G NLY+KNLDD DDE
Sbjct: 277 ESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAKLEKLAKYAGVNLYVKNLDDDFDDE 336
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L F PFG+ITS K+MRD G S+G GFV FS+P+EA++A+ E++GKM+ SKPLYV+L
Sbjct: 337 RLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSL 396
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVA---------PRMPMY---PPGAW 419
AQR++ RR +L++Q AQ + + A P PMY PPGA+
Sbjct: 397 AQRRDVRRQQLESQIAQRNQLRLQHQAAAGVPISGFMPGAPMYYQPPPGAY 447
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/390 (58%), Positives = 300/390 (76%), Gaps = 7/390 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDIIKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSC+VA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISR 177
Query: 191 QERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E+ K+K FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 249 NFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
FE+ + A RAV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG N
Sbjct: 238 AFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN 297
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S+G GFV FS EEA++A+ EMN
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSVKVMME-DGRSKGFGFVCFSLAEEATKAVTEMN 356
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G++V SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 GRIVGSKPLYVALAQRKEDRKAHLASQYLQ 386
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 164/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + +S NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDIIKGRPIRIMW----SQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE EL
Sbjct: 128 CRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELG-- 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + + D+KLK++F +G+ITS KVM G SRG GFV
Sbjct: 186 ------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P A RA+ ++NGK + K +YV AQ+K +R+ L+ +F Q++
Sbjct: 238 AFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQLK 286
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 167/294 (56%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S RV +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGS-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 156 IDRVNGMLLNGKKVYVGKFISRKEREKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+S+G+GFV F++ +A +A+ LNG + + K +YVG +K ER
Sbjct: 216 GTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQ 275
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITS VM + DG+S
Sbjct: 276 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSVKVMME-DGRS 334
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F +++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 335 KGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYLQRV 388
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/382 (58%), Positives = 294/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKS+ FGFV++E +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG + + K +VG+AQKK+ER+ ELK +FE +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 170/297 (57%), Gaps = 21/297 (7%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+ AGN +++ +L I L++ FS G +LS +V D+ +S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL A + N+YIKN D +DDE+LK+LF +G S KVM DP+
Sbjct: 178 EREAEL----------GAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPT 227
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV++ E+A++A+ +MNG + K ++V AQ+K +R+A L+ +F ++
Sbjct: 228 GKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLK 284
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+S+G+GFV ++ E A KA+E +NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/382 (57%), Positives = 291/382 (76%), Gaps = 4/382 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNFS +
Sbjct: 5 AGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN + +E L++ F +YG S VM D GKS+ FGF+++E +D
Sbjct: 184 GAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG + + K +VG+AQKK ER+ ELK +FE +E ++QG NLYIKNLDD
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQ 384
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN ++ + L + F +
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKY 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+S+G+GF+ ++ E A KA+E +NG LN K V+VG +K ER
Sbjct: 215 GKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+S
Sbjct: 275 EL-KRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 386
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 170/297 (57%), Gaps = 21/297 (7%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+ AGN +++ +L I L++ FS G +LS +V D+ +S GY +V F
Sbjct: 3 TAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQP 62
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +
Sbjct: 63 ADAERALDTMNFDVVKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 118
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ERE EL A + N+YIKN D ++DE+LK+LF +G S KVM DP+
Sbjct: 178 EREAEL----------GAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPT 227
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GF+++ E+A++A+ +MNG + K ++V AQ+K +R+A L+ +F ++
Sbjct: 228 GKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLK 284
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L I + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FS P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/399 (56%), Positives = 298/399 (74%), Gaps = 4/399 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA + RA+E
Sbjct: 46 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 105
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFGNILSCKV
Sbjct: 106 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 165
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
AT +G S GYGFV ++ E+A AI+ +NGMLLNDK+VYVGH + ++ER +I +S+
Sbjct: 166 ATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAR 224
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY KN+ T+E+ +K F +YG ITS V+ RD DGKSK FGFVNFEN D+A AV+
Sbjct: 225 FTNVYCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVD 284
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+ +S DDE+
Sbjct: 285 ELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 344
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 345 LRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALA 404
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP-PGAW 419
QRK+ RR +L+AQ Q + + A + YP PG +
Sbjct: 405 QRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMY 443
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/392 (59%), Positives = 297/392 (75%), Gaps = 9/392 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EESA +IEK+NGMLLN K+V+VG F+ ++ER+ E+ K+K F
Sbjct: 123 QDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + T+E L++ F +YGTITS VM + KS+ FGFV FEN + A AV+
Sbjct: 183 TNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIK-ENKSRGFGFVAFENPESAEVAVQE 241
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK+ D K YVG+AQKK+ER++ELK +FEQ E ++QG NLY+KNLDDSIDDE+
Sbjct: 242 LNGKELGDGKVLYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FSPFG+ITS KVM + G S+G GFV FS EEA++A+ EMNG++V SKPLYVALA
Sbjct: 302 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALA 360
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAP 409
QRKEDR+A L +Q+ Q MR M P
Sbjct: 361 QRKEDRKAHLASQYMQRMANMRMQHMGQIFQP 392
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 167/295 (56%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-EKGNSKGYGFVHFETEESANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN K + V + R ++ G N+++KN + ++L + F +
Sbjct: 147 IEKVNGMLLNAKKVFVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELTDESLKEMFEKY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S +V N +S+G+GFV F+N ESA+ A+++LNG L D K +YVG +K ER
Sbjct: 207 GTITSHRVMIKEN-KSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQ 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K +F N+YVKNL +S +E L+K F +GTITSA VM + +G+
Sbjct: 266 MEL-KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDERLRKEFSPFGTITSAKVMLE-EGR 323
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F +++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 324 SKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 378
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/380 (56%), Positives = 295/380 (77%), Gaps = 2/380 (0%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RALE L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKVAT
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVAT 169
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D +G+SKGYGFV ++ E+A AI+ +NGMLLNDK+VYVG + ++ER ++I K++FT
Sbjct: 170 DEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFT 229
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKN+ T+E+ ++ F ++G +TSAV+ RD +G+SK FGFVNFE ++A + VE+L
Sbjct: 230 NVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESL 289
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ + + K+ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D +DDE+L+
Sbjct: 290 HDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDERLR 349
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q F PFG+ITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+LAQR
Sbjct: 350 QEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQR 409
Query: 384 KEDRRARLQAQFAQMRPVAM 403
+E RR +L++Q AQ + M
Sbjct: 410 REVRRQQLESQIAQRNQIRM 429
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/402 (53%), Positives = 300/402 (74%), Gaps = 10/402 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N + RALE L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ + + R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKVAT
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT 165
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG+ + ++ER ++++ K++FT
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQFT 225
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KNL S T+++ ++ F +YG +TSA+V D +G SK FGFVN+E+ ++A AV+AL
Sbjct: 226 NLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDAL 285
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ K+ +V +AQKK+ERE EL+ +EQ E K+QG NLYIKNL+D +DDEKL+
Sbjct: 286 HDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLR 345
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F PFG+ITSCKVMRD S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+LAQR
Sbjct: 346 AEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQR 405
Query: 384 KEDRRARLQAQFAQMRPVAMASTVAPRMP--------MYPPG 417
+E RR +L++Q AQ + M A +P YPPG
Sbjct: 406 REVRRQQLESQIAQRNQIRMQQAAAAGIPGGYINGPMYYPPG 447
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 300/409 (73%), Gaps = 10/409 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ F G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHE 239
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 240 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 299
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 300 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 358
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 359 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 407
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 170/298 (57%), Gaps = 19/298 (6%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF P S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDE 223
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 224 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 281
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/397 (57%), Positives = 295/397 (74%), Gaps = 17/397 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+ VCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAA-------------RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
+ RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+
Sbjct: 63 ADVMPTSTSSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKS 122
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V
Sbjct: 123 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 181
Query: 183 YVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F ++ER+ E+ K+K FTNVY+KN E +E L++ F ++G S VMRD G
Sbjct: 182 FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG 241
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV++E +DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E
Sbjct: 242 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERI 301
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA+
Sbjct: 302 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEAT 360
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+A+ EMNG++V SKPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 397
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 110 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 167
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 168 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 227
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 228 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 287
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 288 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 345
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 346 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 399
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 29/301 (9%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESA------ 165
++++ +L + L++ FS G +LS V D+ +S GY +V F
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTS 71
Query: 166 -------QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
++A++ +N ++ K + + +RD + KS NV++KNL +S +
Sbjct: 72 SSPLTVTERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 127
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L +F +G I S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+
Sbjct: 128 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 186
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
+ + ERE EL + A +F N+YIKN + +DDE LK+LFS FG S KVM
Sbjct: 187 KSRKEREAELGAK--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 236
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
RDPSG S+G GFV++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q+
Sbjct: 237 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 296
Query: 399 R 399
+
Sbjct: 297 K 297
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEA-------------SRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P + RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADVMPTSTSSSPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLR 107
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/381 (56%), Positives = 294/381 (77%), Gaps = 2/381 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL+
Sbjct: 48 SLYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ + + R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKVA
Sbjct: 108 LNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVA 167
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD +G SKGYGFV ++ E+A+ AI+ +NGMLLNDK+V+VGH + ++ER ++I+ K+++
Sbjct: 168 TDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKIDEMKAQY 227
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL +E ++ FG++G ITSA + +D +GKS+ FGFVNFE+ + AA AVE
Sbjct: 228 TNIYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVET 287
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
L+ + + ++ YV +AQKKSERE EL+ +E +E K+QG NLYIKNL+D IDDEKL
Sbjct: 288 LHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEKL 347
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ F PFG+ITSCKVMRD S+G GFV FS+P+EA++A+ EMN KM+ SKPLYV+LAQ
Sbjct: 348 RAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQ 407
Query: 383 RKEDRRARLQAQFAQMRPVAM 403
R+E RR +L+ Q AQ + M
Sbjct: 408 RREVRRQQLETQIAQRNQIRM 428
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/389 (57%), Positives = 296/389 (76%), Gaps = 2/389 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALE 83
SLYVGDLEA+V + QL LF+Q+ V S VCRD++ R+SLGYGYVNF + ++A RA+E
Sbjct: 85 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 144
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFT +NGKPIRVM+S+RDP+LRKSG N+FIKNL+ ID+K+L++ FS+FG ILS KV
Sbjct: 145 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 204
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD NG+SKGYGF+QF++E SA+ AI LNGML N ++++VG F+R+QER+ + + FT
Sbjct: 205 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 264
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL + ++ DL F +G ITSA+VMRD +G S+CFGFVNFE S+ A AV+ L
Sbjct: 265 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 324
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK D YV +AQKKSER+ ELK +FE + + +K Q NLY+KNLDD I+DE L+
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+G GFV+F+T E+A+ A+L+MNGKMV KPLYVA+AQR
Sbjct: 385 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 444
Query: 384 KEDRRARLQAQFAQMRPVA-MASTVAPRM 411
KE+R+A L A FA++R +A MA T+ P +
Sbjct: 445 KEERKAFLAAHFARVRALATMAPTLGPNI 473
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +LY+ +L+ ++ D L LF G+V S +V D S RS G G+V+F+ ++A A+
Sbjct: 366 TVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVEDANNAI 424
Query: 83 EMLNFTPLNGKPIRVMYSHR 102
+N + KP+ V + R
Sbjct: 425 LKMNGKMVGKKPLYVAVAQR 444
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/389 (57%), Positives = 296/389 (76%), Gaps = 2/389 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALE 83
SLYVGDLEA+V + QL LF+Q+ V S VCRD++ R+SLGYGYVNF + ++A RA+E
Sbjct: 61 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAME 120
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFT +NGKPIRVM+S+RDP+LRKSG N+FIKNL+ ID+K+L++ FS+FG ILS KV
Sbjct: 121 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 180
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD NG+SKGYGF+QF++E SA+ AI LNGML N ++++VG F+R+QER+ + + FT
Sbjct: 181 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 240
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL + ++ DL F +G ITSA+VMRD +G S+CFGFVNFE S+ A AV+ L
Sbjct: 241 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 300
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK D YV +AQKKSER+ ELK +FE + + +K Q NLY+KNLDD I+DE L+
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+G GFV+F+T E+A+ A+L+MNGKMV KPLYVA+AQR
Sbjct: 361 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 420
Query: 384 KEDRRARLQAQFAQMRPVA-MASTVAPRM 411
KE+R+A L A FA++R +A MA T+ P +
Sbjct: 421 KEERKAFLAAHFARVRALATMAPTLGPNI 449
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +LY+ +L+ ++ D L LF G+V S +V D S RS G G+V+F+ ++A A+
Sbjct: 342 TVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVEDANNAI 400
Query: 83 EMLNFTPLNGKPIRVMYSHR 102
+N + KP+ V + R
Sbjct: 401 LKMNGKMVGKKPLYVAVAQR 420
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/409 (55%), Positives = 294/409 (71%), Gaps = 5/409 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ VT++ LY++F+ +G V S+RVCRD TRRSLGY YVN+ NA +A RALE
Sbjct: 57 TSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALE 116
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + K R+M+S RDPSLRK+G GNIFIKNLD+ ID+KALHDTF+AFG+ILSCKV
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 176
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
A D G SKGYGFV + ESA+ AI+ +NGM LNDK V+VG + ++ER +I+ ++
Sbjct: 177 AMDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAH 236
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KNL T E+L + F +YG +TSA V D GK + FGFVN+EN + A++AVE
Sbjct: 237 FTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVE 296
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K + YV +AQK+ ER+ EL+ EQ E K+QG NLYIKNLDD DDEK
Sbjct: 297 ALHDKDYKGNILYVARAQKRVERDAELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEK 356
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F PFG+ITSCKVM+D G+SRG GFV FS P+EA++A+ EMNGKM+ SKPLYV+LA
Sbjct: 357 LQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLA 416
Query: 382 QRKEDRRARLQAQF---AQMRPVAMASTVAPRMPMYPPGAWIWLSAAAC 427
QRK+ R+ +L+AQ AQMR +A+ P P P ++ AA
Sbjct: 417 QRKDVRKQQLEAQMSQRAQMRSQQIAAAGIPGAPYGAPPNQMYYGGAAA 465
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/453 (50%), Positives = 314/453 (69%), Gaps = 20/453 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+++ + SLYVGDL A+VT++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASSSGYPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ AI +NGMLLND +V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ+ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRMNRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPPG--A 418
KPLYVALAQRKE+R+A L Q+ Q MR + S P +P PPG A
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRALGSPFLGSFQQPTSYFLPAVPQ-PPGQAA 419
Query: 419 WIWLSAAACSWYEARWGSHAKFLCADSSARAAG 451
+ S+ RW S + S R G
Sbjct: 420 YYGSSSMPPPQPAPRWTSQPPRSSSASMVRPPG 452
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M ++ + A+LY+ +L + + L + FSP G I S +V RD + S G ++ F
Sbjct: 1 MNASSSGYPLASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN +M+ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFEMIKGQPIRIMWSQRDPGLR 94
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 290/374 (77%), Gaps = 3/374 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA + RA+E
Sbjct: 47 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 106
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFGNILSCKV
Sbjct: 107 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 166
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
AT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +I +S+
Sbjct: 167 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAN 225
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY KN+ T+E+ +K F YG ITS V+ RD DGKSK FGFVNFE+ ++A AV+
Sbjct: 226 FTNVYAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVD 285
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+ +S DDE+
Sbjct: 286 ELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 345
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 346 LREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 405
Query: 382 QRKEDRRARLQAQF 395
QRK+DRR +L+AQ
Sbjct: 406 QRKDDRRQQLEAQI 419
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/373 (59%), Positives = 283/373 (75%), Gaps = 6/373 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ + SLYVGDL VT++ L+++F +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 7 YQSASLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAER 66
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPS+RKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 67 ALDTLNYTLIKGRPCRIMWSHRDPSIRKSGQGNIFIKNLDKSIDNKALYDTFSAFGNILS 126
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV TD G SKGYGFV ++ E+A AI K+NG +LN K VYVG F+ ++ER +
Sbjct: 127 CKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGRFIARKERTPGSDPE 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+Y+KNL E+ TEEDL++ FG +GT+ SAV+M+D + F FVNFE+ + A RA
Sbjct: 187 KFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRAT 246
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNG+K DKE YVG+AQKKSERE L+ E E A K+QG NLYIKNLDD+++DE
Sbjct: 247 EELNGRKLGDKEVYVGRAQKKSERESFLRKLRE----ERAQKYQGINLYIKNLDDTVNDE 302
Query: 321 KLKQLFS--PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+L +LFS PFG ITSCKVM D G SRG GFV ++ PE+AS+A+ EMNGKMV +KP+YV
Sbjct: 303 ELHKLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYV 362
Query: 379 ALAQRKEDRRARL 391
ALA+RK+ R A+L
Sbjct: 363 ALAERKDVRSAKL 375
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A ++ +LY+ +L+ V D +L+ LF+ + GQ+ S +V D S G+G+V ++N
Sbjct: 282 AQKYQGINLYIKNLDDTVNDEELHKLFSALPFGQITSCKVMSD-DKGNSRGFGFVCYTNP 340
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHR 102
++A++A+ +N + KPI V + R
Sbjct: 341 EDASKAVSEMNGKMVANKPIYVALAER 367
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/393 (56%), Positives = 296/393 (75%), Gaps = 5/393 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
+D NG SKG+GFV F+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + +E L FG +G I S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K YVG+AQKK +R ELKH+FEQ ++ + ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
RKE+R+A L Q+ Q R ++ S P P P
Sbjct: 370 RKEERQAHLTNQYIQ-RMASVRSGPNPVNPYQP 401
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G +F T++Y+ + + D L LF + GQ++SV+V D +S G+G+V+F
Sbjct: 184 GTGTKEF--TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFER 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D S+R G N+++K
Sbjct: 241 HEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGI-NLYVK 299
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV T+ G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 300 NLDDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIV 358
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 359 ATKPLYVALAQRKEER-----QAHLTNQYIQRMA 387
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 304/416 (73%), Gaps = 6/416 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ VT++ LY++F+ +G V S+RVCRD TRRSLGY YVN+ NA +A RALE
Sbjct: 84 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 143
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + K R+M+S RDPSLRK+G GNIFIKNLD+ ID+KALHDTF+AFG+ILSCKV
Sbjct: 144 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 203
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
ATD +G SKGYGFV + ESA+ AI+ +NGM LNDK V+VG + +++R +I+ +S+
Sbjct: 204 ATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQ 263
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KNL TT E+L + FG++G ITSA V D GK + FGFVN+EN + A++AV+
Sbjct: 264 FTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVD 323
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K + YV +AQK++ER+ ELK EQ E K+QG NLY+KNLDD DDEK
Sbjct: 324 ALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEK 383
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F+PFG+ITSCKVM+D G S+G GFV FS+P+EA++A+ EMNGKM+ SKPLYV+LA
Sbjct: 384 LQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLA 443
Query: 382 QRKEDRRARLQAQF---AQMRPVAMASTVAPRMPM-YPPGAWIWLSAAACSWYEAR 433
QRKE R+ +L+AQ +QMR +A+ P P PP + AAA + R
Sbjct: 444 QRKEVRKQQLEAQMSQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGR 499
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 286/375 (76%), Gaps = 2/375 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N ++ +AL
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCK
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G +KGYGFV FD+ ESA AIE +NGMLLNDK+VYVGH + ++ER +++ K+
Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL TE++ FG++G ITS +++D + K + FGFVN+ N + A +AV
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K++ K+ YVG+AQKK ERE EL+ ++EQ E +K+QG NL+IKNL D +DDE
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+LK FS FG+ITS K+M D G S+G GFV ++TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 381 AQRKEDRRARLQAQF 395
AQRKE RR++L+AQ
Sbjct: 439 AQRKEVRRSQLEAQI 453
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 19/292 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ GT ++++ +L+ + + L+D F+ G+++S +V D + GYG+V+F + + A
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESAN 222
Query: 80 RALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+E +N LN K + V + S R+ + K+ N++IKNLD I + D F
Sbjct: 223 AAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFG 282
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + D N + +G+GFV + N E AQKA+++LN K++YVG +K ER
Sbjct: 283 QFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
Query: 194 DTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E+ NK + N+++KNL + +E L+ F +GTITSA +M D GK
Sbjct: 343 EEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK 402
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
SK FGFV + ++A +AV +N + K YV AQ+K R +L+ Q +
Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQ 454
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 304/416 (73%), Gaps = 6/416 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ VT++ LY++F+ +G V S+RVCRD TRRSLGY YVN+ NA +A RALE
Sbjct: 173 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 232
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + K R+M+S RDPSLRK+G GNIFIKNLD+ ID+KALHDTF+AFG+ILSCKV
Sbjct: 233 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKV 292
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSK 201
ATD +G SKGYGFV + ESA+ AI+ +NGM LNDK V+VG + +++R +I+ +S+
Sbjct: 293 ATDEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQ 352
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KNL TT E+L + FG++G ITSA V D GK + FGFVN+EN + A++AV+
Sbjct: 353 FTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVD 412
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
AL+ K + YV +AQK++ER+ ELK EQ E K+QG NLY+KNLDD DDEK
Sbjct: 413 ALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEK 472
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F+PFG+ITSCKVM+D G S+G GFV FS+P+EA++A+ EMNGKM+ SKPLYV+LA
Sbjct: 473 LQNEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLA 532
Query: 382 QRKEDRRARLQAQF---AQMRPVAMASTVAPRMPM-YPPGAWIWLSAAACSWYEAR 433
QRKE R+ +L+AQ +QMR +A+ P P PP + AAA + R
Sbjct: 533 QRKEVRKQQLEAQMSQRSQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGR 588
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/406 (55%), Positives = 297/406 (73%), Gaps = 14/406 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F ++SLYVGDL +V++S L+++FNQ+G V ++R+CRD +TRRSL Y Y+N+ N+ +A R
Sbjct: 5 FSSSSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAER 64
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN TP+ GK R+M+S RDPSLRKSG GNIFIKNLDK +DHKAL+DTFSAFGNILS
Sbjct: 65 ALDTLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFGNILS 124
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV TD SKG+GFV ++++ESA+KAI K+NGM++N+++V+VG F +ER +
Sbjct: 125 CKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGA-TQEV 183
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
K+TNV++KNLSE +E+ L +G IT+ +M D GKSK FGF NFE++D A AV
Sbjct: 184 KYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAV 243
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E NGK F K YVG+AQKK ERE ELKH+FE K+QG NLYIKNLDDSID +
Sbjct: 244 ENENGKMFSGKVIYVGRAQKKLEREAELKHKFE-------TKYQGVNLYIKNLDDSIDSD 296
Query: 321 KLKQLFSPFGSITSCKVMRDPSG-ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL+ FS +G+ITS KVMRD G S+G GFV +STP+EAS+A+ EM+G+MV SKPLYVA
Sbjct: 297 KLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVA 356
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAA 425
AQRK+ RRA+L+AQ + + S+ P +YPP I+ A
Sbjct: 357 FAQRKDVRRAQLEAQHTKFK-----SSRMPVQSIYPPTGPIFYPPA 397
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/364 (59%), Positives = 279/364 (76%), Gaps = 1/364 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL+ V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVN+S+ +A RA+E
Sbjct: 38 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 97
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TP+NGK IR+M+SHRDPS RKSG GNIFIKNLD++ID+KALHDTF AFG ILSCK+
Sbjct: 98 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 157
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A +G+SKGYGFV F+ +E+A AIEK+NGM L K+V+V F+++ +R ++KFT
Sbjct: 158 AHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 216
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV+VKNL EE++++ F +G IT+ V+M+D + KSK FGFVNF++ + A AVE +
Sbjct: 217 NVFVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 276
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + YVG+AQKK+ERE L+ QFE+ E K+QGANLY+KNLDDSIDDE LK
Sbjct: 277 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 336
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q FS +G+ITS KVMRD GIS+G GFV F++PEEASRA E NG M+ KP+YVA+AQR
Sbjct: 337 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 396
Query: 384 KEDR 387
KE R
Sbjct: 397 KEIR 400
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASR 361
G +LY+ +LD+++ + +L +FS G +TS +V RD ++R G G+V +S+ +A R
Sbjct: 37 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRD--AVTRRSLGYGYVNYSSGADAVR 94
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
A+ +N + K + + + R R
Sbjct: 95 AMEALNYTPINGKTIRIMWSHRDPSTR 121
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/424 (54%), Positives = 305/424 (71%), Gaps = 16/424 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLY+GDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPSLR+SG GNIFIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV D NG SKGYGFV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAK 186
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEY-GTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN + +E L++ F +Y G S VM D GKSK FGFV+FE +DA
Sbjct: 187 AREFTNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQ 246
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +N K+ + + YVG+AQKK+ER+ ELK +FE +E K+QG NLY+KNLDD+I
Sbjct: 247 KAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNI 306
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
+DE+L + FSPFG+ITS KVM + G SRG GFV FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 307 NDERLWKEFSPFGTITSAKVMME-EGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLY 365
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI--WLSAAACSWYEARWG 435
VALAQRKE+R+ L +QF Q R M + PP A I + AAA ++ A
Sbjct: 366 VALAQRKEERKMHLTSQFMQ-RLAGMRAV--------PPSAIIGQYQPAAASGYFMAAMP 416
Query: 436 SHAK 439
A+
Sbjct: 417 QQAQ 420
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M A + A+LYI +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPAGPSYPMASLYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN +V KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLR 94
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/389 (57%), Positives = 295/389 (75%), Gaps = 2/389 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALE 83
SLYVGDLEA+V + QL LF+Q+ V S VCRD++ +SLGYGYVNF + ++A RA+E
Sbjct: 62 SLYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAME 121
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNFT +NGKPIRVM+S+RDP+LRKSG N+FIKNL+ ID+K+L++ FS+FG ILS KV
Sbjct: 122 NLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPNIDNKSLYEMFSSFGTILSSKV 181
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD NG+SKGYGF+QF++E SA+ AI LNGML N ++++VG F+R+QER+ + + FT
Sbjct: 182 ATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQEREHTGDANNFT 241
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL + ++ DL F +G ITSA+VMRD +G S+CFGFVNFE S+ A AV+ L
Sbjct: 242 NVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNL 301
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK D YV +AQKKSER+ ELK +FE + + +K Q NLY+KNLDD I+DE L+
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LF FG + SCKVM D G S+G GFV+F+T E+A+ A+L+MNGKMV KPLYVA+AQR
Sbjct: 362 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 421
Query: 384 KEDRRARLQAQFAQMRPVA-MASTVAPRM 411
KE+R+A L A FA++R +A MA T+ P +
Sbjct: 422 KEERKAFLAAHFARVRALATMAPTLGPNI 450
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +LY+ +L+ ++ D L LF G+V S +V D S RS G G+V+F+ ++A A+
Sbjct: 343 TVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVEDANNAI 401
Query: 83 EMLNFTPLNGKPIRVMYSHR 102
+N + KP+ V + R
Sbjct: 402 LKMNGKMVGKKPLYVAVAQR 421
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/403 (56%), Positives = 294/403 (72%), Gaps = 7/403 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF +A R
Sbjct: 16 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 75
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DTFS FGNILS
Sbjct: 76 ALDTMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILS 135
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R E+ ++
Sbjct: 136 CKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAARMREMGET 195
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNV++KN ++ +E L+K F ++G ITS VM D DGKSK FGFV FEN +DA +
Sbjct: 196 ARRFTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEK 255
Query: 259 AVEALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV ++ + D E YV +AQKK+ER ELK ++EQ E ++QG NLY+KNLDD+
Sbjct: 256 AVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDT 315
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE L+Q F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGKM+ +KPL
Sbjct: 316 VDDEVLRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPL 375
Query: 377 YVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPPG 417
YVALAQRKEDR+A+L +Q+ Q R ++ A MP MY PG
Sbjct: 376 YVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGAMPGTMYTPG 417
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/415 (53%), Positives = 300/415 (72%), Gaps = 12/415 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNLD +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D NG S+GYGFV F+ E+A +AI +NGMLLND++V+VG+F
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E + E LQ++F +G S VM D G+SK FGF
Sbjct: 176 RREREAEYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE DA +AVE +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG N
Sbjct: 236 VNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY--PPGAWI 420
G++V +KPLYVALAQRKE+R+A L Q+ Q R + + P + PPG ++
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATLRTLPGPLFCSFQPPPGYFV 408
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/407 (54%), Positives = 308/407 (75%), Gaps = 7/407 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL A+VT++ L++ F+ G ++S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMNSLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF L G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFG+ILS
Sbjct: 68 ALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV TD NG +KGYGFV F+ +E+A KAIEK+NGMLLN K+VYVG+F+ ++ER ++ +
Sbjct: 128 CKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGDH 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ +FTNV++KNL+E + L + G+YG+I SA +M D D KSK FGF++FE+ + A
Sbjct: 188 QKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFD-DSKSKGFGFISFEDHEAAND 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
V+ +NG + + + Y G+AQKK+ER ELK +FE +E + ++QG NLYIKNLDD ID
Sbjct: 247 FVKTINGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FS +G+ITS KVM D S+G GFV FS+PEEA++A+ EMNG+++V+KPLYV
Sbjct: 307 DERLRKEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYV 366
Query: 379 ALAQRKEDRRARLQAQFAQ-MRP---VAMASTVAPRMPMYPPGAWIW 421
ALAQRK++RRA+L +Q+ Q + P V ++ P P+YP A+ +
Sbjct: 367 ALAQRKDERRAQLASQYMQRVAPQVRVGQQASQQPVNPVYPTMAYHY 413
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/364 (59%), Positives = 278/364 (76%), Gaps = 1/364 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
SLYVGDL+ V ++QL+ +F+QMG V SVRVCRD TRRSLGYGYVN+S+ +A RA+E
Sbjct: 37 VSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSLGYGYVNYSSGADAVRAME 96
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TP+NGK IR+M+SHRDPS RKSG GNIFIKNLD++ID+KALHDTF AFG ILSCK+
Sbjct: 97 ALNYTPINGKTIRIMWSHRDPSTRKSGVGNIFIKNLDESIDNKALHDTFIAFGPILSCKI 156
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A +G+SKGYGFV F+ +E+A AIEK+NGM L K+V+V F+++ +R ++KFT
Sbjct: 157 AHQ-DGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLAATGETKFT 215
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV+VKNL EE++ + F +G IT+ V+M+D + KSK FGFVNF++ + A AVE +
Sbjct: 216 NVFVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETM 275
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + YVG+AQKK+ERE L+ QFE+ E K+QGANLY+KNLDDSIDDE LK
Sbjct: 276 NNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDETLK 335
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
Q FS +G+ITS KVMRD GIS+G GFV F++PEEASRA E NG M+ KP+YVA+AQR
Sbjct: 336 QEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQR 395
Query: 384 KEDR 387
KE R
Sbjct: 396 KEIR 399
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASR 361
G +LY+ +LD+++ + +L +FS G +TS +V RD ++R G G+V +S+ +A R
Sbjct: 36 GVSLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRD--AVTRRSLGYGYVNYSSGADAVR 93
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
A+ +N + K + + + R R
Sbjct: 94 AMEALNYTPINGKTIRIMWSHRDPSTR 120
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 289/374 (77%), Gaps = 3/374 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF NA + RA+E
Sbjct: 45 TSLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAME 104
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFGNILSCKV
Sbjct: 105 QLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKV 164
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
AT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +I +S K
Sbjct: 165 ATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEESRAK 223
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY KN+ T+E +K F YG ITS V+ RD DGKSK FGFVNFE+ ++A +AV+
Sbjct: 224 FTNVYCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVD 283
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+ +S DDE+
Sbjct: 284 ELHDSDFHGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDER 343
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++PLYVALA
Sbjct: 344 LREEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALA 403
Query: 382 QRKEDRRARLQAQF 395
QRK+ RR +L+AQ
Sbjct: 404 QRKDVRRQQLEAQI 417
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/403 (57%), Positives = 293/403 (72%), Gaps = 10/403 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +VT++ LY+ F+ GQ++S+RVCRD T++SLGY YVNFS EA R
Sbjct: 9 FPLTSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAER 68
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
L+ +NF L GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFGNILS
Sbjct: 69 VLDTMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILS 128
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CKVA D +G SKGYGFV F++ E+A KAIEK+NGMLLN K+VYVG F+ + ER+ EI +
Sbjct: 129 CKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEK 188
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
K+TNVYVKN + T+E L F YGTITS VVM + DG SK FGF+ FE + A +
Sbjct: 189 SKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEK 248
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV +N + + YVG+AQKKSER ELK +EQ E ++ QGAN+YIKNLDD+ D
Sbjct: 249 AVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFD 308
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+++L++ FS FG+ITS KVM + G S+G GFV FSTPEEAS+A+ EM+G+M+ SKP+YV
Sbjct: 309 NDRLRKEFSQFGAITSAKVMTE-GGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYV 367
Query: 379 ALAQRKEDRRARLQAQFAQM-------RPVAMASTVAPRMPMY 414
ALAQR EDRRA L AQ Q P+ + P +P +
Sbjct: 368 ALAQRYEDRRAYLSAQCMQRIRHQTMSPPLTTPQFLIPTLPRF 410
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ ++Y+ +L+ + +L F+Q G + S +V + RS G+G+V FS +EA
Sbjct: 291 NRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVMTEGG--RSKGFGFVCFSTPEEA 348
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
++A+ ++ + KPI V + R
Sbjct: 349 SKAITEMDGRMIGSKPIYVALAQR 372
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/379 (57%), Positives = 294/379 (77%), Gaps = 4/379 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRDL TRRSLGY YVNF +A R
Sbjct: 9 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAER 68
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GNIFIKNLDK ID+KAL+DTFSAFGNILS
Sbjct: 69 ALDTMNFDAIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILS 128
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CK+A D NG S GYGFV F+ EE+A+ +IEK+NGMLLN K+V+VG F+ ++ER +
Sbjct: 129 CKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKERLEMLGDK 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KFTNVYVKNL+E+ ++ L++ F +G I SA +M +G+ + FGFV+F++ + AA+
Sbjct: 188 AKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAK 247
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE LN K+ + KE YVG+AQKK+ER+ ELK +FE+ E +++QG NLY+KNLD+ ID
Sbjct: 248 AVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQID 307
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FS FG+ITS +VM + G ++G GFV FS+PEEA++A+ EMNG++VV+KPLYV
Sbjct: 308 DERLRKEFSQFGTITSARVMTE-GGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYV 366
Query: 379 ALAQRKEDRRARLQAQFAQ 397
ALAQRKEDR+A L AQ+ Q
Sbjct: 367 ALAQRKEDRKAHLAAQYMQ 385
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 21/304 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + LYD F+ G ++S ++ D + SLGYG+V+F + A +
Sbjct: 98 GVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG--SLGYGFVHFETEEAARNS 155
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R L G N+++KNL++ +D K L + F F
Sbjct: 156 IEKVNGMLLNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVF 215
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+S K+ GQ +G+GFV FD+ E+A KA+E+LN + K++YVG +K ER
Sbjct: 216 GKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQA 275
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E IN+ + N+YVKNL E +E L+K F ++GTITSA VM +G G++K
Sbjct: 276 ELKEKFERMKMERINRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEG-GRTK 334
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + +
Sbjct: 335 GFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLAAQYMQRIAGMRMQG 394
Query: 304 QGAN 307
QG N
Sbjct: 395 QGVN 398
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L + FS G +LS +V DL +S GY +V F A++A++
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 72
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + + + + +RD + KS N+++KNL ++ + L +F +G I S
Sbjct: 73 MNFDAIKGRPIRIMW----SQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILS 128
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ D +G S +GFV+FE + A ++E +NG + K+ +VG+ + ER LE+
Sbjct: 129 CKIAMDQNG-SLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFVGRFMSRKER-LEM--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ + A KF N+Y+KNL++++DD+KL+++F FG I S K+M G RG GFV
Sbjct: 184 ----LGDKAKKF--TNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F E A++A+ E+N K V K +YV AQ+K +R+A L+ +F +M+
Sbjct: 238 SFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMK 285
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L+ + D +L F+Q G + S RV + R+ G+G+V FS+ +EA
Sbjct: 290 NRYQGVNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGG--RTKGFGFVCFSSPEEA 347
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 348 TKAVTEMNGRIVVAKPLYVALAQR 371
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 285/375 (76%), Gaps = 2/375 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N ++ +AL
Sbjct: 65 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 124
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCK
Sbjct: 125 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 184
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G +KGYGFV FD+ ESA AIE +NGMLLNDK+VYVGH + ++ER +++ K+
Sbjct: 185 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 244
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL TE++ FG++G ITS +++D + K + FGFVN+ N + A +AV
Sbjct: 245 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 304
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K++ K+ YVG+AQKK ERE EL+ +EQ E +K+QG NL+IKNL D +DDE
Sbjct: 305 DELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 364
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+LK FS FG+ITS K+M D G S+G GFV ++TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 365 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 424
Query: 381 AQRKEDRRARLQAQF 395
AQRKE RR++L+AQ
Sbjct: 425 AQRKEVRRSQLEAQI 439
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 19/292 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ GT ++++ +L+ + + L+D F+ G+++S +V D + GYG+V+F + + A
Sbjct: 150 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESAN 208
Query: 80 RALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+E +N LN K + V + S R+ + K+ N++IKNLD I + D F
Sbjct: 209 AAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFG 268
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + D N + +G+GFV + N E AQKA+++LN K++YVG +K ER
Sbjct: 269 QFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 328
Query: 194 DTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E+ NK + N+++KNL + +E L+ F +GTITSA +M D GK
Sbjct: 329 EEELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK 388
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
SK FGFV + ++A +AV +N + K YV AQ+K R +L+ Q +
Sbjct: 389 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQ 440
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/384 (55%), Positives = 291/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG S+GYGFV F+ E+A +AIE +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN + ++ L++ F +G S VM D +G+SK FGFVNFE
Sbjct: 182 EVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + R GYG+V+F + A RA
Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GYGFVHFETHEAATRA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D L + FS F
Sbjct: 155 IETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV F+ E AQKA+ +NG +N + +YVG ++ ER +
Sbjct: 215 GKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQS 274
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E +N+ + N+YVKNL + +E L+K F YGTITSA VM +G G+SK
Sbjct: 275 ELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG-GRSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 170/296 (57%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G S+ +GFV+FE + A RA+E +NG +D++ +VG + + E
Sbjct: 120 SAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE E+ A + N+YIKN D +DD++L+++FS FG S KVM D +G
Sbjct: 179 REAEV----------GARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
S+G GFV F EEA +A+ +MNGK + + LYV AQ++ +R++ L+ +F QM+
Sbjct: 229 RSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQMK 284
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/434 (54%), Positives = 316/434 (72%), Gaps = 17/434 (3%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA A G A A +SLYVGDL+ +VT++QL+++F+Q+G V S+RVCRD
Sbjct: 1 MATTTANGGAAVPEAAAATPVHNSSLYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAV 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEM---LNFTPL--------NGKPIRVMYSHRDPSLRKS 109
TRRSLGY YVN+++A +AA A LN+T + + KP+R+M+SHRDP+ RKS
Sbjct: 61 TRRSLGYAYVNYNSALDAAAAERAIEALNYTSVIPGKEGGEDSKPMRIMWSHRDPAFRKS 120
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G GNIFIKNLDK ID+KALHDTF+AFG ILSCKVATDL G SKGYGFV ++ EE+AQ AI
Sbjct: 121 GVGNIFIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAI 180
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
EK+NGMLL K+V+VG FL++ ER + + +TNV+VKNLSE+ T+E+++K F E+G +
Sbjct: 181 EKVNGMLLEGKKVFVGPFLKRTERPVD-KEQHYTNVFVKNLSENLTDEEVEKMFNEHGMV 239
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TS +M+D GKSK FGF+NFE+++ A AV ALNGK+ D KE Y G+AQKK+ERE ELK
Sbjct: 240 TSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELK 299
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+F++ +E K+QG NLY+KNL D +DD++L+ F+P G+ITS KVM+D +G S+G G
Sbjct: 300 QKFDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFG 359
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAM-----A 404
FV +S+PEEA+RA+ EMNGKM++ KP+YVALAQR+E RR +L+ Q+ Q R M A
Sbjct: 360 FVCYSSPEEATRAVTEMNGKMLLGKPMYVALAQRREVRRQQLEQQYTQQRVAPMSGRPNA 419
Query: 405 STVAPRMPMYPPGA 418
P ++PP A
Sbjct: 420 PGPVPMPGVFPPNA 433
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/405 (53%), Positives = 297/405 (73%), Gaps = 7/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
ALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/437 (51%), Positives = 307/437 (70%), Gaps = 18/437 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ+ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPP-GAW 419
KPLYVALAQRKE+R+A L Q+ Q MR ++ +S P MP P A+
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 420 IWLSAAACSWYEARWGS 436
+ RW S
Sbjct: 421 YGCGPVTPTQPAPRWTS 437
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 167/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L++LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/437 (51%), Positives = 306/437 (70%), Gaps = 18/437 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPP-GAW 419
KPLYVALAQRKE+R+A L Q+ Q MR ++ +S P MP P A+
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 420 IWLSAAACSWYEARWGS 436
+ RW S
Sbjct: 421 YGCGPVTPTQPAPRWTS 437
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 166/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/440 (52%), Positives = 309/440 (70%), Gaps = 15/440 (3%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N GAN + SLYVGDL VT++ L++ F+ G VVS+RVCRD+ TRRSLGY YVN
Sbjct: 3 NTAGAN---YPIASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVN 59
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
F +A RAL+ +NF L G+PIR+M+S RDPSLR+SG GNIFIKNLDK ID+KA++DT
Sbjct: 60 FQQPADAERALDSMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDT 119
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G SKGYGFV F+ EESA AI K+NGMLLN K+V+VG F+ ++
Sbjct: 120 FSAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRK 179
Query: 192 ERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+R+ E+ K+K FTNVY+KN + +E L + F +YG +TS VM DGKS+ FGFV
Sbjct: 180 DRERELGEKAKYFTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVC 239
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E+ D A RA + ++ K + K +VG+AQK++ER+ EL+ +FEQ E +++QG NLY
Sbjct: 240 YEDPDAAERACDDMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLY 299
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDD+IDDE+L++ F+P+G+ITS KVM + G GFV FS+PEEA++A+ EMNG+
Sbjct: 300 VKNLDDTIDDERLRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKAVTEMNGR 359
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMY----PPGAWIW 421
++VSKPLYVALAQRKEDR+A+L +Q+ Q MR M P P Y P +
Sbjct: 360 ILVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRMQQMGQMFQPGGPGYFMPAPIQPQRF 419
Query: 422 LSAAACSWYEA--RWGSHAK 439
+ A + + A RW + +
Sbjct: 420 YTPAQMAQFRATPRWSAQPQ 439
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/416 (53%), Positives = 298/416 (71%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S DPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + + D + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQHDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRRSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KP+ + +Q R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLR 94
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/437 (51%), Positives = 306/437 (70%), Gaps = 18/437 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPP-GAW 419
KPLYVALAQRKE+R+A L Q+ Q MR ++ +S P MP P A+
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 420 IWLSAAACSWYEARWGS 436
+ RW S
Sbjct: 421 YGCGPVTPTQPAPRWTS 437
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 166/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/412 (55%), Positives = 299/412 (72%), Gaps = 29/412 (7%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVG+L ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNA----------------------QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
NF Q A RAL+ +NF + G+PIR+M+S RDPSLRK
Sbjct: 58 NFQQPADVVVVGDGGSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMWSQRDPSLRK 117
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKV D +G SKGYGFV F+ EE+A K+
Sbjct: 118 SGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKS 177
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEY 226
IEK+NGMLLN K+VYVG F+ ++ER E+ K+K FTNVYVKN E T++ L++ F +Y
Sbjct: 178 IEKVNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 237
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERE 285
GTITS VM DGKS+ FGFV FE+ + A +AV LNGK+ + K YVG+AQKK+ER+
Sbjct: 238 GTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQ 297
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
ELK +FEQ E +++QG NLY+KNLDD+IDDE+L++ F+PFG+ITS KVM + G S
Sbjct: 298 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 356
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+G GFV FS PEEA++A+ EMNG++V SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 357 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQ 408
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 167/294 (56%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 119 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGA-SKGYGFVHFETEEAANKS 177
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R ++ G N+++KN + + L + F +
Sbjct: 178 IEKVNGMLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKY 237
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV +G+S+G+GFV F++ SA++A+ LNG + + K +YVG +K ER
Sbjct: 238 GTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQ 297
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + +G+S
Sbjct: 298 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 356
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 357 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 410
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 38/311 (12%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE--------- 162
++++ NL I L + FS G +LS +V D+ +S GY +V F
Sbjct: 12 SLYVGNLHTDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADVVVVGDG 71
Query: 163 -------------ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKN 209
+ A++A++ +N ++ + + + +RD + KS NV++KN
Sbjct: 72 GSGGGGCGSGSGSQRAERALDTMNFDIIKGRPIRIMW----SQRDPSLRKSGVGNVFIKN 127
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269
L ++ + + +F +G I S V +D G SK +GFV+FE + A +++E +NG +
Sbjct: 128 LDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNGMLLN 187
Query: 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329
K+ YVGK + ER+ EL E A F N+Y+KN + + D+KLK++F +
Sbjct: 188 GKKVYVGKFIPRKERQKELG--------EKAKLF--TNVYVKNFGEDMTDDKLKEMFEKY 237
Query: 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRR 388
G+ITS KVM G SRG GFVAF P A +A+L++NGK + K +YV AQ+K +R+
Sbjct: 238 GTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQ 297
Query: 389 ARLQAQFAQMR 399
L+ +F Q++
Sbjct: 298 QELKRKFEQLK 308
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 214/384 (55%), Positives = 290/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 164/294 (55%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ ER
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 166/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/459 (49%), Positives = 313/459 (68%), Gaps = 23/459 (5%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL A+VT++ LY+ F G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFS FGNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E+ +FTN+YVKNL E+ LQ F ++G + S VM+D +G S+ FGF
Sbjct: 176 RREREAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE ++A +AV +NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ +++QG N
Sbjct: 236 VNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQDRLNRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAM---------ASTVAPRMPMY 414
G+++ +KPLYVALAQRKE+RRA L Q+ Q MR + + S P MP
Sbjct: 355 GRIIGTKPLYVALAQRKEERRAILSNQYMQRLSTMRALGVPLLGSSQQPTSYFLPAMPQP 414
Query: 415 PPGAWIWLSAAACSWYEA-RWGSHAKFLCADSSARAAGS 452
P A + S + + A RW + S R +
Sbjct: 415 PARAAYYGSGSVATIQPAPRWAAQPPRPSCASMVRPPAT 453
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/405 (54%), Positives = 295/405 (72%), Gaps = 7/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S DPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
ALAQRKE+R+A L ++ Q A + P P P G ++
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + + D + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQHDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRRSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KP+ + +Q R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLR 94
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/381 (57%), Positives = 282/381 (74%), Gaps = 2/381 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N N + SLY+G+L+ VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N +
Sbjct: 62 NGNTSTSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNME 121
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ +AL+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG
Sbjct: 122 DGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFG 181
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT- 195
ILSCKVA D G SKGYGFV FD+ +SA AIE +NGMLLNDK+VYVGH + +++R +
Sbjct: 182 KILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSK 241
Query: 196 -EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
E K+ FTNVYVKNL TTEE+ K F +YG ITS + +D GK + F FVNF D
Sbjct: 242 FEALKANFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHD 301
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A +AV+ LN ++ K+ YVG+AQKK ER+ EL+ Q+EQ E +K+QG NL++KNL
Sbjct: 302 SAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQ 361
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+LK FS FG+ITS KVM D + S+G GFV +S PEEA++A+ EMN +M+ K
Sbjct: 362 DEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGK 421
Query: 375 PLYVALAQRKEDRRARLQAQF 395
PLYVALAQRKE RR++L+AQ
Sbjct: 422 PLYVALAQRKEVRRSQLEAQI 442
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/384 (58%), Positives = 291/384 (75%), Gaps = 7/384 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL VT++QL+++FN +G VVS+RVCRD TRRSLGY YVNF A +A R
Sbjct: 42 FPSGSLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN++ + GKP R+M+S RDP++RKSG GN+FIKNLDK ID+KAL DTFSAFGNILS
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFGNILS 161
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CKV TD NG SKGYGFV ++ +E+A+ AI K+NGM++N KQV+VG F+ ++ER E+ +
Sbjct: 162 CKVVTDENG-SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKER-VELGEG 219
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+KFTNV+VKNL E TT+ L F ++G ITS V+M+ D KSK FGFV +E +DA
Sbjct: 220 VTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQ 279
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AV ALNG + K +V +AQKK+ERE ELK +++ E +K+QG NLY+KNLDD+I
Sbjct: 280 AAVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAI 339
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKP 375
D++K++ F+PFG+ITS K+MRD G SRG GF+ FS+ EEA++A+ EMNG+ + KP
Sbjct: 340 DEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKP 399
Query: 376 LYVALAQRKEDRRARLQAQFAQMR 399
LYVALAQR EDRRA+L A FAQ R
Sbjct: 400 LYVALAQRAEDRRAQLAAHFAQQR 423
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/437 (51%), Positives = 306/437 (70%), Gaps = 18/437 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPP-GAW 419
KPLYVALAQRKE+R+A L Q+ Q MR ++ +S P MP P A+
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 420 IWLSAAACSWYEARWGS 436
+ RW S
Sbjct: 421 YGCGPVTPTQPAPRWTS 437
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 297/405 (73%), Gaps = 7/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRR Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
ALAQRKE+R+A L ++ Q A + P P P G ++
Sbjct: 366 ALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + + Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/407 (52%), Positives = 297/407 (72%), Gaps = 16/407 (3%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N + RALE L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK----------ALHDTFSAF 135
N++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+K ALHDTF+AF
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAF 165
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+LSCKVATD G+S+GYG+V ++ E+A+ AI+ +NGMLLNDK+VYVG+ + ++ER +
Sbjct: 166 GNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQS 225
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ ++ FTN+YVKNL T++ + F ++G +TSAV+ D +GKSK FGFVNFEN
Sbjct: 226 KLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENH 285
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ AA+AV+ L+ F+ K+ +V +AQKK+ERE EL+ +E E K+QG NLYIKNL
Sbjct: 286 EQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNL 345
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+D +DDEKL+ F PFG+ITSCKVMRD G S+G GFV FS+P+EA++A+ EMN KM+ S
Sbjct: 346 EDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGS 405
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
KPLYV+LAQR+E RR +L++Q AQ + M A + PG +I
Sbjct: 406 KPLYVSLAQRREVRRQQLESQIAQRNQIRMQQAAAAGL----PGGYI 448
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 296/405 (73%), Gaps = 7/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
ALAQRKE+R+A L ++ Q A + P P P G ++
Sbjct: 366 ALAQRKEERQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A++A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAERALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMK 284
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/384 (55%), Positives = 290/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 166/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/410 (55%), Positives = 297/410 (72%), Gaps = 7/410 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G + SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF
Sbjct: 8 GAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQ 67
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+A RAL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DTFS
Sbjct: 68 QPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFS 127
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R
Sbjct: 128 MFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTAR 187
Query: 194 DTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
E+ ++ +FTNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV FE
Sbjct: 188 LREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFE 247
Query: 252 NSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
N +DA +AV ++ + +++ YV +AQKK+ER ELK ++EQ E ++QG NLY
Sbjct: 248 NPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLY 307
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDD+++D+ LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGK
Sbjct: 308 VKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 367
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPPG 417
M+ +KPLYVALAQRKEDR+A+L +Q+ Q R ++ A MP +Y PG
Sbjct: 368 MMCTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGSMPGTVYTPG 416
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/410 (55%), Positives = 297/410 (72%), Gaps = 7/410 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G + SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF
Sbjct: 8 GAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQ 67
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+A RAL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DTFS
Sbjct: 68 QPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFS 127
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R
Sbjct: 128 MFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTAR 187
Query: 194 DTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
E+ ++ +FTNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV FE
Sbjct: 188 LREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFE 247
Query: 252 NSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
N +DA +AV ++ + +++ YV +AQKK+ER ELK ++EQ E ++QG NLY
Sbjct: 248 NPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLY 307
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDD+++D+ LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGK
Sbjct: 308 VKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 367
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPPG 417
M+ +KPLYVALAQRKEDR+A+L +Q+ Q R ++ A MP +Y PG
Sbjct: 368 MMCTKPLYVALAQRKEDRKAQLASQYMQ-RLASIRMHNAGSMPGTVYTPG 416
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/420 (53%), Positives = 301/420 (71%), Gaps = 10/420 (2%)
Query: 7 QGQNVNGGGANANQFGTT--SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
Q Q G A G T SLY+GDLE +VT++ L+++FN +G V S+RVCRD TRRS
Sbjct: 46 QQQTAFTGAAAPIMTGATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRS 105
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGYGY+N+ + +A RAL+ LN+T + G P+R+M+S+RDP+LR++G GNIFIKNL ID
Sbjct: 106 LGYGYINYLDIADAERALDTLNYTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNLHTTID 165
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
HKALHDTFSAFG ILSCK+A D +S G+GFV ++ E A+ AI+ +NGMLLND+QVYV
Sbjct: 166 HKALHDTFSAFGKILSCKIAMD-GERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYV 224
Query: 185 GHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
G + K+ER + I +SKFTN+YVKN+ S ++ ++ F +GT S V+M D +G S
Sbjct: 225 GLHISKKERSSTIEEKRSKFTNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNS 284
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
K FGFVN+EN +DA RAVE ++ K+ K+ YVG+AQKK ERE EL+ Q+E+ +E K
Sbjct: 285 KEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQYEKIREEKLSK 344
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361
+QG NL++KN+D+SIDDEKL+Q FS FG+ITS K+M D +GIS+G GFV FS P+EA++
Sbjct: 345 YQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATK 404
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP----MYPPG 417
A+ EMN +M+ +KP+YVALAQRKE RR +L AQ Q A + P P YPPG
Sbjct: 405 AVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQMQQRAMRAHQQMMPPGYPGASIFYPPG 464
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/405 (53%), Positives = 296/405 (73%), Gaps = 7/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG GNIF+KNLDK+I++K L+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CKV D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 VKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
ALAQRKEDR+A L ++ Q A + P P P G ++
Sbjct: 366 ALAQRKEDRQAHLTNEYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 168/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + +S N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRRSGVGNIFVKNLDKSINNKVLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/381 (56%), Positives = 294/381 (77%), Gaps = 3/381 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+ TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD TRRSLGY YVNF NA
Sbjct: 40 NADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAA 99
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RA+E LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFG
Sbjct: 100 DGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG 159
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVAT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +
Sbjct: 160 NILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAK 218
Query: 197 INKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
I +++ FTNVY KN+ T+++ +K F ++G ITS V+ RD DGKSK FGFVNFE+ +
Sbjct: 219 IEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHN 278
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+A +AV+ L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+
Sbjct: 279 EAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIP 338
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+S DDE+L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++
Sbjct: 339 ESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNR 398
Query: 375 PLYVALAQRKEDRRARLQAQF 395
PLYVALAQRK+ RR +L+AQ
Sbjct: 399 PLYVALAQRKDVRRQQLEAQI 419
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 289/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 167/297 (56%), Gaps = 29/297 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 212 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 166/296 (56%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/386 (56%), Positives = 288/386 (74%), Gaps = 7/386 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F
Sbjct: 62 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEE 217
+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E
Sbjct: 121 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L+ FG++G S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+
Sbjct: 181 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KV
Sbjct: 241 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 301 MME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 359
Query: 398 MRPVAMA---STVAPRMPMYPPGAWI 420
A + P P P G +I
Sbjct: 360 RMASVRAVPNPVINPYQPAPPSGYFI 385
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 159 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 215
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 216 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 274
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 275 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 333
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 334 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 362
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 289/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 164/294 (55%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ ER
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 166/296 (56%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 289/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 164/294 (55%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ ER
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 167/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/380 (57%), Positives = 290/380 (76%), Gaps = 5/380 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+LE V+++ LYD+F+ +G V S+RVCRD T SLGY YVNF + + +A+E
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+T + GKP R+M+S RDPSLRK G+GNI+IKNL AID+K+LH+TFS FGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD NG S+G+GFV F+NE A+ AIE ++GML+ND++VYV + K++R +++ K+KF
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN+ + T++E+ ++ FG+YG ITSAV+ +D +GK + FGFVNFE+ AA+AV+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN +F ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDSIDDEKL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+PFG+ITS KVMRD +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 383 RKEDRRARLQAQFA---QMR 399
RKE RR +L Q QMR
Sbjct: 399 RKEVRRNQLAQQIQARNQMR 418
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ + + +LF + G++ S + +D S + G+G+VNF + AA+A++
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 84 MLNFTPLNGKPIRVMYSH----------------RDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN G+ + V + R L K N+F+KNLD +ID +
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F+ FG I S KV D G S+G+GFV F E A KAI + N ++ K +YV
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 188 LRKQERDTEI 197
RK+ R ++
Sbjct: 398 QRKEVRRNQL 407
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
E +T ++ ++YV L + +E L F G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + +A+E LN K + S+R+ L+ K N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRI----MWSQRDPSLR------------KKGSGNIYI 130
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L + FS FG+I SCKV D +G+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ + +YVAL K+DR+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/436 (51%), Positives = 307/436 (70%), Gaps = 15/436 (3%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNLD +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG S+G+GFV F+ E+A +AI +NGMLLND++V+VGHF +QER+
Sbjct: 123 GNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKN +E LQ+ F ++G S VM D +G+S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+SER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDIIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MR----PVAMAST--VAPRMPMYPPGAWIWLS 423
KPLYVALAQRKE+R+A L +Q+ Q +R P+ T P +P P A +
Sbjct: 361 KPLYVALAQRKEERKAILTSQYMQRLSTLRGLNGPLFPQPTNYFLPAIPQPPARATFYSP 420
Query: 424 AAACSWYEA-RWGSHA 438
+ A RW S++
Sbjct: 421 STVAPVRPAPRWTSYS 436
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 169/299 (56%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FSA G I+S +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGIGNIFIKNLDDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D +G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KN + +DDE L++LFS FG S KVM D
Sbjct: 176 RQEREAEL----------GARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G SRG GFV F EEA +A+ MNGK + + LYV AQ++ +R++ L+ +F QM+
Sbjct: 226 ENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQMK 284
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/424 (52%), Positives = 294/424 (69%), Gaps = 47/424 (11%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 45 SANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF D
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 345 DDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKE 404
Query: 343 -------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR+
Sbjct: 405 SEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 464
Query: 390 RLQA 393
+L+A
Sbjct: 465 QLEA 468
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKN+D + DE+ +++F FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST + A A+ EMN K + + LYV AQ+K +R L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 62/238 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ VTD + +F + G++ S + RD + S G+G+VNFS A A++
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVD 291
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + G+ + R H R+ LRK N+++KNL +D +
Sbjct: 292 EMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + FS FG I S KV D
Sbjct: 352 LRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKK 411
Query: 147 ----LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+ G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 412 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 469
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/399 (54%), Positives = 299/399 (74%), Gaps = 9/399 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RALE
Sbjct: 45 SLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 104
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF+AFGN+LSCKVA
Sbjct: 105 LNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVA 164
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD +G+SKGYGFV ++ E+A+ AI+ +NGMLLNDK+VYVG+ + ++ER +++ K++F
Sbjct: 165 TDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMKAQF 224
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKN TEE+ F ++G++TSAV+ RD +G+S+ FGFVNFE D+A +AVE
Sbjct: 225 TNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEG 284
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
L+ F K+ +V +AQKK+ERE EL+ +EQ E KFQG NLYIKNL+D +DD++L
Sbjct: 285 LHDLDFKGKKLFVSRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRL 344
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ F PFGSITS KVMRD G S+G GFV FS+P+EA++A+ EMN KM+ +KPLYV+LAQ
Sbjct: 345 RTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 404
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRM-------PMY 414
R++ RR +L++Q AQ + M A + PMY
Sbjct: 405 RRDVRRQQLESQIAQRNQIRMQQAAASGLAGGYINGPMY 443
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/422 (51%), Positives = 306/422 (72%), Gaps = 8/422 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N GG + SLYVGDL +VT++ LY F+ G +VS+RVCRD+ TRRSLGY Y+
Sbjct: 1 MNSGGPG---YPLASLYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYI 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A AL+ +N+ + G+PIR+M+S RDP+LRKSG GNIFIKN+D +ID+KAL+D
Sbjct: 58 NFQQPADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKV D G SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF +
Sbjct: 118 TFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Query: 191 QERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+ER+ E KFTN+Y+KN ++ T+E L+++F +G S VMRD G+S+ FGFV
Sbjct: 177 KEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFV 236
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
N+ + +DA +AV+ +NGK+ + K YVG+AQK+ ER+ ELK +F+Q ++ ++QG NL
Sbjct: 237 NYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNL 296
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDDSIDDE+L++ FSP+G+ITS KVM + +G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 297 YVKNLDDSIDDERLRKEFSPYGTITSAKVMTE-AGQSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACS 428
++V +KPLYVALAQR+E+R+A L ++ Q R + + +P + Y + S
Sbjct: 356 RIVATKPLYVALAQRREERKAILTNKYMQ-RMATLRTMPSPIIDSYHQSGYYMTVPQVRS 414
Query: 429 WY 430
+Y
Sbjct: 415 FY 416
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/360 (61%), Positives = 280/360 (77%), Gaps = 4/360 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKPIR+M+
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F
Sbjct: 62 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEE 217
+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K FTNVY+KN E +E
Sbjct: 121 ETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L++ F ++G S VMRD GKSK FGFV++E +DA +AVE +NGK+ K +VG+
Sbjct: 181 SLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KV
Sbjct: 241 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQRKE+R+A L Q+ Q
Sbjct: 301 MLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 359
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 165/273 (60%), Gaps = 16/273 (5%)
Query: 128 LHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L++ FS G +LS +V D+ +S GY +V F A++A++ +N ++ K + +
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+RD + KS NV++KNL +S + L +F +G I S V+ D +G SK +
Sbjct: 62 ----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYA 116
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL + A +F
Sbjct: 117 FVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--T 166
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+YIKN + +DDE LK+LFS FG S KVMRDPSG S+G GFV++ E+A++A+ EM
Sbjct: 167 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM 226
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
NGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 227 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 259
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 72 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 129
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 130 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 189
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 190 GKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 249
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 250 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 307
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 308 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 361
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/375 (57%), Positives = 286/375 (76%), Gaps = 4/375 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKG+GFV F+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + ++ L FG +G + S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K YVG AQKK +R +ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 383 RKEDRRARLQAQFAQ 397
RKE+R+A L Q+ Q
Sbjct: 370 RKEERQAHLTNQYIQ 384
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 166/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + LYD F+ G ++S +V D + S G+G+V+F + A RA
Sbjct: 97 GVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG--SKGHGFVHFETEEAAERA 154
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V R+ L R N++IKN +D K L+ F F
Sbjct: 155 IEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV TD G+SKG+GFV F+ E AQKA++++NG LN K +YVG +K +R
Sbjct: 215 GQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHI 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E LQK F +GTITS VM +G G+S
Sbjct: 275 EL-KRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRM 386
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 164/287 (57%), Gaps = 16/287 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS+ G ILS +V D + +S GY V F+ A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K V + +RD + +S NV++KNL+++ + L +F +G I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTR 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
++ N+YIKN D +DD+ L LF FG + S KVM D G S+G GFV
Sbjct: 187 TKEF----------TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
+F E+A +A+ EMNGK + K +YV AQ+K DR L+ +F Q+
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQV 283
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/408 (54%), Positives = 295/408 (72%), Gaps = 18/408 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD +TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND++V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ F ++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQF----------EQNMKEAADKFQGANL 308
AV+ +NGK + K+ YVG+AQKK ER+ ELKH+F EQ ++ + + QG NL
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNL 306
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
++V +KPLYVALAQRKE+R+A L Q+ Q MAST A P+ P
Sbjct: 366 RIVATKPLYVALAQRKEERQAHLSNQYMQR----MASTSAVSSPVINP 409
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS+ G ILS +V D +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL + A +F N+YIKNL + +DDE+L+ LFS FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEF--TNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/430 (54%), Positives = 300/430 (69%), Gaps = 18/430 (4%)
Query: 3 QVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
+V A +N+ G NA + ++YVGDL V ++ L+++F+ +G V SVRVCRD+ TR
Sbjct: 57 KVAAATRNI-GTETNAPSVSSATIYVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTR 115
Query: 63 RSLGYGYVNFSNAQEAARALEMLNF---TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
RSLGY YVNF + +A RALE +NF KP+R+M+ +RDP++RKSGAGN+FIKNL
Sbjct: 116 RSLGYAYVNFHSMDDAERALETMNFYACPQTRDKPMRLMWKNRDPTIRKSGAGNVFIKNL 175
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
DKAID+K L DTFS FGNILSCKVATD G S GYGFV F+N E A+ AI K+NGMLLND
Sbjct: 176 DKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLND 235
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDG 238
KQVYVG+F +QER+ FTNVY KNL S TEE +++ F YG ITS V D
Sbjct: 236 KQVYVGYFKSRQEREASEETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDE 295
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ K F FVNF + AA+AVE LNG+ F+ K YVG+AQKK+ERE EL+ + E E
Sbjct: 296 NEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAELRRKAENKRAE 355
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358
K+QG NLY++NL D +D+E L++ FS FG++TSC+VMRD G+SRG GFV FSTPEE
Sbjct: 356 ILKKYQGVNLYVRNLPDDMDEEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEE 415
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP------ 412
A++A+ EMNGKM+ KPLYV LAQRKE R+A+L+AQ R A A + R+P
Sbjct: 416 ATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLEAQ----RIAAAAGGL--RIPGAVPGS 469
Query: 413 MYP-PGAWIW 421
+YP PGA ++
Sbjct: 470 LYPQPGAPMF 479
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/382 (58%), Positives = 281/382 (73%), Gaps = 6/382 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL V + QL+ LF+Q+ V +VRVCRD+ + SLGYGYVNF + QEA RALE
Sbjct: 36 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 95
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNFTPL GK IRVM+S+RDPSLRKSG N+F+KNL+ ID K L++ FS+FG ILSCKVA
Sbjct: 96 LNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVA 155
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKGYGFVQ++ EESA+ AI LNGML N+++++VG +R+++R+ KFTN
Sbjct: 156 TDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV-----KFTN 210
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+KNL +E+DL++ F +G ITSAVVMRD DG SKCFGFVNF+ + A AVE N
Sbjct: 211 VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKAN 270
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK DK YVG+AQKK ER+ ELK +F + DK G NLY+KN+DD I+DE LK+
Sbjct: 271 GKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKK 330
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF FG + SCKVM D G S+GSGFV+F+T E RA+ MNG++V KPLYV LAQ K
Sbjct: 331 LFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 390
Query: 385 EDRRARLQAQFAQMRPVAMAST 406
E+R+A L A FAQ R +AMA++
Sbjct: 391 EERKAMLMAHFAQ-RNLAMAAS 411
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 157/299 (52%), Gaps = 19/299 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +LE N+ LY++F+ G ++S +V D S +S GYG+V + + A A
Sbjct: 121 GRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATD-SAGQSKGYGFVQYETEESAEAA 179
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ LN N + + V RD R+ N++IKNL L F+ FG I
Sbjct: 180 INGLNGMLANNRKMFVGLHMRRRD---REVKFTNVYIKNLPTEFSEDDLRQEFAPFGEIT 236
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE------- 192
S V D +G SK +GFV F E A +A+EK NG + DK +YVG +K+E
Sbjct: 237 SAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKT 296
Query: 193 -----RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
RD +++K N+Y+KN+ + +E L+K F E+G + S VM D G+SK GF
Sbjct: 297 RFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGF 356
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQG 305
V+F ++ RA+ +NG+ K YVG AQ K ER+ L F Q N+ AA ++ G
Sbjct: 357 VSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAMAASQYAG 415
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L +++D+ +L LFS + + +V RD SG+S G G+V F + +EA+RAL
Sbjct: 35 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 94
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ K + V + R R
Sbjct: 95 ALNFTPLIGKYIRVMFSNRDPSLR 118
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/379 (55%), Positives = 295/379 (77%), Gaps = 5/379 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT+S LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL + E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARLQAQFAQMRP 400
QRKE+R+A L Q+ + RP
Sbjct: 369 QRKEERKAILTNQYRR-RP 386
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 181/334 (54%), Gaps = 25/334 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+ S KV D NGQS+G+GFV F+ E AQKA++ +NG ++ + +YVG ++ ER +
Sbjct: 215 GNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA-DK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRPSHPVLSS 393
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
FQ Y L ++ + ++ GSIT +
Sbjct: 394 FQQPTSY---LLPAVPQSTAQAVYYSSGSITPMQ 424
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 23/211 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ANV + +L DLF+Q G + SV+V RD S +S G+G+VNF +E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
+YV RK+ER K+ TN Y + S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRPSH 388
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 289/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER
Sbjct: 123 GNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G+S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y +AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 167/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G+ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ER EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RRERAAEL----------GARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY + AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMK 284
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 163/294 (55%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R + GA NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G+S+ +GFV F+ E AQKA+ +NG ++ + +Y ++ ER
Sbjct: 215 GKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL +S ++ L+K F YG ITSA VM +G S
Sbjct: 275 EL-KRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGS-HS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/379 (55%), Positives = 295/379 (77%), Gaps = 5/379 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT+S LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL + E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARLQAQFAQMRP 400
QRKE+R+A L Q+ + RP
Sbjct: 369 QRKEERKAILTNQY-RRRP 386
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 180/331 (54%), Gaps = 25/331 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+ S KV D NGQS+G+GFV F+ E AQKA++ +NG ++ + +YVG ++ ER +
Sbjct: 215 GNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA-DK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRPSHPVLSS 393
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
FQ Y L ++ + ++ GSIT
Sbjct: 394 FQQPTSY---LLPAVPQSTAQAVYYSSGSIT 421
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 23/211 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ANV + +L DLF+Q G + SV+V RD S +S G+G+VNF +E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
+YV RK+ER K+ TN Y + S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRPSH 388
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/409 (52%), Positives = 299/409 (73%), Gaps = 7/409 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+++RRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG S+G+GFV F+ +E+A +AIE +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E +FTNVY+KN + + L++ F +G S VM D G+SK FGFVNFE
Sbjct: 182 EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY--PPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q R M + P + + PPG ++
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ-RLATMRALPGPFLGSFQPPPGYFL 408
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 232/433 (53%), Positives = 300/433 (69%), Gaps = 50/433 (11%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQE-------------------------------------------AARALEMLNF 87
NF + A RAL+ +NF
Sbjct: 58 NFQQPADVVVNVVTQRGFTRMAACVPHTCLANVPTIVPTMLDPRPHSTVNAERALDTMNF 117
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+ G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA D
Sbjct: 118 DMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDE 177
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-FTNV 205
+G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K FTNV
Sbjct: 178 SGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNV 237
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
YVKN E TE+ L+ F +YGTITS VM DGKS+ FGFV FE+ D A +AV LNG
Sbjct: 238 YVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNG 297
Query: 266 KKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE+L++
Sbjct: 298 KEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRK 357
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG++V SKPLYVALAQRK
Sbjct: 358 EFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 416
Query: 385 EDRRARLQAQFAQ 397
EDR+A L +Q+ Q
Sbjct: 417 EDRKAHLASQYMQ 429
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 170/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 140 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGA-SKGYGFVHFETEEAANKS 198
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + + L D F +
Sbjct: 199 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDMTEDKLKDMFEKY 258
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER
Sbjct: 259 GTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQ 318
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL ++ +E L+K F +GTITSA VM + +G+S
Sbjct: 319 QELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTITSAKVMME-EGRS 377
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q M
Sbjct: 378 KGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQRM 431
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/410 (54%), Positives = 302/410 (73%), Gaps = 16/410 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ +VT+S L+++F+ +GQV ++RVCRD +++SLGY YVNF + + +ALE
Sbjct: 48 SLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADGEKALEE 107
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+TP+ GK R+M+S RDPSLR++G+GNIFIKNL AID+K LHDTFSAFG ILSCK+A
Sbjct: 108 LNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTLHDTFSAFGKILSCKIA 167
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
TD NG SKG+GFV ++ ESA+ AIE +NGMLLND +VYVG L K++R +++ + + F
Sbjct: 168 TDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANF 227
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN++ + E+ L+++F +GTI+S + +D GKS+ FGFVNFE +DA +AVE
Sbjct: 228 TNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEE 287
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN K D ++ YVG+AQKKSER LKHQ+E +E +K+QG NL++KNLDDSIDD KL
Sbjct: 288 LNNKDIDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDDAKL 347
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F P+G+ITS KVM D +G S+G GFV +S+PEEA++A+ EM+ +MV KPLYVALAQ
Sbjct: 348 EEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQ 407
Query: 383 RKEDRRARLQAQFA---QMR------PVAMASTVAPRM----PMY-PPGA 418
RKE RR++L Q QMR M VAP P + PPGA
Sbjct: 408 RKEVRRSQLSQQIQARNQMRMQQAAAQGGMGQFVAPMFYGQNPGFLPPGA 457
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 17/200 (8%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDA 256
N ++YV L S TE DL + F G +++ V RD K S + +VNF++ D
Sbjct: 42 NSETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVNFQSHADG 101
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+A+E LN K + S+R+ L+ N++IKNL +
Sbjct: 102 EKALEELNYTPIKGKACRI----MWSQRDPSLRRN------------GSGNIFIKNLHPA 145
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
ID++ L FS FG I SCK+ D +G S+G GFV + E A A+ +NG ++ +
Sbjct: 146 IDNKTLHDTFSAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEV 205
Query: 377 YVALAQRKEDRRARLQAQFA 396
YV K+DR+++++ A
Sbjct: 206 YVGPHLAKKDRQSKMRELIA 225
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 287/384 (74%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + +SLYVGDL +VT++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 AGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF +ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ FTN+YVKNL E+ LQ F E+G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV+ +NGK+ ++ YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSI DEKL+ +FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG +V +
Sbjct: 302 DDSISDEKLRTVFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 174/317 (54%), Gaps = 36/317 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETNEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + SHR+ R++ G NI++KNL +D + L D F
Sbjct: 155 ISTMNGMLLNDRKVFVGHFKSHRE---REAELGAQALAFTNIYVKNLHVDMDEQGLQDLF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
FG +LS KV D +G S+G+GFV F+ E AQKA++ +NG ++ +Q+YVG ++ E
Sbjct: 212 FEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGE 271
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R E+ K +F N+YVKNL +S ++E L+ F YG ITSA VM +G
Sbjct: 272 RQNEL-KRRFEQMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEG- 329
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM--- 296
G SK FGFV F + ++A +AV +NG K YV AQ+K ER+ L +Q+ Q +
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMQRLSTV 389
Query: 297 ----KEAADKFQGANLY 309
+ FQ N Y
Sbjct: 390 QALGRPVMGSFQQPNSY 406
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 161/288 (55%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++TFS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G S+ FGFV+FE ++ A +A+ +NG +D++ +VG + ERE EL
Sbjct: 128 CKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL +D++ L+ LF FG + S KVMRD SG SRG GFV
Sbjct: 184 -------GAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
F EEA +A+ MNGK V + LYV AQ++ +R+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMK 284
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M+ + ++LY+ +L + + L + FSP G I S +V RD + S G ++ F
Sbjct: 1 MQAGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN +++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLR 94
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/406 (55%), Positives = 295/406 (72%), Gaps = 14/406 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGD+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 73 FQTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNLVDAER 132
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + G P R+M+S RDPSLRKSG GNIF+KNLD +ID+KAL+DTFS FGNILS
Sbjct: 133 ALDTMNFTCIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNILS 192
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER-DTEINK 199
CKVA D GQSKGYG+V ++ E+A +AI K+NGML+ +V+VGHF ++QER D E
Sbjct: 193 CKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQERPDIE--- 249
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDAAR 258
+TN YVKNL T+ DL++ F +G + SAVVM+D + + + FGFVN+E++D A
Sbjct: 250 -DWTNCYVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHA 308
Query: 259 AVEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
AVE L+GK F D E YVGKAQK++ERE EL+ +F+Q E +K+QG NLY+KNL
Sbjct: 309 AVEGLSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVNLYVKNL 368
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD + DE+L++ F+ +G+ITS +VMRD +G SRG GFV FSTPEEA+ A+ EMNGK++
Sbjct: 369 DDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLITG 428
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAW 419
KP+YVA AQRKE RRA+L+AQ AQ A V MPM P +
Sbjct: 429 KPVYVAFAQRKEVRRAQLEAQHAQR---ATGVLVNRGMPMGQPPMY 471
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/426 (54%), Positives = 298/426 (69%), Gaps = 32/426 (7%)
Query: 8 GQNVNGG-GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
GQ NGG A A F + SLYVGDL +VT++ L+++FN +G V S+RVCRD TRRSLG
Sbjct: 66 GQRPNGGMNAGAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLG 125
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVN+ Q+A R+L+ LN+T + G+P R+M+ HRDPSLRKSG GNIF+KNLDK ID+K
Sbjct: 126 YAYVNYQGIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDNK 185
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FGNILSCKVA D NG SKGYGFV ++NEESA+ AI+K+NGML+ K VYVG
Sbjct: 186 ALYDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGP 245
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEED-LQKSFGEYGTITSAVVMRDGDGKSKCF 245
F+R+ ERD + ++K+TNVY+KN+ + +E L+++F ++G+ITS VV +D G + F
Sbjct: 246 FIRRAERDN-LAEAKYTNVYIKNMPSAWEDESRLRETFSKFGSITSLVVRKDPKG--RLF 302
Query: 246 GFVNFENSDDAARAVEALNGKKFDD----KE---------------------WYVGKAQK 280
F NF + D A AVEALNGK+ D KE +VG Q
Sbjct: 303 AFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKEEEGQKREGDQILFVGPHQS 362
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
K+ R L+ +FEQ ++ D+FQG NLYIKN+DDSIDDEKL+QLF PFGSITS KVMRD
Sbjct: 363 KAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMRD 422
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF--AQM 398
G+SR GFV F +PEEA++A+ EM+ K+V KPLYV LA+R+E R RLQ +F +
Sbjct: 423 ERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPSL 482
Query: 399 RPVAMA 404
RP A A
Sbjct: 483 RPAAAA 488
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/427 (53%), Positives = 295/427 (69%), Gaps = 56/427 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQA 393
RR++L+A
Sbjct: 474 RRSQLEA 480
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEAS 481
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/427 (53%), Positives = 295/427 (69%), Gaps = 56/427 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQA 393
RR++L+A
Sbjct: 474 RRSQLEA 480
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEAS 481
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/384 (58%), Positives = 289/384 (75%), Gaps = 7/384 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +V ++QL+ +F+Q+ +VSVRVCRD+ + SLGYGYVNF + QEA ALE
Sbjct: 37 SSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALE 96
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF PL+GK IRVM+S+RDPSLRKSG N+F+KNL+ +ID K L++ FS+FG ILSCKV
Sbjct: 97 ALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKV 156
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
ATD GQSKGYGFVQ++ EESAQ AI +LNGML ND++++VG +R++ R+ KFT
Sbjct: 157 ATDSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREV-----KFT 211
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVY+KNL +++DL++ F +G ITSAVVMRD +G SKCFGFVNFE + A AV+
Sbjct: 212 NVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKA 271
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE-AADKFQGANLYIKNLDDSIDDEKL 322
NGK +DK YVG+AQKK+ER+ ELK +F+Q ++ DK G NLY+KN+DDSI+DE L
Sbjct: 272 NGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGL 331
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K LF FG +TSCKVM D G S+GSGFV F+T E A+ MNG++V KPLYV LAQ
Sbjct: 332 KILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQ 391
Query: 383 RKEDRRARLQAQFAQMRPVAMAST 406
KE+RRA L A FAQ R +AMA++
Sbjct: 392 PKEERRAMLMAHFAQ-RNLAMAAS 414
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 158/299 (52%), Gaps = 18/299 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +LE ++ LY++F+ G ++S +V D S +S GYG+V + + A A
Sbjct: 123 GRANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATD-SAGQSKGYGFVQYETEESAQDA 181
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN N + + V R + R+ N++IKNL L F+ FG I S
Sbjct: 182 INRLNGMLANDREMFVGLHMRRRN-REVKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSA 240
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D+NG SK +GFV F+ E A +A++K NG ++NDK +YVG +K ER E+ K+K
Sbjct: 241 VVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAEL-KTK 299
Query: 202 F--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
F N+Y+KN+ +S +E L+ F E+G +TS VM D G+SK GF
Sbjct: 300 FKQEDRDKKVDKPNGINLYLKNIDDSINDEGLKILFEEFGQVTSCKVMVDAQGRSKGSGF 359
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQG 305
V F ++ A+ +NG+ K YVG AQ K ER L F Q N+ AA + G
Sbjct: 360 VLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPKEERRAMLMAHFAQRNLAMAASPYAG 418
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/427 (53%), Positives = 295/427 (69%), Gaps = 56/427 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQA 393
RR++L+A
Sbjct: 474 RRSQLEA 480
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEAS 481
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/422 (51%), Positives = 302/422 (71%), Gaps = 11/422 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F E+A++AIEK+NG+ LND +V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD+ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V ++PLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMR---PVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARWG 435
ALAQRKE+R+A L ++ Q + P + P P P G ++ AA + R
Sbjct: 366 ALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFM----AAVPQTQNRAA 421
Query: 436 SH 437
H
Sbjct: 422 YH 423
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 168/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G + S V+ D +G SK +GFV+F + A RA+E +NG +D + +VG+ + +
Sbjct: 118 TVSAFGNVLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/443 (49%), Positives = 308/443 (69%), Gaps = 22/443 (4%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NATGAG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMY 414
G++V +KPLYVALAQRKE+R+A L Q+ Q MR + A+ P MP
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQP 414
Query: 415 PPGAWIWLSAAACSWYEARWGSH 437
P + + A +W SH
Sbjct: 415 PNRTFYSPNPVAPVRQAPQWTSH 437
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/384 (55%), Positives = 288/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRREFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D S G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--NHGSRGFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 IVTMNGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+G+GFV F+ E AQKA+ +NG + + +YVG ++ ER
Sbjct: 215 GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S +E L++ F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 167/296 (56%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIRGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SRG GFV F EEA +A+ +MNGK V + LYV AQ++ +R+ L+ +F QM+
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMK 284
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/405 (56%), Positives = 291/405 (71%), Gaps = 13/405 (3%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A F ++SLYVGDL +VTDSQL+++FNQ+G V ++R+CRD +TRRSL Y YVN+ N +
Sbjct: 2 AASFSSSSLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPAD 61
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ LN T + GK R+M+S RDPSLRKSG GNIFIKNLDK++DHKAL DTFSAFGN
Sbjct: 62 AERALDTLNNTLVKGKACRIMWSQRDPSLRKSGVGNIFIKNLDKSVDHKALFDTFSAFGN 121
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV TD SKG+GFV +++++SA KAI K+NGM++ND++V+VG F +ER +
Sbjct: 122 ILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKERG-QT 180
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+ K+TNVYVKNLSE EE+L+ YG IT+ +M D KSK FGF NFE D+A
Sbjct: 181 QELKYTNVYVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAK 240
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
VEA NGK F K YVG+AQKK ERE ELKH+FE K+QG NLYIKN+DDSI
Sbjct: 241 NCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKFE-------TKYQGVNLYIKNIDDSI 293
Query: 318 DDEKLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
D +KL+ F+ +G+ITS KVMR D S S+G GFV ++TP+EAS+A+ EM+G+MV +KPL
Sbjct: 294 DSDKLRSTFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPL 353
Query: 377 YVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIW 421
YVA AQRKE RR L+AQ + + + + P MY G +
Sbjct: 354 YVAFAQRKEIRRQHLEAQHNKFK----GNRIQPVPSMYAGGPMFY 394
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/450 (50%), Positives = 304/450 (67%), Gaps = 18/450 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E LQ F ++G I S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ F+P+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q MR + S P +P PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQ-PPAQSP 419
Query: 421 WLSAAACSWYEARWGSHAKFLCADSSARAA 450
+ ++ RW + S R A
Sbjct: 420 YYASGPPVQPPPRWTAQPPRPSCASVVRPA 449
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/387 (55%), Positives = 290/387 (74%), Gaps = 5/387 (1%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N + G AN + SLYVGDL +VT++ LY+ F+ G V+S+RVCRDL TRRSLGY Y
Sbjct: 2 NPSTGAAN---YPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAY 58
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
VNF A +AL+ +NF P+ G+P R+M+ RDPSLRKSG GNIFIKNLDK+ID+K+L+
Sbjct: 59 VNFQQPGHAEKALDTMNFDPIKGRPCRIMWQQRDPSLRKSGVGNIFIKNLDKSIDNKSLY 118
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCK+A D G KGYGFV F+ E++A +AI +++GMLLNDK+V+VG ++
Sbjct: 119 DTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMS 178
Query: 190 KQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
K+ER ++ KFTNVYVKN + +E +++ E G I S VM D +GKSK FGF
Sbjct: 179 KKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGF 238
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V+FE ++A AV LNGK+ + + G+A+K++ER E+K + E+ +E ++FQG N
Sbjct: 239 VSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVN 298
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LYIKNLDD IDDE+L++ FSP+G+I+S KVM+D G S+G GFV FS+PEEA++A+ EMN
Sbjct: 299 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMN 358
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQ 394
G++++SKPLYVALAQR+E+R+A+L AQ
Sbjct: 359 GRILISKPLYVALAQRREERKAQLAAQ 385
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 162/297 (54%), Gaps = 20/297 (6%)
Query: 109 SGAGN-----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNE 162
+GA N +++ +L + L++ FS G++LS +V DL +S GY +V F
Sbjct: 5 TGAANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQP 64
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
A+KA++ +N + + + Q+RD + KS N+++KNL +S + L +
Sbjct: 65 GHAEKALDTMNFDPIKGRPCRIMW----QQRDPSLRKSGVGNIFIKNLDKSIDNKSLYDT 120
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S + +D G K +GFV+FE D A A+ ++G +DK+ +VG+ K
Sbjct: 121 FSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKK 180
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ER + M KF N+Y+KN D +DDE++K++ + G I S KVM DP
Sbjct: 181 ERI--------EKMGTQPKKF--TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE 230
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G S+G GFV+F TPEEA A+ +NGK + + L+ A+++ +R A ++A+ + R
Sbjct: 231 GKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKR 287
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/406 (53%), Positives = 295/406 (72%), Gaps = 9/406 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TRRS Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S DPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G SRG GFV FS+PEEA++A+ EMNG +V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMYPPGAWI 420
+LA RKE+R+A L ++ Q +R V + P P P G ++
Sbjct: 366 SLAHRKEERQAYLTNEYMQRMAGVRAVP-NPVINPYQPAPPSGYFM 410
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL +S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + + D + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPVRIMW----SQHDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRRSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KP+ + +Q R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPVRIMWSQHDPSLR 94
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 297/425 (69%), Gaps = 33/425 (7%)
Query: 8 GQNVNG--GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
GQ NG A+A F + SLYVGDL +VT++ L+++FN +G V S+RVCRD TRRSL
Sbjct: 66 GQRPNGLNAAASAANFVSPSLYVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSL 125
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GY YVN+ Q+A R+L+ LN+T + G+P R+M+ HRDPSLRKSG GNIF+KNLDK ID+
Sbjct: 126 GYAYVNYQGIQDAERSLDTLNYTVIKGQPCRIMWCHRDPSLRKSGNGNIFVKNLDKNIDN 185
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KAL+DTFS FGNILSCKVA D NG SKGYGFV ++NEESA+ AI+K+NGML+ K VYVG
Sbjct: 186 KALYDTFSLFGNILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVG 245
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEE-DLQKSFGEYGTITSAVVMRDGDGKSKC 244
F+R+ ERD + ++K+TNVY+KN+ + +E L+++F +YG+ITS VV +D G +
Sbjct: 246 PFIRRAERDN-LAETKYTNVYIKNMPSAWEDEARLRETFAKYGSITSLVVRKDPKG--RL 302
Query: 245 FGFVNFENSDDAARAVEALNGKKFDD----KE---------------------WYVGKAQ 279
F F NF + D A AVEALNGK+ D KE +VG Q
Sbjct: 303 FAFCNFADHDSAKAAVEALNGKRVTDAGAIKEGEDSGAEEKDEEGQKREGEQILFVGPHQ 362
Query: 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
K+ R L+ +FEQ ++ D+FQG NLYIKN+DDSIDDEKL+QLF PFGSITS KVMR
Sbjct: 363 SKAHRSAMLRAKFEQMNQDRNDRFQGVNLYIKNMDDSIDDEKLRQLFEPFGSITSAKVMR 422
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF--AQ 397
D G+SR GFV F +PEEA++A+ EM+ K+V KPLYV LA+R+E R RLQ +F
Sbjct: 423 DERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRFRLPS 482
Query: 398 MRPVA 402
+RP A
Sbjct: 483 LRPAA 487
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/389 (56%), Positives = 293/389 (75%), Gaps = 5/389 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A N +TSLYVG+L+ +V+++ LYDLF+ +G V S+RVCRD T+ SLGY YVNFS+
Sbjct: 39 AGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDH 98
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +A+E LN+TP+ GK R+M+S RDPSLRK G GNIFIKNL++ ID+KAL DTFS F
Sbjct: 99 EAGKQAIEKLNYTPIKGKLCRIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVF 158
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILS K+ATD G+SKG+GFV F+ E +A +AI+ LNGMLLN +++YV L ++ERD+
Sbjct: 159 GNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDS 218
Query: 196 EINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ ++K FTNVYVKN+ TT+E+ ++ FG+ GT+TS + R DGK K FGFVN+E+
Sbjct: 219 QLEETKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDH 278
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE LNG +F D+E +VG+AQKK ER LK Q+E E K+QG NL++KNL
Sbjct: 279 NDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNL 338
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ F+PFG+ITS KVMR +G S+G GFV FS+PEEA++A+ E N ++V
Sbjct: 339 DDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAG 398
Query: 374 KPLYVALAQRKEDRRARLQAQFA---QMR 399
KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 399 KPLYVAIAQRKDVRRSQLAQQIQARNQMR 427
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/450 (50%), Positives = 306/450 (68%), Gaps = 18/450 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NG++ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MR----PVA-----MASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q MR P+ AS P +P PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQ-PPAQAP 419
Query: 421 WLSAAACSWYEARWGSHAKFLCADSSARAA 450
+ + RW + S R A
Sbjct: 420 YYGSGPPIQPAPRWTAQPPRPSCASVVRPA 449
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/415 (52%), Positives = 301/415 (72%), Gaps = 12/415 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+++RRSLGY Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+P+R+M+S RDP LRKSG GN+FIKNLD +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D NG S+G+GFV F+ +E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN + + L++ F +G S VM D G+SK FGF
Sbjct: 176 RKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E ++QG N
Sbjct: 236 VNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY--PPGAWI 420
G++V +KPLYVALAQRKE+R+A L Q+ Q R M + P + + PPG ++
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATMRALPGPFLGSFQPPPGYFL 408
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/448 (49%), Positives = 309/448 (68%), Gaps = 18/448 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+A +AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A ++QG NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q +R + AS P +P PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQ-PPAQAA 419
Query: 421 WLSAAACSWYEARWGSHAKFLCADSSAR 448
+ +++ RW + + + S R
Sbjct: 420 YYASSPSVQPAPRWTAQPPRVSSASMVR 447
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 168/299 (56%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPVRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R+ L+ +F QM+
Sbjct: 226 DIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMK 284
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/448 (49%), Positives = 309/448 (68%), Gaps = 18/448 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+P+R+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+A +AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ A ++QG NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q +R + AS P +P PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVPQ-PPAQAA 419
Query: 421 WLSAAACSWYEARWGSHAKFLCADSSAR 448
+ +++ RW + + + S R
Sbjct: 420 YYASSPSVQPAPRWTAQPPRVSSASMVR 447
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 168/299 (56%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPVRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R+ L+ +F QM+
Sbjct: 226 DIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMK 284
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 291/409 (71%), Gaps = 20/409 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID K L+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND +V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ FG +G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-----------GAN 307
AVE +NGK + K+ YVG+AQKK ER+ ELKH+F Q MK+ K + G N
Sbjct: 247 AVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVN 305
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
GK+V +KPLYVALAQRKE+R+A L Q+ Q MAST A P+ P
Sbjct: 365 GKIVATKPLYVALAQRKEERQAHLSNQYMQR----MASTSAGPNPVVSP 409
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D + +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL A + N+YIKNL + +DDE+L+ LF FG S KVM D
Sbjct: 177 RDRQAEL----------GARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R G V
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRD--RITRRSLGYASVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/379 (55%), Positives = 295/379 (77%), Gaps = 5/379 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT+S LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL + E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARLQAQFAQMRP 400
QRKE+R+A L Q+ + RP
Sbjct: 369 QRKEERKAILTNQY-RRRP 386
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 180/331 (54%), Gaps = 25/331 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GN+ S KV D NGQS+G+GFV F+ E AQKA++ +NG ++ + +YVG ++ ER +
Sbjct: 215 GNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA-DK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRPSHPVLSS 393
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
FQ Y L ++ + ++ GSIT
Sbjct: 394 FQQPTSY---LLPAVPQSTAQAVYYSSGSIT 421
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 23/211 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ANV + +L DLF+Q G + SV+V RD S +S G+G+VNF +E
Sbjct: 185 ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD-SNGQSRGFGFVNFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDERLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
+YV RK+ER K+ TN Y + S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRPSH 388
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/380 (57%), Positives = 287/380 (75%), Gaps = 5/380 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T SLGY YVNF + + +A+E
Sbjct: 39 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQ 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+T + GKP R+M+S RDPSLRK G+GNI+IKNL AID+K+LH+TFS FGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD NG S+G+GFV F+NE A+ AIE +NGML+ND++VYV + K++R +++ K+KF
Sbjct: 159 TDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKF 218
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKN+ T++E+ ++ F +YG ITSAV+ +D +GK + FGF+NFE+ AARAV+
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDE 278
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN F + YVG+AQKK ER+ ELK Q+E E K+QG NL+IKNLDDSIDDEKL
Sbjct: 279 LNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKL 338
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K F+PFG+ITS KVM+D +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 339 KDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQ 398
Query: 383 RKEDRRARLQAQFA---QMR 399
RKE RR +L Q QMR
Sbjct: 399 RKEVRRNQLAQQIQARNQMR 418
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ + + LF++ G++ S + +D S + G+G++NF + AARA++
Sbjct: 219 TNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKD-SEGKLRGFGFINFEDHSTAARAVD 277
Query: 84 MLNFTPLNGKPI---RVMYSH-------------RDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN + G+ + R H R L K N+FIKNLD +ID +
Sbjct: 278 ELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEK 337
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L D F+ FG I S KV D G S+G+GFV F E A KAI + N L+ K +YV
Sbjct: 338 LKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIA 397
Query: 188 LRKQERDTEI 197
RK+ R ++
Sbjct: 398 QRKEVRRNQL 407
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
E +T ++ ++YV L S +E L F G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + +A+E LN K + S+R+ L+ K N+YI
Sbjct: 87 HDHEAGRKAIEQLNYTLIKGKPCRI----MWSQRDPSLR------------KKGSGNIYI 130
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L + FS FG+I SCKV D +G+SRG GFV F +A A+ +NG +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGML 190
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ + +YVA K+DR+++L+
Sbjct: 191 MNDQEVYVAWHVSKKDRQSKLE 212
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/427 (51%), Positives = 294/427 (68%), Gaps = 50/427 (11%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N NQ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 43 NPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 102
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 103 DGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG 162
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 163 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 222
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVYVKN+ T+E+ ++ FG+YG ITSA + RD GKS+ FGFVN+ +
Sbjct: 223 FEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQ 282
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+A AV+ LN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 283 NAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLT 342
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGI------------------------------ 344
D +DD+KL++LFSPFG+ITS KVMRD G+
Sbjct: 343 DDVDDDKLRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKA 402
Query: 345 ------------------SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 403 EDEEKTETKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 462
Query: 387 RRARLQA 393
R+++L+A
Sbjct: 463 RKSQLEA 469
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 160/300 (53%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN+D + DE+ ++LF +G ITS + R
Sbjct: 218 DRQSKFEEMKANF-------------TNVYVKNIDPEVTDEEFRELFGKYGDITSATISR 264
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D SG SRG GFV + + A A+ E+N K S+ LYV AQ+K +R L+ Q+ R
Sbjct: 265 DDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAAR 324
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 65/241 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ VTD + +LF + G + S + RD S + S G+G+VN+ + Q A A++
Sbjct: 231 TNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGK-SRGFGFVNYVDHQNAQSAVD 289
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLR------------KSGAGNIFIKNLDKAIDHKA 127
LN + + + R H R+ LR K N+++KNL +D
Sbjct: 290 ELNDKDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDK 349
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + FS FG I S KV D
Sbjct: 350 LRELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKTE 409
Query: 147 -------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
+ G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++
Sbjct: 410 TKKPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEA 469
Query: 200 S 200
S
Sbjct: 470 S 470
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 300/409 (73%), Gaps = 12/409 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA---QEAAR 80
+SLYVGDLE +VT++QL++LF+ +G V S+RVCRD TRRSLGY YVN+++A Q A R
Sbjct: 21 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAER 80
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+E LN+ LNGKP+R+M+SHRDPS RKSG GNIFIKNLDK+ID KALHDTFSAFG ILS
Sbjct: 81 AMETLNYHVLNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKSIDAKALHDTFSAFGKILS 140
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD NG SKGYGFV F+++ +A +AI+ +N + K VYVG F ++ +R K
Sbjct: 141 CKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQ--GKD 198
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNV+VKNL +++L K E+G +TSAVVM+D G SK FGF+NF++++ AA+ V
Sbjct: 199 VYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCV 258
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EALN K+ K Y G+AQKK+ERE L+ + E++ +E K+QG NLY+KNL D +DD+
Sbjct: 259 EALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDD 318
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L+ LF+ G+ITSCKVM+D SG S+G GFV F++ +EA+RA+ EMNGKMV KPLYVAL
Sbjct: 319 ALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVAL 378
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM-----YPPGAWIWLSA 424
AQRK+ RRA+L+A Q R + M + P PM Y PGA + +A
Sbjct: 379 AQRKDVRRAQLEAN-VQNR-LGMGAMTRPPNPMTGMGPYGPGAMPFFAA 425
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/397 (54%), Positives = 300/397 (75%), Gaps = 7/397 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ L++ F+ +G ++S+RVCR + TR SLGY YVNF N +A RAL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L G P+R+M+S RDPSLRKSG GN+FIKNLD++ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDILKGHPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D G SKGYGFV F+ ++SA ++IEK+NGMLLN K+V+VG F+ + +R+ E+ + +
Sbjct: 123 QDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLY 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN+ E+ E++L + F +YGTITS VM DG S+ FGFV FE+ +A +AV
Sbjct: 183 TNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTE 242
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GKK + K +YV +AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE+
Sbjct: 243 LHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+I S KVM D G S+G GFV FS+PEEA++A+ +MNG++V +KPLYV LA
Sbjct: 303 LRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLA 361
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
QRK+DR+A L +Q++Q ++ P+Y PGA
Sbjct: 362 QRKKDRKAHLDSQYSQRNTNMRMQSIG---PIYQPGA 395
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FS G+I S +V R + S G +V F +A RAL
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALD 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN ++ P+ + +QR R
Sbjct: 62 TMNFDILKGHPMRIMWSQRDPSLR 85
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/426 (52%), Positives = 294/426 (69%), Gaps = 49/426 (11%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF D
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 345 DDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKP 404
Query: 343 ---------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ R
Sbjct: 405 KESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 464
Query: 388 RARLQA 393
R++L+A
Sbjct: 465 RSQLEA 470
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKN+D + DE+ +++F FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST + A A+ EMN K + + LYV AQ+K +R L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 64/240 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ VTD + +F + G++ S + RD + S G+G+VNFS A A++
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVD 291
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + G+ + R H R+ LRK N+++KNL +D +
Sbjct: 292 EMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + FS FG I S KV D
Sbjct: 352 LRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEP 411
Query: 147 ------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+ G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 412 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 471
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/384 (55%), Positives = 290/384 (75%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 164/294 (55%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ ER
Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K +F N+YVKNL +S ++ L+K F YG ITSA VM +G G S
Sbjct: 275 EL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 165/296 (55%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 291/409 (71%), Gaps = 20/409 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID K L+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND +V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ FG +G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-----------GAN 307
AVE +NGK + K+ YVG+AQKK ER+ ELKH+F Q MK+ K + G N
Sbjct: 247 AVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKHKIERVPQDRSVRCKGVN 305
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
GK+V +KPLYVALAQRKE+R+A L Q+ Q MAST A P+ P
Sbjct: 365 GKIVATKPLYVALAQRKEERQAHLSNQYMQR----MASTSAGPNPVVSP 409
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D + +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL A + N+YIKNL + +DDE+L+ LF FG S KVM D
Sbjct: 177 RDRQAEL----------GARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+R G V
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRD--RITRRSLGYASVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/393 (56%), Positives = 295/393 (75%), Gaps = 4/393 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L++ F++ G V+S+RVCRDL T+RSLGY YVNF +A RAL+
Sbjct: 16 SLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDT 75
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N+ P+ G+P R+M+S RDPSLR+SG GNIFIKNLDK+IDHKAL+DTFSAFGNILSCKVA
Sbjct: 76 MNYEPIKGQPCRIMWSQRDPSLRRSGVGNIFIKNLDKSIDHKALYDTFSAFGNILSCKVA 135
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD-TEINKSKFT 203
TD N SKG+GFV FD +E+A AIEK+NG LLND +VYVG F+ +++R T +T
Sbjct: 136 TDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDRSHTNGFNQHYT 195
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV++KN E T+ L F +YG+I SAVVM+DG+G SK FGFV+FE+ + A+ AV+A+
Sbjct: 196 NVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAV 255
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+ + ++ Y G+AQKK+ER EL + E+ +E ++QG NLYIKNL+D++ +EKLK
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEKLK 315
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FGSITS K+M D G S+G GFV FS+PEEA++A+ EMNG++VVSKPLYVALAQR
Sbjct: 316 SEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQR 375
Query: 384 KEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
KE+R+A L AQ +M+ +A +M MYPP
Sbjct: 376 KEERQAHLAAQ--RMQRIARGIPQG-QMQMYPP 405
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 17/198 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++++ + + TD+ LYD+F + G +VS V +D S G+G+V+F + + A+ A++
Sbjct: 195 TNVFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKD-GEGLSKGFGFVSFESHEAASAAVQ 253
Query: 84 MLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
++ + +NG+ + R R L + N++IKNL+ + +
Sbjct: 254 AVHNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEEK 313
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG+I S K+ TD G SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 314 LKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALA 373
Query: 188 LRKQERDTEINKSKFTNV 205
RK+ER + + +
Sbjct: 374 QRKEERQAHLAAQRMQRI 391
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/405 (52%), Positives = 297/405 (73%), Gaps = 7/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGN+LS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NG+ LND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD+ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMR---PVAMASTVAPRMPMYPPGAWI 420
ALAQRKE+R+A L ++ Q + P + P P P G ++
Sbjct: 366 ALAQRKEERQAYLTNEYMQRKASVPAVPNPVINPYQPAPPSGYFM 410
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G + S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNVLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMK 284
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/382 (55%), Positives = 295/382 (77%), Gaps = 6/382 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 134 TMNFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 193
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 194 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 252
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL E+ LQ F ++G + S VMRD +G+S+ FGFVNFE ++A +AV+
Sbjct: 253 FTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 312
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+DE+
Sbjct: 313 HMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDER 372
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 373 LKEVFSAYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 431
Query: 382 QRKEDRRARLQAQFAQM--RPV 401
QRKE+R+A L Q+ + RPV
Sbjct: 432 QRKEERKAILTNQYRRQLSRPV 453
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 170/311 (54%), Gaps = 16/311 (5%)
Query: 90 LNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-N 148
L G P + DP + ++++ +L + L++ FS G ILS +V D+
Sbjct: 52 LLGDPFLGALNTMDPGGQACALSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVAT 111
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208
+S GY ++ F A++A++ +N ++ + + + RD + KS N+++K
Sbjct: 112 RRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRI----MWSHRDPGLRKSGMGNIFIK 167
Query: 209 NLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
NL S + L +F +G+I S+ V+ + G S+ FGFV+FE + A +A+ +NG
Sbjct: 168 NLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 226
Query: 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
+D++ +VG + + +RE EL A N+Y+KNL +D++ L+ LFS
Sbjct: 227 NDRKVFVGHFKSRQKREAEL----------GARALGFTNVYVKNLHMDMDEQGLQDLFSQ 276
Query: 329 FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
FG + S KVMRD +G SRG GFV F EEA +A+ MNGK V + LYV AQ++ +R+
Sbjct: 277 FGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQ 336
Query: 389 ARLQAQFAQMR 399
+ L+ +F Q++
Sbjct: 337 SELKRRFEQVK 347
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 119/210 (56%), Gaps = 23/210 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ++ + L DLF+Q G++ SV+V RD S +S G+G+VNF +E
Sbjct: 248 ARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRD-SNGQSRGFGFVNFEKHEE 306
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N + G+ + V + R L++ N+++KNLD
Sbjct: 307 AQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDD 366
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ + L + FSA+G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 367 SINDERLKEVFSAYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 425
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
+YV RK+ER K+ TN Y + LS
Sbjct: 426 LYVALAQRKEER-----KAILTNQYRRQLS 450
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/384 (55%), Positives = 287/384 (74%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ F SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F +G + S VMRD G S+ FGFVNF+
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 169/295 (57%), Gaps = 25/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A +
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQQ 153
Query: 81 ALEMLNFTPLNGKPIRVMY--SHRDPSL----RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + S R+ + R NI++KNL +D + L D FS
Sbjct: 154 AITTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSR 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +LS KV D +G S+G+GFV F E AQKA+ +NG ++ + +YVG ++ ER
Sbjct: 214 FGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQ 273
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+E+ K +F N+YVKNL +S +E L+K F YG ITSA VM +G G
Sbjct: 274 SEL-KRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GH 331
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 170/296 (57%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE+EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REVEL----------GARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SRG GFV F EEA +A+++MNGK V + LYV AQ++ +R++ L+ +F Q++
Sbjct: 229 HSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLK 284
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 289/391 (73%), Gaps = 14/391 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ NA +A RAL
Sbjct: 9 SSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN TP+ GKP R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCK
Sbjct: 69 DTLNNTPIRGKPCRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKS 200
V TD N SKG+GFV +++++SA KAI K+NGM++N ++V+VG F +ER TEI
Sbjct: 129 VVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEI--- 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
KFTNV+ KNL+E T + L++ YGTIT+ +M D GKSK F F NFE++D A
Sbjct: 186 KFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNV 245
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE NGK F K Y G+AQKK ERE ELKH FE K+QG NLYIKN+DDSID+
Sbjct: 246 VEIENGKVFHGKPLYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDN 298
Query: 320 EKLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+KL+++FS FG+ITS VM+ D + S+G GFV +++P+EA+RA+ EMNG+M+ +KPLYV
Sbjct: 299 DKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYV 358
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAP 409
ALAQRK+ RRA+L+ Q Q M T+AP
Sbjct: 359 ALAQRKDIRRAQLEMQHQQKFKAGMRQTMAP 389
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/434 (51%), Positives = 302/434 (69%), Gaps = 18/434 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NG++ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MR----PVA-----MASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q MR PV AS P +P PP
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPVLGSFQQPASYFLPAVPQ-PPAQAQ 419
Query: 421 WLSAAACSWYEARW 434
+ + RW
Sbjct: 420 YYGSGPPIQPAPRW 433
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/382 (58%), Positives = 281/382 (73%), Gaps = 6/382 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL V + QL+ LF+Q+ V +VRVCRD+ + SLGYGYVNF + QEA RALE
Sbjct: 3 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNFTPL GK IRVM+S+RDPSLRKSG N+F+KNL+ ID K L++ FS+FG ILSCKVA
Sbjct: 63 LNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD GQSKGYGFVQ++ EESA+ AI LNGML N+++++VG +R+++R+ KFTN
Sbjct: 123 TDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREV-----KFTN 177
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+KNL +E+DL++ F +G ITSAVVMRD DG SKCFGFVNF+ + A AVE N
Sbjct: 178 VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKAN 237
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK DK YVG+AQKK ER+ ELK +F + DK G NLY+KN+DD I+DE LK+
Sbjct: 238 GKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKK 297
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF FG + SCKVM D G S+GSGFV+F+T E RA+ MNG++V KPLYV LAQ K
Sbjct: 298 LFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 357
Query: 385 EDRRARLQAQFAQMRPVAMAST 406
E+R+A L A FAQ R +AMA++
Sbjct: 358 EERKAMLMAHFAQ-RNLAMAAS 378
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 156/297 (52%), Gaps = 15/297 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +LE N+ LY++F+ G ++S +V D S +S GYG+V + + A A
Sbjct: 88 GRANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATD-SAGQSKGYGFVQYETEESAEAA 146
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LN N + + V R R+ N++IKNL L F+ FG I S
Sbjct: 147 INGLNGMLANNRKMFVGLHMRRRD-REVKFTNVYIKNLPTEFSEDDLRQEFAPFGEITSA 205
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE--------- 192
V D +G SK +GFV F E A +A+EK NG + DK +YVG +K+E
Sbjct: 206 VVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRF 265
Query: 193 ---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
RD +++K N+Y+KN+ + +E L+K F E+G + S VM D G+SK GFV+
Sbjct: 266 GRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVS 325
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ-NMKEAADKFQG 305
F ++ RA+ +NG+ K YVG AQ K ER+ L F Q N+ AA ++ G
Sbjct: 326 FATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAMAASQYAG 382
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L +++D+ +L LFS + + +V RD SG+S G G+V F + +EA+RAL
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ K + V + R R
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLR 85
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/412 (51%), Positives = 297/412 (72%), Gaps = 5/412 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY F+ G ++S+RVCRD+ TRRSLGY Y+NF +A
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAEC 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV D G SKGYGFV F+ EE+A +AIE +NGMLLND++V+VGHF ++ER+ E+
Sbjct: 128 CKVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSK 186
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KFTN+Y+KN E +E L++ F +G S VM+D G+S+ FGFVNF + +DA +
Sbjct: 187 ALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K YVG+AQK+ ER+ ELK +FE ++ ++QG NLY+KNLDDSID
Sbjct: 247 AVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ F+P+G+ITS KVM D SRG GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWY 430
ALAQR+E+R+A L ++ Q R + + +P + Y + S+Y
Sbjct: 366 ALAQRREERKAILTNKYMQ-RLATLRTMTSPIIDSYQQAGYYMTVPQPRSFY 416
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 27/218 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G+ A +F T++Y+ + + D +L ++F G+ +SVRV +D RS G+G+VNF++
Sbjct: 184 GSKALKF--TNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKD-ERGRSRGFGFVNFAH 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 241 HEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVK 299
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD +ID + L F+ +G I S KV TD QS+G+GFV F + E A KA+ ++NG ++
Sbjct: 300 NLDDSIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
K +YV R++ER K+ TN Y++ L+ T
Sbjct: 359 ATKPLYVALAQRREER-----KAILTNKYMQRLATLRT 391
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M + + A+LY+ +L + + L Q FSP G I S +V RD + S G ++ F
Sbjct: 1 MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQR 383
P +A AL MN ++ +P+ + +QR
Sbjct: 61 QPADAECALDTMNYDVIKGRPIRIMWSQR 89
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/422 (52%), Positives = 300/422 (71%), Gaps = 13/422 (3%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + +SLYVGDL +VT++ LY+ F+ +G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 AGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNLS E+ LQ F +G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGAQALEFTNIYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV+ +NGK+ ++ YVG+AQK++ER+ ELK +FEQ ++ +++G NLY+KNL
Sbjct: 242 EEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSI DEKL+ +FSP+G ITS KVM + S+G GFV FS+PEEA++A+ EMNG +V +
Sbjct: 302 DDSISDEKLRTVFSPYGVITSAKVMTE-GDHSKGFGFVCFSSPEEATKAVTEMNGCIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQF--------AQMRPVAMASTVAPRMPMYPPGAWIWLSAA 425
KPLYVALAQRKE+R+A L Q+ A RPV + S P P GA A
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMKRLSTVQALSRPV-LGSFQQPNSYFLPTGAQPPAQAP 419
Query: 426 AC 427
C
Sbjct: 420 CC 421
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/398 (55%), Positives = 293/398 (73%), Gaps = 5/398 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF +A RAL+
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DTFS FGNILSCKVA
Sbjct: 79 MNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVA 138
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R E+ ++ +F
Sbjct: 139 NDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMARLREMGETTRRF 198
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV FEN +DA +AV
Sbjct: 199 TNVYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTE 258
Query: 263 LNGKKF--DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
++ + +++ YV +AQKK+ER ELK ++EQ E ++QG NLY+KNLDD+++D+
Sbjct: 259 MHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDD 318
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVAL 378
Query: 381 AQRKEDRRARLQAQFAQ-MRPVAMASTVAPRMPMYPPG 417
AQRKEDR+A+L +Q+ Q + + M + +Y PG
Sbjct: 379 AQRKEDRKAQLASQYMQRLASIRMHNAGTMHGTVYTPG 416
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/379 (55%), Positives = 287/379 (75%), Gaps = 4/379 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY F+ G ++S+RVCRD+ TRRSLGY YVNF +A
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAEC 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +N+ + G+PIR+M+S RDP LRKSG GNIFIKN+D++ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV D G SKGYGFV F+ +E+A +AIE +NGMLLND++V+VGHF ++ER+ E
Sbjct: 128 CKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSK 186
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KFTNVY+KN E T+E L++ F +G S VM+D G+S+ FGFVN+ + +DA +
Sbjct: 187 AMKFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV +NGK+ + K YVG+AQK+ ER+ ELK +F+Q ++ ++QG NLY+KNLDDSID
Sbjct: 247 AVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ F+P+G+ITS KVM D S S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKEFAPYGTITSAKVMTDGSQ-SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQ 397
ALAQR+E+R+A L ++ Q
Sbjct: 366 ALAQRREERKAILTNKYMQ 384
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 27/218 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G+ A +F T++Y+ + + TD +L ++F+ G+ +SVRV +D RS G+G+VN+++
Sbjct: 184 GSKAMKF--TNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAH 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A+ +N +NGK + V + + D R G N+++K
Sbjct: 241 HEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGV-NLYVK 299
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD +ID + L F+ +G I S KV TD QSKG+GFV F + E A KA+ ++NG ++
Sbjct: 300 NLDDSIDDERLRKEFAPYGTITSAKVMTD-GSQSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
K +YV R++ER K+ TN Y++ L+ T
Sbjct: 359 ATKPLYVALAQRREER-----KAILTNKYMQRLATLRT 391
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M + + A+LY+ +L + + L Q FSP G I S +V RD I+R G +V
Sbjct: 1 MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRD--IITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F P +A AL MN ++ +P+ + +QR
Sbjct: 59 FQQPADAECALDTMNYDVIKGRPIRIMWSQR 89
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/379 (56%), Positives = 284/379 (74%), Gaps = 4/379 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL +NF + GKP+R+M+S RDPSLRK G GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L + FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQ 397
ALAQRKE+R+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A+ +N ++ K + + +RD + K N++VKNL +S + L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRIMW----SQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
F P++A AL MN ++ KPL + +QR R R
Sbjct: 59 FQHPKDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKR 96
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/422 (53%), Positives = 297/422 (70%), Gaps = 22/422 (5%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RV RD +TRRSLGY VNF ++A R
Sbjct: 8 YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLD++ID K L+DTFSAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ +E A++AIEK+NGM LND++V+VG F +++R E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KNL E +E LQ F +G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQF----------EQNMKEAADKFQGANL 308
AV+ +NGK + K+ YVG+AQKK ER+ ELKH+F EQ ++ + + QG NL
Sbjct: 247 AVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNL 306
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNLDD IDDE+L++ FSPFG+ITS KV + G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACS 428
++V +KPLYVALAQRKE+R+A L Q+ Q MAST A + PG + A S
Sbjct: 366 RIVATKPLYVALAQRKEERQAHLSNQYMQR----MASTSA----VPNPGINPFQPAQGLS 417
Query: 429 WY 430
Y
Sbjct: 418 GY 419
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D +S GY V F
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
E A++A++ +N ++ K V + +RD + KS N++VKNL S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE ++A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
+R+ EL + A +F N+YIKNL + +DDE+L+ LFS FG S KVM D
Sbjct: 177 RDRQAELGAR--------AKEF--TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M + + A+LY+ +L + + L + FSP G I S +V RD + S G V F
Sbjct: 1 MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
E+A RAL MN ++ KP+ + +QR R
Sbjct: 61 QLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/384 (55%), Positives = 287/384 (74%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G+S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y +AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD KL++ FSP+G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDGKLRKEFSPYGVITSAKVMTEGSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 168/299 (56%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G+ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ER EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RRERAAEL----------GARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY + AQ++ +R+ L+ +F QM+
Sbjct: 226 SSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQMK 284
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 163/293 (55%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETYEAAQQA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R + GA NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G +LS KV D +G+S+ +GFV F+ E AQKA+ +NG ++ + +Y ++ ER
Sbjct: 215 GKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQN 274
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ + S++ N+YVKNL +S + L+K F YG ITSA VM +G SK
Sbjct: 275 ELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTEGS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRV 386
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/388 (56%), Positives = 288/388 (74%), Gaps = 24/388 (6%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K++
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKL-------- 169
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
FTNVYVKN E T++ L++ F +YGTITS VM DGKS+ FGFV F
Sbjct: 170 -----------FTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAF 218
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY
Sbjct: 219 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLY 278
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 279 VKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGR 337
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQ 397
++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 338 IIVTKPLYVALAQRKEDRKAHLASQYMQ 365
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 176/323 (54%), Gaps = 48/323 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ +N LNGK + N+++KN + + L + F +G I S
Sbjct: 156 IDRVNGMLLNGKKLFT---------------NVYVKNFGEDMTDDKLKEMFEKYGTITSH 200
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEI--- 197
KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER E+
Sbjct: 201 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 260
Query: 198 ---------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+SK FGFV
Sbjct: 261 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 319
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + AN+
Sbjct: 320 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL---------ANM 370
Query: 309 YIKNLDDSIDDEKLKQLFSPFGS 331
+ +++ Q+F P G+
Sbjct: 371 RM---------QQMGQIFQPGGA 384
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 154/289 (53%), Gaps = 37/289 (12%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ +
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFT---------------- 171
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
N+Y+KN + + D+KLK++F +G+ITS KVM G SRG GFV
Sbjct: 172 ---------------NVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 216
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 217 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 265
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/379 (56%), Positives = 284/379 (74%), Gaps = 4/379 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL +NF + GKP+R+M+S RDPSLRK G GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALHTMNFDVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L + FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLWKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQ 397
ALAQRKE+R+A L ++ Q
Sbjct: 366 ALAQRKEERQAYLTNEYMQ 384
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A+ +N ++ K + + +RD + K N++VKNL +S + L
Sbjct: 62 PKDAEHALHTMNFDVIKGKPLRIMW----SQRDPSLRKRGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
F P++A AL MN ++ KPL + +QR R R
Sbjct: 59 FQHPKDAEHALHTMNFDVIKGKPLRIMWSQRDPSLRKR 96
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/388 (55%), Positives = 293/388 (75%), Gaps = 7/388 (1%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GGG + SLYVGDL+ ++T++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 GGGPT---YPCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNF 60
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTF
Sbjct: 61 QQPADAERALDTMNFDTIKGKPMRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTF 120
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
SAFGNILSCKVA D G SKG+GFV F+ +E+A +A+ K+NGM+LN K+VYVG F+ + E
Sbjct: 121 SAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSE 180
Query: 193 RDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
R + ++ +FTN+YVKN + ++ L+ F +YG + SA VM D G S+ FGFV++
Sbjct: 181 RLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSY 240
Query: 251 ENSDDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E D A +A E +N + DD + YVG+AQKK+ER+ ELK +FE+ +E ++QG NLY
Sbjct: 241 EEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVNLY 300
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLD +ID+E L++ FS FG+ITS KVM + +G S+G GFV FS+PEEA++A+ EMNG+
Sbjct: 301 VKNLDSTIDEEILRKEFSQFGTITSSKVMTE-NGRSKGFGFVCFSSPEEATKAVTEMNGR 359
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+VVSKPLYVALAQRKEDR+A+L +Q+ Q
Sbjct: 360 IVVSKPLYVALAQRKEDRKAQLASQYMQ 387
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 183/331 (55%), Gaps = 30/331 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V +D T S G+G+V+F + A A
Sbjct: 98 GVGNVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQD-ETGSSKGFGFVHFETQEAADEA 156
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+ +N LNGK + V + R L G NI++KN D L D F +
Sbjct: 157 MAKVNGMMLNGKKVYVGRFVPRSERLAAMGEAQKRFTNIYVKNFGDKWDDDKLRDFFEKY 216
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G ++S KV TD G S+G+GFV ++ +SA KA E++N M ++D +++YVG +K ER
Sbjct: 217 GKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQ 276
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K+KF N+YVKNL + EE L+K F ++GTITS+ VM + +G+
Sbjct: 277 AEL-KAKFEKIKQERIQRYQGVNLYVKNLDSTIDEEILRKEFSQFGTITSSKVMTE-NGR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM----- 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ +L Q+ Q M
Sbjct: 335 SKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRM 394
Query: 297 --KEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+ FQG++ ++ ++ ++ Q+
Sbjct: 395 PAPQPNQMFQGSSYFMPSMQPRYFPSQMAQV 425
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 159/289 (55%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +LD I L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 13 SLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 72
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + K + + +RD + KS NV++KNL +S + + +F +G I S
Sbjct: 73 MNFDTIKGKPMRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAIYDTFSAFGNILS 128
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK FGFV+FE + A A+ +NG + K+ YVG+ +SER
Sbjct: 129 CKVAQDETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAA---- 184
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
M EA +F N+Y+KN D DD+KL+ F +G + S KVM D G SRG GFV
Sbjct: 185 ----MGEAQKRF--TNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFV 238
Query: 352 AFSTPEEASRALLEMNGKMVV-SKPLYVALAQRKEDRRARLQAQFAQMR 399
++ P+ A +A EMN V + +YV AQ+K +R+A L+A+F +++
Sbjct: 239 SYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIK 287
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/416 (52%), Positives = 296/416 (71%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AIEK+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KPL + +QR R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLR 94
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/380 (56%), Positives = 290/380 (76%), Gaps = 5/380 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 68 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK- 199
CK+A+D NG SKGYGFV F+ EE+A++AIEK+NGMLLN K+VYVG F+ ++ER +
Sbjct: 128 CKIASDENG-SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDK 186
Query: 200 -SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN + ++ +++ F +G I SA VM D GKS+ FGFV++E + A +
Sbjct: 187 MKRFNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEK 246
Query: 259 AVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AV+ LNG + K Y G+AQKK+ER+ ELK +FE+ E +++QG NLY+KNLDD +
Sbjct: 247 AVDNLNGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVNLYVKNLDDVV 306
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FS FG+ITS +VM + G S+G GFV FS+PEEA++A+ EMNG+++VSKPLY
Sbjct: 307 DDERLRKEFSQFGTITSARVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLY 365
Query: 378 VALAQRKEDRRARLQAQFAQ 397
VALAQRKEDRRA L +Q+ Q
Sbjct: 366 VALAQRKEDRRAHLASQYMQ 385
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L+ V D +L F+Q G + S RV + RS G+G+V FS+ +EA
Sbjct: 290 NRYQGVNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGG--RSKGFGFVCFSSPEEA 347
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 348 TKAVTEMNGRIIVSKPLYVALAQR 371
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/416 (52%), Positives = 296/416 (71%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AIEK+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KPL + +QR R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLR 94
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/431 (51%), Positives = 299/431 (69%), Gaps = 19/431 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ PL G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN T E L++ F E+G I SA VM+D +GKSK FGFV + + D A AV +
Sbjct: 193 NLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL----QAQFAQMR-PVAMASTVAPRMP-------MYPP---GAWIWLSAAAC 427
RKEDRRA+L Q + AQ R PVA ++ P +P +PP + ++A
Sbjct: 373 RKEDRRAKLIEEHQQRLAQYRAPVA---SMIPAVPGHAAPHNYFPPAFQAQRFYHPSSAV 429
Query: 428 SWYEARWGSHA 438
+ RW A
Sbjct: 430 LSSQPRWNRAA 440
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 163/298 (54%), Gaps = 26/298 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N+++KN D++ L + FS
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV + + + A+ A+ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Query: 195 TEINKSKF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
E+ K K N+YVKNL ++ ++ L+++F +G+ITSA VM+D +
Sbjct: 275 EEL-KQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANN 333
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q + +
Sbjct: 334 RSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRLAQ 391
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/374 (59%), Positives = 285/374 (76%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 164/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL ++ + + +F +G I S
Sbjct: 63 MNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
AF T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 162/295 (54%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/416 (52%), Positives = 296/416 (71%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+RVCRDL TR S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AIEK+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLQKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V DL + S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K + + +RD + KS N++VKNL +S + L
Sbjct: 62 PKDAEHALDTMNFDVIKGKPLRIMW----SQRDPSLRKSGMGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA+E +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S +V RD I+RGS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--LITRGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A AL MN ++ KPL + +QR R
Sbjct: 59 FQHPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLR 94
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/386 (55%), Positives = 284/386 (73%), Gaps = 6/386 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TR SLGY YVNF + +A R LE
Sbjct: 3 SLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + GKP+R+M+S RDPSLRKSG GNIF+KNL+K+ID++AL D FS FGNILSCKV
Sbjct: 63 MNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
+D NG SKGYGFV F+ +ESA+KAIEK+NG++L +V+VGHF ++ER+ E+ +F
Sbjct: 123 SDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGARAREF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E L + FG +G S VM D G+SK FGFV++ +DA RAV+
Sbjct: 182 TNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDE 241
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + + YVG+AQKK ER+ ELK FEQ ++ ++QG NLY+KNLDD+IDDE+L
Sbjct: 242 MNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERL 301
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ FSPFG+ITS KVM + G SRG GFV FS P+EA++A+ EMNGK+V SKPLYVALAQ
Sbjct: 302 RTEFSPFGTITSAKVMME-GGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQ 360
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVA 408
RKE+R+A L Q+ MR +A T A
Sbjct: 361 RKEERQAHLTNQY--MRRMANIQTFA 384
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRA 362
A+LY+ +L + + L + FSP G I S +V RD I+R G +V F +A R
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRD--MITRSSLGYAYVNFQQSSDAQRV 59
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
L MN ++ KP+ + +QR R
Sbjct: 60 LETMNLDVIKGKPVRIMWSQRDPSLR 85
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/416 (52%), Positives = 296/416 (71%), Gaps = 45/416 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ Q+ +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKAL 122
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 182
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TEE+ ++ F +YG +TS+ + RD +GKS+ FGFVNF AA+AV
Sbjct: 243 NFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAV 302
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F +E YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDD 362
Query: 321 KLKQLFSPFGSITSCKVMRD-----PSGI------------------------------- 344
KL+Q+FS FG ITS KVMRD P+G
Sbjct: 363 KLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKK 422
Query: 345 -------SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 423 VERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEA 478
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 162/291 (55%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V +++ + +KA+E+
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGEKALEE 124
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ NV++KNL + + L +F +G I S
Sbjct: 125 LNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 180
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D +G SK +GFV++E + AA+A++ +NG ++K+ YVG K +R+ E+
Sbjct: 181 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEM 240
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+Y+KN++ + +E+ ++LF+ +G +TS + RD G SRG
Sbjct: 241 KANF-------------TNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGF 287
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F+T A++A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 288 GFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAAR 338
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 60/236 (25%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ VT+ + +LF + G+V S + RD + +S G+G+VNF+ AA+A+E
Sbjct: 245 TNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARD-NEGKSRGFGFVNFTTHASAAKAVE 303
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRKS N++IKNL +D
Sbjct: 304 ELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDK 363
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L FS FG I S KV D
Sbjct: 364 LRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKV 423
Query: 149 ----GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 424 ERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEAS 479
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/382 (55%), Positives = 290/382 (75%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + A+
Sbjct: 42 TASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAI 101
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDPS+RK G+GNIFIKNL ID+K L++TFS FGNILSCK
Sbjct: 102 EKLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFGNILSCK 161
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+A D G+SKG+GFV F+NEE+A++AI+ +NGMLLN ++VYV + K++R +++++++
Sbjct: 162 IANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEARA 221
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKNL TEED + F YGTITS + +D +GKS+ FGFV+FEN +DA +AV
Sbjct: 222 NFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAV 281
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
EALN ++ + YVG+AQKK ER ELK Q++ + E K+QG NL+IKNLDDSIDDE
Sbjct: 282 EALNDTEYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDE 341
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+PFG+ITS +VMR +G S+G GFV FSTPEEA+RA+ E N ++V KPLYVA+
Sbjct: 342 KLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAI 401
Query: 381 AQRKEDRRARLQAQFA---QMR 399
AQRK+ RR++L Q QMR
Sbjct: 402 AQRKDVRRSQLAQQIQARNQMR 423
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/414 (53%), Positives = 306/414 (73%), Gaps = 8/414 (1%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A V+ QG + + + + SLYVG+L+ +VT++ L+++FN +G V S+RVCRD T
Sbjct: 8 ATVETQGSSTSA--PESAPLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVT 65
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
RRSLGY YVNF +A RALE LN++ + G+ R+M+S RDPSLRK GNIFIKNLD
Sbjct: 66 RRSLGYAYVNFHRMADAERALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDP 125
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+IDHKALHDTFSAFGNILSCK+A D G SKGYGFV ++ E+A+ AI+ +NGMLLND++
Sbjct: 126 SIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRK 185
Query: 182 VYVGHFLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
V+VGH + ++ER++++ +S+ FTN+YVKN+ T+E+L + FG+YGTITS V+ RD D
Sbjct: 186 VFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDD 245
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
G SK FGFVNFE DA AV+ L+ K F ++ YV +AQKK+ERE EL+ Q+E+ E
Sbjct: 246 GTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEK 305
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358
K+QG NLY+KNLDD +DD++L+ FS +G ITS K+MRD + ISRG GFV F++PE+
Sbjct: 306 MSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPED 365
Query: 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMRPVAMASTVAP 409
A+RA+ EMNG+++ SKP+YVA+AQRKE RR++L+ Q A Q++ M +V P
Sbjct: 366 ATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQLEIQMAQRNQLKQAMMPPSVFP 419
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/406 (53%), Positives = 299/406 (73%), Gaps = 11/406 (2%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ N+ +
Sbjct: 106 QPSSASLYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGE 165
Query: 80 RALEMLNFTPLNGKP---IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
RALE LN++ + GKP R+M+S RDP+LRK+G GNIFIKNLD+ ID+KALHDTF AFG
Sbjct: 166 RALEQLNYSLIKGKPWHVSRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFVAFG 225
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
N+LSCKVA D G SKGYGFV ++ E+A AI+ ++GMLLNDK+VYVG + ++ER ++
Sbjct: 226 NVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGRHIPRKERQSK 285
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
++ +++FTN+YVKNL E++ +K F YGTITSAV+ D DGKSK FGFVN+E +
Sbjct: 286 LDEIRAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHE 345
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A +AV+ALN K + K+ +VG+AQK++ER+ EL+ F+ E K QG NLYIKN+D
Sbjct: 346 MAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNID 405
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDEKL+ F P+G+ITS K+MRD G+S+G GFV FSTP+EA+RA+ EMN KM+ SK
Sbjct: 406 DDMDDEKLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSK 465
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM------PMY 414
PLYV+LAQR++ RR +L++Q +Q + M A + PMY
Sbjct: 466 PLYVSLAQRRDVRRQQLESQISQRNQIRMQQAAAAGLTGYINGPMY 511
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/390 (54%), Positives = 287/390 (73%), Gaps = 9/390 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NASGAG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNL+ +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFS FGNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF
Sbjct: 117 DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E+ + FTN+YVKNL E LQ F ++G + S VMRD G S+ FGF
Sbjct: 176 RREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE ++A +AV +NG + + YVG+AQK+ ER+ ELK +FE ++ ++ QG N
Sbjct: 236 VNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
G+++ +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 355 GRIIGTKPLYVALAQRKEERKAILTNQYMQ 384
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 170/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A +
Sbjct: 97 GVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQQ 153
Query: 81 ALEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + R+ L R + NI++KNL +D + L D FS
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQ 213
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +LS KV D +G S+G+GFV F+ E AQKA+ +NGM ++ + +YVG ++ ER
Sbjct: 214 FGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQ 273
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F YG ITSA VM +G G S
Sbjct: 274 NELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERKAILTNQYMQRL 386
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/437 (49%), Positives = 305/437 (69%), Gaps = 17/437 (3%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A ++ SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G+ILSCKV D G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q MR + A+ P MP A+
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFY 420
Query: 421 WLSAAACSWYEARWGSH 437
+ A +W SH
Sbjct: 421 SPNPVAPVRPAPQWASH 437
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/405 (56%), Positives = 291/405 (71%), Gaps = 13/405 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ +S L+D F+ G V+S+RVCRD+ +RRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ D G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDSAFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L + FSP+G+ITS KVM D G S+G GFV F + EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPP 416
QRKE+R+A L +Q+ + MR + P +P PP
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQIFPPNAAGGFFVPTMPP 407
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 165/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATD-EKANSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHDSAFGVNLYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F ++++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 285/374 (76%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRDKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK D K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG+++ SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 164/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + I+ L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ DK + + +RD + +S NV++KNL ++ + + +F +G I S
Sbjct: 63 MNFDLIRDKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
A+ T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQELKRKFEELK 277
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 165/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGTSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + D K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/429 (53%), Positives = 298/429 (69%), Gaps = 14/429 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+ ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A +IEK+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 LDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L+ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPGAWIWLSAAACSWYE 431
QRKE+R+A L +Q+ + MR + P +P PG + A
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQIFQPNTTGGFYVPTMAPGQRFFSPQIATQMRN 422
Query: 432 A-RWGSHAK 439
A RW S +
Sbjct: 423 APRWASQVR 431
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV + D +L D F G++ S +V +S G+G+V F + A A++
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFEPYGKITSYKVMSK-EDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 84 MLNFTPL-NGKPIRVMYSH----RDPSLRK-----------SGAG-NIFIKNLDKAIDHK 126
LN + GK + V + R L++ S G N+++KNLD +ID +
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDE 301
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L FS +G I S KV TD G+SKG+GFV F + A A+ +LNG ++ K +YV
Sbjct: 302 RLRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVAL 361
Query: 187 FLRKQERDTEINKSKFTNVYVKNLS 211
RK+ER K+ + Y+++++
Sbjct: 362 AQRKEER-----KAHLASQYMRHMT 381
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/425 (51%), Positives = 293/425 (68%), Gaps = 48/425 (11%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N NQ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 43 NPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 102
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 103 DGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG 162
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 163 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 222
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVYVKN+ T+E+ ++ FG++G ITSA + RD GKS+ FGFVN+ + +
Sbjct: 223 FEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHE 282
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+A AV+ LN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 283 NAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLT 342
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGI------------------------------ 344
D +DDEKL++LFS FG+ITS KVMRD G
Sbjct: 343 DDVDDEKLRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTED 402
Query: 345 ----------------SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ R+
Sbjct: 403 EDKTDAKKSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRK 462
Query: 389 ARLQA 393
++L+A
Sbjct: 463 SQLEA 467
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 159/300 (53%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 42 PNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 101
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 102 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 157
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 158 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 217
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN+D + DE+ ++LF FG ITS + R
Sbjct: 218 DRQSKFEEMKANF-------------TNVYVKNIDPEVTDEEFRELFGKFGDITSATISR 264
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D SG SRG GFV + E A A+ ++N K + LYV AQ+K +R L+ Q+ R
Sbjct: 265 DDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAAR 324
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ VTD + +LF + G + S + RD S + S G+G+VN+ + + A A++
Sbjct: 231 TNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGK-SRGFGFVNYVDHENAQTAVD 289
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLR------------KSGAGNIFIKNLDKAIDHKA 127
LN +G+ + R H R+ LR K N+++KNL +D +
Sbjct: 290 DLNDKDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 349
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + FSAFG I S KV D
Sbjct: 350 LRELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDAK 409
Query: 147 -----LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+ G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 410 KSDKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEAS 468
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/417 (51%), Positives = 300/417 (71%), Gaps = 10/417 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NATGAG-----YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ F P+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSA 424
G++V +KPLYVALAQRKE+R+A L Q+ Q R M + P + + A +LSA
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATMRAMPGPLLGSFQQPANYFLSA 410
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 285/374 (76%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + I+ L + FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL ++ + + +F +G I S
Sbjct: 63 MNFDLIRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
A+ T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 165/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/380 (57%), Positives = 287/380 (75%), Gaps = 5/380 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G ++S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFG+ILS
Sbjct: 68 ALDSMNFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CKV D NG SKGYGFV F EE+A K+IEK+NGMLLN K+VYVG F+ ++ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQ 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
+ KFTNV+VKN + +E L++ F YG I S VM+D G++K FGFV FE+ DA
Sbjct: 187 QKKFTNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAE 246
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
A + LN K + + YVG+AQKK ER+ EL+++FE E A+++QG NLY+KNLDDS+
Sbjct: 247 NACDDLNMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSL 306
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 307 DDERLRKEFMPFGTITSAKVMSE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 365
Query: 378 VALAQRKEDRRARLQAQFAQ 397
VALAQRKEDR+A L +QF Q
Sbjct: 366 VALAQRKEDRKAHLASQFMQ 385
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 166/294 (56%), Gaps = 22/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S +V D + S GYG+V+F+ + A ++
Sbjct: 97 GVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG--SKGYGFVHFATEEAANKS 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + R G N+F+KN +D + L + F +
Sbjct: 155 IEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQQKKFTNVFVKNFGDELDDEGLREMFERY 214
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I+S KV D +G++KG+GFV F++ A+ A + LN +N + +YVG +K ER
Sbjct: 215 GKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQ 274
Query: 195 TEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM +G G+S
Sbjct: 275 AELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEG-GRS 333
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L QF Q M
Sbjct: 334 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEDRKAHLASQFMQRM 387
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 163/299 (54%), Gaps = 17/299 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L + FS+ G ILS +V D+ +S GY +V F
Sbjct: 2 NPSGPSYPMASLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + + + +RD + KS NV++KNL +S + +
Sbjct: 62 PADAERALDSMNFDVIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+F + A +++E +NG + K+ YVGK +
Sbjct: 118 TFSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ER + Q KF N+++KN D +DDE L+++F +G I S KVM+D
Sbjct: 177 KERYDAMGGQ--------QKKF--TNVFVKNFGDELDDEGLREMFERYGKIVSHKVMQDD 226
Query: 342 -SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG ++G GFV F P +A A ++N K + + LYV AQ+K +R+A L+ +F M+
Sbjct: 227 HSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQAELRNRFELMK 285
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
AN++ +LYV +L+ ++ D +L F G + S +V + RS G+G+V FS+ +E
Sbjct: 289 ANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMSEGG--RSKGFGFVCFSSPEE 346
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A +A+ +N ++ KP+ V + R
Sbjct: 347 ATKAVTEMNGRIVSTKPLYVALAQR 371
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/417 (51%), Positives = 300/417 (71%), Gaps = 10/417 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NATGAG-----YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ F P+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSA 424
G++V +KPLYVALAQRKE+R+A L Q+ Q R M + P + + A +LSA
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATMRAMPGPLLGSFQQPANYFLSA 410
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/382 (55%), Positives = 293/382 (76%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + +A+
Sbjct: 39 SASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAI 98
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+ R+M+S RDP+LRK G+ NIFIKNL ID+KAL+DTFS FGNILS K
Sbjct: 99 EKLNYTPIKGRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFSVFGNILSSK 158
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+ATD G+SKG+GFV F+++ +A++AI+ LNGMLLN ++++VG L ++ERD+++ +SK
Sbjct: 159 IATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKA 218
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN++ TT+E+ + F +YG + SA + + DGK K FGFV+FEN +DAA+AV
Sbjct: 219 NFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAV 278
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNG +F D+E +V +AQKK ER ELK Q+E + E K+QG NL+IKNLDDSIDDE
Sbjct: 279 EELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDE 338
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+P+G+ITS +VMR +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+
Sbjct: 339 KLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 398
Query: 381 AQRKEDRRARLQAQFA---QMR 399
AQRK+ RR++L Q QMR
Sbjct: 399 AQRKDVRRSQLAQQIQARNQMR 420
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 19/300 (6%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQ 166
++ + ++++ +LD ++ L+D FS G++ S +V D + S GY +V F++ E+ +
Sbjct: 36 ENSSASLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGK 95
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRK--QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
KAIEKLN + G R +RD + K N+++KNL + L +F
Sbjct: 96 KAIEKLNYTPIK------GRLCRIMWSQRDPALRKKGSANIFIKNLHSDIDNKALYDTFS 149
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S+ + D GKSK FGFV+FE+ A A++ALNG + +E +VG + ER
Sbjct: 150 VFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKER 209
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
+ +L +E+ F N+Y+KN++ DE+ +LFS +G + S + + G
Sbjct: 210 DSQL--------EESKANF--TNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGK 259
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA 404
+G GFV F E+A++A+ E+NG + L+V+ AQ+K +R L+ Q+ R MA
Sbjct: 260 LKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMA 319
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/448 (50%), Positives = 307/448 (68%), Gaps = 52/448 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITRRSLGYAYVNYNTTVDGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 180 VAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ TEE+ ++ F ++G +TSA + RD + GKS+ FGFVNF N + AA A
Sbjct: 240 NFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD IDD
Sbjct: 300 VDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEIDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LF+PFG+ITS KVMRD
Sbjct: 360 EKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAPKAK 419
Query: 341 -PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
P G S+G GFV F+ P+EA++A+ +MN +MV +KPLYVALAQRK+ R+++L+A
Sbjct: 420 RPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASIQARN 479
Query: 400 PVAMASTVA----PRM----PM-YPPGA 418
+ M A P+ PM +PPGA
Sbjct: 480 QIRMQQAAAQAGMPQQYMQAPMFFPPGA 507
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/428 (52%), Positives = 290/428 (67%), Gaps = 19/428 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL T++ LY F+++G V+S R+CRDL+TR SLGYGYVNF ++A RALE
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ G+PIR+M+S RDPSLRKSG GNIFIKNLDK ID K L+DTFS G ILSCK+
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKI 120
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D +G SKGYGFV F+ EE A++AIEK+NGM++ND+ VYVG F+ +R + K +F
Sbjct: 121 AMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLRFN 180
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN TT+E L+ F E+G I S V ++ +GKSK FGFV F + D A +AV +
Sbjct: 181 NIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVM 240
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF-QGANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E K+ G NLY+KNLDD+IDDE+L
Sbjct: 241 HGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERL 300
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ FS +G ITS KVM D +G S+G GFV F+ PE+A+RA+ EMN +V SKPLYVALAQ
Sbjct: 301 KEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQ 360
Query: 383 RKEDRRARLQAQ-----------FAQMRPVAMASTVAPRMPMYPPGAW-----IWLSAAA 426
RKEDRRA+L A+ QM P A A AP +PP A+ + +A
Sbjct: 361 RKEDRRAKLIAEHQQRLAQYRSPVTQMLPAAAAHAAAPS--YFPPTAFPQAQRYYHPTSA 418
Query: 427 CSWYEARW 434
+ RW
Sbjct: 419 VISSQPRW 426
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + QLYD F+ +G+++S ++ D S GYG+V+F + A RA
Sbjct: 87 GKGNIFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMD-EHGNSKGYGFVHFEKEECAERA 145
Query: 82 LEMLNFTPLNGKPIRVMYSHR--DPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSA 134
+E +N +N RV+Y + S RKS +G NI++KN + L D FS
Sbjct: 146 IEKINGMMIND---RVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDEKLRDMFSE 202
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I SC V + G+SKG+GFV F + + A++A+ ++G +N + +Y RK+ER
Sbjct: 203 FGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQ 262
Query: 195 TEINK----------SKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ + SK+ N+YVKNL ++ +E L+++F YG ITSA VM D +G+
Sbjct: 263 EELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGR 322
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F + AARAV +N K YV AQ+K +R +L + +Q + +
Sbjct: 323 SKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRKEDRRAKLIAEHQQRLAQ 379
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/432 (51%), Positives = 297/432 (68%), Gaps = 20/432 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ L G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KN T E L++ F E+G I SA VM+D +GKSK FGFV F + D A AV+ +
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL----QAQFAQMR-PVAMASTVAPRMP-------MYPPG----AWIWLSAAA 426
RKEDRRA+L Q + AQ R PVA ++ P +P +PP + + A
Sbjct: 373 RKEDRRAKLIEEHQQRMAQYRNPVA---SMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGA 429
Query: 427 CSWYEARWGSHA 438
+ RW A
Sbjct: 430 VLSSQPRWNRAA 441
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 165/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N++IKN D++ L + F+
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV F + + A+ A++ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Query: 195 TEIN----------KSKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ +S + N+YVKNL ++ ++ L+++F +G+ITSA VM+D + +
Sbjct: 275 EELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q M +
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/428 (51%), Positives = 296/428 (69%), Gaps = 20/428 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ L G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KN T E L++ F E+G I SA VM+D +GKSK FGFV F + D A AV+ +
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL----QAQFAQMR-PVAMASTVAPRMP-------MYPPG----AWIWLSAAA 426
RKEDRRA+L Q + AQ R PVA ++ P +P +PP + + A
Sbjct: 373 RKEDRRAKLIEEHQQRMAQYRNPVA---SMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGA 429
Query: 427 CSWYEARW 434
+ RW
Sbjct: 430 VLSSQPRW 437
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 165/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N++IKN D++ L + F+
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV F + + A+ A++ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Query: 195 TEIN----------KSKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ +S + N+YVKNL ++ ++ L+++F +G+ITSA VM+D + +
Sbjct: 275 EELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q M +
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/416 (51%), Positives = 295/416 (70%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/374 (55%), Positives = 290/374 (77%), Gaps = 4/374 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LR+SG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-- 201
+ +G S+G+GFV F+ E+AQKAI +NGMLLND++V+VGHF +Q+R+ E+
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL E+ LQ F ++G S VMRD +G+S+ FGF+NFE ++A +AV+
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDDSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G ITS KVM + S S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALA
Sbjct: 310 LKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L Q+
Sbjct: 369 QRKEERKAILTNQY 382
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 170/308 (55%), Gaps = 22/308 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LN + + V + R+ L R G NI++KNL +D + L D FS F
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S KV D NGQS+G+GF+ F+ E AQKA++ +NG ++ + +YVG ++ ER
Sbjct: 215 GKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQN 274
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S ++ L++ F YG ITSA VM + SK
Sbjct: 275 ELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS-HSK 333
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM-KEAADK 302
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ + + +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSS 393
Query: 303 FQGANLYI 310
FQ Y+
Sbjct: 394 FQQPTSYL 401
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 161/288 (55%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + +S N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D++ +VG + + +RE EL
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A N+Y+KNL +D++ L+ LFS FG S KVMRD +G SRG GF+
Sbjct: 184 -------GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFI 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
F EEA +A+ MNGK V + LYV AQ++ +R+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMK 284
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 118/213 (55%), Gaps = 23/213 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A G T++YV +L ++ + L DLF+Q G+ SV+V RD S +S G+G++NF +E
Sbjct: 185 ARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEE 243
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKS------------GAGNIFIKNLDK 121
A +A++ +N ++G+ + V + R L++ N+++KNLD
Sbjct: 244 AQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDD 303
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+I+ L + FS +G I S KV T+ + SKG+GFV F + E A KA+ ++NG ++ K
Sbjct: 304 SINDDRLKEVFSTYGVITSAKVMTE-SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
+YV RK+ER K+ TN Y + LS S
Sbjct: 363 LYVALAQRKEER-----KAILTNQYRRRLSRSV 390
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 18/202 (8%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 252
DT + +++YV +L TE L + F GTI S V RD +S + ++NF+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
DA RA++ +N + + + S R+ L+ + N++IKN
Sbjct: 62 PADAERALDTMNFEMIKGQPIRI----MWSHRDPGLR------------RSGMGNIFIKN 105
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L++SID++ L FS FGSI S KV+ + G SRG GFV F T E A +A+ MNG ++
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLN 164
Query: 373 SKPLYVALAQRKEDRRARLQAQ 394
+ ++V + ++ R A L A+
Sbjct: 165 DRKVFVGHFKSRQKREAELGAR 186
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/426 (52%), Positives = 298/426 (69%), Gaps = 22/426 (5%)
Query: 44 FNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103
F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + G+P+R+M+S RD
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEE 163
PSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ E
Sbjct: 78 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHE 136
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQK 221
+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++
Sbjct: 137 AAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKE 196
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +YG S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + ++ YVG+AQKK
Sbjct: 197 LFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKK 256
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ER+ ELK +FEQ ++ ++QG NLY+KNLDD +DDE+L++ FSPFG+ITS KVM +
Sbjct: 257 GERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME- 315
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV 401
G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 316 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMAT 375
Query: 402 AMA---STVAPRMPMYPPG---AWIWLSAAACSWYEA----------RWGSHAKFLCADS 445
A + P P P G A I + ++Y A RW + CA S
Sbjct: 376 VRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRAAYYSANQLAQLRPSPRWNDSRE--CAHS 433
Query: 446 SARAAG 451
AAG
Sbjct: 434 YKYAAG 439
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 119/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF++ G +S+RV D S +S G+G+V+F
Sbjct: 171 GARAREF--TNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSG-KSKGFGFVSFER 227
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNG+ + V + + D R G N+++K
Sbjct: 228 HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGV-NLYVK 286
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD +D + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 287 NLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 345
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 346 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 374
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/374 (58%), Positives = 286/374 (76%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDKAID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN ++ +E L+++F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDDSIDDE+
Sbjct: 243 LNGKDMGEGKTLYVARAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + I+ L + FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL ++ + + +F +G I S
Sbjct: 63 MNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+YIKN D DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
A+ T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELKRKFEELK 277
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATD-EKGHSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N++IKN D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYIKNFTDEFDDEKLKENFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV ++ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL +S +E L+K F YGTITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/428 (51%), Positives = 296/428 (69%), Gaps = 20/428 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ L G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+Y+KN T E L++ F E+G I SA VM+D +GKSK FGFV F + D A AV+ +
Sbjct: 193 NLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ-GANLYIKNLDDSIDDEKL 322
+GK+ + + Y +AQ+K ER+ ELK + E+ E + NLY+KNLDD+IDD++L
Sbjct: 253 HGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS GSITS KVM+D + S+G GFV F+ PE+A+RA+ +MNG ++ SKPLYVALAQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 383 RKEDRRARL----QAQFAQMR-PVAMASTVAPRMP-------MYPPG----AWIWLSAAA 426
RKEDRRA+L Q + AQ R PVA ++ P +P +PP + + A
Sbjct: 373 RKEDRRAKLIEEHQQRMAQYRNPVA---SMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGA 429
Query: 427 CSWYEARW 434
+ RW
Sbjct: 430 VLSSQPRW 437
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 165/297 (55%), Gaps = 24/297 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N++IKN D++ L + F+
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV F + + A+ A++ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQ 274
Query: 195 TEIN----------KSKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ +S + N+YVKNL ++ ++ L+++F +G+ITSA VM+D + +
Sbjct: 275 EELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR 334
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
SK FGFV F N + AARAV +NG K YV AQ+K +R +L + +Q M +
Sbjct: 335 SKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/435 (51%), Positives = 305/435 (70%), Gaps = 18/435 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+Q G V+S+RVCRDL TRRSLGY YVNF +A R
Sbjct: 8 YPIASLYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A++ +N+ P+ G+P R+M+S RDP+LR+SG GNIFIKNLDK ID+K L+D FSAFGNILS
Sbjct: 68 AIDTMNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKNIDNKGLYDAFSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
CK+A D S+GYGFV ++ +E+A +AI K+NGM+LNDK+V+VG F+ K+ER ++
Sbjct: 128 CKIAVDSKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQ 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
KF NV+VKN +S EE L++ FG++G ITS VVM + GKSK FGFV FE + A
Sbjct: 188 AKKFKNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAE-SGKSKGFGFVAFEAPEAAEA 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV LNG + + ++ V +AQKK+ER +ELK +FE E +++QG NLYIKNL+D +D
Sbjct: 247 AVNELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKNLEDGLD 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L+ FS +G+ITS KVM+D GIS+G GFV FS+P+EA++A+ EMNG+++V+KPLYV
Sbjct: 307 DERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYV 366
Query: 379 ALAQRKEDRRARLQAQFAQ-MRPVAM-ASTVAPR-------------MPMYPPGAWIWLS 423
ALAQRKE+RRA+L QF Q + P+ AS P+ +P P +++
Sbjct: 367 ALAQRKEERRAQLSTQFLQRVNPLRYNASGTMPQAGYSFQAGQPGFYIPTVPTNQRPFIT 426
Query: 424 AAACSWYEARWGSHA 438
+ RW S A
Sbjct: 427 QSVNQITRPRWQSQA 441
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 20/200 (10%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G A +F +++V + ++ + +L ++F + G++ S V + + +S G+G+V F
Sbjct: 185 GDQAKKF--KNVFVKNFGDSLDEEKLKEMFGKHGEITSCVVMAE--SGKSKGFGFVAFEA 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPS----------------LRKSGAGNIFIKN 118
+ A A+ LN + G+ + V + + + + N++IKN
Sbjct: 241 PEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVNLYIKN 300
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
L+ +D + L FS +G I S KV D G SKG+GFV F + + A KA+ ++NG +L
Sbjct: 301 LEDGLDDERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILV 360
Query: 179 DKQVYVGHFLRKQERDTEIN 198
K +YV RK+ER +++
Sbjct: 361 TKPLYVALAQRKEERRAQLS 380
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/441 (54%), Positives = 316/441 (71%), Gaps = 15/441 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ L++ F+ +G VVSVRVCRD TRRSLGY YVNF N +A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSAVGVVVSVRVCRDNITRRSLGYAYVNFQNMADAECALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF LNG P+R+M+S RDPSLRKSG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFEILNGCPMRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D GQSKGYGFV FD E+SA ++IEK+NGMLLN K+V+VG F+ +++R+ E+ K+K F
Sbjct: 123 QDETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN+ E+ +++L + F +YG+ITS VM DG S+ FGFV FE+ +A +AV
Sbjct: 183 TNVYIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSE 242
Query: 263 LNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GK+ + K +YVG+AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDDE
Sbjct: 243 LHGKESPEGKTYYVGRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDDEH 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+ITS KVM D G S+G GFV FS+PEEA++A+ EMN ++V +KPLYVALA
Sbjct: 303 LRREFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALA 361
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPGAWIWLSAAACSWY- 430
QRKE+R+A L AQ+ Q MR ++ P +P P G + A
Sbjct: 362 QRKEERKAHLNAQYLQSNTNMRMQSIGPIYQPGASSGYFVPTIPQGQRFYGPAQMTQIRP 421
Query: 431 EARWGSHAKFLCADSSARAAG 451
+ RW S + A AAG
Sbjct: 422 QPRWASQPQVRIATPQNAAAG 442
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/396 (55%), Positives = 293/396 (73%), Gaps = 9/396 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA---QE 77
+SLYVGDLE +VT++QL++LF+ +G V S+RVCRD TRRSLGY YVN+++A Q
Sbjct: 20 LANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQA 79
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RA+E LN+ +NGKP+R+M+SHRDPS RKSG GNIFIKNLDK ID KALHDTFSAFG
Sbjct: 80 ADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFGK 139
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVATD NG SKGYGFV F+++ +A +AI+ +N + K VYVG F ++ +R ++
Sbjct: 140 ILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRADRPQDV 199
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+TNV+VKNL +++L K E+G ITSAVVM+D G SK FGF+NF++++ AA
Sbjct: 200 ----YTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAA 255
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+ VE LN ++ K Y G+AQKK+ERE L+ + E++ +E K+QG NLY+KNL D +
Sbjct: 256 KCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEV 315
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DD+ L++LF+ G+ITSCKVM+D SG S+G GFV F++ +EA+RA+ EMNGKMV KPLY
Sbjct: 316 DDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLY 375
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM 413
VALAQRK+ RRA+L+A Q R + M + P PM
Sbjct: 376 VALAQRKDVRRAQLEANM-QAR-MGMGAMSRPPNPM 409
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAF 353
+ A+ ++LY+ +L+ + + +L +LFS G + S +V RD ++R G +V +
Sbjct: 14 QPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRD--AVTRRSLGYAYVNY 71
Query: 354 ST---PEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
++ P+ A RA+ +N +V KP+ + + R R
Sbjct: 72 NSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSAR 109
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/416 (51%), Positives = 295/416 (70%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/416 (51%), Positives = 295/416 (70%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVTQTQNHAAYY 417
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/416 (51%), Positives = 295/416 (70%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/460 (48%), Positives = 308/460 (66%), Gaps = 56/460 (12%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 61 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTTDGEKAL 120
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 121 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 180
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 181 VAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 240
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T+E+ ++ F ++G +TSA + RD D GKS+ FGFVNF N + AA A
Sbjct: 241 NFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATA 300
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD +DD
Sbjct: 301 VDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDD 360
Query: 320 EKLKQLFSPFGSITSCKVMRDPS------------------------------------- 342
EKL++LF+PFG+ITS KVMRD +
Sbjct: 361 EKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEAP 420
Query: 343 -------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
G S+G GFV FS P+EA++A+ +MN MV KPLYVALAQRK+ R+ +L+A
Sbjct: 421 KSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDVRKGQLEASI 480
Query: 396 A-----QMRPVAMASTVAP---RMPM-YPPGAWIWLSAAA 426
+M+ A + + P + PM YPPG AA
Sbjct: 481 QARNQIRMQQAAAQAGMPPQYMQAPMFYPPGQQPGFMPAA 520
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/410 (53%), Positives = 294/410 (71%), Gaps = 15/410 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ + SLYVGDL ++++ L+DLF+++G ++S+R+CRD TR+SLGY YVNF N Q+A R
Sbjct: 3 YSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAER 62
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+ + G PIR+M+S RDPS+RKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 63 ALDTLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILS 122
Query: 141 CKVATDL--------NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
CKV N +S GYGFV F+ +E+A+KAI K+NGMLLN KQV+VG F++K E
Sbjct: 123 CKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKKTE 182
Query: 193 RDTEI-NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
R + N+ FTN+YVKNL S E++L + F ++G I +AVVMR +G SK FGF+NF
Sbjct: 183 RLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFA 242
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A A++ +N K F +K+ +VG+AQKK+ER +LK F++ +E +K++G NLY+K
Sbjct: 243 DHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVK 302
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDS+DDE+L+Q FS FG ITS KVM D + SRG GFV F TPE A++AL EM+G M+
Sbjct: 303 NLDDSVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKALTEMSGHMI 361
Query: 372 VSKPLYVALAQRKEDRRARLQAQF-----AQMRPVAMASTVAPRMPMYPP 416
SKPLYV AQ KE RR++L+AQ+ QM P M P +PP
Sbjct: 362 GSKPLYVNFAQPKELRRSQLEAQYNARKQPQMIPQMMPQFFIPAQGAFPP 411
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 106/196 (54%), Gaps = 18/196 (9%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
+N+ T++YV +L+A+V + +L ++F++ G++ + V R S +G++NF++
Sbjct: 188 SNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRG-ENGASKEFGFINFADHAS 246
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLR----------------KSGAGNIFIKNLDK 121
A A++ +N K + V + + R K N+++KNLD
Sbjct: 247 ALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDD 306
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
++D + L FS FG+I S KV +D N QS+G+GFV F E+A KA+ +++G ++ K
Sbjct: 307 SVDDERLRQEFSKFGDITSAKVMSD-NKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKP 365
Query: 182 VYVGHFLRKQERDTEI 197
+YV K+ R +++
Sbjct: 366 LYVNFAQPKELRRSQL 381
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/416 (51%), Positives = 295/416 (70%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S +M D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S ++M D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVELMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/463 (47%), Positives = 309/463 (66%), Gaps = 26/463 (5%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N +G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NASGPG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+
Sbjct: 57 INFQQPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D NG S+GYGFV F+ E+A +AIE +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN + ++ L++ F ++G S VM D G+SK FGF
Sbjct: 176 RKEREAEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGF 235
Query: 248 VNFENSDDAAR----------------AVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VNFE ++A + AV +NGK+ + + YVG+AQK+ ER+ ELK +
Sbjct: 236 VNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRK 295
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
FEQ +E ++QG NLY+KNLDD IDD++L++ FSP+G+ITS KVM + G S+G GFV
Sbjct: 296 FEQIKQERVSRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFV 354
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM 411
FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q R + + P +
Sbjct: 355 CFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATLRALPGPLL 413
Query: 412 PMYPPGAWIWLSAAACSWYEARWGSHAKFLCADSSARAAGSAS 454
+ P +L A + S + + + R + S
Sbjct: 414 GSFQPPPGYFLPPIPQPQTRATFYSPSPVVPVRPATRWSAQPS 456
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I S
Sbjct: 63 MNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
AF T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 163/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 297/398 (74%), Gaps = 5/398 (1%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/432 (50%), Positives = 291/432 (67%), Gaps = 55/432 (12%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 103
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 104 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 163
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 164 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 223
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ K+ FTN+Y+KN+ TEE+ +K F ++G ITSA + RD +GKS+ FGFVN+ +
Sbjct: 224 FDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHE 283
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ ++ K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 284 SAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 343
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---------------------------- 346
D +DDEKL++LF P+G+ITS KVMRD + R
Sbjct: 344 DDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEE 403
Query: 347 -------------------------GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
G GFV FS+P+EAS+A+ EMN +MV KPLYVALA
Sbjct: 404 KPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 463
Query: 382 QRKEDRRARLQA 393
QRK+ RR++L+A
Sbjct: 464 QRKDVRRSQLEA 475
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N ++A+
Sbjct: 50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 109
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN L+ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 110 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 165
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K +R+
Sbjct: 166 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFD 225
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKN+D + +E+ +++F FG ITS + RDP G SR
Sbjct: 226 EMKANF-------------TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSR 272
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV +ST E A A+ EM+ K V ++ LYV AQ+K +R L+ Q+ R
Sbjct: 273 GFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAAR 325
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 70/246 (28%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ +VT+ + +F Q G++ S + RD + S G+G+VN+S + A A++
Sbjct: 232 TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGK-SRGFGFVNYSTHESAQAAVD 290
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
++ + + + R H R+ LRK N+++KNL +D +
Sbjct: 291 EMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 350
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + F +G I S KV D
Sbjct: 351 LRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDE 410
Query: 147 ------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
L G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R
Sbjct: 411 EKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 470
Query: 195 TEINKS 200
+++ S
Sbjct: 471 SQLEAS 476
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 297/398 (74%), Gaps = 5/398 (1%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 297/398 (74%), Gaps = 5/398 (1%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 296/398 (74%), Gaps = 5/398 (1%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A++ LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIDQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+EN +DA +AVEALN + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/412 (53%), Positives = 293/412 (71%), Gaps = 30/412 (7%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G NA + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++
Sbjct: 43 GSTNAPH--SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 100
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N + RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 101 NTADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFA 160
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D NG SKGYGFV ++ E+A AI+ +NGMLLN+K+VYVGH + K+ER
Sbjct: 161 AFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKER 220
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNF 250
++ + K+ FTNVYVKN+ ++++ + F +G ITSA + RDGD G S+ FGFVNF
Sbjct: 221 QSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNF 280
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + AA AV+AL+ + + +VG+AQKK ERE EL+ Q+E E A K+QG NLY+
Sbjct: 281 SSHEAAAAAVDALHETELKGQALFVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYV 340
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-------------------------SGIS 345
KNLDD IDDE+L+Q FSP+G+ITS KVMRD G S
Sbjct: 341 KNLDDEIDDERLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKS 400
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+G GFV FS P+EAS+A+ EMN +MV KPLYVALAQRK+ R+++L+A Q
Sbjct: 401 KGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQQ 452
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 162/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + ++ L + FS G +LS +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N LL +K + + +RD + +S NV++KNL + + + +F +G I S
Sbjct: 63 MNFDLLRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
AF T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 163/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 297/398 (74%), Gaps = 5/398 (1%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/382 (55%), Positives = 289/382 (75%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAI 125
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILS K
Sbjct: 126 EELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVK 185
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ EE+AQ AIE +NGMLLND++VYVG + K++R++++ K+
Sbjct: 186 VATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKA 245
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+YVKN+ + TE++ ++ F +G ITS + +D +GKSK FGFVNFE + AA+AV
Sbjct: 246 NYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAV 305
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLD+ ID E
Sbjct: 306 EELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSE 365
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV FSTPEEA++A+ EMN +MV KPLYVAL
Sbjct: 366 KLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVAL 425
Query: 381 AQRKEDRRARLQAQFA---QMR 399
AQRK+ RR++L+ Q QMR
Sbjct: 426 AQRKDVRRSQLEQQIQARNQMR 447
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/430 (50%), Positives = 294/430 (68%), Gaps = 53/430 (12%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+ +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 41 STSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 100
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 101 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 160
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 161 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 220
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KNL + +EE+ ++ F ++G ITSA + RD +GKS+ FGFVN+ D
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 340
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D IDDEKL+++F+P+G+ITS KVMRD +
Sbjct: 341 DDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAA 400
Query: 343 -------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
G S+G GFV FS+P+EAS+A+ EMN +M+ KPLYVALAQR
Sbjct: 401 KESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQR 460
Query: 384 KEDRRARLQA 393
K+ RR++L+A
Sbjct: 461 KDVRRSQLEA 470
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N ++A+E
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ K + +RD + K+ NV++KNL + + L +F +G I S
Sbjct: 109 LNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K +R+ E+
Sbjct: 165 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEM 224
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+YIKNLD I +E+ +Q+F FG ITS + RD G SRG
Sbjct: 225 KANF-------------TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGF 271
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV +ST + A A+ EMN K V + LYV AQ+K +R L+ Q+ R
Sbjct: 272 GFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 68/244 (27%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +L+ +++ + +F + G++ S + RD + S G+G+VN+S A A++
Sbjct: 229 TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGK-SRGFGFVNYSTHDSAQAAVD 287
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + G+ + R H R+ LRK N+++KNL ID +
Sbjct: 288 EMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 347
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L + F+ +G I S KV D N
Sbjct: 348 LREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQ 407
Query: 149 ------------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R ++
Sbjct: 408 DKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
Query: 197 INKS 200
+ S
Sbjct: 468 LEAS 471
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/429 (52%), Positives = 297/429 (69%), Gaps = 14/429 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A +I+++NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ D G NLY+KNLDD+IDDE+
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPGAWIWLSAAACSWYE 431
QRKE+R+A L +Q+ + MR + P +P PP +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQMFQPNTTGGFFVPTIPPSQRFFGPQMTTQMRN 422
Query: 432 A-RWGSHAK 439
A RW +
Sbjct: 423 APRWAPQVR 431
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/426 (51%), Positives = 299/426 (70%), Gaps = 12/426 (2%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+G ++ N TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD TR+SLGY YVN
Sbjct: 67 SGTPSDGNAPKNTSLYVGELDPSVTEAMLFEIFSTVGPVASIRVCRDAVTRQSLGYAYVN 126
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ NA + +ALE LN++ + G+ R+M+S RDPSLRK+G GNIFIKNLD AID+KALHDT
Sbjct: 127 YHNADDGEKALEELNYSLIKGRACRIMWSQRDPSLRKTGTGNIFIKNLDPAIDNKALHDT 186
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFG ILSCKVA D G SKGYGFV F + +SA AIE +NGMLLNDK+VYVGH + ++
Sbjct: 187 FSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRR 246
Query: 192 ERDT--EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+R + E K+ FTNVY+KN+ T+E+ F ++G ITS +++D GK + FGFVN
Sbjct: 247 DRQSKFEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVN 306
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
FE+ + A +AV+ +N +F K+ YVG+AQK+ ERE EL+ ++EQ E K+QG NL+
Sbjct: 307 FESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQMKLEKMSKYQGVNLF 366
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNL D +DD LK FS FG+ITS KVM D +G S+G GFV +S+PEEA++A+ EMN +
Sbjct: 367 IKNLSDEVDDNLLKTEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQR 426
Query: 370 MVVSKPLYVALAQRKEDRRARLQA------QFAQMRPVAMASTVA----PRMPMYPPGAW 419
M+ KPLYVALAQRK+ RR++L+A QF + VA A A P Y PG +
Sbjct: 427 MLAGKPLYVALAQRKDVRRSQLEAQIQARNQFRMQQQVAAAGMSAQFGIPGAMYYGPGGY 486
Query: 420 IWLSAA 425
+ A
Sbjct: 487 PLPAGA 492
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/384 (54%), Positives = 287/384 (74%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTS--LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
AN + TTS LYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF+
Sbjct: 40 ANNSNVDTTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFN 99
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ + A+E LN++P+ GKP R+M+S RDP+LRK GAGNIFIKNL ID+KALHDTFS
Sbjct: 100 DHESGRTAIEKLNYSPIKGKPCRIMWSQRDPALRKKGAGNIFIKNLHPDIDNKALHDTFS 159
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCK+ATD G+SKG+GFV F+ + +A +A++ +NGM+LN ++VYV + K++R
Sbjct: 160 VFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDR 219
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++++ K+ FTNVYVKN+ T E++ F +YG ITS + +D +GK + FGF+NFE
Sbjct: 220 ESKLEEVKANFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFE 279
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N DDAA+AVE LN +F ++ YVG+AQKK ER ELK Q+E + E K+QG NL++K
Sbjct: 280 NHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVK 339
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDDSIDDEKL+ F+PFGSITS KVMR+ G S+ GFV FSTPEEA++A+ E N ++V
Sbjct: 340 NLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIV 399
Query: 372 VSKPLYVALAQRKEDRRARLQAQF 395
KPLYVA+AQRK+ RR++L Q
Sbjct: 400 AGKPLYVAIAQRKDVRRSQLAQQI 423
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/429 (52%), Positives = 297/429 (69%), Gaps = 14/429 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLIRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
D G SKGYGFV F+ EE+A +I+++NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV +E ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ K+ D G NLY+KNLDD+IDDE+
Sbjct: 243 LNGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS +G+ITS KVM D G S+G GFV F +P EA+ A+ E+NG+++ SKPLYVALA
Sbjct: 303 LRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQFAQ----MRPVAMASTVAPR------MPMYPPGAWIWLSAAACSWYE 431
QRKE+R+A L +Q+ + MR + P +P PP +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQMFQPNTTGGFFVPTIPPSQRFFGPQMTTQMRN 422
Query: 432 A-RWGSHAK 439
A RW +
Sbjct: 423 APRWAPQVR 431
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/385 (55%), Positives = 285/385 (74%), Gaps = 5/385 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL T++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVNF ++
Sbjct: 5 APSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPED 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RA++ +NF L GK IR+M+S RDP+LRKSG GNIFIKNLDK ID+K L+DTFSAFGN
Sbjct: 65 AERAIDTMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV +L G+SKGYGFV F+ EE+A KAIEKL+GML+NDK+V+VG F + ER E
Sbjct: 125 ILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREY 184
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNV++KNL + L + FGE+G++ S + D +GKS+ FGFV+FE +
Sbjct: 185 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 244
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A + VE L+ K+F+ K+ +VG+AQKK+ER+ ELK +FE+ E ++QG NLY+KNLDD
Sbjct: 245 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 304
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNGKMVV 372
SI D+ L++ F+P+G+ITS KVM D S+G GFV F++ EEA++A+ EMNG+++
Sbjct: 305 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 364
Query: 373 SKPLYVALAQRKEDRRARLQAQFAQ 397
SKPLYVALAQRK++R+A LQ Q+ Q
Sbjct: 365 SKPLYVALAQRKDERKAHLQQQYMQ 389
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/378 (56%), Positives = 284/378 (75%), Gaps = 5/378 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+ +NF + GKP+R+M+
Sbjct: 2 LYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV +D NG SKG+GFV F
Sbjct: 62 SQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEE 217
+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN + +E
Sbjct: 121 ETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDE 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L FG +G I S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K YVG+
Sbjct: 181 TLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKK +R ELKH+FEQ ++ + ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KV
Sbjct: 241 AQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 301 MTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQ 359
Query: 398 MRPVAMASTVAPRMPMYP 415
R ++ S P P P
Sbjct: 360 -RMASVRSGPNPVNPYQP 376
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G +F T++Y+ + + D L LF + GQ++SV+V D +S G+G+V+F
Sbjct: 159 GTGTKEF--TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFER 215
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D S+R G N+++K
Sbjct: 216 HEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGI-NLYVK 274
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV T+ G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 275 NLDDGIDDERLQKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIV 333
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 334 ATKPLYVALAQRKEER-----QAHLTNQYIQRMA 362
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 297/398 (74%), Gaps = 5/398 (1%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/473 (47%), Positives = 307/473 (64%), Gaps = 62/473 (13%)
Query: 6 AQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
AQG N + G A + + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD
Sbjct: 41 AQGDNADAAGPTPGSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAV 100
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++ + +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD
Sbjct: 101 TRRSLGYAYVNYNTTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLD 160
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
AID+KALHDTF+AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K
Sbjct: 161 VAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEK 220
Query: 181 QVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+VYVGH + K++R ++ K+ FTN+YVKN++ T+++ + F +G +TS+ + RD
Sbjct: 221 KVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQ 280
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+GKS+ FGFVNF + AA+AV+ LNGK F ++ YVG+AQKK ERE EL+ +E E
Sbjct: 281 EGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARME 340
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD------------------ 340
A K+QG NLYIKNLDD +DDEKL+QLF+ FG ITS KVMRD
Sbjct: 341 KASKYQGVNLYIKNLDDEVDDEKLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKEN 400
Query: 341 ---------------------------------PSGISRGSGFVAFSTPEEASRALLEMN 367
P G S+G GFV FS P++A++A+ EMN
Sbjct: 401 EPKKEEGEEKAEEAKSEDKEDADKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMN 460
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA----PRMPMYPP 416
+MV KPLYVALAQRK+ R+++L+A + M A P+ M PP
Sbjct: 461 QRMVNGKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGMPQQYMQPP 513
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/431 (50%), Positives = 290/431 (67%), Gaps = 53/431 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQA 393
RK+ RR++L+A
Sbjct: 454 RKDVRRSQLEA 464
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 170/321 (52%), Gaps = 21/321 (6%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+NG +DK+ +VG K +R+ E+K F N+YIKN+D ++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVE 235
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+ ++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 379 ALAQRKEDRRARLQAQFAQMR 399
AQ+K +R L+ Q+ R
Sbjct: 296 GRAQKKHEREEELRKQYEAAR 316
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 68/244 (27%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ V D + LF + G++ S + RD S +S G+G+VNFS + A A+E
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVE 281
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + + + R H R+ LRK N+++KNL +D
Sbjct: 282 EMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDK 341
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L + F +G I S KV D
Sbjct: 342 LRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEK 401
Query: 149 ------------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R ++
Sbjct: 402 KEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Query: 197 INKS 200
+ S
Sbjct: 462 LEAS 465
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/395 (58%), Positives = 289/395 (73%), Gaps = 7/395 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++ ++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF L KPIR+M+S RDPSLR+SG GN+FIKNLDK ID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLLRNKPIRIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A AIEK+NGMLLN K+VYVG F+ ++ER+ ++ K+K F
Sbjct: 123 TDDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + +E L++ F YG ITS VM DGKSKCFGFV FE ++ A AVEA
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK D K YV +AQKK+ER+ ELK +FE+ K+ + G NLY+KNLDD+IDDE+
Sbjct: 243 LNGKDMGDGKALYVARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDER 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FS FG+ITS KVM D G S+G GFV F P EA+ A+ EMNG++V SKPLYVALA
Sbjct: 303 LRKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF----AQMRPVAMASTVAPRMP 412
QRKEDR+A L +Q+ A MR + P P
Sbjct: 363 QRKEDRKAHLASQYMRHMAGMRMQQIGQMFQPNTP 397
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/431 (50%), Positives = 290/431 (67%), Gaps = 53/431 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEEKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQA 393
RK+ RR++L+A
Sbjct: 454 RKDVRRSQLEA 464
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 170/321 (52%), Gaps = 21/321 (6%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+NG +DK+ +VG K +R+ E+K F N+YIKN+D ++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVE 235
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+ ++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 379 ALAQRKEDRRARLQAQFAQMR 399
AQ+K +R L+ Q+ R
Sbjct: 296 GRAQKKHEREEELRKQYEAAR 316
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 68/244 (27%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ V D + LF + G++ S + RD S +S G+G+VNFS + A A+E
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVE 281
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + + + R H R+ LRK N+++KNL +D
Sbjct: 282 EMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDK 341
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L + F +G I S KV D
Sbjct: 342 LRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEE 401
Query: 149 ------------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R ++
Sbjct: 402 KEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Query: 197 INKS 200
+ S
Sbjct: 462 LEAS 465
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/438 (49%), Positives = 301/438 (68%), Gaps = 44/438 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN++ ++++ ++ F YG ITS+ + RD DGKS+ FGFVN+ + A +AV
Sbjct: 238 NFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DDE
Sbjct: 298 DELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDE 357
Query: 321 KLKQLFSPFGSITSCKVMRD-PS------------------------------------- 342
KL+ +FS FG ITS KVMRD PS
Sbjct: 358 KLRHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKF 417
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVA 402
G S+G GFV FS P++A++A+ EM+ +M+ KPLYVALAQRK+ R+++L+A +
Sbjct: 418 GKSKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLEASIQARNQLR 477
Query: 403 MASTVA----PRMPMYPP 416
M A P+ M PP
Sbjct: 478 MQQAAAAAGMPQQYMQPP 495
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I S
Sbjct: 63 MNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
AF T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/431 (50%), Positives = 290/431 (67%), Gaps = 53/431 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQA 393
RK+ RR++L+A
Sbjct: 454 RKDVRRSQLEA 464
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 170/321 (52%), Gaps = 21/321 (6%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+NG +DK+ +VG K +R+ E+K F N+YIKN+D ++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVE 235
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+ ++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 379 ALAQRKEDRRARLQAQFAQMR 399
AQ+K +R L+ Q+ R
Sbjct: 296 GRAQKKHEREEELRKQYEAAR 316
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 68/244 (27%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ V D + LF + G++ S + RD S +S G+G+VNFS + A A+E
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVE 281
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + + + R H R+ LRK N+++KNL +D
Sbjct: 282 EMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDK 341
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L + F +G I S KV D
Sbjct: 342 LRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEK 401
Query: 149 ------------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R ++
Sbjct: 402 KEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Query: 197 INKS 200
+ S
Sbjct: 462 LEAS 465
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/396 (53%), Positives = 290/396 (73%), Gaps = 5/396 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+RVCRD T RSLGY YVNF + +A R +
Sbjct: 111 SLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTD 170
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + GKP+R+M+S RDPSLRKSG GN+F+KNL+K+I++K+L+D FS+FGNILSCKV
Sbjct: 171 MNLYIIKGKPVRLMWSQRDPSLRKSGIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVI 230
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
TD NG SKGYGFV F++ ESA++AI+K+NG+LLND +++VGHF +++R++E+ +F
Sbjct: 231 TDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQTREF 289
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E E+ L K F ++G S VMRD G+SK FGFVNF+ +DA A++
Sbjct: 290 TNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDN 349
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + ++ Y G+AQKK ER+ +L+ FEQ + ++QG NLYIKNLDD IDDE L
Sbjct: 350 MNGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENL 409
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS FG+ITS KVM + +G S+G GFV FS PEEA+ A+ EMNG++V SKPLYVALAQ
Sbjct: 410 RKEFSSFGTITSAKVMMN-NGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQ 468
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
RKE+R+A L Q+ Q R + ST P + Y GA
Sbjct: 469 RKEERKAHLANQYVQ-RMARIRSTATPTLGPYRTGA 503
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 166/296 (56%), Gaps = 27/296 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +LE ++ + LYD F+ G ++S +V D + S GYG+V+F + + A RA
Sbjct: 196 GIGNVFVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG--SKGYGFVHFEHRESAERA 253
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
++ +N LN I V + S +D R+S G N++IKN + +D L F
Sbjct: 254 IQKMNGILLNDLKIFVGHFKSRKD---RESELGAQTREFTNVYIKNFGEDMDEDRLSKIF 310
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
FG LS KV D G+SKG+GFV F E AQ AI+ +NG LN +Q+Y G +K E
Sbjct: 311 EKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLE 370
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R T++ + + N+Y+KNL + +E+L+K F +GTITSA VM + +G
Sbjct: 371 RQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN-NG 429
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+SK FGFV F ++A AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 430 RSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQRKEERKAHLANQYVQRM 485
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 26/200 (13%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
S ++YV +L TE L + F G I S V RD +S + +VNF++ DA R
Sbjct: 107 STMASLYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAER 166
Query: 259 AVEALNGKKFDDKEWYVGKAQKK----SERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+ +N Y+ K + S+R+ L+ K N+++KNL+
Sbjct: 167 VMTDMN--------LYIIKGKPVRLMWSQRDPSLR------------KSGIGNVFVKNLE 206
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
SI+++ L FS FG+I SCKV+ D +G S+G GFV F E A RA+ +MNG ++
Sbjct: 207 KSINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMNGILLNDL 265
Query: 375 PLYVALAQRKEDRRARLQAQ 394
++V + ++DR + L AQ
Sbjct: 266 KIFVGHFKSRKDRESELGAQ 285
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/408 (55%), Positives = 296/408 (72%), Gaps = 16/408 (3%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGD+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 42 FHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAER 101
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + G P R+M+S RDPSLRKSG GNIF+KNLD +ID+KAL+DTFS FGNILS
Sbjct: 102 ALDTMNFTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILS 161
Query: 141 CKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
CKVA + G SKGYG+V ++ E+A +AI K+NGML+ +V+VG F ++Q+R +
Sbjct: 162 CKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDRP---DA 218
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD--GDGKSKCFGFVNFENSDDAA 257
+TN YVKN+ T+ DL K F +G + SAVVM+D ++ FGFVN+E SD A
Sbjct: 219 DDWTNCYVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAH 278
Query: 258 RAVEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+AV+ALNGK + D E YVGKAQK+SERE EL+++FEQ E +K+QG NLY+KN
Sbjct: 279 KAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVNLYVKN 338
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDD + D++L++ F+ G+ITS +VMRDP+G SRG GFV FSTPEEA++A+ EMNGK++
Sbjct: 339 LDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLIS 398
Query: 373 SKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR-MPMYPPGAW 419
KP+YVALAQRKE RRA+L+AQ AQ R A V R MPM P +
Sbjct: 399 GKPVYVALAQRKEVRRAQLEAQHAQQR----AGMVVGRGMPMGQPPMY 442
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/412 (52%), Positives = 287/412 (69%), Gaps = 16/412 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ VT+S LY+ F+ +G V S+RVCRD T+RSLGYGYVNF + RALE
Sbjct: 53 SLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEE 112
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+ + G R+M+S RDPSLR+SG+GNIFIKNLD AI++K LHDTFS+FG +LSCKVA
Sbjct: 113 LNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVA 172
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
TD NG SKG+GFV ++++E+AQ AIE +NGMLLN +++YVG L K++R++ + +
Sbjct: 173 TDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEMIKNY 232
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN +TE++L++ F YG ITS + D +G +K FGFVNF DDA +AVEA
Sbjct: 233 TNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEA 292
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN K++ K YVG+AQKK+ER EL ++E + E K+Q NL+IKNLD+SIDD +L
Sbjct: 293 LNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARL 352
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ F PFG+ITS KVM D +G SRG GFV STPEEA++A+ EMN +MV +KPLYVALAQ
Sbjct: 353 EEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQ 412
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMP--------------MYPPGAWI 420
K RR++L Q + M P +P M PPGA +
Sbjct: 413 PKAIRRSQLAQQIQARNQMRMQQQAGPGIPNQFVQPIFYGQQPGMLPPGARV 464
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 152/291 (52%), Gaps = 21/291 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L+ + + L+D F+ G+V+S +V D S G+G+V++ + + A A
Sbjct: 138 GSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATD-ENGNSKGFGFVHYESDEAAQAA 196
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKS-------GAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N LNG+ I V H R+S N+F+KN D L + F +
Sbjct: 197 IENINGMLLNGREIYVG-PHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFES 255
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
+G I S + D G +KG+GFV F + A KA+E LN K +YVG +K ER
Sbjct: 256 YGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERV 315
Query: 195 TEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K + N+++KNL ES + L++ F +GTITSA VM D +GKS
Sbjct: 316 HELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKS 375
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ FGFV ++A +A+ +N + +K YV AQ K+ R +L Q +
Sbjct: 376 RGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQLAQQIQ 426
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ LD ++ + L + FSP GS+ S +V RD + S G G+V F + RAL
Sbjct: 52 ASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALE 111
Query: 365 EMN 367
E+N
Sbjct: 112 ELN 114
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/438 (49%), Positives = 300/438 (68%), Gaps = 45/438 (10%)
Query: 1 MAQVQAQGQNVNGGGANANQFG-----TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV 55
+A Q Q ++ G G N + SLYVG+L+ +VT++ L++LF+Q+G V S+RV
Sbjct: 86 VAAGQFQNEDQEGAGPTPNSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRV 145
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRD TRRSLGY YVN++ + +ALE LN+T + G+P R+M+S RDP+LRK+G GN+F
Sbjct: 146 CRDAVTRRSLGYAYVNYNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVF 205
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLD AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A AI+ +NGM
Sbjct: 206 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGM 265
Query: 176 LLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LLN+K+VYVG+ + K++R ++ K+ FTNVYVKN+ T+E+ ++ F +YG +TS+
Sbjct: 266 LLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSS 325
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ R +GKS+ FGFVNF + A++AVE LNGK F +E YVG+AQKK ERE EL+ +E
Sbjct: 326 LARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYE 385
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS----------- 342
+E A+K+QG NLYIKNL D +DD+KL+Q+FS +G ITS KVMRD
Sbjct: 386 AARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKVMRDSVVESAAEDEKDK 445
Query: 343 ---------------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
G S+G GFV FS P++A++A+ EMN +M+ +KP
Sbjct: 446 ENKKEDEEEKEGETAEKKAETKEKRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKP 505
Query: 376 LYVALAQRKEDRRARLQA 393
LYVALAQRK+ R+++L+A
Sbjct: 506 LYVALAQRKDVRKSQLEA 523
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 113 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 172
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 173 EDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 228
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + AA A++ +NG ++K+ YVG K +R+
Sbjct: 229 LSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFE 288
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ + DE+ ++LF+ +G +TS + R G SR
Sbjct: 289 EMKANF-------------TNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSR 335
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E AS+A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 336 GFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAAR 388
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 55/231 (23%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ A VTD + +LF + G V S + R +S G+G+VNF+ + A++A+E
Sbjct: 295 TNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARS-DEGKSRGFGFVNFTTHEAASKAVE 353
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LR+S N++IKNL +D
Sbjct: 354 ELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDK 413
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------G 149
L FS +G I S KV D G
Sbjct: 414 LRQMFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEKRKLG 473
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+SKG+GFV F N + A KA+ ++N ++++K +YV RK R +++ S
Sbjct: 474 KSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRKDVRKSQLEAS 524
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/373 (54%), Positives = 282/373 (75%), Gaps = 2/373 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD T+ SLGY YVN+++ + +A++
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+ +NG+P R+M+S RDP++RK G+GNIFIKNL AID+KALH+TFS FG +LSCKVA
Sbjct: 111 LNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVA 170
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D NG S+G+GFV F E A+ AIE +NGML+N +VYV + K++R +++ ++K F
Sbjct: 171 LDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANF 230
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKN+ TT+E+ ++ F +YG I SA + +D +GK K FGFVNF + + AA+AVE
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNGK+F + YVG+AQKK ER ELK Q+EQ E KFQG NL+IKNLDDSIDDEKL
Sbjct: 291 LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKL 350
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+P+G+ITS +VMRD G S+G GFV FS+PEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 351 KEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQ 410
Query: 383 RKEDRRARLQAQF 395
RK+ RR++L Q
Sbjct: 411 RKDVRRSQLAQQI 423
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ TD + LF+Q G++VS + +D + + G+G+VNF + AA+A+E
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVE 289
Query: 84 MLNFTPLNGKPIRV----------------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN + + V +R L K N+FIKNLD +ID +
Sbjct: 290 ELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK 349
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F+ +G I S +V D G SKG+GFV F + E A KA+ + N ++ K +YV
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 188 LRKQERDTEI 197
RK R +++
Sbjct: 410 QRKDVRRSQL 419
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ LD +I + L +FSP G I+S +V RD + S G +V ++ E +A+
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 365 EMNGKMVVSKPLYVALAQR 383
E+N + +P + ++R
Sbjct: 110 ELNYAEINGRPCRIMWSER 128
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/254 (79%), Positives = 232/254 (91%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
AQ AI+KLNGML+NDKQVYVGHFLRKQER++ +KF NVYVKNLSESTT++ L+K FG
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
E+G ITSAVVMRD DGKSKCFGF+NFE ++DAA+AVE+LNGKKFDDKEWYVGKAQKKSER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E ELK +FEQ KEA DK+QG NLY+KNLDD+IDDEKLK+LFS FG+ITSCKVMRDPSGI
Sbjct: 121 EQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGI 180
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA 404
SRGSGFVAFST EEASRAL EMNGKM+VSKPLYVALAQRKE+RRA+L+AQF+Q+RPVAM
Sbjct: 181 SRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQLRPVAMP 240
Query: 405 STVAPRMPMYPPGA 418
++APRMP+YPPGA
Sbjct: 241 PSLAPRMPIYPPGA 254
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 18/197 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YV +L + TD L +F + G + S V RD + +S +G++NF A++AA+A+E
Sbjct: 40 NVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVES 98
Query: 85 LNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKAL 128
LN + K V S R+ L+ K N+++KNLD ID + L
Sbjct: 99 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKL 158
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ FS FG I SCKV D +G S+G GFV F E A +A+ ++NG ++ K +YV
Sbjct: 159 KELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 218
Query: 189 RKQERDTEINKSKFTNV 205
RK+ER ++ +++F+ +
Sbjct: 219 RKEERRAKL-RAQFSQL 234
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/380 (58%), Positives = 289/380 (76%), Gaps = 5/380 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD+ TRRSLGY YVNF +A R
Sbjct: 13 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 73 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ D +G S+GYGFV F+ EE+A+ AIEK+NGMLLN K+V+VG F+ ++ER +
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDK 191
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR-DGDGKSKCFGFVNFENSDDAA 257
KF NVYVKN SE +E L+ F YG I SA VM DG GK K FGFV+FE+ + A
Sbjct: 192 MRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAE 251
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVEALNG K YVG+AQKK ER+ ELK +FE+ E +++QG NLY+KNLDD+I
Sbjct: 252 KAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNI 311
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ F+ FG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++VV+KPLY
Sbjct: 312 DDERLRKEFAQFGTITSAKVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLY 370
Query: 378 VALAQRKEDRRARLQAQFAQ 397
VALAQRKEDR+A L +Q+ Q
Sbjct: 371 VALAQRKEDRKAHLASQYMQ 390
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 172/295 (58%), Gaps = 24/295 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ ++ + LYD F+ G ++S + VC + +R GYG+V+F + A
Sbjct: 102 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHGSR---GYGFVHFETEEAARI 158
Query: 81 ALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSA 134
A+E +N LNGK + V + R L G N+++KN + I+ + L D F
Sbjct: 159 AIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDETLRDMFEP 218
Query: 135 FGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G I+S KV TD +G+ KG+GFV F++ E+A+KA+E LNG + K +YVG +K ER
Sbjct: 219 YGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIER 278
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E IN+ + N+YVKNL ++ +E L+K F ++GTITSA VM +G G+
Sbjct: 279 QAELKEKFERIRMERINRYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEG-GR 337
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 338 SKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLASQYMQRI 392
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 160/289 (55%), Gaps = 17/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L + FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + + + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 77 MNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D G S+ +GFV+FE + A A+E +NG + K+ +VG+ + ER LE+
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRER-LEV--- 187
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGF 350
+ + KF N+Y+KN + I+DE L+ +F P+G I S KVM D SG +G GF
Sbjct: 188 ----LGDKMRKFN--NVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGF 241
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F PE A +A+ +NG K LYV AQ+K +R+A L+ +F ++R
Sbjct: 242 VSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIR 290
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L+ N+ D +L F Q G + S +V + RS G+G+V FS+ +EA
Sbjct: 295 NRYQGVNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEGG--RSKGFGFVCFSSPEEA 352
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + KP+ V + R
Sbjct: 353 TKAVTEMNGRIVVAKPLYVALAQR 376
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/442 (49%), Positives = 303/442 (68%), Gaps = 48/442 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+ED ++ F ++G +TS+ + RD +GK++ FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 298 EELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 321 KLKQLFSPFGSITSCKVMRD-PS------------------------------------- 342
KL+Q+F+ FG ITS KVMRD P
Sbjct: 358 KLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTEKKS 417
Query: 343 ----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R+++L+A
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 399 RPVAMASTVA----PRMPMYPP 416
+ M A P+ M PP
Sbjct: 478 NQLRMQQAAAAAGMPQQYMQPP 499
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/379 (56%), Positives = 286/379 (75%), Gaps = 5/379 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ +VT++ LYDLF+ +G V S+RVCRD T+ SLGY YVNF + A+E L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N+TP+ G+P R+M+S RDPSLRK G+GN+FIKNL AID+KALHDTFS FGNILSCK+AT
Sbjct: 102 NYTPIKGRPCRIMWSQRDPSLRKKGSGNVFIKNLHPAIDNKALHDTFSVFGNILSCKIAT 161
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D G+S+ +GFV F+ EE+A++AI+ +NGMLLN +VYV + K++R ++++ KS FT
Sbjct: 162 DETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHVSKKDRQSKLDEVKSNFT 221
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKN+ TT+E+ +K F YG ITSAV+ RD +GK + FGFVNFE+ + A +A E L
Sbjct: 222 NVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEEL 281
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N F ++ YVG+AQKK ER ELK Q+E + E K+QG NL++KNLDDS+DD+KL+
Sbjct: 282 NDTDFKGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQKLE 341
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F+PFG+ITS KVMRD +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQR
Sbjct: 342 EEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQR 401
Query: 384 KEDRRARLQAQFA---QMR 399
KE RR++L Q QMR
Sbjct: 402 KEVRRSQLAQQIQARNQMR 420
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/464 (47%), Positives = 309/464 (66%), Gaps = 62/464 (13%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++
Sbjct: 51 AAAHPQASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAVTRRSLGYAYVNYNST 110
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ +ALE LN+T + +P R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AF
Sbjct: 111 ADGEKALEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDAAIDNKALHDTFAAF 170
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R +
Sbjct: 171 GNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 230
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFEN 252
+ K+ +TN+Y+KNL T+++ +K F +YG +TS+ + RD + GKS+ FGF+NF
Sbjct: 231 KFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTT 290
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ AA+AVE LN ++ +E YVG+AQKK ERE EL+ +E +E A K+ G NLYIKN
Sbjct: 291 HESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKN 350
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPS------------------------------ 342
LDD +DDEKL++LF+P+G ITS KVMR+ +
Sbjct: 351 LDDEVDDEKLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEG 410
Query: 343 --------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G S+G GFV FS P++A++A+ EMN +MV KPLYVA+AQ
Sbjct: 411 AAEGEADASGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQ 470
Query: 383 RKEDRRARLQAQFAQMRPVAM--ASTVA--PRMPM-----YPPG 417
+KE R+++L+A + M A+ VA P+ M YPPG
Sbjct: 471 KKEVRKSQLEASIQARNTLRMQQAAAVAGLPQTYMQPQVYYPPG 514
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/372 (57%), Positives = 279/372 (75%), Gaps = 1/372 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++E++ FTN
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTN 182
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+ALN
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 242
Query: 265 GKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
GK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++L+
Sbjct: 243 GKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLR 302
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALAQR
Sbjct: 303 IAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQR 362
Query: 384 KEDRRARLQAQF 395
KE+R+A L +Q+
Sbjct: 363 KEERKADLASQY 374
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 162/289 (56%), Gaps = 18/289 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I S
Sbjct: 63 MNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + E+EL
Sbjct: 119 CKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQEL----- 173
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 174 -----GEKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 226
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
AF T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 227 AFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 275
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 162/293 (55%), Gaps = 20/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGN 137
++ +N LNGK + V ++ L + N+++KN + D + L + F +G
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK 206
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTE 196
I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER E
Sbjct: 207 ITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQE 266
Query: 197 INKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+SK
Sbjct: 267 L-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSK 325
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F +A AV LNG+ K YV AQ+K ER+ +L Q+ ++M
Sbjct: 326 GFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQRKEERKADLASQYMRHM 378
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/383 (54%), Positives = 292/383 (76%), Gaps = 6/383 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L+ V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + +A+
Sbjct: 39 TASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAI 98
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPSLRK G+GNIFIKNL ID+KALHDTFS FGNILSCK
Sbjct: 99 EKLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCK 158
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ATD + G SKG+GFV F+++E+A++AI+ +NGMLLN ++VYV + +++R +++ ++K
Sbjct: 159 IATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAK 218
Query: 202 --FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
FTNVY+KN+S T E++ ++ F + +TS + +D +GK + FGFVN+E AA+A
Sbjct: 219 ANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKA 278
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE LNG +F ++ +VG+AQKK ER+ EL+ Q+EQ+ E +K+QG NL+IKNLDDSIDD
Sbjct: 279 VEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDD 338
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E+L++ FSPFG+ITS KVM +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA
Sbjct: 339 ERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 398
Query: 380 LAQRKEDRRARLQAQFA---QMR 399
+AQRK+ RR++L Q QMR
Sbjct: 399 IAQRKDVRRSQLAQQIQARNQMR 421
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 154/290 (53%), Gaps = 18/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L A++ + L+D F+ G ++S ++ D T S G+G+V+F + + A A
Sbjct: 126 GSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREA 185
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNG+ + V R L ++ A N++IKN+ + + F
Sbjct: 186 IDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKV 245
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
+ S + D G+ +G+GFV ++ A KA+E+LNG+ + +Q++VG +K ER
Sbjct: 246 APVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQ 305
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K + N+++KNL +S +E L++ F +GTITS VM +GKSK
Sbjct: 306 ELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKSK 365
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 366 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 415
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 18/201 (8%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 252
D++ ++ ++YV L + +E L F G+++S V RD K+ + +VNF +
Sbjct: 31 DSQKVETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 90
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ +A+E LN + + S+R+ L+ K N++IKN
Sbjct: 91 YEAGRQAIEKLNYTPIKGQPCRI----MWSQRDPSLR------------KKGSGNIFIKN 134
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV 371
L ID++ L FS FG+I SCK+ D +G S+G GFV F + E A A+ +NG ++
Sbjct: 135 LHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLL 194
Query: 372 VSKPLYVALAQRKEDRRARLQ 392
+ +YVA ++DR+++L+
Sbjct: 195 NGQEVYVAPHVSRKDRQSKLE 215
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/414 (51%), Positives = 292/414 (70%), Gaps = 43/414 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+E+ ++ F ++G +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 342 --SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 472
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 161/291 (55%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+E+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL + + L +F +G I S
Sbjct: 121 LNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILS 176
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+ E+
Sbjct: 177 CKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEM 236
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+Y+KN+++ + DE+ ++LF+ FG +TS + RD G SRG
Sbjct: 237 KANF-------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGF 283
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F+T E A++A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 284 GFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 58/234 (24%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ VTD + +LF + G+V S + RD +S G+G+VNF+ + AA+A++
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHEAAAQAVD 299
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRKS N++IKNL +D
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDK 359
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L FS +G I S KV D
Sbjct: 360 LRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDR 419
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 420 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEAS 473
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/350 (60%), Positives = 271/350 (77%), Gaps = 4/350 (1%)
Query: 50 VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS 109
V+S+RVCRD+ TRRSL Y YVNF +A RAL+ +NF + GKPIR+M+S RDPSLRKS
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 83
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +++A +AI
Sbjct: 84 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAI 142
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
EK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN + +E L++ FG+YG
Sbjct: 143 EKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYG 202
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S VM D GKSK FGFV+FE ++A +AVE +NGK + K +VG+AQKK ER+ E
Sbjct: 203 KTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 262
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
LK +FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G
Sbjct: 263 LKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKG 321
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
GFV FS+PEEA++A+ EMNG++V SKPLYVALAQRKE+R+A L Q+ Q
Sbjct: 322 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 371
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 167/293 (56%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 84 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 141
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + F +
Sbjct: 142 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKY 201
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 202 GKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQA 261
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+SK
Sbjct: 262 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSK 320
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 321 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 373
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 155/263 (58%), Gaps = 16/263 (6%)
Query: 138 ILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+LS +V D+ +S Y +V F A++A++ +N ++ K + + +RD
Sbjct: 24 VLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW----SQRDPS 79
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ KS NV++KNL +S + L +F +G I S V+ D +G SK + FV+FE D A
Sbjct: 80 LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAA 138
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
RA+E +NG +D++ +VG+ + + ERE EL A + N+YIKN D
Sbjct: 139 DRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GAKAKEFTNVYIKNFGDD 188
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE+LK+LF +G S KVM DP+G S+G GFV+F EEA++A+ EMNGK + K +
Sbjct: 189 MDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMV 248
Query: 377 YVALAQRKEDRRARLQAQFAQMR 399
+V AQ+K +R+A L+ +F Q++
Sbjct: 249 FVGRAQKKVERQAELKRRFEQLK 271
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/403 (53%), Positives = 288/403 (71%), Gaps = 24/403 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST------RRS------ 64
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD RRS
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPELL 63
Query: 65 --------LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
+ + + + RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFI
Sbjct: 64 PAPQPGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFI 123
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 124 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 182
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S V
Sbjct: 183 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 242
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ
Sbjct: 243 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 302
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS
Sbjct: 303 MKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFS 361
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 362 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 404
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 168/318 (52%), Gaps = 36/318 (11%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-------------- 148
+PS ++++ +L + L++ FS G ILS +V D
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDXXXXXXXRWRRSHHPE 61
Query: 149 -------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
G+ + + E +++A++ +N ++ K V + +RD + KS
Sbjct: 62 LLPAPQPGEEVQFCARKIPRVEPSERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSG 117
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E
Sbjct: 118 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 176
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG +D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+
Sbjct: 177 KMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDER 226
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK LF FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV A
Sbjct: 227 LKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 286
Query: 382 QRKEDRRARLQAQFAQMR 399
Q+K +R+ L+ +F QM+
Sbjct: 287 QKKVERQTELKRKFEQMK 304
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/375 (54%), Positives = 287/375 (76%), Gaps = 2/375 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+LE ++ ++ L+++F+ +GQV S+RVCRD T+RSLGY YVN+ N ++ +A+
Sbjct: 59 TASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAI 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN++ + G+PIR+M+S RDP+ R++G GN+FIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 119 DELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFGRILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--S 200
VATD GQSKG+GFV F++ E+AQ AIE +NGMLLN+ +VYVG + +++R +++ +
Sbjct: 179 VATDNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVIK 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ +EE++++ F +GT+TS + +D +GKS+ F FVN+E + A +++
Sbjct: 239 SFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSI 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E+LN + + K+ YVG+AQKKSER ELK Q+E E K QG NL++KNLDDSIDDE
Sbjct: 299 ESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDE 358
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F FG+I+S KVM D SG S+G GFV+FS+PEEASRA+ EMN M+ KPLYVAL
Sbjct: 359 KLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVAL 418
Query: 381 AQRKEDRRARLQAQF 395
AQRK+ RR++L+ Q
Sbjct: 419 AQRKDVRRSQLEQQI 433
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/463 (47%), Positives = 305/463 (65%), Gaps = 61/463 (13%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
AN N + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A
Sbjct: 50 ANPN---SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 106
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 107 ADGERALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 166
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G SKGYGFV ++ ++A +AI+ +NGMLLN+K+V+VGH + K++R +
Sbjct: 167 GNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMS 226
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ TT+++ ++ F +YG ITSA + D GK + FGFVNF
Sbjct: 227 KFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRH 286
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DAA+AV+ LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+QG NLY+KNL
Sbjct: 287 EDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNL 346
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPS------------------------------- 342
D IDDE+L+++F P+G+ITS KVMRD +
Sbjct: 347 ADEIDDEELRKIFEPYGAITSAKVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKD 406
Query: 343 ---------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
G S+G GFV FS P+EA++A+ E+N KM+ SKPLYVALA
Sbjct: 407 DADELAKKLDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALA 466
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVA----PRMPMYPPGAWI 420
QRKE R+++L+A V M P+ M PP +I
Sbjct: 467 QRKEVRKSQLEASIQARNQVRMQQQATAGGLPQQFMAPPQMFI 509
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 158/297 (53%), Gaps = 15/297 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 47 PTNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 106
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E+LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 107 ADGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 162
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V D G SK +GFV++E SD A +A++++NG ++K+ +VG K
Sbjct: 163 FAAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKK 222
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R +FE+ K N+Y+KN+D D++ ++LF +G ITS + D
Sbjct: 223 DR----MSKFEEM------KANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQ 272
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G RG GFV F E+A++A+ E+N + LYV AQ+K +R L+ Q+ R
Sbjct: 273 GKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQR 329
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/444 (49%), Positives = 301/444 (67%), Gaps = 50/444 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+S ++++ ++ F +YG ITS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E L+GK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 299 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 358
Query: 321 KLKQLFSPFGSITSCKVMRD-PSGISRGS------------------------------- 348
KL+Q+F+ FG ITS KVMRD PS S
Sbjct: 359 KLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADK 418
Query: 349 ------------GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+A
Sbjct: 419 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQ 478
Query: 397 QMRPVAMASTVA----PRMPMYPP 416
+ M A P+ M PP
Sbjct: 479 ARNQLRMQQAAAAAGMPQQYMQPP 502
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/413 (51%), Positives = 292/413 (70%), Gaps = 42/413 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+E+ ++ F ++G +TS+ + RD +GK++ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDR 418
Query: 342 -SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 419 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 471
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 161/291 (55%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+E+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL + + L +F +G I S
Sbjct: 121 LNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILS 176
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+ E+
Sbjct: 177 CKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEM 236
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+Y+KN+++ + DE+ ++LF+ FG +TS + RD G +RG
Sbjct: 237 KANF-------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGF 283
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F+T E A++A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 284 GFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 57/233 (24%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ VTD + +LF + G+V S + RD ++ G+G+VNF+ + AA+A++
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKTRGFGFVNFTTHEAAAQAVD 299
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRKS N++IKNL +D
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDK 359
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------L 147
L FS +G I S KV D
Sbjct: 360 LRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDRK 419
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 420 LGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEAS 472
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/378 (55%), Positives = 278/378 (73%), Gaps = 4/378 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL+ NVT+ QL+++F+ +G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 21 LASASLYVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAER 80
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + GK R+M+ HRDPS+RKSGAGNIFIKNLDK +D + LHDTFS FGNILS
Sbjct: 81 ALDTLNYTQIKGKACRIMWKHRDPSIRKSGAGNIFIKNLDKTVDTRTLHDTFSQFGNILS 140
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKV+ D + S+G+GFVQF+ E A +AI K+NGMLL DK+++VG F+ + ER++ +
Sbjct: 141 CKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFIPRGERESTNGER 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVYVKN ++ +++D +KSF YG ITS +MR DG SKCFGFVNF+ +DDA +
Sbjct: 201 RFTNVYVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCC 260
Query: 261 EALNGKKF--DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
E +NG+K +++ Y G+A+K+SER+ +LK +++Q E Q NLYIKNLDD+ID
Sbjct: 261 EEMNGQKPFGGERDIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTID 320
Query: 319 DEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
DEKL+Q F FG+ITS KVMRD +S+G GFV F+ PEEA+RA+ MNG+MV +KP+
Sbjct: 321 DEKLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPI 380
Query: 377 YVALAQRKEDRRARLQAQ 394
YVAL Q E RR AQ
Sbjct: 381 YVALHQPIEIRRQMQAAQ 398
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 281/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLY+KNLDD DD+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 381 AQRKEDRRARLQAQFAQ 397
AQRK+ RR L++Q AQ
Sbjct: 405 AQRKDVRRQALESQIAQ 421
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 132 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 190
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 191 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 249
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV ++N ESA+KA+++LN +N K++Y G K ER+
Sbjct: 250 FGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 309
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+YVKNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 310 AELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 369
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 370 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 425
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + F+ G + S +V D + +S GY +V + N ++A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL +S + L +F +G I S
Sbjct: 107 LNYSLIKGQSCRI----MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER---ELEL 288
V D +GKS+ F FV++ + A A++A+NG +DK+ YVG K ER EL
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 222
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ QF N+YIKN+D + D + + L PFG S + RD G+S+G
Sbjct: 223 RAQF-------------TNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGF 269
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV + E A +A+ E+N K V K LY AQ K +R A L+ + R
Sbjct: 270 GFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKR 320
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/377 (54%), Positives = 281/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 107 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 167 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 227 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLYIKNLDD DD+
Sbjct: 287 DELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDD 346
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 347 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 406
Query: 381 AQRKEDRRARLQAQFAQ 397
AQRK+ RR L++Q AQ
Sbjct: 407 AQRKDVRRQALESQIAQ 423
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 134 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 193 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 251
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV ++N ESA++A+++LN +N K++Y G K ER+
Sbjct: 252 FGPTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSERE 311
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+Y+KNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 312 AELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 371
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 372 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 427
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 149/291 (51%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + F+ G + S +V D + +S GY +V + N ++A+E
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL +S + L +F +G I S
Sbjct: 109 LNYSLIKGQSCRI----MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 164
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER---ELEL 288
V D +GKS+ F FV++ + A A++A+NG +DK+ YVG K ER EL
Sbjct: 165 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 224
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ QF N+YIKN+D + D + + L PFG S + RD G+S+G
Sbjct: 225 RAQF-------------TNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGF 271
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV + E A +A+ E+N K + K LY AQ K +R A L+ + R
Sbjct: 272 GFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKR 322
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/380 (54%), Positives = 288/380 (75%), Gaps = 5/380 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + +A+E
Sbjct: 36 SLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQ 95
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+TP+ G+ R+M+S RDP+LRK G+GNIFIKNL ID+KAL +TFS FGNILS K+A
Sbjct: 96 LNYTPIKGRLCRIMWSQRDPALRKKGSGNIFIKNLHPDIDNKALFETFSVFGNILSSKIA 155
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
TD G+SKG+GFV F++E SA++AI+ LNGMLLN +++YV L ++ERD+++ ++K F
Sbjct: 156 TDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHF 215
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN++ TT+E+ + F +YG + S+ + + DGK K FGFV+FE +DAA+AVE
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEE 275
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNG +F D+ +V +AQKK ER ELK Q+E + E K+QG NL++KNLDDSIDDEKL
Sbjct: 276 LNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKL 335
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+P+G+ITS +VMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 336 KEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 395
Query: 383 RKEDRRARLQAQF---AQMR 399
RK+ RR++L Q QMR
Sbjct: 396 RKDVRRSQLAQQIQARTQMR 415
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ TD + +LF + G V+S + + + G+G+V+F ++AA+A+E
Sbjct: 216 TNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLK-GFGFVDFEKHEDAAKAVE 274
Query: 84 MLNFTPLNGKPIRVMYSH----------------RDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN T + + V + R + K N+F+KNLD +ID +
Sbjct: 275 ELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEK 334
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F+ +G I S +V NG+SKG+GFV F E A KAI + N ++ K +YV
Sbjct: 335 LKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394
Query: 188 LRKQERDTEI 197
RK R +++
Sbjct: 395 QRKDVRRSQL 404
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ LD ++ + L +FSP GS++S +V RD + S G +V F+ E +A+
Sbjct: 35 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIE 94
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRAR 390
++N + + + +QR R +
Sbjct: 95 QLNYTPIKGRLCRIMWSQRDPALRKK 120
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/414 (50%), Positives = 292/414 (70%), Gaps = 43/414 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 180 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+++ ++ F ++G +TS+ + RD +GK++ FGFVNF + AA+AV
Sbjct: 240 NFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAV 299
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DDE
Sbjct: 300 DDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDE 359
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 360 KLRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGD 419
Query: 342 --SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 420 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 473
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 159/291 (54%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+E+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL + + L +F +G I S
Sbjct: 122 LNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILS 177
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+ E+
Sbjct: 178 CKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEM 237
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+Y+KN++ + D++ ++LF FG +TS + RD G +RG
Sbjct: 238 KANF-------------TNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGF 284
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F+T E A++A+ ++NGK + LYV AQ+K +R L+ + R
Sbjct: 285 GFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAAR 335
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 58/234 (24%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ VTD + +LF + G+V S + RD ++ G+G+VNF+ + AA+A++
Sbjct: 242 TNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARD-QEGKTRGFGFVNFTTHEAAAKAVD 300
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LR+S N++IKNL +D +
Sbjct: 301 DLNGKDFRGQDLYVGRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDEK 360
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L FS +G I S KV D
Sbjct: 361 LRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGDR 420
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 421 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEAS 474
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/390 (55%), Positives = 282/390 (72%), Gaps = 13/390 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ N +A RAL
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN TP+ GK R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCK
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKS 200
V TD SKG+GFV ++ +ESA KAI K+NGM++N ++V+VG F +ER TE+
Sbjct: 129 VVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEV--- 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNV+ KNLSE + L++ +YG IT+ +M D GKSK FGF NFE+++ A V
Sbjct: 186 KFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVV 245
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E NGK F K Y G+AQKK ERE ELKH FE K+QG NLYIKN+DDSID++
Sbjct: 246 ENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDND 298
Query: 321 KLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL+++FS FG+ITS VM+ D + S+G GFV ++ P+EA+RA+ EMNG+M+ +KPLYVA
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVA 358
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAP 409
LAQRK+ RRA+L+ Q Q + + P
Sbjct: 359 LAQRKDIRRAQLEMQHQQKFKTGIRQQMPP 388
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/427 (52%), Positives = 302/427 (70%), Gaps = 12/427 (2%)
Query: 2 AQVQAQGQNVNGG-----GANANQFGTTS--LYVGDLEANVTDSQLYDLFNQMGQVVSVR 54
A V Q NV+ G A+++Q TS LYVG+L +V ++ L+++F+ +GQV S+R
Sbjct: 21 APVATQETNVSSGNEGEDAADSSQLPDTSASLYVGELNPSVNEALLFEIFSPVGQVSSIR 80
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNI 114
VCRD T++SLGY YVNF ++ +A+E LN++ ++G+P R+M+S RDPSLR++G GNI
Sbjct: 81 VCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNI 140
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
FIKNL AID+KALHDTFSAFG ILSCKVATD G SK +GFV ++ E+A+ AIE +NG
Sbjct: 141 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNG 200
Query: 175 MLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
MLLND++VYVG + K++R+++ K+ FTNVYVKN+ +EE+++K F YG ITS
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSL 260
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ +D +GKSK FGFVNFE+ + A +AVE LN K + ++ YVG+AQKK ER ELK Q+
Sbjct: 261 HLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQY 320
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
E E K+QG NL++KNLDDSID KL++ F PFG+ITS +VM D G S+G GFV
Sbjct: 321 EAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVC 380
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMRPVAMASTVAP 409
FS+PEEA++A+ EMN +M KPLYVALAQRK+ RR++L+ Q QMR A+T
Sbjct: 381 FSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI 440
Query: 410 RMPMYPP 416
PP
Sbjct: 441 PGQFIPP 447
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/444 (49%), Positives = 301/444 (67%), Gaps = 50/444 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+Y+KN+S ++++ ++ F +YG ITS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 240 NFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 299
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E L+GK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 300 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 359
Query: 321 KLKQLFSPFGSITSCKVMRD-PSGISRGS------------------------------- 348
KL+Q+F+ FG ITS KVMRD PS S
Sbjct: 360 KLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADK 419
Query: 349 ------------GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+A
Sbjct: 420 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQ 479
Query: 397 QMRPVAMASTVA----PRMPMYPP 416
+ M A P+ M PP
Sbjct: 480 ARNQLRMQQAAAAAGMPQQYMQPP 503
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/415 (50%), Positives = 292/415 (70%), Gaps = 44/415 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 67 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKAL 126
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 127 EELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 186
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 187 VATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 246
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNVY+KN++ TEE+ ++ F ++G ITS+ + RD +GK + FGFVN+ AA+ V
Sbjct: 247 NYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCV 306
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E +NGK++ +E YVG+AQKK ERE EL+ +E E +K+QG NLYIKNL D +DDE
Sbjct: 307 EEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDE 366
Query: 321 KLKQLFSPFGSITSCKVMRD----PS---------------------------------- 342
KL+ +F+ FG ITS KVMRD P+
Sbjct: 367 KLRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKP 426
Query: 343 ----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV F+ P++A++A+ EMN +MV KPLYVALAQRKE R+++L+A
Sbjct: 427 ERKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEA 481
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 159/290 (54%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V +++ +KA+
Sbjct: 67 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGEKAL 126
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ K + +RD + K+ N+++KNL + + L +F +G I
Sbjct: 127 EELNYTLIKGKPCRI----MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNI 182
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V D +G SK +GFV++E + AA+A++ +NG ++K+ YVG K +R+
Sbjct: 183 LSCKVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ---- 238
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+YIKN++ + +E+ ++ FS +G ITS + RD G RG G
Sbjct: 239 SKFEEM------KANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFG 292
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV +ST A++ + EMNGK + LYV AQ+K +R L+ + R
Sbjct: 293 FVNYSTHASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAAR 342
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 59/235 (25%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ ++ VT+ + + F++ G++ S + RD + + G+G+VN+S AA+ +E
Sbjct: 249 TNVYIKNINLEVTEEEFREFFSKWGEITSSTLARD-AEGKPRGFGFVNYSTHASAAKCVE 307
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N G+ + R H R+ LRKS N++IKNL +D +
Sbjct: 308 EMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEK 367
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L F+ FG I S KV D
Sbjct: 368 LRAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKPE 427
Query: 149 ---GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N +++ K +YV RK+ R +++ S
Sbjct: 428 RKLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEAS 482
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/480 (48%), Positives = 304/480 (63%), Gaps = 64/480 (13%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N G + Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN
Sbjct: 43 NSAGPSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 102
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDT
Sbjct: 103 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFV 248
+R ++ K+ FTNVYVKNL + E+ ++ F +YG ITSA + RDG+ GKS+ FGFV
Sbjct: 223 DRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFV 282
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF + AA AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NL
Sbjct: 283 NFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNL 342
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG------------------------- 343
Y+KNL D IDDEKL+ LF FG+ITS +VMRD +G
Sbjct: 343 YVKNLTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKE 402
Query: 344 -------------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPL 376
+ + GF V FS P+EAS+A+ EMN +MV KPL
Sbjct: 403 SGEEDSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPL 462
Query: 377 YVALAQRKEDRRARLQAQFA------QMRPVAMASTVAPRMP---MYPPGAWIWLSAAAC 427
YVALAQRK+ R+++L+A Q + A A P M YPPG ++ A A
Sbjct: 463 YVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAA 522
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 281/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 107 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 167 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+E+ + A +AV
Sbjct: 227 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLYIKNLDD DD+
Sbjct: 287 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDD 346
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 347 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 406
Query: 381 AQRKEDRRARLQAQFAQ 397
AQRK+ RR L++Q AQ
Sbjct: 407 AQRKDVRRQALESQIAQ 423
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 134 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 193 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 251
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV +++ ESA+KA+++LN +N K++Y G K ER+
Sbjct: 252 FGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 311
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+Y+KNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 312 AELKKSHEEKRLENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 371
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 372 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 427
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + F+ G + S +V D + +S GY +V + N ++A+E
Sbjct: 49 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL +S + L +F +G I S
Sbjct: 109 LNYSLIKGQSCRI----MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 164
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER---ELEL 288
V D +GKS+ F FV++ + A A++A+NG +DK+ YVG K ER EL
Sbjct: 165 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 224
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ QF N+YIKN+D + D + + L PFG S + RD G+S+G
Sbjct: 225 RAQF-------------TNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGF 271
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV + E A +A+ E+N K V K LY AQ K +R A L+ + R
Sbjct: 272 GFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKR 322
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/442 (49%), Positives = 300/442 (67%), Gaps = 48/442 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ T+++ ++ F ++G +TS+ + RD +GK + FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK F +E YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DDE
Sbjct: 298 EDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+F+ FG ITS KVMRD
Sbjct: 358 KLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAEKKS 417
Query: 343 ----GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R+++L+A
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 399 RPVAMASTVA----PRMPMYPP 416
+ M A P+ M PP
Sbjct: 478 NQLRMQQAAAAAGMPQQYMQPP 499
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/405 (53%), Positives = 289/405 (71%), Gaps = 8/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLY+GDL +VT+S L++ F+ G V+S+RVCRD ++R SLGY YVNF +A R
Sbjct: 49 YSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 108
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS FGNILS
Sbjct: 109 ALDTMNFETIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILS 168
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +G S+GYGFV F+ EESAQ AIEK+NGMLL+ K+VYVG F + +R E+ +S
Sbjct: 169 CKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELGES 228
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
K+TNV+VKN E +E L K F +YG ITSAVVM D DGK K FGFV + + D A +
Sbjct: 229 GLKYTNVFVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQK 288
Query: 259 AVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV+ LN K + D + V +AQKKSER +LK ++E +E ++QG NLY+KN+D+
Sbjct: 289 AVDDLNEKTLEGTDLKLSVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEE 348
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+ DE L+ F+ FG+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KM+ SKPL
Sbjct: 349 LTDEGLRAHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPL 408
Query: 377 YVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMYPPG 417
YVALAQRKEDRRA+L +Q+ Q +R + V P+YP G
Sbjct: 409 YVALAQRKEDRRAQLASQYMQKLATLRMGQQTNGVPGMAPIYPQG 453
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/382 (56%), Positives = 289/382 (75%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 48 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAI 107
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 108 EELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 167
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 168 VATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 227
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + TEE+ +K F YG ITS + +D DGKSK FGFVNFE D A +AV
Sbjct: 228 NFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAV 287
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDSID E
Sbjct: 288 EELNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSE 347
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +MV +KPLYVAL
Sbjct: 348 KLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVAL 407
Query: 381 AQRKEDRRARLQAQFA---QMR 399
AQRK+ RR++L+ Q QMR
Sbjct: 408 AQRKDVRRSQLEQQIQARNQMR 429
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/457 (48%), Positives = 306/457 (66%), Gaps = 61/457 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD +RRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 180 VAQDESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ TEE+ ++ F ++G +TSA + RD + GKS+ FGFVNF N + AA A
Sbjct: 240 NFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD IDD
Sbjct: 300 VDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD-PS------------------------------------ 342
EKL++LF FGSITS KVMRD P+
Sbjct: 360 EKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGEAET 419
Query: 343 ------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
G S+G GFV F+ P+EA++A+ +MN +MV +KPLYVALAQRK+ R+++
Sbjct: 420 EEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVRKSQ 479
Query: 391 LQAQFAQMRPVAMASTVA----PRM----PM-YPPGA 418
L+A + M A P+ PM +PPGA
Sbjct: 480 LEASIQARNQIRMQQAAAQAGMPQQYMQAPMFFPPGA 516
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/384 (54%), Positives = 283/384 (73%), Gaps = 7/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NG++ + YVG+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALA E R+A L Q+ Q
Sbjct: 361 KPLYVALA---EGRKAILTNQYMQ 381
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 169/299 (56%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE+EL A + N+Y+KNL +D+++L+ LFS FG + S KVMRD
Sbjct: 176 RREREVEL----------GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SRG GFV F EEA +A++ MNG+ V + LYV AQ++ +R+ L+ +F QM+
Sbjct: 226 VSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMK 284
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/418 (50%), Positives = 291/418 (69%), Gaps = 47/418 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +N MLLN+K+VYVG+ + K++R ++ K+
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+S T+E+ + F +YG +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D IDD+
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+FS +G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 343 -------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+ +L+A
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEA 481
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 159/293 (54%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V +++ +KA+
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 124 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 179
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + AA+A++ +N ++K+ YVG K +R+
Sbjct: 180 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFE 239
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ DE+ + LF+ +G +TS + RD G SR
Sbjct: 240 EMKANF-------------TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSR 286
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E A++A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 287 GFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAAR 339
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 62/238 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ TD + DLF + G V S + RD S +S G+G+VNF+ + AA+A+E
Sbjct: 246 TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTHECAAKAVE 304
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRKS N++IKNL ID
Sbjct: 305 ELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDK 364
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L FS +G I S KV D
Sbjct: 365 LRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEK 424
Query: 149 ------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++ K +YV RK R ++ S
Sbjct: 425 KGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEAS 482
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/377 (54%), Positives = 278/377 (73%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 56 SASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 115
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD ID+KALHDTF+AFGNILSCK
Sbjct: 116 EHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCK 175
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKS 200
VATD NG S+G+ FV ++ E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 176 VATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRA 235
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+++KNL T++DL+ F +G I SA + DG SK F FVN+ D A +AV
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAV 295
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ YVG+AQK++ER+ EL+ E+ E K G NLY+KN+DD DD+
Sbjct: 296 DELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDD 355
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F G+ITS KVMRD G SRG GFV FS P+EA+RA+ EMNGKM+ +KPLYV+L
Sbjct: 356 RLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSL 415
Query: 381 AQRKEDRRARLQAQFAQ 397
AQ+KE RR L++Q Q
Sbjct: 416 AQKKEVRRQALESQMQQ 432
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 152/288 (52%), Gaps = 15/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + F+ G + S +V D + +S GY +V + N ++A+E
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ ++ + +RD + K+ N+++KNL + + L +F +G I S
Sbjct: 118 LNYSLIKNRPCRI----MWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILS 173
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D +G S+ F FV++E + A A++++NG +DK+ YVG K ER+ +++ Q
Sbjct: 174 CKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQ 233
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KF N++IKNL+ + L+ +F PFG I S + G+S+G FV
Sbjct: 234 RA--------KF--TNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFV 283
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++T + A +A+ E+N K + K LYV AQ++ +R L+ + R
Sbjct: 284 NYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERR 331
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/377 (54%), Positives = 278/377 (73%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 56 SASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 115
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + +P R+M+S RDP+LRK+G GNIFIKNLD ID+KALHDTF+AFGNILSCK
Sbjct: 116 EHLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILSCK 175
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKS 200
VATD NG S+G+ FV ++ E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 176 VATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQRA 235
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+++KNL T++DL+ F +G I SA + DG SK F FVN+ D A +AV
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAV 295
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ YVG+AQK++ER+ EL+ E+ E K G NLY+KN+DD DD+
Sbjct: 296 DELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDD 355
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F G+ITS KVMRD G SRG GFV FS P+EA+RA+ EMNGKM+ +KPLYV+L
Sbjct: 356 RLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSL 415
Query: 381 AQRKEDRRARLQAQFAQ 397
AQ+KE RR L++Q Q
Sbjct: 416 AQKKEVRRQALESQMQQ 432
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 152/288 (52%), Gaps = 15/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + F+ G + S +V D + +S GY +V + N ++A+E
Sbjct: 58 SLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ ++ + +RD + K+ N+++KNL + + L +F +G I S
Sbjct: 118 LNYSLIKNRPCRI----MWSQRDPALRKTGQGNIFIKNLDDKIDNKALHDTFAAFGNILS 173
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D +G S+ F FV++E + A A++++NG +DK+ YVG K ER+ +++ Q
Sbjct: 174 CKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQ 233
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KF N++IKNL+ + L+ +F PFG I S + G+S+G FV
Sbjct: 234 RA--------KF--TNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFV 283
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++T + A +A+ E+N K + K LYV AQ++ +R L+ + R
Sbjct: 284 NYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERR 331
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/382 (53%), Positives = 289/382 (75%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + A+
Sbjct: 41 SASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAI 100
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+ P+ G P R+M+S RDPS+RK G+GNIFIKNL ID+KALHDTFS FGNILSCK
Sbjct: 101 EKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCK 160
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+ATD G S+G+GFV F+++E+A++AI+ +NGMLLN ++VYV + K++R ++++++K
Sbjct: 161 IATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKA 220
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ T +E+ ++ F + G ITSA + +D +GK + FGFVN+EN +DAA+AV
Sbjct: 221 NFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAV 280
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN F + +VG+AQKK ER ELK Q+E E +K+QG NL++KNLDD+IDD+
Sbjct: 281 EELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDTIDDQ 340
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+
Sbjct: 341 KLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 400
Query: 381 AQRKEDRRARLQAQFA---QMR 399
AQRK+ RR++L Q QMR
Sbjct: 401 AQRKDVRRSQLAQQIQARNQMR 422
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/477 (46%), Positives = 306/477 (64%), Gaps = 69/477 (14%)
Query: 10 NVNGGGANANQFGTT------------SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR 57
NV G +A+ G T SLYVG+LE VT++ L++LF+ +G V S+RVCR
Sbjct: 35 NVEGAQGDADTAGPTPNSAVPQPQASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCR 94
Query: 58 DLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK 117
D TRRSLGY YVN++ + +ALE LN+T +NG+P R+M+S RDP+LRK+G GN+FIK
Sbjct: 95 DAVTRRSLGYAYVNYNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIK 154
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD AID+KALHDTF+AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLL
Sbjct: 155 NLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLL 214
Query: 178 NDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
N+K+VYVGH + K++R ++ K+ FTNVYVKN++ ++++ + F +YG +TS+ +
Sbjct: 215 NEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLA 274
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN 295
RD +GKS+ FGFVNF + A++AVE LNGK F ++ YVG+AQKK ERE EL+ +E
Sbjct: 275 RDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAA 334
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS------------- 342
+E A+K+QG NLYIKNL D +DDEKL+ +FS FG ITS KVMRD
Sbjct: 335 RQEKANKYQGVNLYIKNLSDDVDDEKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEET 394
Query: 343 ----------------------------------GISRGSGFVAFSTPEEASRALLEMNG 368
G S+G GFV FS PE+A++A+ +MN
Sbjct: 395 PAPEAEVKKEDSEADADSQEAADKKDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQ 454
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAP--------RMPMYPPG 417
+M+ +KPLYVALAQRK+ R+ +L+ + M S A + P+Y PG
Sbjct: 455 RMIDNKPLYVALAQRKDVRKNQLEQSIQARNQMRMQSAAAQAGMPNQFMQQPVYFPG 511
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/412 (53%), Positives = 287/412 (69%), Gaps = 43/412 (10%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL A++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK---------- 167
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
KN E T++ L++ F +YGTITS VM DGKS+ FGFV F
Sbjct: 168 -----------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAF 210
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E ++QG NLY
Sbjct: 211 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVNLY 270
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSI+DE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 271 VKNLDDSINDERLRREFAPFGTITSAKVMME-DGRSKGFGFVCFSAPEEATKAVTEMNGR 329
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMYPPG 417
++V+KPLYVALAQRKEDR+A L +Q+ Q MR M M+PPG
Sbjct: 330 IIVTKPLYVALAQRKEDRKAHLASQYMQRLANMRMQQMGQ-------MFPPG 374
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 297/424 (70%), Gaps = 14/424 (3%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNPTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ K+TNVYVKN + +E L+K F +YGTITS VM DGKSK F
Sbjct: 196 QPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F ++A AV+ALN + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+S+DDE LK+ F FG+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP----PGAW 419
EMN KMV SKPLYVALAQRKEDRRA+L +Q+ Q T P +YP PG
Sbjct: 375 TEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPGGGLYPQQPQPGPG 434
Query: 420 IWLS 423
+++
Sbjct: 435 YYVA 438
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/388 (56%), Positives = 286/388 (73%), Gaps = 10/388 (2%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLN-----FTPLNGKPIRVM-YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ + F GK ++ +S RDPSLRKSG GN+FIKNLDK+ID+KAL+DT
Sbjct: 65 GEYGNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDT 124
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++
Sbjct: 125 FSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRR 183
Query: 192 ERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
ER+ E+ K+K FTNVY+KN E +E L+++F +YG S VM D GKSK FGFV+
Sbjct: 184 EREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVS 243
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
FE +DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLY
Sbjct: 244 FERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLY 303
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG+
Sbjct: 304 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGR 362
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+V SKPLYVALAQRKE+R+A L Q+ Q
Sbjct: 363 IVGSKPLYVALAQRKEERKAHLTNQYMQ 390
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 170/293 (58%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 103 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 160
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L +TFS +
Sbjct: 161 IEKMNGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKY 220
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A KA++ +NG +N K ++VG +K ER
Sbjct: 221 GKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQA 280
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + +G+SK
Sbjct: 281 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSK 339
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 340 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 392
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 166/296 (56%), Gaps = 26/296 (8%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F Q+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF------QQPADG 65
Query: 172 LNGMLLNDKQVYVGH--------FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
G LL D+ H L ERD + KS NV++KNL +S + L +F
Sbjct: 66 EYGNLLFDRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 125
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + E
Sbjct: 126 SAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRRE 184
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+YIKN + +DDE+LK+ FS +G S KVM DPSG
Sbjct: 185 REAEL----------GAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSG 234
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
S+G GFV+F E+A++A+ +MNGK V K ++V AQ+K +R+A L+ +F Q++
Sbjct: 235 KSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLK 290
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/383 (54%), Positives = 278/383 (72%), Gaps = 8/383 (2%)
Query: 47 MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL 106
+G V S+RVCRD TRRSLGY YVNF NA + RALE LN+TP+ GKP R+M+S RDP+L
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166
RK+ GNIFIKNLD++ID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ E+A+
Sbjct: 62 RKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAE 121
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFG 224
AI+ +NGMLLNDK VYVGH + ++ER +I+ +S +TN+YVK L+ +E + + F
Sbjct: 122 AAIQAVNGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFA 181
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+YG +TSAV+ D DGKSK FGFVNF + + AA+A+ L+ + + YV +AQKK ER
Sbjct: 182 KYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGER 241
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E ELK +EQ + + K+QG NLY+KNL+D +D+EK+ F+ FG+ITS K+MRD G
Sbjct: 242 EEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGA 301
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV--- 401
S+G GFV FS+P+EA++A+ E+NGKM KPLYV+LAQRK+ R+ +L+AQ AQ +
Sbjct: 302 SKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQRNQIRSQ 361
Query: 402 -AMASTVAPRMPMY--PPGAWIW 421
AS + P MP Y PP +
Sbjct: 362 QLAASGIPPNMPPYGMPPNQMYY 384
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 19/191 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV L +++++ +LF + GQV S + D +S G+G+VNF++ + AA+AL
Sbjct: 160 TNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVD-QDGKSKGFGFVNFADHEAAAKALT 218
Query: 84 MLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHK 126
L+ + G+ + V + + D SL+ G N+++KNL+ +D +
Sbjct: 219 ELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGV-NLYVKNLEDDMDEE 277
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
+ F+AFG I S K+ D G SKG+GFV F + + A KA+ +LNG + K +YV
Sbjct: 278 KVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSL 337
Query: 187 FLRKQERDTEI 197
RK R ++
Sbjct: 338 AQRKDVRKQQL 348
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/413 (53%), Positives = 292/413 (70%), Gaps = 10/413 (2%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNQTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D +G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ +FTNVYVKN + +E L+K F ++G ITS VM +GKSK F
Sbjct: 196 QPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F N ++A AV+AL+ + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+++DD+ LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
EMN KMV SKPLYVA+AQRKEDRRA+L +Q+ Q P MY P
Sbjct: 375 TEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNP 427
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/439 (49%), Positives = 290/439 (66%), Gaps = 59/439 (13%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++
Sbjct: 35 GDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 94
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 95 NTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFA 154
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R
Sbjct: 155 AFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 214
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ K+ FTN+Y+KN+ T+++ + F +G ITSA + D DGKS+ FGFVN+
Sbjct: 215 QSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYA 274
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N + A AV +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+K
Sbjct: 275 NHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 334
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVM-----RDPS------------------------ 342
NL D IDDEKL+ LF+P+G+ITS KVM R P+
Sbjct: 335 NLTDDIDDEKLRDLFTPYGTITSAKVMRDAAERSPTPEAEDKETKGSEEKEVKTEETAEV 394
Query: 343 ----------------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
G S+G GFV FS+P+EAS+A+ EMN +MV +K
Sbjct: 395 KTEETTEEKKTEEQGEASEEKKAEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNAK 454
Query: 375 PLYVALAQRKEDRRARLQA 393
PLYVALAQRK+ RR++L+A
Sbjct: 455 PLYVALAQRKDVRRSQLEA 473
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 164/314 (52%), Gaps = 22/314 (7%)
Query: 91 NGKPIRVMY-SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LN 148
NG P+ + D + + + ++++ LD ++ L++ FS+ G + S +V D +
Sbjct: 23 NGAPVEATSEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 82
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208
+S GY +V ++N ++A+E LN L+ K + +RD + K+ NV++K
Sbjct: 83 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIK 138
Query: 209 NLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
NL + + L +F +G I S V +D SK +GFV++E ++ A A++ +NG
Sbjct: 139 NLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Query: 269 DDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+DK+ +VG K +R+ E+K F N+YIKN+D I D++ + +
Sbjct: 199 NDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDLEITDDEFRVM 245
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F FG ITS + D G SRG GFV ++ E A A+ EMN K V ++ LYV AQ+K
Sbjct: 246 FEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKH 305
Query: 386 DRRARLQAQFAQMR 399
+R L+ Q+ R
Sbjct: 306 EREEELRKQYEAAR 319
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 423 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKDVRRSQLEAS 474
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/391 (54%), Positives = 287/391 (73%), Gaps = 8/391 (2%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG N + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVN+
Sbjct: 56 GGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYH 112
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +A++ LN++ + G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS
Sbjct: 113 KFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFS 172
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG ILSCKVATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R
Sbjct: 173 AFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDR 232
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+++ K+ +TN+YVKN+ TE++ ++ F YG ITS + +D DGKSK FGFVN+E
Sbjct: 233 ESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYE 292
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
A AVEALN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IK
Sbjct: 293 EHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIK 352
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD ID EKL++ F PFG+ITS KVM D +G S+G GFV FSTPEEA++A+ EMN +M+
Sbjct: 353 NLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMI 412
Query: 372 VSKPLYVALAQRKEDRRARLQAQFA---QMR 399
KPLYVALAQRK+ RR++L+ Q QMR
Sbjct: 413 NGKPLYVALAQRKDVRRSQLEQQIQARNQMR 443
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/391 (54%), Positives = 288/391 (73%), Gaps = 11/391 (2%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ F SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPIFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ AI +NGMLLND++V+VGHF +QER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEY-----GTITSAVVMRDGDGKSKCFGFV 248
E+ +FTN+YVKNL E LQ+ F ++ G + S VMRD G S+ FGFV
Sbjct: 182 ELGARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFV 241
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF--QGA 306
NFE ++A +AV +NGK+ + YVG+AQK+ ER+ ELK +FEQ ++ +++ +G
Sbjct: 242 NFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGV 301
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLY+KNLDDSI+DEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EM
Sbjct: 302 NLYVKNLDDSINDEKLRKEFSPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEM 360
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
NG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 NGRIVGTKPLYVALAQRKEERKAILTNQYMQ 391
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 165/302 (54%), Gaps = 32/302 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +LE ++ + LYD F+ G ++S +V C D +R G+G+V+F + A
Sbjct: 97 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR---GFGFVHFETHEAAQL 153
Query: 81 ALEMLNFTPLNGKPIRVMY----SHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSA 134
A+ +N LN + + V + R+ L R NI++KNL +D L + FS
Sbjct: 154 AISTMNGMLLNDRKVFVGHFKSRQEREAELGARAMEFTNIYVKNLQVDMDEWGLQELFSQ 213
Query: 135 F-----GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
F G +LS KV D +G S+G+GFV F+ E AQKA+ +NG + + +YVG +
Sbjct: 214 FDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQK 273
Query: 190 KQERDTEINKSKF---------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
+ ER E+ K KF N+YVKNL +S +E L+K F YG ITSA V
Sbjct: 274 RMERQNEL-KRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFSPYGMITSAKV 332
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
M +G G SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q
Sbjct: 333 MTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 391
Query: 295 NM 296
+
Sbjct: 392 RL 393
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 164/293 (55%), Gaps = 21/293 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS N+++KNL +S + L +F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D G S+ FGFV+FE + A A+ +NG +D++ +VG + + ERE EL
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAEL--- 183
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF-----GSITSCKVMRDPSGISR 346
A + N+Y+KNL +D+ L++LFS F G + S KVMRD SG SR
Sbjct: 184 -------GARAMEFTNIYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSR 236
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F EEA +A+++MNGK V + LYV AQ++ +R+ L+ +F QM+
Sbjct: 237 GFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMK 289
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M + F A+LY+ +L + + L + FSP G I S +V RD + S G ++ F
Sbjct: 1 MNASGPIFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN +++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLR 94
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/438 (49%), Positives = 293/438 (66%), Gaps = 14/438 (3%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL ++ D QL F+++G V VCRD+++R+SLGYGYVNF + ++A RALE
Sbjct: 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+N+ + G+PIR+M+S RDPSLRKSG GNIFIKNL K I+ K L+DTFS FG ILSCK+
Sbjct: 62 QMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKI 121
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
A D NG SKGYGFV F+NEE A++AI+K+N M + K VYVG+F+ + +R ++ K KF
Sbjct: 122 AMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFN 181
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN T +E L++ F E+G I SA VM+D +GKSK FGFV + N + A AV A+
Sbjct: 182 NIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAM 241
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF-QGANLYIKNLDDSIDDEKL 322
+GK+ + Y +AQ+K ER+ ELK + E+ E K+ NLY+KNLDD IDDE+L
Sbjct: 242 HGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K++FS +G I+S KVM D + S+G GFV F+ PE+A++A+ E NG++ SKPLYVA+AQ
Sbjct: 302 KEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQ 361
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPM-----------YPPGAWIWLSAAACSWYE 431
RKEDRRA L A+ Q A+ ST P +P YP A ++ + +
Sbjct: 362 RKEDRRAELAAKHTQHL-NALRSTAPPMIPALMHPTQNYFHPYPQQARLYSAPGQLMQAQ 420
Query: 432 ARWGSHAKFLCADSSARA 449
RW + L AD S A
Sbjct: 421 PRWSRNGP-LAADLSQLA 437
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 157/292 (53%), Gaps = 18/292 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + +LYD F+ G+++S ++ D S GYG+V+F N + A RA
Sbjct: 88 GLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKIAMD-ENGNSKGYGFVHFENEECAKRA 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
++ +N + GK + V S R RK NI++KN D + L + F+ FG
Sbjct: 147 IQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGE 206
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S V D G+SKG+GFV + N E A+ A+ ++G + + +Y RK+ER E+
Sbjct: 207 IKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEEL 266
Query: 198 N----------KSKF---TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+SK+ N+YVKNL + +E L++ F +YG I+SA VM D + +SK
Sbjct: 267 KLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKG 326
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F N + A +AV NG+ K YV AQ+K +R EL + Q++
Sbjct: 327 FGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAELAAKHTQHL 378
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/376 (55%), Positives = 282/376 (75%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++T++ LYD F G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLR+SG GN+FIKNLD++ID+KAL+DTFS+FGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D+NG SKG+GFV ++++ESAQ+AIEK+NGML+ DK+V+V F + +R E + F
Sbjct: 123 CDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TN++VKNL +S + L K+F ++G + S V+ + G SKC GF++F+ D A AVE
Sbjct: 182 TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ K+ + K+ Y G+AQKK+ER ELK ++E+ +E ++QG NLY+KNLDDSIDDE
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F FG+ITS KV+ D +G S+G GFV FS+PEEA++A+ EMNG++ KPLYV LA
Sbjct: 302 LREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLA 361
Query: 382 QRKEDRRARLQAQFAQ 397
QRKEDR+A LQ Q+ Q
Sbjct: 362 QRKEDRKAHLQQQYMQ 377
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 169/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D++ S G+G+V++ + + A RA
Sbjct: 88 GQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRA 145
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N + K + V + R+ +R+ G N+F+KNL + D AL F F
Sbjct: 146 IEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQF 205
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G ++S KV D G SK +GF+ F + A+ A+E ++ + K++Y G +K ER
Sbjct: 206 GEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERS 265
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+E I + + N+YVKNL +S +E L+++F ++G ITSA V+ D +G+S
Sbjct: 266 SELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRS 325
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ F K YVG AQ+K +R+ L+ Q+ Q +
Sbjct: 326 KGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRV 379
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 162/290 (55%), Gaps = 17/290 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L+D F A G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + +S NV++KNL S + L +F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK FGFV++E+ + A RA+E +NG +DK+ +V + + +++R E
Sbjct: 118 SCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFG- 175
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSG 349
+AA F NL++KNL DS D + L + F FG + S KV+ D +G+S+ G
Sbjct: 176 -------DAAKHF--TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHG 226
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
F++F ++A A+ M+ K + K LY AQ+K +R + L+A++ +++
Sbjct: 227 FISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIK 276
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/427 (51%), Positives = 299/427 (70%), Gaps = 12/427 (2%)
Query: 2 AQVQAQGQNVNGG-----GANANQFGTTS--LYVGDLEANVTDSQLYDLFNQMGQVVSVR 54
A V Q NV+ G A++ Q TS LYVG+L +V ++ L+++F+ +GQV S+R
Sbjct: 21 APVAIQETNVSSGNEGEDAADSTQLPDTSASLYVGELNPSVNEASLFEIFSPVGQVSSIR 80
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNI 114
VCRD T++SLGY YVNF ++ +A++ LN++ ++G+P R+M+S RDPSLR++G GNI
Sbjct: 81 VCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLRRNGEGNI 140
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
FIKNL AID+KALHDTFSAFG ILSCKVATD G SK +GFV ++ E+A+ AIE +NG
Sbjct: 141 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNG 200
Query: 175 MLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
MLLND++VYVG + K++R+++ K+ FTNVYVKN+ +EE+++ F YG ITS
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSL 260
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ +D +GKSK FGFVNFE+ + A +AVE LN K + + YVG+AQKK ER ELK Q+
Sbjct: 261 HLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQY 320
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
E E K+QG NL++KNLDDSID KL++ F PFG+ITS +VM D G S+G GFV
Sbjct: 321 ETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVC 380
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMRPVAMASTVAP 409
FS+PEEA++A+ EMN +M KPLYVALAQRK+ RR++L+ Q QMR A+T
Sbjct: 381 FSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGI 440
Query: 410 RMPMYPP 416
PP
Sbjct: 441 PGQFIPP 447
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/447 (49%), Positives = 302/447 (67%), Gaps = 53/447 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 59 SASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+S TE+D ++ F +YG +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+FS FG ITS KVMRD
Sbjct: 359 KLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEETKEGEEGAEKK 418
Query: 343 ---------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +MV +KPLYVALAQRK+ R+++L+A
Sbjct: 419 AEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRKSQLEA 478
Query: 394 QFAQMRPVAMASTVA----PRMPMYPP 416
+ M A P+ M PP
Sbjct: 479 SIQARNQLRMQQAAAAAGMPQQYMQPP 505
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/413 (55%), Positives = 292/413 (70%), Gaps = 10/413 (2%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNPTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ KFTNVYVKN E ++ L+K F +YGTITS VM +GKSK F
Sbjct: 196 QPRAQRNRELGETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTS-EGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F ++A AV+ALN + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+S+DDE LK+ F FG+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
EMN KMV SKPLYVALAQRKEDRRA+L +Q+ Q T P MY P
Sbjct: 375 SEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPGGGMYSP 427
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/413 (53%), Positives = 291/413 (70%), Gaps = 10/413 (2%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNQTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKS 135
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
++DTFS FGNILSCKVA D +G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F
Sbjct: 136 IYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKF 195
Query: 188 LRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ +R+ E+ ++ +FTNVYVKN + +E L+K F ++G ITS VM +GKSK F
Sbjct: 196 QPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTV-EGKSKGF 254
Query: 246 GFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
GFV F N ++A AV+AL+ + D + +V +AQKKSER ELK + EQ+ E K+
Sbjct: 255 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKY 314
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NLY+KNLD+++DD+ LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+
Sbjct: 315 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 374
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
EMN KMV SKPLYVA+ QRKEDRRA+L +Q+ Q P MY P
Sbjct: 375 TEMNSKMVCSKPLYVAIGQRKEDRRAQLASQYMQRVASMRMHGNVPGAAMYNP 427
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/398 (53%), Positives = 284/398 (71%), Gaps = 4/398 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ LY++F+ +GQV S+RVCRD T++SLGY YVN+ ++ RAL
Sbjct: 50 SASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERAL 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ ++G+P R+M+S RDPSLR++G GNIFIKNL ID+KALHDTFSAFG ILSCK
Sbjct: 110 EQLNYSLIDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPDIDNKALHDTFSAFGRILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD +G+SK +GFV ++ E+A AIE +NGM LND++V+VG + K++R + K+
Sbjct: 170 VATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNV+VKN TE +L F YG ITS +D +GKSK FGF+NFEN D A +AV
Sbjct: 230 NFTNVFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDS+ E
Sbjct: 290 EELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L++ F PFG+ITS KVM D +G S+G GFV FS PEEA++A+ EMN +MV+ KPLYVAL
Sbjct: 350 MLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVAL 409
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPP 416
AQRK+ RR++L+ Q + M + A +P PP
Sbjct: 410 AQRKDVRRSQLEQQIQARNQMRMQNAAAAGIPGQFMPP 447
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/388 (55%), Positives = 280/388 (72%), Gaps = 32/388 (8%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK---------- 167
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
KN E T++ L++ F +YGTITS VM DGKS+ FGFV F
Sbjct: 168 -----------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAF 210
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY
Sbjct: 211 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLY 270
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 271 VKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGR 329
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQ 397
++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 330 IIVTKPLYVALAQRKEDRKAHLASQYMQ 357
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 171/323 (52%), Gaps = 56/323 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ +N LNGK KN + + L + F +G I S
Sbjct: 156 IDRVNGMLLNGK-----------------------KNFGEDMTDDKLKEMFEKYGTITSH 192
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEI--- 197
KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER E+
Sbjct: 193 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 252
Query: 198 ---------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+SK FGFV
Sbjct: 253 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 311
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + AN+
Sbjct: 312 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL---------ANM 362
Query: 309 YIKNLDDSIDDEKLKQLFSPFGS 331
+ +++ Q+F P G+
Sbjct: 363 RM---------QQMGQIFQPGGA 376
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 148/289 (51%), Gaps = 45/289 (15%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK-------------------- 167
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KN + + D+KLK++F +G+ITS KVM G SRG GFV
Sbjct: 168 -------------------KNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFV 208
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 209 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/389 (53%), Positives = 287/389 (73%), Gaps = 7/389 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ F SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGPGFPLASLYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A AL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNL+++ID+KAL+DTFS F
Sbjct: 63 ADAELALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLN+++V+V HF +QER+
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREA 181
Query: 196 E--INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E + +FTNVYVKNL E+ L++ F ++G S VMRD G S+ FGFVNFE
Sbjct: 182 ELGVRAMEFTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK---FQGANLYI 310
++A +AV +NGK+ + YVG+AQK +ER+ ELK +F+Q + D+ +QG NLY+
Sbjct: 242 EEAQKAVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYV 301
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNLDDSID+E+L++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG +
Sbjct: 302 KNLDDSIDNERLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGCI 360
Query: 371 VVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+ +KPLYVALAQRK++R+A L QF Q R
Sbjct: 361 LGTKPLYVALAQRKDERKAILTNQFMQQR 389
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/479 (48%), Positives = 300/479 (62%), Gaps = 64/479 (13%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N + Q + SLYVG+L+++VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN
Sbjct: 43 NSAAPSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 102
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDT
Sbjct: 103 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFV 248
+R ++ K+ FTNVYVKNL T E+ ++ FG+YG ITSA + D + GKS+ FGFV
Sbjct: 223 DRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFV 282
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF + AA AVE LN K+F ++ YVG+AQKK ERE EL+ Q E E A K+QG NL
Sbjct: 283 NFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNL 342
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSC--------------------------------- 335
Y+KNL D IDDEKL+ LF FG+ITS
Sbjct: 343 YVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKE 402
Query: 336 -------------------KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
K + G S+G GFV FS P+EAS+A+ EMN +MV KPL
Sbjct: 403 SAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPL 462
Query: 377 YVALAQRKEDRRARLQAQFA------QMRPVAMASTVAPRMP---MYPPGAWIWLSAAA 426
YVALAQRK+ R+++L+A Q + A A P M YPPG ++ A A
Sbjct: 463 YVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANA 521
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/388 (54%), Positives = 286/388 (73%), Gaps = 5/388 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N ++ + SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++
Sbjct: 28 NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHD 87
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
A A+E LNFTP+ GK R+M+S RDPSLRK GAGNIFIKNL ID+KAL+DTFS FG
Sbjct: 88 AAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG 147
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILS KVATD G+SKG+G+V F+ +ESA +AI+ LNGMLLN +++YVG L K+ER+++
Sbjct: 148 NILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK 207
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN++ TT+++ ++ ++G S V+ R +G++K FGFVNF N +
Sbjct: 208 FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHE 267
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA + VE LN +F + YV +AQKK ER+ ELK Q+E E K+QG NL+IKNLD
Sbjct: 268 DAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLD 327
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
DSIDD+KL++ F+P+G+ITS KVM +G S+G GFV FSTPEEA++A+ E N ++V K
Sbjct: 328 DSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 375 PLYVALAQRKEDRRARLQAQFA---QMR 399
PLYVA+AQRK+ RR++L Q QMR
Sbjct: 388 PLYVAIAQRKDVRRSQLAQQIQARNQMR 415
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGI 344
L L+ + E +E + A+LY+ +LD S+ + L +FSP G+++S +V RD +
Sbjct: 15 LSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKT 74
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
S G +V F+ + A A+ ++N + K + +QR R +
Sbjct: 75 SLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/376 (54%), Positives = 282/376 (75%), Gaps = 4/376 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++T++ LYD F G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLR+SG GN+FIKNLD++ID+KAL+DTFS+FGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D+NG SKG+GFV ++++ESAQ+AIEK+NGML+ DK+V+V F + +R E + F
Sbjct: 123 CDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TN++VKNL +S + L ++F ++G + S V+ + G SKC GF++F+ D A AVE
Sbjct: 182 TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ K+ + K+ Y G+AQKK+ER ELK ++E+ +E ++QG NLY+KNLDDSIDDE
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ F FG+ITS KV+ D +G S+G GFV FS+PEEA++A+ EMNG++ KPLYV LA
Sbjct: 302 LREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLA 361
Query: 382 QRKEDRRARLQAQFAQ 397
QRKEDR+A LQ Q+ Q
Sbjct: 362 QRKEDRKAHLQQQYMQ 377
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 170/294 (57%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D++ S G+G+V++ + + A RA
Sbjct: 88 GQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRA 145
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N + K + V + R+ +R+ G N+F+KNL + D AL + F F
Sbjct: 146 IEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQF 205
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G ++S KV D G SK +GF+ F + A+ A+E ++ + K++Y G +K ER
Sbjct: 206 GEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERS 265
Query: 195 TE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+E I + + N+YVKNL +S +E L+++F ++G ITSA V+ D +G+S
Sbjct: 266 SELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRS 325
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ F K YVG AQ+K +R+ L+ Q+ Q +
Sbjct: 326 KGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRV 379
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L+D F A G +LS +V D+ +S GY +V F A++A++
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + +S NV++KNL S + L +F +G I S
Sbjct: 63 MNFDVIKGKPIRIMW----SQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK FGFV++E+ + A RA+E +NG +DK+ +V + + +++R E
Sbjct: 119 CKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFG-- 175
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGF 350
+AA F NL++KNL DS D + L + F FG + S KV+ D +G+S+ GF
Sbjct: 176 ------DAAKHF--TNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGF 227
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++F ++A A+ M+ K + K LY AQ+K +R + L+A++ +++
Sbjct: 228 ISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIK 276
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/388 (55%), Positives = 279/388 (71%), Gaps = 32/388 (8%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL +++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+++NGMLLN K
Sbjct: 118 TFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK---------- 167
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250
KN E T++ L+ F +YGTITS VM DGKS+ FGFV F
Sbjct: 168 -----------------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAF 210
Query: 251 ENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
E+ D A +AV LNGK+ + K YVG+AQKK+ER+ ELK +FEQ E +++QG NLY
Sbjct: 211 EDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVNLY 270
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
+KNLDDSIDDE+L++ F+PFG+ITS KVM + G S+G GFV FS PEEA++A+ EMNG+
Sbjct: 271 VKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFVCFSAPEEATKAVTEMNGR 329
Query: 370 MVVSKPLYVALAQRKEDRRARLQAQFAQ 397
++V+KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 330 IIVTKPLYVALAQRKEDRKAHLASQYMQ 357
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 171/323 (52%), Gaps = 56/323 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ N+ + +YD F+ G ++S +V +D S S GYG+V+F + A ++
Sbjct: 97 GVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGV-SKGYGFVHFETEEAANKS 155
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++ +N LNGK KN + + L D F +G I S
Sbjct: 156 IDRVNGMLLNGK-----------------------KNFGEDMTDDKLKDMFEKYGTITSH 192
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEI--- 197
KV +G+S+G+GFV F++ ++A++A+ +LNG + + K +YVG +K ER E+
Sbjct: 193 KVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRK 252
Query: 198 ---------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
N+ + N+YVKNL +S +E L+K F +GTITSA VM + +G+SK FGFV
Sbjct: 253 FEQLKLERLNRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMME-EGRSKGFGFV 311
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F ++A +AV +NG+ K YV AQ+K +R+ L Q+ Q + AN+
Sbjct: 312 CFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQRL---------ANM 362
Query: 309 YIKNLDDSIDDEKLKQLFSPFGS 331
+ +++ Q+F P G+
Sbjct: 363 RM---------QQMGQIFQPGGA 376
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 147/289 (50%), Gaps = 45/289 (15%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 72 MNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K
Sbjct: 128 CKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK-------------------- 167
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KN + + D+KLK +F +G+ITS KVM G SRG GFV
Sbjct: 168 -------------------KNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFV 208
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF P+ A +A+LE+NGK V K +YV AQ+K +R+ L+ +F Q++
Sbjct: 209 AFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLK 257
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/417 (50%), Positives = 291/417 (69%), Gaps = 46/417 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 DELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 180 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T++D + F ++G +TS+ + RD + GKS+ FGFVNF + +DA++A
Sbjct: 240 NFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VE LN K+F + YVG+AQKK ERE EL+ +E +E A K+QG NLYIKNLDD +DD
Sbjct: 300 VEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMR--------DPS----------------------------- 342
+KL+QLFS FG ITS KVMR +P
Sbjct: 360 DKLRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKA 419
Query: 343 ------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV F P++A++A+ EMN +MV KPLYVALAQRK+ R+ +L+A
Sbjct: 420 DKKPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQLEA 476
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 157/292 (53%), Gaps = 22/292 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+++
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALDE 121
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ NV++KNL + + L +F +G I S
Sbjct: 122 LNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+ E+
Sbjct: 178 CKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEM 237
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRG 347
K F N+Y+KN+ + D+ + LF FG +TS + RD +G SRG
Sbjct: 238 KANF-------------TNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRG 284
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F++ E+AS+A+ E+N K + LYV AQ+K +R L+ + R
Sbjct: 285 FGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAAR 336
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 108/236 (45%), Gaps = 59/236 (25%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ +VTD LF + G V S + RD T +S G+G+VNF++ ++A++A+E
Sbjct: 242 TNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVE 301
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN +G+ + R H R+ LR+S N++IKNLD +D
Sbjct: 302 ELNEKEFHGQNLYVGRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDK 361
Query: 128 LHDTFSAFGNILSCKV----------------ATDLN----------------------- 148
L FS FG I S KV A D
Sbjct: 362 LRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKADK 421
Query: 149 ----GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++N K +YV RK R ++ S
Sbjct: 422 KPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQLEAS 477
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/398 (53%), Positives = 291/398 (73%), Gaps = 4/398 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 50 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 110 EELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 170 VAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + +EE +K F YG ITS + +D DGKSK FGFVNFEN D A +AV
Sbjct: 230 NFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDD+ID E
Sbjct: 290 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F FG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 350 KLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 409
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPP 416
AQRK+ RR++L+ Q + M + A +P PP
Sbjct: 410 AQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFMPP 447
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/473 (48%), Positives = 300/473 (63%), Gaps = 66/473 (13%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKNL T E+ ++ F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSG--------------------------------- 343
IDDEKL+ LF FG+ITS +VMRD G
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDS 409
Query: 344 -------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ + GF V FS P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 383 RKEDRRARLQAQFA------QMRPVAMASTVAPRMP---MYPPGAWIWLSAAA 426
RK+ R+++L+A Q + A A P M YPPG ++ A A
Sbjct: 470 RKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANA 522
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KNL+ + +E+ ++LF +G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D +G SRG GFV F + A+ A+ ++N K + LYV AQ+K +R L+ Q
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 328
Query: 399 R 399
R
Sbjct: 329 R 329
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/433 (49%), Positives = 303/433 (69%), Gaps = 24/433 (5%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
+G + N + SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVN
Sbjct: 59 SGVPVSQNNSNSASLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYVN 118
Query: 72 FSNAQEA-----ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
F N+ + RAL+ LN+T + GKP R+M+S RDPSLRK+G GN+FIKNLD +ID+K
Sbjct: 119 FHNSSDVNLLTGERALDELNYTLIKGKPCRIMWSQRDPSLRKTGTGNVFIKNLDASIDNK 178
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
ALHDTF+AFG+ILSCKVA D G SKGYGFV + ESA+ AI K VYVGH
Sbjct: 179 ALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAI----------KHVYVGH 228
Query: 187 FLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+ K++R ++ + K KFTNVYVKN+ +E + ++ F ++G +TS + D +GKS+
Sbjct: 229 HVSKKDRQSKFDDMKLKFTNVYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRG 288
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+EN +DAARAVE L+ ++ D++ YV +AQKK ERE EL+ Q+EQ + +K+
Sbjct: 289 FGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYN 348
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDD IDDE+L+Q FS +G+ITS K+M D +G S+G GFV FS+P+EA++A+
Sbjct: 349 GINLFVKNLDDDIDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAIT 408
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQF-----AQMRPVAMASTVAPRMPMYPPGAW 419
EMN +MV KPLYVALAQRK+ RR++L++Q +++ A A+ ++P+ M PGA
Sbjct: 409 EMNQRMVSGKPLYVALAQRKDVRRSQLESQINARNQLRIQQQAAAAGMSPQYGM--PGAP 466
Query: 420 IWLSAAACSWYEA 432
++ + A
Sbjct: 467 MFYGQGPTGFMPA 479
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/431 (49%), Positives = 293/431 (67%), Gaps = 53/431 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++
Sbjct: 40 APAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAF 159
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER +
Sbjct: 160 GNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMS 219
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ ++ED + F ++G ITSA + RD GKS+ FGFVN+
Sbjct: 220 KFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKH 279
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL
Sbjct: 280 EAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNL 339
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--PS----------------------------- 342
+D +DDEKL+ +F+PFG+ITS KVMRD P+
Sbjct: 340 NDDVDDEKLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEEAKDESKEDS 399
Query: 343 --------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G S+G GFV FS P+EA++A+ EMN KM+ +KPLYVALAQ
Sbjct: 400 DDKKDEKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQ 459
Query: 383 RKEDRRARLQA 393
RK+ R+ +L+A
Sbjct: 460 RKDVRKNQLEA 470
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + DE + LF G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV + E AS A+ +N + LYV AQ+K +R L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/403 (56%), Positives = 288/403 (71%), Gaps = 10/403 (2%)
Query: 21 FGTT-SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
FG++ S+YVG+LEA+VT+ QL DLF+Q VVSVR+C D T RSLGY YVNF + ++A
Sbjct: 27 FGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAK 86
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
ALE NFT +NGK IRVM+S+RDP+LR+SGA N+FIKNL+ I K+LH FS FG IL
Sbjct: 87 VALEYFNFTVVNGKSIRVMFSNRDPTLRRSGAANLFIKNLEPNIVAKSLHQMFSRFGIIL 146
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND--KQVYVGHFLRKQERDTEI 197
SCKVATDLNG+SKGYGFVQF +EESA+ A+ LNG L N KQ+YV F+R++ER
Sbjct: 147 SCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQHIG 206
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
SKFTNVY KNL + T++DL + F +GTITSAVVM+DGDG+SKCFGFVN+E ++ A
Sbjct: 207 GASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAE 266
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AVE LNGK D YVG+A++K ER+ ELK +F++ + K +G NLY+KNLD SI
Sbjct: 267 EAVEKLNGKIISDVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGCNLYLKNLDCSI 326
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVSKPL 376
DDE L+ LF F I +CKVM D G S+G GFV F+T E A++A+ N K+V +K L
Sbjct: 327 DDEYLRNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLL 386
Query: 377 YVALAQRKEDRRARLQAQFAQ-----MRPVAMASTVAPRMPMY 414
YV +AQRKE+R A L AQFA+ R AM +APR P Y
Sbjct: 387 YVCVAQRKEERSAILAAQFARRHMVGARTPAMPQNIAPR-PFY 428
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/479 (47%), Positives = 299/479 (62%), Gaps = 64/479 (13%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N + Q + SLYVG+L+++VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN
Sbjct: 43 NSAAPSTTQPHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 102
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDT
Sbjct: 103 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFV 248
+R ++ K+ FTNVYVKNL T E+ ++ FG+YG ITSA + D + GKS+ FGFV
Sbjct: 223 DRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFV 282
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF + AA AVE LN K+F ++ YVG+AQKK ERE EL+ Q E E A K+QG NL
Sbjct: 283 NFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNL 342
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSC--------------------------------- 335
Y+KNL D IDDEKL+ LF FG+ITS
Sbjct: 343 YVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKE 402
Query: 336 -------------------KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
K + G S+G GFV FS P+EAS+A+ EMN +MV KPL
Sbjct: 403 SAEEESSDKSDKAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPL 462
Query: 377 YVALAQRKEDRRARLQAQFA------QMRPVAMASTVAPRMP---MYPPGAWIWLSAAA 426
YVALAQRK+ R+++L+A Q + A A P M YPPG ++ A
Sbjct: 463 YVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPTNA 521
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/399 (53%), Positives = 291/399 (72%), Gaps = 5/399 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS FG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ +EEDL+K F YG ITS + +D +GKSK FGFVN+E + A +AV
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 381 AQRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYPP 416
AQRK+ RR++L+ Q QMR A+T PP
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPP 449
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/473 (48%), Positives = 300/473 (63%), Gaps = 66/473 (13%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKNL T E+ ++ F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSG--------------------------------- 343
IDDEKL+ LF FG+ITS +VMRD G
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDS 409
Query: 344 -------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ + GF V FS P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 410 AEKTDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQ 469
Query: 383 RKEDRRARLQAQFA------QMRPVAMASTVAPRMP---MYPPGAWIWLSAAA 426
RK+ R+++L+A Q + A A P M YPPG ++ A A
Sbjct: 470 RKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANA 522
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KNL+ + +E+ ++LF +G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D +G SRG GFV F + A+ A+ ++N K + LYV AQ+K +R L+ Q
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 328
Query: 399 R 399
R
Sbjct: 329 R 329
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/398 (53%), Positives = 292/398 (73%), Gaps = 4/398 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+ P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + +EE +K F +G ITS + +D DGKSK FGFVNFE+ + A +AV
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPP 416
AQRK+ RR++L+ Q + M + A +P PP
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIPP 448
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/480 (47%), Positives = 302/480 (62%), Gaps = 64/480 (13%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
N G + Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN
Sbjct: 43 NSAGPSTTQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVN 102
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDT
Sbjct: 103 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 162
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
F+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+
Sbjct: 163 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 222
Query: 192 ERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFV 248
+R ++ K+ FTNVYVKNL + E+ ++ F +YG ITSA + RDG+ GKS+ FGF
Sbjct: 223 DRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFF 282
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
F + AA AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NL
Sbjct: 283 YFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNL 342
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG------------------------- 343
Y+KNL D IDDEKL+ LF FG+ITS +VMRD +G
Sbjct: 343 YVKNLTDDIDDEKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKE 402
Query: 344 -------------------------ISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPL 376
+ + GF V FS P+EAS+A+ EMN +MV KPL
Sbjct: 403 SGEEDSADKSDKVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPL 462
Query: 377 YVALAQRKEDRRARLQAQFA------QMRPVAMASTVAPRMP---MYPPGAWIWLSAAAC 427
YVALAQRK+ R+++L+A Q + A A P M YPPG ++ A A
Sbjct: 463 YVALAQRKDVRKSQLEASIQARNTIRQQQVAAAAGMSQPFMQPAVYYPPGQQGFIPANAA 522
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/411 (53%), Positives = 297/411 (72%), Gaps = 10/411 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA---QE 77
+SLYVGDLE +VT++QL++LF+ +G V S+RVCRD TRRSLGY YVN+++A Q
Sbjct: 20 LANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQA 79
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RA+E LN+ +NGKP+R+M+SHRDPS RKSG GNIFIKNLDK ID KALHDTFSAFG
Sbjct: 80 ADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFSAFGK 139
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVATD NG SKGYGFV F+++ +A +AI+ +N + K VYV F ++ +R
Sbjct: 140 ILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADRPRA- 198
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
++ +TNV+VKNL +++L K E+G ITSAVVM+D G SK FGF+NF++++ AA
Sbjct: 199 -RTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAA 257
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL-DDS 316
+ VE LN ++ K Y G+AQKK+ERE L+ + E++ +E K+Q NLY+KNL D+
Sbjct: 258 KCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEE 317
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR-ALLEMNGKMVVSKP 375
+DD+ L++LF+ G+ITSCKVM+D SG S+G GFV F++ +EA+R + EMNGKMV KP
Sbjct: 318 VDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMVKGKP 377
Query: 376 LYVALAQRKEDRRA-RLQAQF-AQMRPVAMASTVAPRMPMYP-PGAWIWLS 423
LYVALAQRK+ RRA +L+A A+M AM+ P M P PGA + +
Sbjct: 378 LYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAGMSPYPGAMPFFA 428
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAF 353
+ A+ ++LY+ +L+ + + +L +LFS G + S +V RD ++R G +V +
Sbjct: 14 QPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRD--AVTRRSLGYAYVNY 71
Query: 354 ST---PEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
++ P+ A RA+ +N +V KP+ + + R R
Sbjct: 72 NSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSAR 109
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/405 (52%), Positives = 287/405 (70%), Gaps = 8/405 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLY+GDL +V+++ L++ F+ G V+S+RVCRD ++R SLGY YVNF +A R
Sbjct: 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 113
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS FGNILS
Sbjct: 114 ALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G SKGYGFV F+ E SAQ AIEK+NGMLL+DK+VYVG F + +R E+ +S
Sbjct: 174 CKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGES 233
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
K+TNV+VKN E +E L F ++G ITSAVVM D GK K FGFV F + D A +
Sbjct: 234 GLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQ 293
Query: 259 AVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AVE LN + D + V +AQKKSER ELK ++E +E ++QG NLY+KN+++
Sbjct: 294 AVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEED 353
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
++D+ L+ FS FG+ITS KVM D +G S+G GFV F PEEA+ A+ +MN KM+ +KPL
Sbjct: 354 LNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPL 413
Query: 377 YVALAQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMYPPG 417
YVALAQRKEDRRA+L +Q+ Q +R AS V +Y PG
Sbjct: 414 YVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPG 458
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/450 (49%), Positives = 303/450 (67%), Gaps = 55/450 (12%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+++VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 61 SASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKAL 120
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 121 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 180
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 181 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 240
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T+E+ ++ F ++G +TSA + RD D KS+ FGFVNF N + AA+A
Sbjct: 241 NFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKA 300
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+KNLDD +DD
Sbjct: 301 VDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDD 360
Query: 320 EKLKQLFSPFGSITSCKVMRDPS------------------------------------- 342
+KL++LF+PFGSITS KVMRD
Sbjct: 361 DKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKPK 420
Query: 343 ------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396
G S+G GFV F+ PEEAS+A+ +MN +MV +KPLYVALAQRK+ R+ +L+A
Sbjct: 421 SEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQLEASIQ 480
Query: 397 QMRPVAMASTVAP--------RMPM-YPPG 417
+ M A + PM YPPG
Sbjct: 481 ARNQIRMQQAAAAAGMPQQFMQTPMFYPPG 510
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 270/373 (72%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VTD QL+D F+ + SVR+CRD ST RSL YGYVNF + Q+A A+E+
Sbjct: 15 SLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEV 74
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + LNG+ IRVM+S RD RKSG GN+F+KNL +I+ L + F FGN+LS KVA
Sbjct: 75 MNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVA 134
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
T +G+SKGYGFVQF++EESA AIE LNG + DKQ+YVG F+RK +R K+TN
Sbjct: 135 TSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTN 194
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YVKNL EE LQ+ F E+G I+S ++ RD +G S+ FGF+NFENSDDA RA+E LN
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLN 254
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + K Y+ +AQKK+ERE L+ +E+ KE K++G+N+Y+KN+DD + DE+L++
Sbjct: 255 GSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDEELRE 314
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS FG+ITS K+MRD GI++G GFV FS P+EA RA+ + G M KPLY+A+AQRK
Sbjct: 315 RFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRK 374
Query: 385 EDRRARLQAQFAQ 397
EDR+ +L+ QFAQ
Sbjct: 375 EDRQMQLKLQFAQ 387
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +++YV +++ +VTD +L + F+Q G + S ++ RD + G+G+V FSN EA
Sbjct: 292 KYKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRD-DKGINKGFGFVCFSNPDEAK 350
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
RA+ L +GKP+ + + R
Sbjct: 351 RAVNTLQGCMFHGKPLYLAIAQR 373
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/447 (48%), Positives = 293/447 (65%), Gaps = 55/447 (12%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
+A QA+ NQ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD
Sbjct: 26 VAAAQAEAPTPTSAAPAHNQ-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAV 84
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++++++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD
Sbjct: 85 TRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLD 144
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
AID+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K
Sbjct: 145 HAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Query: 181 QVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+V+VGH + K+ER ++ K+ FTN+YVKN+ ++E+ ++ F ++G ITSA + RD
Sbjct: 205 KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDE 264
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
GKS+ FGFVN+ + A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E
Sbjct: 265 QGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLE 324
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR------------ 346
K+QG NLYIKNL+D +DDEKL+ +F+PFG+ITS KVMRD R
Sbjct: 325 KQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEA 384
Query: 347 ----------------------------------------GSGFVAFSTPEEASRALLEM 366
G GFV FS P+EA++A+ EM
Sbjct: 385 KEESEKTEESNEGADDKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEM 444
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQA 393
N KM+ KPLYVALAQRK+ R+ +L+A
Sbjct: 445 NQKMIEGKPLYVALAQRKDVRKNQLEA 471
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + DE+ ++LF G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFG 272
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV + E AS A+ +N + LYV AQ+K +R L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/432 (49%), Positives = 289/432 (66%), Gaps = 54/432 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++
Sbjct: 40 APAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAF 159
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER +
Sbjct: 160 GNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMS 219
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ ++E+ ++ F ++G ITSA + RD GKS+ FGFVN+
Sbjct: 220 KFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKH 279
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL
Sbjct: 280 EAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNL 339
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR--------------------------- 346
+D +DDEKL+ +F+PFG+ITS KVMRD R
Sbjct: 340 NDDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGAD 399
Query: 347 -------------------------GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
G GFV FS P+EA++A+ EMN KM+ KPLYVALA
Sbjct: 400 DKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALA 459
Query: 382 QRKEDRRARLQA 393
QRK+ R+ +L+A
Sbjct: 460 QRKDVRKNQLEA 471
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 155/290 (53%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + DE+ ++LF G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFG 272
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV + E AS A+ +N + LYV AQ+K +R L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/381 (53%), Positives = 279/381 (73%), Gaps = 4/381 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLY+GDL +VT+S L++ F+ G V+S+RVCRD ++R SLGY YVNF +A R
Sbjct: 59 YSMASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 118
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS FGNILS
Sbjct: 119 ALDTMNFEIIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILS 178
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD +G SKGYGFV F+ E SAQ AIEK+NGMLL+DK+V+VG F + +R E+ +S
Sbjct: 179 CKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGES 238
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
K+TNV+VKN E E L++ F +YG I SAVVM D +GK K FGFV + + + A++
Sbjct: 239 GLKYTNVFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASK 298
Query: 259 AVEALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV+ LN + E V +AQKKSER ELK ++E +E ++QG NLY+KN+++
Sbjct: 299 AVDDLNESILEGTELKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEE 358
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+ DE L+ F+ FG+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KM+ +KPL
Sbjct: 359 LTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPL 418
Query: 377 YVALAQRKEDRRARLQAQFAQ 397
YVALAQRKEDRRA+L +Q+ Q
Sbjct: 419 YVALAQRKEDRRAQLASQYMQ 439
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/375 (52%), Positives = 280/375 (74%), Gaps = 2/375 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RALE
Sbjct: 41 SLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 100
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++ + G+P R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG ILSCKV
Sbjct: 101 LNYSAIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVG 160
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT--EINKSKF 202
D +G+S+G+ FV + E+A AI+ ++GM+LNDK+V+VGH + K+ER + E ++ F
Sbjct: 161 VDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQRAHF 220
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN+ S TE++ + ++G S + D +GKSK FGFVN+ + + A +AV+
Sbjct: 221 TNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDE 280
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN K+ + ++ + G+AQK+ ER+ EL+ E+ +E K G NLY+KNLDD DD++L
Sbjct: 281 LNDKEVNGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRL 340
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ F FG+ITSCKVM+D G+SR GFV +S+PEEA++A+ EMNGKM+ SKPLYVALAQ
Sbjct: 341 RAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVALAQ 400
Query: 383 RKEDRRARLQAQFAQ 397
R+E RR L++Q AQ
Sbjct: 401 RREARRQALESQIAQ 415
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 162/292 (55%), Gaps = 21/292 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G+++S +V D +S G+ +V++ + A A
Sbjct: 126 GQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGVD-EDGKSRGFAFVHYQTGEAADAA 184
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ ++ LN K + V + H R+S A N+F+KN+D ++ K D S
Sbjct: 185 IKGVDGMMLNDKKVFVGH-HIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEFEDLVSK 243
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G+SKG+GFV + + E+A+KA+++LN +N ++++ G ++ ERD
Sbjct: 244 FGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERD 303
Query: 195 TEINK------------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
TE+ K S N+YVKNL + ++ L+ F +GTITS VM+D G S
Sbjct: 304 TELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVS 363
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ FGFV + + ++A +AV +NGK K YV AQ++ R L+ Q Q
Sbjct: 364 RNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVALAQRREARRQALESQIAQ 415
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 155/301 (51%), Gaps = 19/301 (6%)
Query: 104 PSLRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQ 158
PS ++G G ++++ LD ++ L + F+ G + S +V D + +S GY +V
Sbjct: 28 PSSTQAGPGGTGASLYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVN 87
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ N ++A+E LN + + + +RD + K+ N+++KNL ES +
Sbjct: 88 YLNAADGERALEHLNYSAIKGRPCRI----MWSQRDPALRKTGQGNIFIKNLDESIDNKA 143
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L +F +G I S V D DGKS+ F FV+++ + A A++ ++G +DK+ +VG
Sbjct: 144 LHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHH 203
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
K ER+ + + Q + N+++KN+D S+ +++ + L S FG S +
Sbjct: 204 IGKKERQSKAEEQ----------RAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALS 253
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D G S+G GFV + + E A +A+ E+N K V + L+ AQ++ +R L+ +
Sbjct: 254 LDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKTIEEK 313
Query: 399 R 399
R
Sbjct: 314 R 314
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/382 (56%), Positives = 288/382 (75%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+TSLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++ + A+
Sbjct: 39 STSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAI 98
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+ R+M+S RDP+LRK G GNIFIKNL+ ID+KAL+DTFS FGNILS K
Sbjct: 99 ERLNYTPIKGRLCRIMWSQRDPALRKKGNGNIFIKNLNADIDNKALYDTFSVFGNILSSK 158
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
+ATD NG SKG+GFV F+ E +A++AI+ LNGMLLN +++YV L ++ERD+++ K++
Sbjct: 159 IATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEKTRA 218
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+ TTEE+ ++ F + G +S V+ + DGK K FGFVN+EN +DA +AV
Sbjct: 219 NFTNVYVKNVPLDTTEEEFKELFEKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAV 278
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN +F +E YVG+AQKK ER LK Q+E E K+QG NL+IKNLDDSIDDE
Sbjct: 279 EELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDE 338
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+PFG+ITS KVMR +G S+G GFV FS+PEEA++A+ E N ++V KPLYVA+
Sbjct: 339 KLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAI 398
Query: 381 AQRKEDRRARLQAQF---AQMR 399
AQRKE RR++L Q +QMR
Sbjct: 399 AQRKEVRRSQLAQQIQARSQMR 420
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/403 (50%), Positives = 291/403 (72%), Gaps = 5/403 (1%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A+ +A+ ++ G+ +Q SLYVG+L+ +VT++ L+++FN +G V SVRVCRD T
Sbjct: 24 AEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAIT 83
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
RRSLGY YVNF N + RALE LN++P+ +P R+M+S RDP+LRK+GAGNI+IKNLD
Sbjct: 84 RRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDP 143
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
AID+KALHDTFSAFG ILSCK+ATD G S+G+GFV +++ ESA+ AI+ +NGMLLNDK+
Sbjct: 144 AIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKK 203
Query: 182 VYVGHFLRKQER--DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
V+VG + K +R E K+ FTNV++KNL TE + ++ ++G +S + + +
Sbjct: 204 VFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDE 263
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GK FGFV+++ D A +A++ L+ +F + + G+A+KK ER EL+ Q+E + E
Sbjct: 264 GKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEK 323
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
+K+QG NLYIKNLDD+IDD+KL+ F+P G+ITS KVM D +G S+G GFV +S+PEEA
Sbjct: 324 LNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEA 383
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
++A+ EMN ++V KPLYV LAQRK+ RR++LQ Q QMR
Sbjct: 384 TKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMR 426
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/402 (52%), Positives = 285/402 (70%), Gaps = 9/402 (2%)
Query: 4 VQAQGQNVNGG----GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
V QG N G NA + SLY+GDL +VT+S L++ F+ G V+S+RVCRD
Sbjct: 32 VMQQGPPANMGYPPNAPNAT-YSMASLYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDN 90
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
++R SLGY YVNF +A RAL+ +NF ++G+P+R+M+S RDP+ R++G GNIFIKNL
Sbjct: 91 TSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNL 150
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
D+ ID+K+++DTFS FGNILSCKVATD G SKGYGFV F+ E SA AIEK+NGMLL+D
Sbjct: 151 DRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSD 210
Query: 180 KQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+V+VG F + +R E+ +S K+TNV++KN + E+ L + F +YG ITSAVVM D
Sbjct: 211 KKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTD 270
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQN 295
GK K FGFV F + D A +AV+ LN + D + V +AQKKSER ELK ++E
Sbjct: 271 NSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKRKYEAL 330
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355
+E ++QG NLY+KN+++ + D+ L++ F+ FGSITS KVM D +G S+G GFV F
Sbjct: 331 KQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEK 390
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
PEEA+ A+ EMN KM+ +KPLYVALAQRKEDRRA+L +Q+ Q
Sbjct: 391 PEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 432
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F
Sbjct: 137 ARRAGNGNIFIKNLDRVIDNKSIYDTFSLFGNILSCKVATD-EEGNSKGYGFVHFETEAS 195
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDT 131
A A+E +N L+ K + V + R L +SG N+FIKN +D K L +
Sbjct: 196 ALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGLKYTNVFIKNFGDHLDEKKLTEM 255
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLR 189
FS +G I S V TD +G+ KG+GFV F + ++A KA++ LN L D ++ V +
Sbjct: 256 FSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQK 315
Query: 190 KQERDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K ER E+ + + N+YVKN+ E T++ L++ F +G+ITSA VM D
Sbjct: 316 KSERTAELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDDGLREHFANFGSITSAKVMVD 375
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+G+SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 376 ENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 434
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/376 (53%), Positives = 279/376 (74%), Gaps = 3/376 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ +VT+S LY++F+++GQV S+RVCRB T++SL Y YVN+ +EA AL+
Sbjct: 61 SLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDT 120
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
L F + GK R+M+S RDPS+RK G GN+FIKNL ID+K L+DTFS FG ILSCK+A
Sbjct: 121 LAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIA 180
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK--SKF 202
TD +G SKG+GFV +D+ ESA+ AIE +NGMLLN+ +VYV + +++R++++ + F
Sbjct: 181 TDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKMQEMIKNF 240
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN TE+ L++ F YG +TS + D +GK++ FGFVNFE+ +AA+AV+A
Sbjct: 241 TNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDA 300
Query: 263 LNGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN K+ + + YVG+AQKK ERE L+ Q++Q +E K+QG NL++KNLDD+IDD K
Sbjct: 301 LNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDTK 360
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK+ F+P+G ITS KVM + +G SRG GFV ++ PEEA+RA+ EM+ +MV+ KPLYVALA
Sbjct: 361 LKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVALA 420
Query: 382 QRKEDRRARLQAQFAQ 397
QRKE R +L QF Q
Sbjct: 421 QRKEVRHNQLSQQFQQ 436
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 149/289 (51%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +LD ++ L++ FS G + S +V B + +S Y +V + E A+ A++
Sbjct: 61 SLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALDT 120
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
L + KQ + +RD + K NV++KNL + L +F +G I S
Sbjct: 121 LAFCDIKGKQCRI----MWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILS 176
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ D G SK FGFV++++++ A A+E +NG ++ E YV + +RE
Sbjct: 177 CKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRE------ 230
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
M+E F N+Y+KN + +++L+++F +G +TS + D G +RG GFV
Sbjct: 231 --SKMQEMIKNF--TNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFV 286
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
F EA++A+ +N K + + LYV AQ+K +R L+ Q+ Q R
Sbjct: 287 NFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQWQQAR 335
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 108/204 (52%), Gaps = 17/204 (8%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFV 248
K +D++ N+ F ++YV +L S TE DL + F + G ++S V RB KS C+ +V
Sbjct: 47 KDTKDSKDNEQTFASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYV 106
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
N++ ++A A++ L K+ + +Q+ + +M++ N+
Sbjct: 107 NYQKREEAEHALDTLAFCDIKGKQCRIMWSQR------------DPSMRKKGT----GNV 150
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
+IKNL ID++ L FS FG I SCK+ D G S+G GFV + E A A+ +NG
Sbjct: 151 FIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNG 210
Query: 369 KMVVSKPLYVALAQRKEDRRARLQ 392
++ + +YVA ++DR +++Q
Sbjct: 211 MLLNNMEVYVAPHIPRKDRESKMQ 234
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/399 (53%), Positives = 291/399 (72%), Gaps = 5/399 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF ++ +A+
Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTF+AFG ILSCK
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G SK +GFV ++ E+A+ AIE +NGMLLND++VYVG + K++R+++ K+
Sbjct: 170 VATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY KN+ +EE+ +K F YG ITS + +D +GKSK FGFVNFEN + A +AV
Sbjct: 230 NFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 290 DELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFGSITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVAL
Sbjct: 350 KLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVAL 409
Query: 381 AQRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYPP 416
AQRK+ RR++L+ Q QMR A+T PP
Sbjct: 410 AQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPP 448
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 297 KEAADKFQ----GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFV 351
+EAAD Q A+LY+ L+ S+++ L ++FSP G + S +V RD + S G +V
Sbjct: 38 EEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYV 97
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+ +A+ ++N ++ +P + +QR R
Sbjct: 98 NFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLR 134
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/373 (57%), Positives = 280/373 (75%), Gaps = 5/373 (1%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
SLYV DL +VT+ L+ F+ G V+SVRVCRD+ TRRSLGY YVNF +A RA
Sbjct: 8 AVASLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERA 67
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ +NF + G+PIR+ + RDPSLRKSG GN+FIK LDK+ID+KAL+DTFSAFGNI SC
Sbjct: 68 LDTMNFDIIKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSC 127
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINK 199
K+ D +G S+GYGFV F+ +E+A+ AIEK+NGMLLN K+V+VG F+ ++ER ++
Sbjct: 128 KIVCDEHG-SRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLDLGM 186
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAAR 258
KF NVYVKNLSE T +E L++ F YG I SA VM D KSK FGFV+FEN + A +
Sbjct: 187 RKFNNVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVEALNG K YVG+AQ K ER+ ELK +FE+ KE +++QG NL++KNLDD+ID
Sbjct: 247 AVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNLDDNID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D++L++ F+ FG+ITS KVM + +G S+G GFV FS+PEEA++A++EMN K++ ++PLYV
Sbjct: 307 DKRLRKEFAQFGTITSAKVMTE-NGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYV 365
Query: 379 ALAQRKEDRRARL 391
ALAQRKEDR+A L
Sbjct: 366 ALAQRKEDRKAYL 378
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 166/293 (56%), Gaps = 19/293 (6%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKA 168
++++++L + L FS G +LS +V D+ +S GY +V F A++A
Sbjct: 8 AVASLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERA 67
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
++ +N ++ + + + + +RD + KS NV++K L +S + L +F +G
Sbjct: 68 LDTMNFDIIKGRPIRITWY----QRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGN 123
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAAR-AVEALNGKKFDDKEWYVGKAQKKSERELE 287
I+S ++ D G S+ +GFV+FE +D+AAR A+E +NG + K+ +VG+ + ER LE
Sbjct: 124 ISSCKIVCDEHG-SRGYGFVHFE-TDEAARIAIEKVNGMLLNGKKVFVGRFMSRRER-LE 180
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG-ISR 346
+ + M+ KF N+Y+KNL + DDEKL+++F +G I S KVM D S S+
Sbjct: 181 V---LDLGMR----KFN--NVYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSK 231
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV+F PE A +A+ +NG K LYV AQ K +R+A L+ +F ++R
Sbjct: 232 QFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIR 284
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +L+V +L+ N+ D +L F Q G + S +V + RS G+G+V FS+ +EA
Sbjct: 289 NRYQGVNLFVKNLDDNIDDKRLRKEFAQFGTITSAKVMTE--NGRSKGFGFVYFSSPEEA 346
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ +N + +P+ V + R
Sbjct: 347 TKAIVEMNEKIIEARPLYVALAQR 370
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/360 (55%), Positives = 272/360 (75%), Gaps = 4/360 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RVCRD++TRRSL Y Y+NF +A RAL+ +NF + G+PIR+M+
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS FGNILSCKV D +G S+G+GFV F
Sbjct: 62 SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEE 217
+ ++AQ+AI +NGMLLND++V+VGHF ++ER+ E+ +FTN+YVKNL E
Sbjct: 121 ETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVMEFTNIYVKNLQVDVDER 180
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
LQ F ++G + S VMRD G S+ FGFVNFE ++A +AV +NGK+ + YVG+
Sbjct: 181 GLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGR 240
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQK+ ER+ ELK +FEQ ++ +++QG NLY+KNLDDSI+DEKL++ FSP+G ITS KV
Sbjct: 241 AQKRLERQNELKRRFEQMKQDRLNRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKV 300
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 301 MTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 359
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 31/216 (14%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA +F T++YV +L+ +V + L DLF+Q G+++SV+V RD S+ S G+G+VNF
Sbjct: 159 GARVMEF--TNIYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRD-SSGHSRGFGFVNFEK 215
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-------------------DPSLRKSGAGNIF 115
+EA +A+ +N ++G R++Y R L + N++
Sbjct: 216 HEEAQKAVVHMNGKEVSG---RLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGVNLY 272
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+KNLD +I+ + L FS +G I S KV T+ G SKG+GFV F + E A KA+ ++NG
Sbjct: 273 VKNLDDSINDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGR 331
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
++ K +YV RK+ER K+ TN Y++ LS
Sbjct: 332 IVGTKPLYVALAQRKEER-----KAILTNQYMQRLS 362
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 270/367 (73%), Gaps = 7/367 (1%)
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDP LRKSG GNIFIKN
Sbjct: 1 MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPPLRKSGVGNIFIKN 60
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLN
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 179 DKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
D++V VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S VM
Sbjct: 120 DRKVSVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 179
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 239
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+P
Sbjct: 240 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 298
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPM 413
EEA++A+ MNG++V +KPLYVALAQRKE+R+A L Q+ Q A + P P
Sbjct: 299 EEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPA 358
Query: 414 YPPGAWI 420
P G ++
Sbjct: 359 PPSGYFM 365
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 117/214 (54%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 139 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 195
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 196 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 254
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ +NG ++
Sbjct: 255 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTGMNGRIV 313
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 314 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 342
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/375 (54%), Positives = 279/375 (74%), Gaps = 4/375 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL +VT+S LY+ F+ G ++S+RVCRD T+ SLGY YVNF + A L
Sbjct: 44 TASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVL 103
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+N + G PIR+M+S RDP RK G GN+F+KNL+K+ID+KAL+DTFS FG ILSCK
Sbjct: 104 ATMNLDVIKGNPIRIMWSQRDPGQRKRGVGNVFVKNLEKSIDNKALYDTFSTFGRILSCK 163
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK 201
V +D NG SKGYGFV F+ +ESA KAIEK+NGMLLN+ +V+VG F ++ER++E+ K+K
Sbjct: 164 VISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESELGVKAK 222
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+Y+KN E+ ++ L + F +YG S VM D G+SK FGFV+F++ +DA AV
Sbjct: 223 DYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAV 282
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ + ++QG NLYIKNLDD+I+DE
Sbjct: 283 DDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDE 342
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L++ FSPFG+ITS KVM + +G S+G GFV FS+ ++A++A EMNGK+V SKPLYV+L
Sbjct: 343 HLRKEFSPFGTITSAKVMME-NGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSL 401
Query: 381 AQRKEDRRARLQAQF 395
AQRKE+RR L+ Q+
Sbjct: 402 AQRKEERRMHLKNQY 416
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 165/302 (54%), Gaps = 19/302 (6%)
Query: 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFV 157
+ H P+ S ++++ +L + L++ FS G ILS +V D + S GY +V
Sbjct: 35 HGHSTPN---SPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYV 91
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEE 217
F + A+ + +N ++ + + +RD K NV+VKNL +S +
Sbjct: 92 NFQHRAHAEWVLATMNLDVIKGNPIRI----MWSQRDPGQRKRGVGNVFVKNLEKSIDNK 147
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L +F +G I S V+ D +G SK +GFV+FE + A +A+E +NG ++ + +VG+
Sbjct: 148 ALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGR 206
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+ + ERE EL +A D N+YIKN +++DD++L ++F+ +G S KV
Sbjct: 207 FKSRRERESELG-------VKAKDY---TNIYIKNFGENMDDQRLTEIFAKYGPTLSVKV 256
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M D G S+G GFV+F + E+A A+ +MNGK + K +YV AQ+K +R+ L+ F Q
Sbjct: 257 MTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQ 316
Query: 398 MR 399
++
Sbjct: 317 IK 318
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/399 (52%), Positives = 292/399 (73%), Gaps = 5/399 (1%)
Query: 6 AQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
A+ + + GG + + SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T+ SL
Sbjct: 33 AEVSSASNGGNSGTAVDSASLYVGELDPSVSEALLYDIFSPIGPVSSIRVCRDAVTKTSL 92
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
GY YVNF++ A+E LN+TP+ GKP R+M+S RDPS+RK+G+GNIFIKNL ID+
Sbjct: 93 GYAYVNFNDHDSGKVAIEKLNYTPIKGKPCRIMWSQRDPSMRKNGSGNIFIKNLHADIDN 152
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
KALHDTFS FGNILSCK+ATD G+SKG+GFV F+ + +A +AI+ +NGM+LN +VYV
Sbjct: 153 KALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVA 212
Query: 186 HFLRKQERDT--EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ +++R++ E K+ FTNVYVKN+ TEE+ ++ F ++G ITS + +D +GK +
Sbjct: 213 AHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELFKKFGPITSISMEKDSEGKFR 272
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFVN+EN + AA+AV+ LN +F ++ YVG+AQKK ER ELK Q+E+ E K+
Sbjct: 273 GFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEAKLEKMAKY 332
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
QG NL++KNLDD+IDDE LK+ F FG+ITS KVMR+ +G S+G GFV FS+PEEA+RA+
Sbjct: 333 QGVNLFVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRAI 392
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVALAQRK+ RR++L Q QMR
Sbjct: 393 TEKNQQIVAGKPLYVALAQRKDVRRSQLAQQIQARNQMR 431
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/417 (50%), Positives = 291/417 (69%), Gaps = 46/417 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 178 VAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+S T+ + ++ F +YG +TS+ + RD +GKS+ FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNG F +E YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DD+
Sbjct: 298 DELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDD 357
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+Q+FS FG ITS KVMRD
Sbjct: 358 KLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEK 417
Query: 342 -----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R+++L+A
Sbjct: 418 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEA 474
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G + S +V D + +S GY +V +++ +KA+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 117
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN + + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 118 EELNYTPIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E + AA+A++ +NG ++K+ YVG K +R+
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFE 233
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ + D + ++LF +G +TS + RD G SR
Sbjct: 234 EMKANF-------------TNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSR 280
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E A +A+ E+NG + LYV AQ+K +R L+ + R
Sbjct: 281 GFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAAR 333
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 61/237 (25%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ +VTD++ +LF + G V S + RD +S G+G+VNF+ + A +A++
Sbjct: 240 TNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARD-QEGKSRGFGFVNFTTHEAAYKAVD 298
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRKS N++IKNLD +D
Sbjct: 299 ELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDK 358
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L FS FG I S KV D
Sbjct: 359 LRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEKK 418
Query: 147 ---LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++N+K +YV RK R +++ S
Sbjct: 419 GDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEAS 475
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/436 (49%), Positives = 295/436 (67%), Gaps = 42/436 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA-- 79
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F QEAA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFET-QEAAER 82
Query: 80 ------------------------------RALEMLNFTPLNGKPIRVMYSHRDPSLRKS 109
RAL+ +NF + GKP+R+M+S RDPSLRKS
Sbjct: 83 AIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 142
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AI
Sbjct: 143 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 201
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
EK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G
Sbjct: 202 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 261
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ E
Sbjct: 262 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 321
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
LK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G
Sbjct: 322 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKG 380
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA--- 404
GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q A
Sbjct: 381 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPN 440
Query: 405 STVAPRMPMYPPGAWI 420
+ P P P G ++
Sbjct: 441 PVINPYQPAPPSGYFM 456
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 158/342 (46%), Positives = 215/342 (62%), Gaps = 39/342 (11%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ----------------------- 181
D NG SKGYGFV F+ +E+A++AIEK+NGMLLN
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASNIDSENVFPAAERALDTMN 119
Query: 182 --VYVGHFLRKQ--ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
V G +R +RD + KS N+++KNL +S + L +F +G I S V+ D
Sbjct: 120 FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 179
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 180 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR------ 232
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
A +F N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F E
Sbjct: 233 --AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 288
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 289 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 330
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 230 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 286
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 287 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 345
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 346 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 404
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 405 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 433
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/262 (75%), Positives = 233/262 (88%)
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
+ D EE+A AIEKLNGMLLNDK+V+VG FLRKQ+R+ N +KF NV+VKNLSESTTE
Sbjct: 1 IYVDPEEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTE 60
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
++L + FGEYG ITSAVVMR+GDGKSKCFGFVNFE+ + AA+AV+ LNGKKFD KEWYVG
Sbjct: 61 DNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVG 120
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
KAQKKSERE+ELK +FEQ M+EAADK QGANLY+KNLDDSI D+KL++LFS FGSITSCK
Sbjct: 121 KAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSITSCK 180
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396
VMRDP+G+SRGSGFVAF +P++AS+AL EMNGKM+ SKPLYVALAQRKEDRRARLQAQF+
Sbjct: 181 VMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFS 240
Query: 397 QMRPVAMASTVAPRMPMYPPGA 418
QMRPVA+ +VAPR+PMYP GA
Sbjct: 241 QMRPVAIPPSVAPRVPMYPAGA 262
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 140/245 (57%), Gaps = 27/245 (11%)
Query: 72 FSNAQEAAR-ALEMLNFTPLNGKPIRVMYSHRDPSLRK---------SGAGNIFIKNLDK 121
+ + +EAA A+E LN LN K + V P LRK + N+F+KNL +
Sbjct: 2 YVDPEEAAHNAIEKLNGMLLNDKKVFV-----GPFLRKQDRENTANSTKFNNVFVKNLSE 56
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+ L + F +GNI S V + +G+SK +GFV F++ E A KA+++LNG + K+
Sbjct: 57 STTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKE 116
Query: 182 VYVGHFLRKQERDTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
YVG +K ER+ E+ +K++ N+Y+KNL +S ++ L++ F E+G+I
Sbjct: 117 WYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGDDKLRELFSEFGSI 176
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
TS VMRD +G S+ GFV F++ DDA++A+ +NGK K YV AQ+K +R L+
Sbjct: 177 TSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQ 236
Query: 290 HQFEQ 294
QF Q
Sbjct: 237 AQFSQ 241
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 19/198 (9%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
AN+ +F +++V +L + T+ L ++F + G + S V R+ +S +G+VNF +
Sbjct: 41 ANSTKF--NNVFVKNLSESTTEDNLLEIFGEYGNITSAVVMRE-GDGKSKCFGFVNFEDP 97
Query: 76 QEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNL 119
+ AA+A++ LN +GK V S R+ L+ K+ N+++KNL
Sbjct: 98 EHAAKAVKELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRMQEAADKNQGANLYLKNL 157
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
D +I L + FS FG+I SCKV D NG S+G GFV F + + A KA+ ++NG ++
Sbjct: 158 DDSIGDDKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGS 217
Query: 180 KQVYVGHFLRKQERDTEI 197
K +YV RK++R +
Sbjct: 218 KPLYVALAQRKEDRRARL 235
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/451 (48%), Positives = 304/451 (67%), Gaps = 57/451 (12%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TE+D ++ F ++G +TS+ + RD +GKS+ FGFVNF + A++AV
Sbjct: 238 NFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DD+
Sbjct: 298 DDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 321 KLKQLFSPFGSITSCKVMRD-PS------------------------------------- 342
KL+Q+FS FG ITS KVMR+ P+
Sbjct: 358 KLRQMFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGEEAK 417
Query: 343 -------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G S+G GFV FS P++A++A+ EMN +M+ +KPLYVALAQRK+ R++
Sbjct: 418 DDKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKS 477
Query: 390 RLQAQFAQMRPVAMASTVA----PRMPMYPP 416
+L+A + M A P+ M PP
Sbjct: 478 QLEASIQARNQLRMQQAAAAAGMPQQYMQPP 508
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/465 (46%), Positives = 303/465 (65%), Gaps = 64/465 (13%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++ A + RALE L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N+T + G+P R+M+S RDP LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 174
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D N SKGYGFV ++ E+A +AI+ +NGMLLN+K+V+VGH + K++R +++ K+ FT
Sbjct: 175 DENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFT 234
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEA 262
N+YVKN+ TT+ + ++ F +YG ITSA + D + GK++ FGFVN+ +DA +AVE
Sbjct: 235 NIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEE 294
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+ G NLY+KNL D IDD++L
Sbjct: 295 LNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDEL 354
Query: 323 KQLFSPFGSITSCKVMRD--PS-------------------------------------- 342
+++F P+G+ITS KVMRD P+
Sbjct: 355 RKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSKKLD 414
Query: 343 -----------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391
G S+G GFV FS P+EA++A+ E+N KMV KPLYVALAQRKE R+++L
Sbjct: 415 TVTIQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQL 474
Query: 392 QAQF-----AQMRPVAMASTVA-----PRMPMYPPGAWIWLSAAA 426
+A +M+ A A + P+M M P G + + A
Sbjct: 475 EASIQARNQVRMQQQATAGGIPPQFMQPQMFMGPNGQPMMMPAGG 519
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/382 (54%), Positives = 286/382 (74%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +A+
Sbjct: 50 SASLYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKALHDTFSAFGRILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G SK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 170 VATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNV+VKNL+ T+++L++ F YG ITS+ + +D +GKSK FGFVNF+N +DA +AV
Sbjct: 230 NFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + YVG+AQKK ER EL+ Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 290 DELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+ F PFG+ITS +VM D G S+G GFV FS+PEEA++A+ EMN +MV KPLYVAL
Sbjct: 350 KLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVAL 409
Query: 381 AQRKEDRRARLQAQFA---QMR 399
AQRK+ RR++L+ Q QMR
Sbjct: 410 AQRKDVRRSQLEQQIQARNQMR 431
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/405 (51%), Positives = 282/405 (69%), Gaps = 25/405 (6%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-----LSTRRSLGYGYV 70
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD L TRRSLGY Y+
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYAYI 62
Query: 71 NF-------SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
NF AQ A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +I
Sbjct: 63 NFQQPADGEEQAQRAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSI 122
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+KAL+DTFS FGNILSCKV D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+
Sbjct: 123 DNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVF 181
Query: 184 VGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
VGHF ++ER+ E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G
Sbjct: 182 VGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGH 241
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
S+CFGFVNFE ++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++
Sbjct: 242 SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLR 301
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM---------RDPSGISRGSGFVA 352
++QG NLY+KNLDDSIDD+KL++ FSP+G ITS K + DP G S ++
Sbjct: 302 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKGVGAGYPFWGSADPVGTCSPSAALS 361
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
EEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 362 -GLKEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQ 405
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 30/310 (9%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL------NGQSKGYG 155
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGYA 60
Query: 156 FVQF----DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ--ERDTEINKSKFTNVYVKN 209
++ F D EE AQ+A L+ M + ++ G +R +RD + KS N+++KN
Sbjct: 61 YINFQQPADGEEQAQRAERALDTM---NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKN 117
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269
L +S + L +F +G I S V+ D G S+ FGFV+FE + A +A+ +NG +
Sbjct: 118 LEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLN 176
Query: 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329
D++ +VG + + ERE EL A + N+Y+KNL +D++ L+ LFS F
Sbjct: 177 DRKVFVGHFKSRREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQF 226
Query: 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G + S KVMRD SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+
Sbjct: 227 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 286
Query: 390 RLQAQFAQMR 399
L+ +F QM+
Sbjct: 287 ELKRRFEQMK 296
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 36/305 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V D R G+G+V+F + A +A
Sbjct: 109 GVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQQA 166
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHDTF 132
+ +N LN + + V + S R+ R++ G NI++KNL +D + L D F
Sbjct: 167 INTMNGMLLNDRKVFVGHFKSRRE---REAELGARALEFTNIYVKNLPVDVDEQGLQDLF 223
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S FG +LS KV D +G S+ +GFV F+ E AQKA+ +NG ++ + +Y G ++ E
Sbjct: 224 SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVE 283
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG- 238
R E+ K +F N+YVKNL +S ++ L+K F YG ITSA + G
Sbjct: 284 RQNEL-KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKGVGAGY 342
Query: 239 ------DGKSKCFGFVNFEN-SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
D C ++A +AV +NG+ K YV AQ+K ER+ L +Q
Sbjct: 343 PFWGSADPVGTCSPSAALSGLKEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQ 402
Query: 292 FEQNM 296
+ Q +
Sbjct: 403 YMQRL 407
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/431 (50%), Positives = 294/431 (68%), Gaps = 5/431 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L +V+D QL D F++ + SVRVCRD ST RSL YGYVNF + ++A RA+
Sbjct: 12 TASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAI 71
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TPLNGK +RVM+SHRDP R++G GN+++KNL ++ID+ L + F FG +LSCK
Sbjct: 72 ETKNHTPLNGKLMRVMWSHRDPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCK 131
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VAT +G+SKG+GFVQF++E+SA AIEKLNG ++ DKQ+YVG F++K +R +K+
Sbjct: 132 VATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKY 191
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNL TEE LQ+ F E+G I S + RD G S+ FGFVNFEN DDA A+E
Sbjct: 192 TNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMER 251
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG + K YVG+AQK++ERE L+ QFE+ KE KF+G+N+Y+KN+DD + DE+L
Sbjct: 252 MNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEEL 311
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS G+ITS K+M+D G S+G GFV FS+ EEAS+A+ +G M KPLYVA+AQ
Sbjct: 312 REHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQ 371
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARWGSHAKFLC 442
RKE+R+A+LQ Q+AQ +A P P+ PG + L A S R G + L
Sbjct: 372 RKEERQAQLQLQYAQR----IAGFHGPSTPVI-PGGYTPLYYTAPSQVHPRPGMMYQPLA 426
Query: 443 ADSSARAAGSA 453
R G A
Sbjct: 427 MRPGWRGNGFA 437
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 164/284 (57%), Gaps = 17/284 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + G ++YV +L ++ + L +LF + G V+S +V +S G+G+V F +
Sbjct: 94 DARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVA-TFEDGKSKGHGFVQFESED 152
Query: 77 EAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTF 132
A A+E LN + + K I V D L A N+++KNLD I + L + F
Sbjct: 153 SANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEELLQEKF 212
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG------- 185
S FG I+S +A D G S+G+GFV F+N + A+ A+E++NG L K +YVG
Sbjct: 213 SEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRAE 272
Query: 186 --HFLRKQ---ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
LR+Q +R +I K K +NVYVKN+ + T+E+L++ F + GTITSA +M+D G
Sbjct: 273 REQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELREHFSQCGTITSAKLMKDDKG 332
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+SK FGFV F +S++A++AV +G F K YV AQ+K ER
Sbjct: 333 RSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEER 376
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 17/194 (8%)
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENS 253
+ I+ + ++YV L ++ L +F E+ T+ S V RD G+S C+G+VNF +
Sbjct: 5 STISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISP 64
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA RA+E N + K V + + + A + N+Y+KNL
Sbjct: 65 EDAIRAIETKNHTPLNGKLMRVMWSHRDPD----------------ARRNGIGNVYVKNL 108
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+SID+ L++LF FG++ SCKV G S+G GFV F + + A+ A+ ++NG +V
Sbjct: 109 SESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNGSIVGD 168
Query: 374 KPLYVALAQRKEDR 387
K +YV +K DR
Sbjct: 169 KQIYVGKFVKKSDR 182
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/391 (53%), Positives = 285/391 (72%), Gaps = 8/391 (2%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG N + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+
Sbjct: 54 GGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYH 110
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +A++ LN++ + +P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS
Sbjct: 111 KFEDGEKAIDELNYSLIENRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFS 170
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFG ILSCKVATD GQSK +GFV ++ E+A+ AIE +NGMLLND++VYVG + K++R
Sbjct: 171 AFGRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVSKKDR 230
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+++ K+ +TN+YVKN+ +E++ + F YG ITS + +D DGKSK FGFVN+E
Sbjct: 231 ESKFEEMKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYE 290
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
A AVEALN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++K
Sbjct: 291 EHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVK 350
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD ID EKL++ F PFG+ITS KVM D +G SRG GFV FSTPEEA++A+ EMN +MV
Sbjct: 351 NLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMV 410
Query: 372 VSKPLYVALAQRKEDRRARLQAQFA---QMR 399
KPLYVALAQRK+ RR++L+ Q QMR
Sbjct: 411 NGKPLYVALAQRKDVRRSQLEQQIQARNQMR 441
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/403 (52%), Positives = 278/403 (68%), Gaps = 4/403 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL + V D L++ F + + SVRVCRD T +SL YGYVNF + Q+A RA+++
Sbjct: 13 SLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAMKL 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK IRVM+SH DPS RKSG GN+F+KNL +ID+ LHD F +GNILS KV
Sbjct: 73 KNNSYLNGKVIRVMWSHPDPSARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVV 132
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKGYGFVQF++EESA AIEKLNG + DKQ+YVG F+RK +R +K+TN
Sbjct: 133 MSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDRILPGYDAKYTN 192
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL TE LQ+ F +G I S V+ +D +G SK F FVN+EN DDA +A+EA+N
Sbjct: 193 LYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMN 252
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G KF K YV +AQKK+ERE L QFE+ KE K+Q +NLY+KN+DD + D++L+
Sbjct: 253 GLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRD 312
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS G+ITS KVMRD GIS+G GFV FS PEEA++A+ NG M KPLY+A+AQRK
Sbjct: 313 LFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRK 372
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMP-MYPPGAWIWLSAAA 426
DR+ +L +A + + + P +P +PP + + S A+
Sbjct: 373 MDRKTQLNLHYAPQQ-TGLDGSSTPVIPGGFPP--YFYHSVAS 412
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ ++LYV +++ +VTD +L DLF+ G + SV+V RD S G+G+V FSN +EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ N + KP+ + + R
Sbjct: 349 KAVRSFNGCMFHRKPLYIAIAQR 371
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/419 (50%), Positives = 287/419 (68%), Gaps = 23/419 (5%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ N F T SLYVGDL +V +S L+++F+ +G V S+RVCRD TRRSLGY YVNF
Sbjct: 31 ASDNPFQTPSLYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQM 90
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RA++ +NF+ + GKP R+M+S RDPSLR+SG GNIF+KNL++AID+K L+DTFS F
Sbjct: 91 ADAERAMDTMNFSMIKGKPCRIMWSQRDPSLRRSGVGNIFVKNLNEAIDNKQLYDTFSLF 150
Query: 136 GNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
GNILSCKV TD G S GYG+V ++ E+A AIEKL+GML++ ++V VGHF+R+ +R
Sbjct: 151 GNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDRP 210
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +TN Y+KN+ + L + F ++G + SA V R+ ++ FGF+NF +
Sbjct: 211 ---DIDSWTNCYIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEHE 267
Query: 255 DAARAVEALNGKKFD--------DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
A AVEALNGK++ ++ YVG+AQKKSERE EL+ +FE + KFQG
Sbjct: 268 SAVAAVEALNGKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGV 327
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NLY+KNLDDS+ D+ L+ F+ G+ITS +VM+D G SRG GFV +STPEE++RA+ E
Sbjct: 328 NLYVKNLDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNE 387
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ----------MRPVAMASTVAPRMPMY 414
MNGK++ +KP++VALAQR+E RRA+L+AQ A MR A P MPMY
Sbjct: 388 MNGKLIANKPIFVALAQRREVRRAQLEAQHANRAGGPGQPGMMRAPMGAPMGYPGMPMY 446
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/455 (50%), Positives = 295/455 (64%), Gaps = 53/455 (11%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNPTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQE----------------AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
YVNF + A RA++ +NF L+GKP+R+M+S RDP++R+SGA
Sbjct: 76 AYVNFQQPADGKSFFQFMSFLTFLITAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGA 135
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCK-----------VATDLNGQSKGYGFVQFD 160
GNIFIKNLDK ID+K+++DTFS FGNILSCK VA D G SKGYGFV F+
Sbjct: 136 GNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFE 195
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEED 218
EE+AQ AI+K+NGMLL K+V+VG F + +R+ E+ ++ KFTNVYVKN + +E
Sbjct: 196 TEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKKFTNVYVKNFGDHYNKET 255
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD--DKEWYVG 276
L+K F +YG ITS VM DGKSK FGFV F ++A AV+ALN D D + +V
Sbjct: 256 LEKLFAKYGAITSCDVMTS-DGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVC 314
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+AQKKSER ELK + EQ+ E K+QG NLY+KNLD+S+DDE LK+ F FG+ITS K
Sbjct: 315 RAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAK 374
Query: 337 --------------VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
VM D +G S+G GFV F PEEA+ A+ EMN KMV SKPLYVALAQ
Sbjct: 375 VGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQ 434
Query: 383 RKEDRRARLQAQFAQ-MRPVAMASTVAPRMPMYPP 416
RKEDRRA+L +Q+ Q + + M S V P MY P
Sbjct: 435 RKEDRRAQLASQYMQRLASMRMHSNV-PGGGMYNP 468
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/382 (56%), Positives = 277/382 (72%), Gaps = 16/382 (4%)
Query: 47 MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL 106
+G V S+RVCRD TRRSLGY YVNF N +A RAL+ +NFT + G P R+M+S RDPSL
Sbjct: 14 VGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPCRIMWSQRDPSL 73
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESA 165
RKSG GNIF+KNLD +ID+KAL+DTFS FGNILSCKVA + G SKGYG+V ++ E+A
Sbjct: 74 RKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAA 133
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
+AI K+NGML+ +V+VGHF ++Q+R + +TN YVKN+ T+ DL K F
Sbjct: 134 TEAIAKINGMLIAGTEVFVGHFQKRQDRP---DADDWTNCYVKNIPTQWTDADLLKEFEP 190
Query: 226 YGTITSAVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFD-----DKEWYVGKA 278
+G + SAVVM+D ++ FGFVN+E SD A +AV+ALNGK + D E YVGKA
Sbjct: 191 FGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKA 250
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
QK+SERE EL+++FEQ E +K+QG NLY+KNLDD + D++L++ F+ G+ITS +VM
Sbjct: 251 QKRSERERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVM 310
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
RDP+G SRG GFV FSTPEEA++A+ EMNGK++ KP+YVALAQRKE RRA+L+AQ AQ
Sbjct: 311 RDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQ 370
Query: 399 RPVAMASTVAPR-MPMYPPGAW 419
R A V R MPM P +
Sbjct: 371 R----AGMVVGRGMPMGQPPMY 388
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 156/293 (53%), Gaps = 20/293 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD F+ G ++S +V + +T S GYGYV++ A+ A A
Sbjct: 77 GVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEA 136
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ +N + G + V + R N ++KN+ L F FG +LS
Sbjct: 137 IAKINGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLS 196
Query: 141 CKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNGMLLN-----DKQVYVGHFLRKQER 193
V D ++G+GFV ++ ++A KA++ LNG D ++YVG ++ ER
Sbjct: 197 AVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSER 256
Query: 194 DTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E INK + N+YVKNL + ++++L+++F E GTITS+ VMRD +G
Sbjct: 257 ERELRNKFEQLKMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGN 316
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
S+ FGFV F ++A +AV +NGK K YV AQ+K R +L+ Q Q
Sbjct: 317 SRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQ 369
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/406 (51%), Positives = 285/406 (70%), Gaps = 30/406 (7%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GGA Q T SLYVG+L+ V+++ L+++FN +G V S+RVCRD TRRSLGY YVN+
Sbjct: 166 GGAAVPQ--TASLYVGELDHTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYL 223
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
NA + R RDP+LRK+G GNIFIKNLD+AID+KALHDTF+
Sbjct: 224 NAADGER---------------------RDPALRKTGQGNIFIKNLDEAIDNKALHDTFA 262
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGN+LSCKVATD G+S+GYG+V ++ ESA+ AI+ +N MLLNDKQV+VGH + ++ER
Sbjct: 263 AFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKER 322
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++I+ +++FTN+YVKNL TE + + F E+G ITSAV+ D +GKS+ FGFVN+E
Sbjct: 323 QSQIDEARAQFTNIYVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYE 382
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N ++A RAV ++ K+ K +VG+AQKKSER+ EL E +E +K+ G NLY+K
Sbjct: 383 NHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSHEAAKQERQNKYAGVNLYVK 442
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLDD +DD+KL+ F FG+ITSCKVMR+ IS+G GFV FSTP+EA++A+ EMN KM+
Sbjct: 443 NLDDDVDDDKLRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMI 502
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
+KPLYV+LAQR++ RR +L+ Q Q + M + PM PG
Sbjct: 503 GTKPLYVSLAQRRDVRRQQLEGQIMQRNQMRMQ-----QAPMMGPG 543
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/379 (54%), Positives = 281/379 (74%), Gaps = 5/379 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +RA+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ ++G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+ FT
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL+ ++ F +G +TS + D +GKS+ FGFVNFEN + A AV+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+ D ++ YVG+AQKK ER ELK +E E K+QG NL++KNLDDSID EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 384 KEDRRARLQAQFA---QMR 399
K+ RR++L+ Q QMR
Sbjct: 420 KDVRRSQLEQQIQARNQMR 438
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 270/367 (73%), Gaps = 8/367 (2%)
Query: 60 STRRSLGYGYVNFSNAQEAA-RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
S R SLG +NF N AA RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKN
Sbjct: 9 SRRPSLGGIILNFENFLLAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKN 68
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLN
Sbjct: 69 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 127
Query: 179 DKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
D++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S VM
Sbjct: 128 DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 187
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ
Sbjct: 188 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 247
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+P
Sbjct: 248 QDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSP 306
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPM 413
EEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q A + P P
Sbjct: 307 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPA 366
Query: 414 YPPGAWI 420
P G ++
Sbjct: 367 PPSGYFM 373
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 147 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 203
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 204 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 262
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 263 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 321
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 322 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 350
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/411 (50%), Positives = 286/411 (69%), Gaps = 2/411 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V+DS L D F++ + SVRVC+D ST +SL YGY+NF + Q+A RA+E+
Sbjct: 13 SLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIEL 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK +RVM+S RDP RKS GN+F+KNL ++ID+ L D F +GNILS KV
Sbjct: 73 KNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVV 132
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
T +G+SKGYGFVQF++EES++ AIEKLNG + DK++YVG F++K +R +++TN
Sbjct: 133 TSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTN 192
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL +E LQ+ F +G I S V+ +D +G SK FGFVN++N DDA +A+EA+N
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMN 252
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + K YV +AQKK+ERE L HQFE+ KE K++G+N+Y+KN+DD + DE+L+
Sbjct: 253 GSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRD 312
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G+ITS K+MRD GIS+G GFV FSTPEEA++A+ +G M KPLYVALAQRK
Sbjct: 313 HFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRK 372
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARWG 435
EDR+A+LQ Q+AQ + A YPP + + ++ S R G
Sbjct: 373 EDRKAQLQLQYAQQLARLSGPSTAIIPSGYPP--YYYAASGVISHVPPRAG 421
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 158/285 (55%), Gaps = 17/285 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + +L+V +L ++ ++ L D+F + G ++S +V +S GYG+V F + +
Sbjct: 93 DARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTS-EDGKSKGYGFVQFESEE 151
Query: 77 EAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTF 132
+ A+E LN + K + V D L A N+++KNLD + L + F
Sbjct: 152 SSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKF 211
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S+FG I+S +A D NG SKG+GFV +DN + A+KA+E +NG L K +YV +K E
Sbjct: 212 SSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAE 271
Query: 193 RDT------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R+ +I K K +N+YVKN+ + ++E+L+ F GTITSA +MRD G
Sbjct: 272 REQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKG 331
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
SK FGFV F ++A +AV +G + K YV AQ+K +R+
Sbjct: 332 ISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRK 376
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 211/411 (51%), Positives = 282/411 (68%), Gaps = 4/411 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++TD L+D F++ + SVR+CRD S+ RSL YGYVNF + Q+A+ A+E
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEA 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N T L+GK IRVM+SHRDP R+SG GN+F+KNL +ID+ L F FGNILSCKV
Sbjct: 73 KNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKVV 132
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKGYGFVQF++EE A AIEKLNG +++ KQ+Y G F+RK +R +K+TN
Sbjct: 133 VTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDRVLPNPDAKYTN 192
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL TEE L++ F E+G I S V+ +D +G S+ FGFVNFE+ +DA RA+EALN
Sbjct: 193 LYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALN 252
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + K YV +AQKK+ERE L+ QFE+ E K++G+N+Y+KN+DD+++D+ L++
Sbjct: 253 GLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDDLRE 312
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G ITS K+MRD GIS+G GFV FSTP+EAS+A+ +G M KPLYVA+AQRK
Sbjct: 313 HFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRK 372
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARWG 435
EDR+A+LQ +AQ MA P P+ P G A R G
Sbjct: 373 EDRQAQLQLHYAQR----MAGLAGPSTPVIPGGYPPLYYTAPPGVIPPRQG 419
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LY+ +L+ +VT+ L + F + G++ S+ + +D S G+G+VNF + ++A RALE
Sbjct: 191 TNLYIKNLDPDVTEEALREKFFEFGKIASLVISKD-ENGMSRGFGFVNFESPEDAKRALE 249
Query: 84 MLNFTPLNGKPIRVMYSH----------------RDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN L K + V + R+ + K N+++KN+D ++
Sbjct: 250 ALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDD 309
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + FS G I S K+ D G SKG+GFV F + A KA+ +G + + K +YV
Sbjct: 310 LREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIA 369
Query: 188 LRKQERDTEI 197
RK++R ++
Sbjct: 370 QRKEDRQAQL 379
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/384 (54%), Positives = 282/384 (73%), Gaps = 8/384 (2%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L +VT++ LY+ + + + V ++++ + Y + +
Sbjct: 3 AAASSYPMASLYVGNLHGDVTEAMLYEKLSPR-DLTHLWVIKNITN--CVLYPRLKCVSL 59
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 60 V-AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 118
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 119 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 177
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD GKSK FGFV++E
Sbjct: 178 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKH 237
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 238 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 297
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSIT +VM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 298 DDTIDDEKLRKEFSPFGSITRAEVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 356
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 357 KPLYVALAQRKEERKAHLTNQYMQ 380
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 93 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 150
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 151 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 210
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 211 GKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 270
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+IT A VM + DG+S
Sbjct: 271 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVMLE-DGRS 328
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 329 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 382
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 145/235 (61%), Gaps = 15/235 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +F
Sbjct: 61 AERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 116
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ER
Sbjct: 117 AFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 175
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G
Sbjct: 176 EAELGAK--------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGK 225
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
S+G GFV++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 226 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 280
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/379 (54%), Positives = 281/379 (74%), Gaps = 5/379 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +RA+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ ++G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+ FT
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL+ ++ F +G +TS + D +GKS+ FGFVNFEN + A AV+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+ D ++ YVG+AQKK ER ELK +E E K+QG NL++KNLDDSID EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSEKLE 359
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 384 KEDRRARLQAQFA---QMR 399
K+ RR++L+ Q QMR
Sbjct: 420 KDVRRSQLEQQIQARNQMR 438
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/421 (49%), Positives = 281/421 (66%), Gaps = 49/421 (11%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++T++ LYD F G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLR+SG GN+FIKNLD++ID+KAL+DTFS+FGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
D+NG SKG+GFV ++++ESAQ+AIEK+NGML+ DK+V+V F + +R E + F
Sbjct: 123 CDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHF 181
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TN++VKNL +S + L K+F ++G + S V+ + G SKC GF++F+ D A AVE
Sbjct: 182 TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVE 241
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ K+ + K+ Y G+AQKK+ER ELK ++E+ +E ++QG NLY+KNLDDSIDDE
Sbjct: 242 IMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEG 301
Query: 322 LKQLFSPFGSITSCKVMRD----------------------------------------- 340
L++ F FG+ITS KV+ D
Sbjct: 302 LREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGPE 361
Query: 341 ----PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396
G S+G GFV FS+PEEA++A+ EMNG++ KPLYV LAQRKEDR+A LQ Q+
Sbjct: 362 KPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYM 421
Query: 397 Q 397
Q
Sbjct: 422 Q 422
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 172/340 (50%), Gaps = 68/340 (20%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D++ S G+G+V++ + + A RA
Sbjct: 88 GQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRA 145
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAF 135
+E +N + K + V + R+ +R+ G N+F+KNL + D AL F F
Sbjct: 146 IEKVNGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQF 205
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G ++S KV D G SK +GF+ F + A+ A+E ++ + K++Y G +K ER
Sbjct: 206 GEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERS 265
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---- 237
+E+ K+K+ N+YVKNL +S +E L+++F ++G ITSA V+ D
Sbjct: 266 SEL-KAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNEK 324
Query: 238 ------------------------------GD-----------GKSKCFGFVNFENSDDA 256
GD G+SK FGFV F + ++A
Sbjct: 325 DEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAPGPEKPVSKKGRSKGFGFVCFSSPEEA 384
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+AV +NG+ F K YVG AQ+K +R+ L+ Q+ Q +
Sbjct: 385 TKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRV 424
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 162/290 (55%), Gaps = 17/290 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L+D F A G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + +S NV++KNL S + L +F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK FGFV++E+ + A RA+E +NG +DK+ +V + + +++R E
Sbjct: 118 SCKVVCDING-SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDRMREFG- 175
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSG 349
+AA F NL++KNL DS D + L + F FG + S KV+ D +G+S+ G
Sbjct: 176 -------DAAKHF--TNLFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHG 226
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
F++F ++A A+ M+ K + K LY AQ+K +R + L+A++ +++
Sbjct: 227 FISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIK 276
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/431 (49%), Positives = 292/431 (67%), Gaps = 35/431 (8%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ + SLYVGDL +V ++ L+++F+Q+G V S+RVCRD TRRSLGY YVNF N +A R
Sbjct: 39 YHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAER 98
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + + R+M+S RDPSLR+SG GNIF+KNLD+ +D+KAL+DTFS FGNILS
Sbjct: 99 ALDTMNFTTIKDQACRIMWSQRDPSLRRSGVGNIFVKNLDETVDNKALYDTFSLFGNILS 158
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SKGYG+V ++ SA AI K+NGML+ KQV+VGHF+R RD ++
Sbjct: 159 CKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVGHFVR---RDNRAGQA 215
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSA---VVMRDGDG------------KSKCF 245
+TN+YVK L S + L++ F ++G +TS V ++G G KS+ F
Sbjct: 216 DWTNLYVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGF 275
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAAD 301
GFVNFE + A +A+EALN + D E Y +AQKKSER EL+ + +Q E +
Sbjct: 276 GFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQVKMERMN 335
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS--GISRGSGFVAFSTPEEA 359
KFQG N+Y+KNLD+ + ++ +++ F+P+G+ITS +VM D S S+G GFV FS PEEA
Sbjct: 336 KFQGVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEA 395
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR-MPMYPP-- 416
++A+ EMNGKM+++KP+YVALAQR+E RR +L+AQFAQ + PR MPM P
Sbjct: 396 TKAITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQ-----RTGGMPPRGMPMAPGAQ 450
Query: 417 ---GAWIWLSA 424
G W+ A
Sbjct: 451 GMYGMPYWMGA 461
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
A + A+LY+ +L + + L ++FS G + S +V RD + S G +V F
Sbjct: 35 AIAPYHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVA 94
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A RAL MN + + + +QR R
Sbjct: 95 DAERALDTMNFTTIKDQACRIMWSQRDPSLR 125
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 272/377 (72%), Gaps = 15/377 (3%)
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
+ V V RDL+ + S+ Q+A RAL+ +NF + GKP+R+M+S RDPSLRK
Sbjct: 80 KTVQVPALRDLT--------FYYSSSRQDAERALDTMNFDVIKGKPVRIMWSQRDPSLRK 131
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++A
Sbjct: 132 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERA 190
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
IEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++
Sbjct: 191 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 250
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G S VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+
Sbjct: 251 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 310
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+
Sbjct: 311 ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSK 369
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA-- 404
G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q A
Sbjct: 370 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 429
Query: 405 -STVAPRMPMYPPGAWI 420
+ P P P G ++
Sbjct: 430 NPVINPYQPAPPSGYFM 446
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 220 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 276
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 277 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 335
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 336 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 394
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 395 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 423
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/320 (58%), Positives = 252/320 (78%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 123 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 182
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVG+ + K++R ++ K+
Sbjct: 183 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 242
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNVYVKN++ TEE+ ++ F +YG +TS+ + RD +GKS+ FGFVNF D AA+AV
Sbjct: 243 NYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAV 302
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F +E YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D IDD+
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDD 362
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+Q+FS FG ITS KVMRD
Sbjct: 363 KLRQMFSEFGPITSAKVMRD 382
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 164/290 (56%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V +++ +KA+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGEKAL 122
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 178
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D +G SK +GFV++E + AA+A++ +NG ++K+ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQ---- 234
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN++ + +E+ ++LFS +G +TS + RD G SRG G
Sbjct: 235 SKFEEM------KANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFG 288
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV FST + A++A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAAR 338
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 42/51 (82%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEA 488
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
GKSK FGFV F N DDA +AV +N + + K YV AQ+K R+ +L+
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLE 487
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++ K +YV RK R +++ S
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEAS 489
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/340 (57%), Positives = 256/340 (75%), Gaps = 5/340 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG+YG S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K YVG+A KK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 301
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS
Sbjct: 302 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFS 340
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 172/298 (57%), Gaps = 17/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ +MNGK + K +YV A +K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRA-KKVERQTELKRKFEQMK 283
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/364 (54%), Positives = 261/364 (71%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL NV+D+ L D F+ + SVRVC+D ST +SL YGYVNF + Q+A RA+E+
Sbjct: 13 SLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIEL 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK +RVM+S RDP RK+ GN+F+KNL ++ID+ L D F +GNILS KV
Sbjct: 73 KNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVV 132
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKGYGFVQF++EES+ AIEKLNG + DKQ+YVG F++K +R +++TN
Sbjct: 133 MSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTN 192
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL +E LQ+ F +G I S V+ +D G SK FGFVN++N DDA RA+EA+N
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMN 252
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K K YV +AQKK+ERE L HQFE+ KE K++G+N+Y+KN+DD + DE+L+
Sbjct: 253 GSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELRD 312
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G ITS K+MRD GIS+G GFV FSTPEEA++A+ +G M KPLYVALAQRK
Sbjct: 313 HFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
Query: 385 EDRR 388
EDR+
Sbjct: 373 EDRK 376
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 17/186 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LY+ +L+ +V+++ L + F+ G++VS+ + +D + S G+G+VN+ N +A RA+E
Sbjct: 191 TNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKD-NIGMSKGFGFVNYDNPDDAKRAME 249
Query: 84 MLNFTPLNGKPIRV-----------MYSH-----RDPSLRKSGAGNIFIKNLDKAIDHKA 127
+N + L K + V + H R + K NI++KN+D + +
Sbjct: 250 AMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEE 309
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L D FSA G I S K+ D G SKG+GFV F E A KA+ +G + + K +YV
Sbjct: 310 LRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
Query: 188 LRKQER 193
RK++R
Sbjct: 370 QRKEDR 375
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/400 (52%), Positives = 282/400 (70%), Gaps = 17/400 (4%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + F + SLYVGDL + ++ L+++FN +G V S+RVCRD TRRSLGY YVNF N
Sbjct: 3 GGSTVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFHN 62
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+A RAL+ +N+T + KP R+M+S RDP+LRKSG GN+F+KNLD +IDHKAL DTFS
Sbjct: 63 VSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDASIDHKALFDTFSL 122
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FGNILSCKVATD G+S+GYG+V +++E++A AI K+N M + DK+VYVGHF+R+ ER
Sbjct: 123 FGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTERS 182
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+S +TN+YVKN EE L+K+F +G ITS DG + FG+VNFE D
Sbjct: 183 ---GQSDWTNLYVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHD 237
Query: 255 DAARAVEALNG-----------KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
A A++ALNG +VG+AQKK ERE ELK +F+ E K+
Sbjct: 238 AAVAAMDALNGIAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKY 297
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
QG NL++KNLDD +DD++L++ F+ +G+ITS +VMR+P +G SRG GFV FS+PEEA++A
Sbjct: 298 QGVNLFVKNLDDGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKA 357
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVA 402
+ EMN K+V+ KP++VALAQRKE RRA+L+AQ AQ R A
Sbjct: 358 VTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRRTTA 397
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/320 (58%), Positives = 249/320 (77%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTFS FGNILSCK
Sbjct: 120 EDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A +AI+ +NGMLLNDK+V+VGH + K++R +++ K+
Sbjct: 180 VAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KN+ ES ++E+ K F YG + SA + RD +GKS+ FGFVNF + + AA+AV
Sbjct: 240 NFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAV 299
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+F K+ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D +DD+
Sbjct: 300 EELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDD 359
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL++LFS +G+ITS KVMRD
Sbjct: 360 KLRELFSSYGTITSAKVMRD 379
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 165/297 (55%), Gaps = 15/297 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 53 PSTAAQHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 112
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN + + + +RD + K+ NV++KNL + + L +
Sbjct: 113 ADGERALEDLNYTSIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 168
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F ++G I S V +D G SK +GFV++E ++ A +A++++NG +DK+ +VG K
Sbjct: 169 FSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKR 228
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R+ +L+ K N+YIKN+D+S+ DE+ +LF P+G + S + RD +
Sbjct: 229 DRQSKLEEM----------KANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDEN 278
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV F++ E A++A+ E+N K K LYV AQ+K +R L+ Q+ R
Sbjct: 279 GKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAAR 335
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 41/51 (80%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P+EAS+A+ EMN KMV KPLYVALAQRK+ RR +L+A
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEA 490
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++N K +YV RK R ++ S
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEAS 491
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102
+S G+G+V FSN EA++A+ +N +NGKP+ V + R
Sbjct: 441 KSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQR 480
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/344 (57%), Positives = 258/344 (75%), Gaps = 14/344 (4%)
Query: 56 CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIF 115
CRD R L + A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIF
Sbjct: 220 CRDEPQRPQLPH----------AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF 269
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
IKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGM
Sbjct: 270 IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGM 328
Query: 176 LLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LLND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S
Sbjct: 329 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 388
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VM D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FE
Sbjct: 389 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 448
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV F
Sbjct: 449 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCF 507
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
S+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 508 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 551
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 351 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 407
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 408 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 466
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 467 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 525
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 526 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 554
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 276/406 (67%), Gaps = 4/406 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVGDL +V + L+ F + G + SVRVCRD T SL YGYVNF + Q+A RA+++
Sbjct: 13 SIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKL 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK IRVM+ HRDP+ RKSG GN+F+KNL +ID+ LHD F +GNILS KV
Sbjct: 73 RNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSSKVV 132
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKGYGFVQF+ EESA AIEKLNG + +KQ+YVG F+RK +R +K+TN
Sbjct: 133 MSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAKYTN 192
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL TE LQ+ F +G I S + +D +G SK F FVN+EN DDA +A+EA+N
Sbjct: 193 LYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMN 252
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G +F K YV +AQKK+ERE L QFE+ KE K+Q +NLY+KN+DD + D++L+
Sbjct: 253 GLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRD 312
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LFS G+ITS KVMRD GIS+G GFV FS PEEA++A++ NG KPLY+A+AQRK
Sbjct: 313 LFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQRK 372
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMP-MYPPGAWIWLSAAACSW 429
++R+ +L +A + + + P +P PP + + S A+ +
Sbjct: 373 KERKTQLNLHYAPQQ-AGLDGSSTPVIPGGVPP--YFYHSVASLMF 415
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ ++LYV +++ +VTD +L DLF+ G + SV+V RD S G+G+V FSN +EA
Sbjct: 290 KYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRD-DKGISKGFGFVCFSNPEEAN 348
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ N + KP+ + + R
Sbjct: 349 KAVMSFNGCTFHRKPLYIAIAQR 371
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/326 (57%), Positives = 250/326 (76%), Gaps = 2/326 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 101
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 102 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 161
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + TEE+ ++ F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 341
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRD 340
D +DDEKL++LF P+G+ITS KVMRD
Sbjct: 342 DDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 204/390 (52%), Gaps = 62/390 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 193
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKN+D+ + + + F F
Sbjct: 194 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKF 253
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A++++N + +++YVG +K ER+
Sbjct: 254 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD
Sbjct: 314 ELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD------ 367
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
N E + DKE +A K++E+E + E+ ++ AD
Sbjct: 368 ----TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEKPADS- 411
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G D + L G S+G GFV FS+P+EAS+A+
Sbjct: 412 -GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDEASKAV 450
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 451 TEMNQRMVNGKPLYVALAQRKDVRRSQLEA 480
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 166/309 (53%), Gaps = 21/309 (6%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKG 153
+ + S P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
Y +V ++N ++A+E LN L+ K + +RD + K+ NV++KNL +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 YVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
+VG K +R+ E+K F N+YIKN+D + +E+ ++LF FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
ITS + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K +R
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 391 LQAQFAQMR 399
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 481
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/326 (57%), Positives = 250/326 (76%), Gaps = 2/326 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 101
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 102 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 161
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + TEE+ ++ F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 341
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRD 340
D +DDEKL++LF P+G+ITS KVMRD
Sbjct: 342 DDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 204/390 (52%), Gaps = 62/390 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 193
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKN+D+ + + + F F
Sbjct: 194 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKF 253
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A++++N + +++YVG +K ER+
Sbjct: 254 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD
Sbjct: 314 ELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD------ 367
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
N E + DKE +A K++E+E + E+ ++ AD
Sbjct: 368 ----TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEKPADS- 411
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G D + L G S+G GFV FS+P+EAS+A+
Sbjct: 412 -GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDEASKAV 450
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 451 TEMNQRMVNGKPLYVALAQRKDVRRSQLEA 480
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 166/309 (53%), Gaps = 21/309 (6%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKG 153
+ + S P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
Y +V ++N ++A+E LN L+ K + +RD + K+ NV++KNL +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 YVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
+VG K +R+ E+K F N+YIKN+D + +E+ ++LF FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
ITS + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K +R
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 391 LQAQFAQMR 399
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 481
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 261/348 (75%), Gaps = 7/348 (2%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
LYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 346
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 33 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 90
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 91 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 150
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 211 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 268
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 269 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF + G +SV+V D S + S G+G+V+F
Sbjct: 120 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFER 176
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 177 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 235
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 236 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 294
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 295 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 323
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/431 (49%), Positives = 289/431 (67%), Gaps = 6/431 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +++DSQL+D F+ + SVR+CRD S+ +SL YGYVNF + +A RA+E+
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK IRVM+S RDP RKS GN+F+KNL ++ID+ L D F FGNILS KV
Sbjct: 71 KNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVV 130
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKGYGFVQF+ EESA AIE+LNG L+ DKQ+YVG F++K +R + +++TN
Sbjct: 131 MSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTN 190
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL +E L++ F +G I S V +D +G SK FGFVNF+N +DA RA+E +N
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMN 250
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + K YV +AQKK+ERE L QFE+ KE K++G+N+Y+KN+DD++ DE L+
Sbjct: 251 GLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRD 310
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G+ITS K+MRD GIS+G GFV FSTPEEA++A+ +G M KPLYV+LAQRK
Sbjct: 311 HFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRK 370
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG--AWIWLSAAACSWYEARWGSHAKFLC 442
EDR+A+LQ Q+AQ +A P + P G + + + S R G + +
Sbjct: 371 EDRQAQLQLQYAQ----QIAGLAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLVYQPMA 426
Query: 443 ADSSARAAGSA 453
RA GSA
Sbjct: 427 LRPGWRANGSA 437
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +++YV +++ NV+D L D F+ G + S ++ RD S G+G+V FS +EA
Sbjct: 288 KYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEAN 346
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
+A+ + +GKP+ V + R
Sbjct: 347 KAVNSFHGFMFHGKPLYVSLAQR 369
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 260/348 (74%), Gaps = 7/348 (2%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
LYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 346
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 33 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 90
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 91 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 150
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 151 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 210
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 211 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 268
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 269 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 120 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 176
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 177 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 235
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 236 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 294
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 295 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 323
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/347 (56%), Positives = 265/347 (76%), Gaps = 5/347 (1%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 87 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 146
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
SCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 147 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 205
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 206 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 266 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 325
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 326 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 384
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSA 424
VALAQRKE+R+A L Q+ Q R ++ + P + Y P + +++A
Sbjct: 385 VALAQRKEERQAHLTNQYMQ-RMASVRAVPNPVINPYQPPSGYFMAA 430
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 117 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 174
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 175 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 234
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 235 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 294
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 295 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 352
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 353 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 406
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF + G +SV+V D S + S G+G+V+F
Sbjct: 204 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFER 260
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 261 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 319
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 320 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 378
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 379 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 407
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 260/348 (74%), Gaps = 7/348 (2%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 6 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 65
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 66 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 124
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 125 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 184
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 185 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 244
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 245 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 303
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
LYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 304 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 351
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 38 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 95
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 96 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 155
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 156 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 215
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 216 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 273
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 274 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 327
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 125 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 181
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 182 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 240
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 241 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 299
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 300 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 328
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/378 (53%), Positives = 269/378 (71%), Gaps = 5/378 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N + + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q
Sbjct: 24 NQQLYNSASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQ 83
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A ALE LN+ + G P R+M+S++DP+LRKSGAGNIF+KNLD++ID KA +DTFS FG
Sbjct: 84 DAEAALESLNYIDIKGHPTRIMWSNKDPTLRKSGAGNIFVKNLDRSIDTKAFYDTFSHFG 143
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
ILSCKVA D NG SKGYGFV +D EESA++AIEK+NGM++ K+V V F++KQ+RD
Sbjct: 144 PILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRDPA 203
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ FTN+YV+N S EE L++ +YG ITS ++ DG G+ F FVNF + A
Sbjct: 204 -SVDVFTNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKGRK--FAFVNFAEPEMA 260
Query: 257 ARAVEALNGKKFDD--KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
AVEALNG K ++ + V Q K++R+ LK Q+ + + +NLYIKNLD
Sbjct: 261 KEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLD 320
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
DS DE L++LF FGSITSCK+MRD SG+SRG GFV FS PEEA++A+ M+ K+V K
Sbjct: 321 DSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKIVKGK 380
Query: 375 PLYVALAQRKEDRRARLQ 392
PLYV LA++KE R +RLQ
Sbjct: 381 PLYVGLAEKKEQRLSRLQ 398
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 21/195 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV + + + L ++ G++ S+ + D R+ + +VNF+ + A A+E
Sbjct: 209 TNLYVRNFPVSWDEEALKQFLDKYGEITSMMIKEDGKGRK---FAFVNFAEPEMAKEAVE 265
Query: 84 MLNFTPLN-GKPIRVMYSHRDPSLRKS-----------------GAGNIFIKNLDKAIDH 125
LN T L G ++ H+D + R++ + N++IKNLD +
Sbjct: 266 ALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLDDSFTD 325
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
++L + F FG+I SCK+ D +G S+G+GFV F E A KAI ++ ++ K +YVG
Sbjct: 326 ESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGMHLKIVKGKPLYVG 385
Query: 186 HFLRKQERDTEINKS 200
+K++R + + +S
Sbjct: 386 LAEKKEQRLSRLQQS 400
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/438 (49%), Positives = 282/438 (64%), Gaps = 45/438 (10%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A F SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVN+
Sbjct: 4 AIAQNFAMASLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQT 63
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF P+ G+PIR+M+S RDPSLR+SG GN+FIKNLDK IDHKA++DTFS F
Sbjct: 64 PDAERALDTMNFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNF 123
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVATD NG SKGYG YVG F+ + +R
Sbjct: 124 GNILSCKVATDENGVSKGYG---------------------------YVGKFIPRAQRMR 156
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
EI ++ KFTNVYVKN E+ T++ L F ++G I S VVM++ D KSK FGFV+FEN
Sbjct: 157 EIGETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKE-DDKSKGFGFVSFENP 215
Query: 254 DDAARAVEALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+DA AV+ +N + K+ YVG+AQKK+ER+ ELK ++E E +++G NLY+KN
Sbjct: 216 EDAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKN 275
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
LDDS+DD +L++ F FG ITS KVM D G S+G GFV FS+P+EA+RA+ EMN + +
Sbjct: 276 LDDSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLG 335
Query: 373 SKPLYVALAQRKEDRRARLQAQFAQ------MRPVAMASTVA------PRMPMYPPGAWI 420
+KPLYVALAQRKEDR+A+L +Q Q + V M + P MP P A++
Sbjct: 336 NKPLYVALAQRKEDRKAQLASQLVQRVNALRFQTVGMGQMYSGSGYFFPTMPQAGPRAYL 395
Query: 421 WLSAAACSWYEA--RWGS 436
A A RW S
Sbjct: 396 TALPAGAPQVRATPRWMS 413
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/346 (56%), Positives = 260/346 (75%), Gaps = 7/346 (2%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 82 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 141
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
SCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 142 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 200
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 201 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 261 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 320
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 321 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 379
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
VALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 380 VALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 425
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 112 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 169
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F F
Sbjct: 170 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKF 229
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 230 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 289
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 290 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 347
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 348 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 401
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF + G +SV+V D S + S G+G+V+F
Sbjct: 199 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFER 255
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 256 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 314
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 315 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 373
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 374 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 402
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 165
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 226 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 285
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 286 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 346 DIDDEKLRELFGPYGTITSAKVMRD 370
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 199/390 (51%), Gaps = 64/390 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 138 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 196
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKNLD ID F F
Sbjct: 197 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKF 256
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A+E++N + +++YVG +K ER+
Sbjct: 257 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREE 316
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD
Sbjct: 317 ELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD------ 370
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
N E A + K +DKE + + + E + E+ KEA
Sbjct: 371 ----TNVERESSPESAGKEKEANKENDKEATPEAEKAEEKAEEKPAESSEEKDKEAK--- 423
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
K + P G S+G GFV FS+P+EAS+A+
Sbjct: 424 --------------------------------KSDKKPFGKSKGFGFVCFSSPDEASKAV 451
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 452 TEMNQRMVNGKPLYVALAQRKDVRRSQLEA 481
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 160/291 (54%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N ++A+E
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ K + +RD + K+ NV++KNL + + L +F +G I S
Sbjct: 113 LNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 168
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K +R+ E+
Sbjct: 169 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEM 228
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+YIKNLD IDD++ +++F FG ITS + RD G SRG
Sbjct: 229 KANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGF 275
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+ Q+ R
Sbjct: 276 GFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 21/203 (10%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDA 256
N+ ++YV L S TE L + F G + S V RD +S + +VN+ N+ D
Sbjct: 47 NQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
RA+E LN K + S+R+ L+ K N++IKNLD +
Sbjct: 107 ERALEDLNYTLIKGKPCRI----MWSQRDPALR------------KTGQGNVFIKNLDSA 150
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
ID++ L F+ FG+I SCKV +D G S+G GFV + T E A+ A+ +NG ++ K +
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Query: 377 YVALAQRKEDRRARLQAQFAQMR 399
+V K+DR Q++F +M+
Sbjct: 211 FVGHHISKKDR----QSKFEEMK 229
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFST 355
AA++ A+LY+ LD S+ + L +LFS G + S +V RD ++R G +V ++
Sbjct: 45 AANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD--AVTRRSLGYAYVNYNN 102
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQR 383
+ RAL ++N ++ KP + +QR
Sbjct: 103 TADGERALEDLNYTLIKGKPCRIMWSQR 130
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 431 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 482
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRD 372
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 164/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKNLD IDD++ +++F FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 482
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRD 372
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 164/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKNLD IDD++ +++F FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 482
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/342 (55%), Positives = 257/342 (75%), Gaps = 7/342 (2%)
Query: 6 AQGQNVNGGG-----ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
AQG N + G A + + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD
Sbjct: 41 AQGDNADTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAV 100
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
TRRSLGY YVN++ + +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD
Sbjct: 101 TRRSLGYAYVNYNTTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLD 160
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K
Sbjct: 161 VAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEK 220
Query: 181 QVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+VYVGH + K++R ++ K+ FTN+Y+KN+S T+++ + F +G +TS+ + RD
Sbjct: 221 KVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQ 280
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+GKS+ FGFVNF + AA+AV+ LNGK F ++ YVG+AQKK ERE EL+ +E E
Sbjct: 281 EGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARME 340
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
A+K+QG NLYIKNLDD +DDEKL+QLF+ FG ITS KVMRD
Sbjct: 341 KANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKVMRD 382
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 63 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKAL 122
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 123 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 178
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 179 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 238
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKN+ + D++ + LF+PFG +TS + RD G SR
Sbjct: 239 EMKANF-------------TNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSR 285
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E A++A+ ++NGK + LYV AQ+K +R L+ + R
Sbjct: 286 GFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 338
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVA 402
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A +
Sbjct: 437 GKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQLR 496
Query: 403 MASTVA----PRMPMYPP 416
M A P+ M PP
Sbjct: 497 MQQAAAAAGMPQQYMQPP 514
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 52/143 (36%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
AN++ +LY+ +L+ +V D +L LF G + S +V RD +T
Sbjct: 342 ANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKVMRDNATDSGNEDEGSSEEKETE 401
Query: 63 ------------------------------------RSLGYGYVNFSNAQEAARALEMLN 86
+S G+G+V FSN +A +A+ +N
Sbjct: 402 AKKDEEEEEKPEEAKTDDKEDADKKSDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMN 461
Query: 87 FTPLNGKPIRVMYSHRDPSLRKS 109
+NGKP+ V + R +RKS
Sbjct: 462 QRMVNGKPLYVALAQRK-DVRKS 483
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/398 (51%), Positives = 275/398 (69%), Gaps = 30/398 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TRRSLGY YVNF N +A RAL+
Sbjct: 35 SLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDT 94
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++P+ GK R+M+SHRDP+LRK+G N+F+KNLDK ID+KAL+DTFS FGNILSCKVA
Sbjct: 95 LNYSPIRGKQCRIMWSHRDPTLRKAGNANVFVKNLDKTIDNKALYDTFSLFGNILSCKVA 154
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
TD +G+S+GYGFV F+N+ESA KAI KLNGM++ +K VYVG F + ER + KF
Sbjct: 155 TDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAERAEQHGDEPRKF 214
Query: 203 TNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TNVY+K+L ES TTEED+QK+F E+G ITS + D G+ F FVN+E+ D AA+AVE
Sbjct: 215 TNVYIKHLPESWTTEEDVQKAFEEFGKITSVAIQTDRKGRR--FAFVNYEDFDSAAKAVE 272
Query: 262 ALNGKKFDDKE-----------------------WYVGKAQKKSERELELKHQFEQNMKE 298
A+NGK +E YV +AQ K+ER EL+++F+ E
Sbjct: 273 AMNGKDMRTQEEIDAGKGEEESTEEGSDEMPEYKLYVTRAQTKTERSAELRNKFQAKNTE 332
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357
Q NLY+KNL + +DDEKL+Q+F FG ITS KVM D +G+SRG GFV F+
Sbjct: 333 KVGN-QSCNLYVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQA 391
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
+ +A+ M+ K+ KPL+VA+A++++ R RLQ ++
Sbjct: 392 DGEKAIQAMHLKLYGGKPLFVAVAEKRDARIERLQQRY 429
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAV 260
F ++YV +L TE L + F G + S V RD +S + +VNF N DA RA+
Sbjct: 33 FASLYVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERAL 92
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + S R+ L+ K AN+++KNLD +ID++
Sbjct: 93 DTLNYSPIRGKQCRI----MWSHRDPTLR------------KAGNANVFVKNLDKTIDNK 136
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L FS FG+I SCKV D G SRG GFV F E A +A+ ++NG M+ K +YV
Sbjct: 137 ALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGP 196
Query: 381 AQRKEDR 387
Q+ +R
Sbjct: 197 FQKHAER 203
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/346 (56%), Positives = 257/346 (74%), Gaps = 7/346 (2%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNIL
Sbjct: 2 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 61
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
SCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 62 SCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 120
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 121 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 180
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 181 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 240
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP Y
Sbjct: 241 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFY 299
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
VALAQRKE+R+A L Q Q A + P P P G ++
Sbjct: 300 VALAQRKEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFM 345
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 32 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 89
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 90 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 149
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 150 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 209
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 210 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 267
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K +YV AQ+K ER+ L +Q Q M
Sbjct: 268 KGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 321
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 119 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 175
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 176 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 234
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 235 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 293
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K YV RK+ER ++ TN +++ ++
Sbjct: 294 ATKPFYVALAQRKEER-----QAHLTNQHMQRMA 322
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/349 (56%), Positives = 261/349 (74%), Gaps = 7/349 (2%)
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 109 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 168
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 169 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 227
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S V+ D GKSK FGFV+FE +
Sbjct: 228 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHE 287
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 288 DARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 347
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 348 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 406
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 407 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 455
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 142 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 199
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 200 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 259
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E A+KA++++NG LN KQ+YVG +K ER T
Sbjct: 260 GPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQT 319
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 320 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 377
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 378 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 431
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 229 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGK-SKGFGFVSFER 285
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 286 HEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 344
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 345 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 403
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 404 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 432
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/348 (56%), Positives = 258/348 (74%), Gaps = 7/348 (2%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++ EK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
LYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A R
Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERV 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 155 SEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 275 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 184 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 240
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 299
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 300 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 359 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/324 (58%), Positives = 250/324 (77%), Gaps = 3/324 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKN+ + TT+E+ ++ F ++G ITSA + RD + GKS+ FGFVNF + + A
Sbjct: 230 MKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AV+ LN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 290 AAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL+ LFS +G+ITS KVMRD
Sbjct: 350 IDDEKLRDLFSGYGTITSAKVMRD 373
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 202/391 (51%), Gaps = 70/391 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 140 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNA 198
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ N+++KN+D+ + + F F
Sbjct: 199 IKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKF 258
Query: 136 GNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S +A D +G+S+G+GFV F + ESA A++ LN +++YVG +K ER+
Sbjct: 259 GEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHERE 318
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L+ F YGTITSA VMRD
Sbjct: 319 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDN---- 374
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
+ E+S D+ +K+++ E + E++ EAA+K
Sbjct: 375 -----LAAESSSDS----------------------EKEAKSEGKENEPPEESKDEAAEK 407
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
+ + + D+KL G S+G GFV FS+P+EAS+A
Sbjct: 408 AETKDTKEAKTESKKADKKL-------------------LGKSKGFGFVCFSSPDEASKA 448
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 449 VTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 479
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L S TE L + F G + S V RD +S + +VN+ N+ D RA+E
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K N++IKNLD +ID++ L
Sbjct: 115 LNYTLIKGRPCRI----MWSQRDPALR------------KTGQGNVFIKNLDTAIDNKAL 158
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
F+ FG+I SCKV +D G S+G GFV + T E A A+ +NG ++ K ++V
Sbjct: 159 HDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHI 218
Query: 383 RKEDRRARLQAQFAQMR 399
K+DR Q++F +M+
Sbjct: 219 AKKDR----QSKFEEMK 231
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 69/246 (28%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ + TD + +LF + G++ S + RD + +S G+G+VNF++ + AA A++
Sbjct: 235 TNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVD 294
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN + + R H R+ LRK N++IKNL ID +
Sbjct: 295 NLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 354
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L D FS +G I S KV D
Sbjct: 355 LRDLFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETKDTK 414
Query: 147 ------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
L G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R
Sbjct: 415 EAKTESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 474
Query: 195 TEINKS 200
+++ S
Sbjct: 475 SQLEAS 480
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/321 (57%), Positives = 252/321 (78%), Gaps = 3/321 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ + K+
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN++ T+++ + F +YG +TS+ + RD + GKS+ FGFVNF + +DA++A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN K+F + YVG+AQKK ERE EL+ +E +E A K+QG NLYIKNLDD +DD
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD 340
EKL+QLFS FG ITS KVMRD
Sbjct: 360 EKLRQLFSEFGPITSAKVMRD 380
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 161/294 (54%), Gaps = 22/294 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGIS 345
E+K F N+Y+KN++ + D++ + LF +G +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
RG GFV F++ E+AS+A+ E+N K + LYV AQ+K +R L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 75/344 (21%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ + A++A
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN++ + F
Sbjct: 206 IKHVNGMLLNEK--KVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE 263
Query: 134 AFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+G++ S +A D G+S+G+GFV F + E A KA+++LN + + +YVG +K E
Sbjct: 264 KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHE 323
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-- 238
R+ E+ KS + N+Y+KNL + +E L++ F E+G ITSA VMRD
Sbjct: 324 REEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Query: 239 ----------------------------DGKSK-----------------CFGFVNFENS 253
D K + FGFV F N
Sbjct: 384 EPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANP 443
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
DDA +AV +N + ++K YV AQ+K R K+Q EQ+++
Sbjct: 444 DDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
GFV F+ P++A++A+ EMN +MV +KPLYVALAQRK+ R+ +L+
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE 479
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/383 (50%), Positives = 264/383 (68%), Gaps = 36/383 (9%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-------------------------- 97
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
V D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 98 ------VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 150
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 151 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 210
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 211 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 270
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 271 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 329
Query: 375 PLYVALAQRKEDRRARLQAQFAQ 397
PLYVALAQRKE+R+A L Q+ Q
Sbjct: 330 PLYVALAQRKEERQAHLTNQYMQ 352
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 152 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 209 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 327 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 355
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/419 (50%), Positives = 289/419 (68%), Gaps = 28/419 (6%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G +++ F + SLYVGDL + ++ L+++FN +G V S+RVCRD TRRSLGY YVNF
Sbjct: 3 GASSSVPFHSASLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRRSLGYAYVNFH 62
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N +A RAL+ +N+T + KP R+M+S RDP+LRKSG GN+F+KNLD +IDHKAL DTFS
Sbjct: 63 NVSDAERALDTMNYTLIKSKPCRIMWSQRDPTLRKSGVGNVFVKNLDSSIDHKALFDTFS 122
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVATD G+S+GYG+V +++E++A AI K+N M + DK+VYVGHF+R+ ER
Sbjct: 123 LFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER 182
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+S +TN+YVKN E L+K+F + DG + FG+VNFE
Sbjct: 183 S---GQSDWTNLYVKNFPADWDEATLRKAFEMFAA---------ADGSA--FGWVNFEGH 228
Query: 254 DDAARAVEALNGKK-----------FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
D A A++ALNG +VG+AQKK ERE ELK +F+ E K
Sbjct: 229 DAAVAAMDALNGASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKFDAAKIERIKK 288
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361
+QG NL++KNLDD++DD++L++ F+ +G+ITS +VMR+P +G SRG GFV FS+PEEA++
Sbjct: 289 YQGVNLFVKNLDDALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAK 348
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ-MRPVAMASTVAPRMP-MYPPGA 418
A+ EMN K+V+ KP++VALAQRKE RRA+L+AQ AQ + P +++ MP MY GA
Sbjct: 349 AVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRLHPAHLSAPYGAAMPIMYAAGA 407
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/322 (60%), Positives = 251/322 (77%), Gaps = 4/322 (1%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 71 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 130
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 131 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 189
Query: 198 N-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+K FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+FE +D
Sbjct: 190 GAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHED 249
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD
Sbjct: 250 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 309
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKP
Sbjct: 310 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 368
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 369 LYVALAQRKEERKAHLTNQYMQ 390
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA
Sbjct: 103 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRA 160
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN +D + L + FS +
Sbjct: 161 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKY 220
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER
Sbjct: 221 GKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 280
Query: 196 E------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E I++ + N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK
Sbjct: 281 ELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 339
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 340 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRI 392
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 145/235 (61%), Gaps = 15/235 (6%)
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
A++A++ +N ++ K + + +RD + KS NV++KNL +S + L +F
Sbjct: 71 AERALDTMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 126
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ER
Sbjct: 127 AFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER 185
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
E EL + A +F N+YIKN D +DDE+LK+LFS +G S KVM DP+G
Sbjct: 186 EAELGAK--------AKEF--TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGK 235
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
S+G GFV+F E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 236 SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLK 290
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 263/350 (75%), Gaps = 5/350 (1%)
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RALE +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL DTFSAFG
Sbjct: 133 DAERALETMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFG 192
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D +G SKGYGFV F+ ++A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 193 NILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 251
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E + L++ FG++G S VM D G SK FGFVNFE +
Sbjct: 252 LGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHE 311
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AVE +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 312 DAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLD 371
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 372 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 430
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSA 424
PLY+ALAQRKE+R+A L Q+ Q R ++ + P + Y P + +++A
Sbjct: 431 PLYIALAQRKEERQAHLTNQYMQ-RMASVRAVPNPVLNPYQPPSGYFMTA 479
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 168/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F+ G ++S +V D S GYG+V+F A RA
Sbjct: 166 GVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCD--EHGSKGYGFVHFETRDAAERA 223
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN + + V + R + GA N++IKN + +D L F F
Sbjct: 224 IDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKF 283
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G SKG+GFV F+ E AQKA+E++NG LN K++YVG +K ER T
Sbjct: 284 GPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQT 343
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 344 EL-KRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 401
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K Y+ AQ+K ER+ L +Q+ Q M
Sbjct: 402 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQRM 455
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L LF + G +SV+V D S S G+G+VNF
Sbjct: 253 GARAKEF--TNVYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGT-SKGFGFVNFER 309
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A+E +N LNGK I V + + D R G N+++K
Sbjct: 310 HEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGV-NLYVK 368
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 369 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 427
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +Y+ RK+ER ++ TN Y++ ++
Sbjct: 428 ATKPLYIALAQRKEER-----QAHLTNQYMQRMA 456
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/341 (56%), Positives = 255/341 (74%), Gaps = 7/341 (2%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 383 RKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
RKE+R+A L Q+ Q A + P P P G ++
Sbjct: 299 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 339
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 204 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 113 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 169
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 170 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 228
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 229 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 288 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 316
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/341 (56%), Positives = 255/341 (74%), Gaps = 7/341 (2%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 298
Query: 383 RKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
RKE+R+A L Q+ Q A + P P P G ++
Sbjct: 299 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 339
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 204 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 315
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 113 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 169
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 170 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 228
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 229 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 288 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 316
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/431 (48%), Positives = 282/431 (65%), Gaps = 24/431 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++TD L+D F++ + SVR+CRD S+ RSL YGYVNF + Q+A+ A+E
Sbjct: 13 SLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNFISPQDASHAIEA 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK--------------------NLDKAID 124
N T L+GK IRVM+SHRDP R+SG GN+F+K NL +ID
Sbjct: 73 KNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVTSIIDAELYFLVCLNLSDSID 132
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+ L F FGNILSCKV +G+SKGYGFVQF++EE A AIEKLNG +++ KQ+Y
Sbjct: 133 NVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYA 192
Query: 185 GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
G F+RK +R +K+TN+Y+KNL TEE L++ F E+G I S V+ +D +G S+
Sbjct: 193 GKFVRKTDRVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRG 252
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVNFE+ +DA RA+EALNG + K YV +AQKK+ERE L+ QFE+ E K++
Sbjct: 253 FGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYR 312
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G+N+Y+KN+DD+++D+ L++ FS G ITS K+MRD GIS+G GFV FSTP+EAS+A+
Sbjct: 313 GSNVYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVN 372
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSA 424
+G M KPLYVA+AQRKEDR+A+LQ +AQ MA P P+ P G
Sbjct: 373 TFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQ----RMAGLAGPSTPVIPGGYPPLYYT 428
Query: 425 AACSWYEARWG 435
A R G
Sbjct: 429 APPGVIPPRQG 439
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LY+ +L+ +VT+ L + F + G++ S+ + +D S G+G+VNF + ++A RALE
Sbjct: 211 TNLYIKNLDPDVTEEALREKFFEFGKIASLVISKD-ENGMSRGFGFVNFESPEDAKRALE 269
Query: 84 MLNFTPLNGKPIRVMYSH----------------RDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN L K + V + R+ + K N+++KN+D ++
Sbjct: 270 ALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDDD 329
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + FS G I S K+ D G SKG+GFV F + A KA+ +G + + K +YV
Sbjct: 330 LREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIA 389
Query: 188 LRKQERDTEI 197
RK++R ++
Sbjct: 390 QRKEDRQAQL 399
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/329 (57%), Positives = 251/329 (76%), Gaps = 2/329 (0%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
VT++ L++ F+ G V+S+RVCRDL RRSLGY YVNF +A RAL+ +NF + G+P
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGY 154
IR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFGNILSCKVATD SKGY
Sbjct: 64 IRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGY 123
Query: 155 GFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSE 212
GFV F+ EE+A AI+K+NGMLLN ++V+VG F+ + ER+ ++ + +F NVY+KN +
Sbjct: 124 GFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGD 183
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+E L++ F +YG ITSA VM D GK K FGFV+FE+ ++A +AV LN K+ + K
Sbjct: 184 DLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKV 243
Query: 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
YVG+AQKKSER ELK +FEQ + +++QG NLY+KNLDDSIDDE+L++ F+PFG+I
Sbjct: 244 LYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLRKEFTPFGTI 303
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASR 361
TS KVM D +G S+G GFV FS PEEA++
Sbjct: 304 TSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 158/278 (56%), Gaps = 15/278 (5%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
+ L + FS+ G +LS +V DL + S GY +V F A++A++ +N ++ +
Sbjct: 4 VTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMNFDMVKGRP 63
Query: 182 VYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ + +RD + KS NV++KNL +S + + +F +G I S V D +
Sbjct: 64 IRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESN 119
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK +GFV+FE + A A++ +NG + ++ +VGK +SERE +L + + M
Sbjct: 120 SKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLGQKARRFM----- 174
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
N+YIKN D +DDEKL+++F +G ITS KVM D +G +G GFV+F PE A +
Sbjct: 175 -----NVYIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEK 229
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
A+ ++N K + K LYV AQ+K +R A L+ +F Q++
Sbjct: 230 AVNDLNNKELNGKVLYVGRAQKKSERAAELKRRFEQLK 267
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/329 (56%), Positives = 245/329 (74%), Gaps = 2/329 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++
Sbjct: 35 GDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 94
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 95 NTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFA 154
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R
Sbjct: 155 AFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 214
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ K+ FTN+Y+KN+ T+++ + F +G ITSA + D DGKS+ FGFVN+
Sbjct: 215 QSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYA 274
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N + A AV +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+K
Sbjct: 275 NHESAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVK 334
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
NL D IDDEKL+ LF+P+G+ITS KVMRD
Sbjct: 335 NLTDDIDDEKLRDLFTPYGTITSAKVMRD 363
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 164/314 (52%), Gaps = 22/314 (7%)
Query: 91 NGKPIRVMY-SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LN 148
NG P+ + D + + + ++++ LD ++ L++ FS+ G + S +V D +
Sbjct: 23 NGAPVEATPEAAGDAANNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 82
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208
+S GY +V ++N ++A+E LN L+ K + +RD + K+ NV++K
Sbjct: 83 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIK 138
Query: 209 NLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
NL + + L +F +G I S V +D SK +GFV++E ++ A A++ +NG
Sbjct: 139 NLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLL 198
Query: 269 DDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+DK+ +VG K +R+ E+K F N+YIKN+D I D++ + +
Sbjct: 199 NDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDLEITDDEFRTM 245
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F FG ITS + D G SRG GFV ++ E A A+ EMN K V S+ LYV AQ+K
Sbjct: 246 FEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKH 305
Query: 386 DRRARLQAQFAQMR 399
+R L+ Q+ R
Sbjct: 306 EREEELRKQYEAAR 319
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 424 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 474
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 76/463 (16%)
Query: 4 VQAQGQNVNGGGANA----NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL 59
V+AQG N + G + + SLYVG+L+ +VT++ L++LF+Q+G V S+R
Sbjct: 36 VEAQGDNADAAGPTPTTAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIR----- 90
Query: 60 STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNL
Sbjct: 91 ---------------------ALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNL 129
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
D AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+
Sbjct: 130 DVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNE 189
Query: 180 KQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+VYVGH + K++R ++ K+ FTNVYVKN++ T+++ + F +G +TS+ + RD
Sbjct: 190 KKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVTDDEFRDLFAAFGDVTSSSLARD 249
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+GKS+ FGFVNF + AA+AVE LN K F ++ YVG+AQKK ERE EL+ +E
Sbjct: 250 QEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSYEAARL 309
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PS-------------- 342
E A+K+QG NLYIKNLDD +DDEKL+ LF+ FG ITS KVMRD P+
Sbjct: 310 EKANKYQGVNLYIKNLDDEVDDEKLRTLFADFGPITSAKVMRDTPTDSKEDEEGSSEEKE 369
Query: 343 -----------------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
G S+G GFV FS P++A++A+ EMN +MV
Sbjct: 370 KENKPEAEEKTEEKEGSEKKEKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVHG 429
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
KPLYVALAQRK+ R+++L+A +A A+ P+ M PP
Sbjct: 430 KPLYVALAQRKDVRKSQLEASIQARNQLAAAAAGLPQQYMQPP 472
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/324 (57%), Positives = 247/324 (76%), Gaps = 3/324 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+FE +
Sbjct: 183 MGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA RAV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVM 338
D +DDE+L++ FSPFG+ITS KVM
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVM 326
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE E M A +F N+YIKN + +DDEKLK++F +G S +VM D
Sbjct: 177 KEREAE--------MGARAKEF--TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMK 284
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQR 383
P +A RAL MN ++ +P+ + +QR
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQR 89
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/371 (53%), Positives = 272/371 (73%), Gaps = 4/371 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +A
Sbjct: 105 KYRQASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQ 164
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GKPIR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG IL
Sbjct: 165 KALDTMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 224
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+ N
Sbjct: 225 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 283
Query: 199 K-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K ++FTNVYVKN + +E L++ F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAK 343
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK + + +VG+AQKKSER+ ELK FEQ +E + QG LYIKNLDD+I
Sbjct: 344 KAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTI 403
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL + FS FGSI+ K+MR+ G S+G G + FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 404 DDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLY 462
Query: 378 VALAQRKEDRR 388
+ALAQR +R+
Sbjct: 463 IALAQRPXERK 473
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ DL +S GY +V F AQKA++
Sbjct: 110 SLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDT 169
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 170 MNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 225
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ + FV+F+N + A RA+E +NG D +VG+ + + +RE EL+++
Sbjct: 226 SKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNK 284
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ N+Y+KN D +DDE+LK++FS +G S KVM D G S+G GFV
Sbjct: 285 VNEF----------TNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFV 334
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNGK V + L+V AQ+K +R+A L+ F Q++
Sbjct: 335 SFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLK 382
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 110/201 (54%), Gaps = 20/201 (9%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
N+F T++YV + ++ D +L ++F++ G+ +SV+V D S +S G+G+V+F + +
Sbjct: 285 VNEF--TNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SGGKSKGFGFVSFDSHEA 341
Query: 78 AARALEMLNFTPLNGKPIRV---------------MYSH-RDPSLRKSGAGNIFIKNLDK 121
A +A+E +N +NG+ + V M+ + R+ ++IKNLD
Sbjct: 342 AKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDD 401
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
ID + L FS+FG+I K+ + G+SKG+G + F + E A KA+ ++NG +L K
Sbjct: 402 TIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKP 460
Query: 182 VYVGHFLRKQERDTEINKSKF 202
+Y+ R ER +++ F
Sbjct: 461 LYIALAQRPXERKNFLHQPVF 481
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/320 (56%), Positives = 245/320 (76%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 174 VAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KN++ T++ + F +G +TS+ + RD DGKS+ FGFVNF + A+ AV
Sbjct: 234 NFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAV 293
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K F +E YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DDE
Sbjct: 294 EELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDE 353
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+ +F+ FG ITS KVMRD
Sbjct: 354 KLRTMFTEFGPITSAKVMRD 373
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G + S +V D + +S GY +V +++ +KA+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E + A +A++ +NG ++K+ YVG K +R+
Sbjct: 170 LSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 229
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKN+ + D++ + LF G +TS + RDP G SR
Sbjct: 230 EMKANF-------------TNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSR 276
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E AS A+ E+N K + LYV AQ+K +R L+ + R
Sbjct: 277 GFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAAR 329
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+A QMR
Sbjct: 433 GFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQARNQMR 486
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/341 (56%), Positives = 253/341 (74%), Gaps = 7/341 (2%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 61 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 120 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 180 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP YVALAQ
Sbjct: 240 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQ 298
Query: 383 RKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
RKE+R+A L Q Q A + P P P G ++
Sbjct: 299 RKEERQAHLTNQHMQRMASVQAVPNPVINPYQPAPPSGYFM 339
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 26 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 144 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA VM +G G+S
Sbjct: 204 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K +YV AQ+K ER+ L +Q Q M
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQRM 315
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 117/214 (54%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 113 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 169
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 170 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 228
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 229 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 287
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K YV RK+ER ++ TN +++ ++
Sbjct: 288 ATKPFYVALAQRKEER-----QAHLTNQHMQRMA 316
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 199/391 (50%), Gaps = 64/391 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREA---- 378
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V+ + + + K+ DK G+++ +SE
Sbjct: 379 ----IVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESE------------------- 415
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 416 -----------DKSKSEEKSE------GKTESAKPEKRHLGKSKGFGFVCFSNPDEASKA 458
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 459 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEA 489
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 160/301 (53%), Gaps = 22/301 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN++ + DE+ + LF +G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D +G SRG GFV FS E AS A+ +N + + LYV AQ+K +R L+ Q+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 332
Query: 399 R 399
R
Sbjct: 333 R 333
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S K G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +
Sbjct: 426 GKTESAKPEKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKS 485
Query: 196 EINKS 200
++ S
Sbjct: 486 QLEAS 490
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/374 (52%), Positives = 273/374 (72%), Gaps = 4/374 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 103 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLAD 162
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG
Sbjct: 163 AQRALDTMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 222
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+
Sbjct: 223 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 281
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 282 RNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 341
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + + +VG+AQKKSER+ ELK FEQ +E + QG LYIKNLDD
Sbjct: 342 AKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDD 401
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL + FS FGSI+ K+MR+ G S+G G + FS+PEEA++A+ EMNG+++ SKP
Sbjct: 402 TIDDEKLWREFSSFGSISRVKIMRE-EGRSKGFGLICFSSPEEATKAMAEMNGRILGSKP 460
Query: 376 LYVALAQRKEDRRA 389
LY+ALAQ+ +R A
Sbjct: 461 LYIALAQKPXERNA 474
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F AQ+A++
Sbjct: 110 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDT 169
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + K + L +RD + KS NV++KNL S + L + F +G I S
Sbjct: 170 MNFDTIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 225
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE EL+++
Sbjct: 226 SKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNK 284
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A++F N+YIKN D +DDE+LK++FS +G S KVM D SG S+G GFV
Sbjct: 285 --------ANEF--TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFV 334
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNGK + + L+V AQ+K +R+A L+ F Q++
Sbjct: 335 SFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLK 382
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/396 (51%), Positives = 283/396 (71%), Gaps = 6/396 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+QMG V+S+RVCRD +R+SLGY YVN+ +A ALE
Sbjct: 9 SLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEE 68
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF ++ KP R+M++ R+P+ R+SGAGNIFIKNL+K ID+KAL+DTFSAFG ILSCKVA
Sbjct: 69 LNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKVA 128
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
D G+S+GYGFV F+ EE AQKAI+ +NG +L + V V FL ++ER+ + ++ +TN
Sbjct: 129 ADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVTVTKFLSRKEREQQGGRT-YTN 187
Query: 205 VYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
+YVKNL +S T +DL+K F ++GTITS + +D + KS+ FGFVNFENS+ A AVEA+
Sbjct: 188 IYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAM 247
Query: 264 NGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
N K+ + D++ +VG+A KK ERE ELK ++ +E +K + +NLYIK+L + + ++ L
Sbjct: 248 NEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDAL 307
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+ FS FG+ITS K+M D +G SRG GFV F + +EA+ A+ EM+G M+ KPLYVALA
Sbjct: 308 RDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALAL 367
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
RK DR+ +L ++ + P M P M M PP A
Sbjct: 368 RKVDRQKQLASR--RTMPGQMPMGYLPFM-MPPPQA 400
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LY+ L +VT+ L D F++ G + S+++ D + S G+G+VNF +A EAA A++
Sbjct: 291 SNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTD-NNGDSRGFGFVNFDSADEAAAAIQ 349
Query: 84 MLNFTPLNGKPIRVMYSHR 102
++ + ++GKP+ V + R
Sbjct: 350 EMHGSMIDGKPLYVALALR 368
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358
A+ Q A+LY+ +L + + L + FS GS+ S +V RD S S G +V + +
Sbjct: 2 AEHQQNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHAD 61
Query: 359 ASRALLEMNGKMVVSKPLYVALAQR 383
A AL E+N + + KP + AQR
Sbjct: 62 AKHALEELNFEKIHDKPCRIMWAQR 86
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/329 (54%), Positives = 252/329 (76%), Gaps = 2/329 (0%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
G A+ + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++
Sbjct: 52 GAQAAHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYN 111
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+ +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+
Sbjct: 112 TTIDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFA 171
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AFGNILSCKVA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+V+VGH + K++R
Sbjct: 172 AFGNILSCKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDR 231
Query: 194 DTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ K+ FTN+YVKN+ T++ ++ F ++G +TSA + RD GK++ FGFVNF
Sbjct: 232 QSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFI 291
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N + A+ AV+ LNGK F ++ YVG+AQKK ERE EL+ +E E A K+QG NLY+K
Sbjct: 292 NHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVK 351
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
NL+D +DDEKL++LF+P+G+ITS KVMRD
Sbjct: 352 NLEDDVDDEKLRELFAPYGAITSAKVMRD 380
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 156/291 (53%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+E+
Sbjct: 63 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGEKALEE 122
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ NV++KNL + + L +F +G I S
Sbjct: 123 LNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 178
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E + A++A++ +NG ++K+ +VG K +R+ E+
Sbjct: 179 CKVAQDESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEM 238
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+Y+KN+ D++ ++LF FG +TS + RD +G +RG
Sbjct: 239 KANF-------------TNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGF 285
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F E AS A+ E+NGK + + LYV AQ+K +R L+ + R
Sbjct: 286 GFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAAR 336
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 42/51 (82%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV F+ P+EA++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEA 497
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/431 (48%), Positives = 290/431 (67%), Gaps = 21/431 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLY+GDL V + L+++FN +G V S+RVCRD TRRSLGY YVN+ +A R
Sbjct: 6 FSSASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAER 65
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NFT + GKP R+M+S RDPS+R+SG GNIF+KNL + ID+K L+DTFS FGNILS
Sbjct: 66 ALDSMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILS 125
Query: 141 CKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
CKV TD G SKGYG+V ++ E+A AIEKL+GML++ K+V VG F+R RD +
Sbjct: 126 CKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMR---RDNRPGQ 182
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ +TNV++KN+ TE+ L++ F +G + SA ++ G S FGFVNF + AA A
Sbjct: 183 ADWTNVFIKNIPFEWTEDKLREEFEGFGEVVSAKP-KEVQG-SLGFGFVNFATHEAAAAA 240
Query: 260 VEALNGKKFDDKE--------WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
V+ +N K+F E +VG+AQKK+ERE EL+ ++E + KFQG NLY+K
Sbjct: 241 VKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQGVNLYVK 300
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKM 370
NLDD++ D+ L+ FS G+ITS +VM+D +GISRG GFV +STPE+A+RA+ EMNGK+
Sbjct: 301 NLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKI 360
Query: 371 VVSKPLYVALAQRKEDRRARLQAQFAQMR-----PVAMASTVAPRMP-MYPPGAWIWLSA 424
++ KP++VALAQR++ RRA+L+AQ Q R P+ A A MP MY PG + +
Sbjct: 361 ILGKPIFVALAQRRDVRRAQLEAQHNQGRGNLPGPMGGAYPGAVPMPGMYRPGPGMQPAY 420
Query: 425 AACSWYEARWG 435
+ R G
Sbjct: 421 PVPQMMQGRGG 431
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +LYV +L+ VTD L D F+ MG + S RV +DL T S G+G+V +S ++A
Sbjct: 291 KFQGVNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDAT 350
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
RA+ +N + GKPI V + R
Sbjct: 351 RAVNEMNGKIILGKPIFVALAQR 373
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/339 (55%), Positives = 253/339 (74%), Gaps = 3/339 (0%)
Query: 5 QAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
+A G+ +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRS
Sbjct: 55 EAAGEPSGTSAPATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 114
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGY YVN++N + RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID
Sbjct: 115 LGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAID 174
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+V
Sbjct: 175 NKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 234
Query: 185 GHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GK 241
GH + K++R ++ K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GK
Sbjct: 235 GHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGK 294
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
S+ FGFVNF + + A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A
Sbjct: 295 SRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 354
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
K+QG NLYIKNL D IDDEKL++LFS +G+ITS KVMR+
Sbjct: 355 KYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 393
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 194/389 (49%), Gaps = 63/389 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 160 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 218
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 219 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 278
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 279 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 338
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 339 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE----- 393
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V E D E + D E K + KSE E
Sbjct: 394 -AIVDVPAETEKDKEADKEKAKKETGDKSEE---KGESKSESE----------------- 432
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 433 -----------DKSKSEEKTE------GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKA 475
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARL 391
+ EMN +MV KPLYVALAQRK+ R++++
Sbjct: 476 VTEMNQRMVHGKPLYVALAQRKDVRKSQV 504
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 160/301 (53%), Gaps = 22/301 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 66 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 125
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 126 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 181
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 182 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 241
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN++ + DE+ + LF +G ITS + R
Sbjct: 242 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 288
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D +G SRG GFV FS E AS A+ +N + + LYV AQ+K +R L+ Q+
Sbjct: 289 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 348
Query: 399 R 399
R
Sbjct: 349 R 349
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S K G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +
Sbjct: 443 GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKS 502
Query: 196 EIN-------KSKFTNVY 206
+++ +S+ TN+Y
Sbjct: 503 QVSTKVIHFLRSQVTNIY 520
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 197/391 (50%), Gaps = 63/391 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMR------ 376
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
E DA E + + G KSE + E K + E
Sbjct: 377 --------EAIVDAPAEAEKDKEADKEKAKKEAGD---KSEEKGEAKSESE--------- 416
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 417 -----------DKSKSEEKTE------GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 460 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEA 490
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 21/197 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L S TE L + F G + S V RD +S + +VN+ N+ D RA+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K N++IKNLD +ID++ L
Sbjct: 119 LNYTLIKGRPCRI----MWSQRDPALR------------KTGQGNVFIKNLDTAIDNKAL 162
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
F+ FG+I SCKV +D G S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 383 RKEDRRARLQAQFAQMR 399
K+DR Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/344 (57%), Positives = 261/344 (75%), Gaps = 7/344 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N GG N + SLYVGDL ++VT + L++ F+ G V+S+RVC+D+ TRRSLGY Y
Sbjct: 2 NQGPGGPN---YPMASLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAY 58
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
VNF +A RAL+ +NF L G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++
Sbjct: 59 VNFQQPADAERALDTMNFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMY 118
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+V+VG F+
Sbjct: 119 DTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIP 178
Query: 190 KQERDTEI-NKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E+ K+K FTNVYVKN E T++ L++ F +YG ITS V+ + D KS+ FGF
Sbjct: 179 RKEREKELGEKAKLFTNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGF 238
Query: 248 VNFENSDDAARAVEALNGKK-FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
V FE+ + A RAVE LNGK+ + K+ YVG+AQKK+ER+ ELK +FEQ E +++QG
Sbjct: 239 VAFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLKMERMNRYQGV 298
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
NLY+KNLDD+IDDE+L++ FSPFG+ITS KVM + S+G GF
Sbjct: 299 NLYVKNLDDTIDDERLRKEFSPFGTITSAKVMLEERR-SKGFGF 341
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 161/289 (55%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L + + + +RD + KS NV++KNL ++ + + +F +G I S
Sbjct: 74 MNFDTLKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V +D G SK +GFV+FE + A ++++ +NG + K+ +VGK + ERE EL
Sbjct: 130 CKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELG-- 187
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + D+ LK++F +G ITS V+ + SRG GFV
Sbjct: 188 ------EKAKLF--TNVYVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFV 239
Query: 352 AFSTPEEASRALLEMNGKMVVS-KPLYVALAQRKEDRRARLQAQFAQMR 399
AF PE A RA+ ++NGK ++ K LYV AQ+K +R+ L+ +F Q++
Sbjct: 240 AFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQLK 288
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 196/396 (49%), Gaps = 63/396 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE----- 377
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V E D E + D E K + KSE E
Sbjct: 378 -AIVDVPAETEKDKEADKEKAKKEGGDKSEE---KGESKSESE----------------- 416
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 417 -----------DKSKSEEKTE------GKTESTKPEKKHLGKSKGFGFVCFSNPDEASKA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
+ EMN +MV KPLYVALAQRK+ R++++ + +
Sbjct: 460 VTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIHL 495
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 160/301 (53%), Gaps = 22/301 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 50 PATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 109
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ + + +RD + K+ NV++KNL + + L +
Sbjct: 110 ADGERALEDLNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 165
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 166 FAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 225
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KN++ + DE+ + LF +G ITS + R
Sbjct: 226 DRQSKFEEMKANF-------------TNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSR 272
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D +G SRG GFV FS E AS A+ +N + + LYV AQ+K +R L+ Q+
Sbjct: 273 DNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAA 332
Query: 399 R 399
R
Sbjct: 333 R 333
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G S K G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +
Sbjct: 427 GKTESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKS 486
Query: 196 EIN-------KSKFTNVY 206
+++ +S+FTN+Y
Sbjct: 487 QVSTKVIHLIRSQFTNIY 504
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/315 (60%), Positives = 247/315 (78%), Gaps = 4/315 (1%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLD++ID+KAL+DTFSAFGNILSCKV
Sbjct: 1 MNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KSK-F 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ K+K F
Sbjct: 61 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN E + +L++ F ++G S VMRD GKSK FGFV++E +DA +AVE
Sbjct: 120 TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 180 MNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 240 RREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 383 RKEDRRARLQAQFAQ 397
RKE+R+A L Q+ Q
Sbjct: 299 RKEERKAHLTNQYMQ 313
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 26 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 83
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D L + FS F
Sbjct: 84 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQF 143
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D +G+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 144 GKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQA 203
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L++ F +G+ITSA VM + DG+S
Sbjct: 204 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLE-DGRS 261
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 262 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 315
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 122/213 (57%), Gaps = 25/213 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + V D L +LF+Q G+ +SV+V RD S+ +S G+G+V++
Sbjct: 113 GAKAKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEK 169
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKN 118
++A +A+E +N ++GK I V + R L++ N++IKN
Sbjct: 170 HEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 229
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 230 LDDTIDDEKLRREFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 288
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER K+ TN Y++ ++
Sbjct: 289 SKPLYVALAQRKEER-----KAHLTNQYMQRVA 316
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/324 (58%), Positives = 245/324 (75%), Gaps = 3/324 (0%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 50 QPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 109
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNIL
Sbjct: 110 RALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN- 198
SCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 199 -KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDA 256
K+ FTNVYVKNL T E+ ++ F +YG ITSA + RD + GKS+ FGFVNF N D A
Sbjct: 230 MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSA 289
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE LN K++ ++ YVG+AQKK ERE EL+ Q E E A K+QG NLY+KNL D
Sbjct: 290 AAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDD 349
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL+ LF FG+ITS +VMRD
Sbjct: 350 IDDEKLRDLFIGFGNITSARVMRD 373
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 159/301 (52%), Gaps = 22/301 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L + FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PTNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+Y+KNL+ + +E+ ++LF +G ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSR 268
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D +G SRG GFV F + A+ A+ ++N K + LYV AQ+K +R L+ Q
Sbjct: 269 DNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAA 328
Query: 399 R 399
R
Sbjct: 329 R 329
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 125/282 (44%), Gaps = 53/282 (18%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +LE VT+ + +LF + G++ S + RD T +S G+G+VNF N AA A+E
Sbjct: 235 TNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVE 294
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRK N+++KNL ID +
Sbjct: 295 DLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEK 354
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L D F FGNI S +V D +
Sbjct: 355 LRDLFIGFGNITSARVMRDT------------------------------------ISDA 378
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+ E++ E +K NV + E+ E+ +K+ T + GKSK FGF
Sbjct: 379 GSESEKEKEASKDNKENVKEETKKEAGGEDSAEKTDKAEKPDTKKPTDKK-LGKSKGFGF 437
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
V F N D+A++AV +N + + K YV AQ+K R+ +L+
Sbjct: 438 VCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLE 479
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 249/325 (76%), Gaps = 3/325 (0%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNI
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 172
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++
Sbjct: 173 LSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFE 232
Query: 199 --KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDD 255
K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GKS+ FGFVNF + +
Sbjct: 233 EMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEA 292
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A+ AVEALN + ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D
Sbjct: 293 ASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 352
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LFS +G+ITS KVMR+
Sbjct: 353 DIDDEKLRELFSSYGNITSAKVMRE 377
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 197/394 (50%), Gaps = 63/394 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMR------ 376
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
E DA E + + G KSE + E K + E
Sbjct: 377 --------EAIVDAPAEAEKDKEADKEKAKKEAGD---KSEEKGEAKSESE--------- 416
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
D S +EK + G S K + G S+G GFV FS P+EAS+A
Sbjct: 417 -----------DKSKSEEKTE------GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKA 459
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396
+ EMN +MV KPLYVALAQRK+ R+++L+ A
Sbjct: 460 VTEMNQRMVHGKPLYVALAQRKDVRKSQLETPSA 493
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 21/197 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L S TE L + F G + S V RD +S + +VN+ N+ D RA+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + +Q+ A K N++IKNLD +ID++ L
Sbjct: 119 LNYTLIKGRPCRIMWSQRDP----------------ALRKTGQGNVFIKNLDTAIDNKAL 162
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
F+ FG+I SCKV +D G S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 383 RKEDRRARLQAQFAQMR 399
K+DR Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/339 (55%), Positives = 253/339 (74%), Gaps = 3/339 (0%)
Query: 5 QAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
+A G++ +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRS
Sbjct: 39 EAAGESSGTTAPATSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 98
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGY YVN++N + RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID
Sbjct: 99 LGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAID 158
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+V
Sbjct: 159 NKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 218
Query: 185 GHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GK 241
GH + K++R ++ K+ FTN+YVKN+ + T+E+ + F +YG ITSA + RD + GK
Sbjct: 219 GHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGK 278
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
S+ FGFVNF + + A+ AVE LN + ++ YVG+AQKK ERE EL+ Q+E E A
Sbjct: 279 SRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 338
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
K+QG NLYIKNL D IDDEKL++LFS +G+ITS KVMR+
Sbjct: 339 KYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 200/391 (51%), Gaps = 61/391 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 144 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 202
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 203 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKY 262
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 263 GEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHERE 322
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREAISDV 382
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
++ + + G K +DK A+ KS+ + E K + E+ + D
Sbjct: 383 PA---DAEKDKEADKEKAKKETGDKPEDK------AETKSDEKSEDKSKSEEKTEGKTD- 432
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
GA K+L G S+G GFV FS P+EAS+A
Sbjct: 433 --GAKTEKKHL-----------------------------GKSKGFGFVCFSNPDEASKA 461
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 462 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEA 492
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 21/197 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV L S TE L + F G + S V RD +S + +VN+ N+ D RA+E
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K N++IKNLD +ID++ L
Sbjct: 119 LNYTLIKGRPCRI----MWSQRDPALR------------KTGQGNVFIKNLDTAIDNKAL 162
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
F+ FG+I SCKV +D G S+G GFV + T E A+ A+ +NG ++ K ++V
Sbjct: 163 HDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHI 222
Query: 383 RKEDRRARLQAQFAQMR 399
K+DR Q++F +M+
Sbjct: 223 AKKDR----QSKFEEMK 235
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/320 (56%), Positives = 247/320 (77%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++++ +AL
Sbjct: 46 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 105
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 106 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 165
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER ++ K+
Sbjct: 166 VAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 225
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ T+++ + F ++G ITSA + RD GKS+ FGFVN+ + A+ AV
Sbjct: 226 NFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAV 285
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN +F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL+D +DDE
Sbjct: 286 ETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 345
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+ +F+PFG+ITS KVMRD
Sbjct: 346 KLRDMFTPFGTITSAKVMRD 365
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 154/290 (53%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 46 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 105
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 106 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 161
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 162 LSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 217
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + D++ + LF G ITS + RD G SRG G
Sbjct: 218 SKFEEM------KANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFG 271
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV + E AS A+ +N + LYV AQ+K +R L+ Q+ R
Sbjct: 272 FVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAAR 321
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 73/246 (29%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ +VTD + DLF + G + S + RD +S G+G+VN+ + A+ A+E
Sbjct: 228 TNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKHEAASVAVE 286
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDH-- 125
LN T +G+ + R H R+ LRK N++IKNL+ +D
Sbjct: 287 TLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEK 346
Query: 126 --------------KALHDTFSA------------------------------------- 134
K + D A
Sbjct: 347 LRDMFTPFGTITSAKVMRDAMPADRSDSPSDKKEEEKDGKEESKETEGEAKEDSTDDKKE 406
Query: 135 ---FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
G+ ++ K + G+SKG+GFV F N + A KA+ ++N +L K +YV RK
Sbjct: 407 DTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKD 466
Query: 192 ERDTEI 197
R ++
Sbjct: 467 VRKNQL 472
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 17/119 (14%)
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+DS DD+K + G + K + G S+G GFV FS P+EA++A+ EMN KM+
Sbjct: 398 EDSTDDKKED---TKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEG 454
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMAST------------VAP-RMP-MYPPGA 418
KPLYVALAQRK+ R+ +L+A + M +AP + P M+PPG
Sbjct: 455 KPLYVALAQRKDVRKNQLEATIQARNQLRMQQQQQQQFGGIPQMFIAPGQQPMMFPPGG 513
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
GKSK FGFV F N D+A +AV +N K + K YV AQ+K R+ +L+
Sbjct: 424 GKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKDVRKNQLE 473
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/419 (48%), Positives = 278/419 (66%), Gaps = 46/419 (10%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ TSLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRS GY YVNF + ++A R
Sbjct: 8 YPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF +NGK +R+M+S RDPSLRKSG
Sbjct: 68 ALDTMNFDVINGKSVRIMWSQRDPSLRKSG------------------------------ 97
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
V D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 98 --VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGAR 154
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVYVKN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 155 AKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQK 214
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ LNGK+ K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+K LDD ID
Sbjct: 215 AVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYID 274
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNGK+V +KPLYV
Sbjct: 275 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 333
Query: 379 ALAQRKEDRRARLQAQF----AQMRPVAMASTVAPRMPMYPPGAWIWL-----SAAACS 428
ALAQRKE+R+A L + A +R V ++ P P P G ++ ++AACS
Sbjct: 334 ALAQRKEERQAHLTNEHMHRTASVRAVPNPAS-KPYQPAPPSGYFMAALPQTQNSAACS 391
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 22/201 (10%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++YV + ++ D L DLF + G +SV+V D +S G+G+V+F
Sbjct: 152 GARAKEF--TNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTD-ERGKSKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ LN L+GK I V + + D R G N+++K
Sbjct: 209 GEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGL-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
LD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 YLDDYIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGKIV 326
Query: 178 NDKQVYVGHFLRKQERDTEIN 198
K +YV RK+ER +
Sbjct: 327 ATKPLYVALAQRKEERQAHLT 347
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFS 354
M + + +LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSTPSYPMTSLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P++A RAL MN ++ K + + +QR R
Sbjct: 61 HPKDAERALDTMNFDVINGKSVRIMWSQRDPSLR 94
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/327 (55%), Positives = 249/327 (76%), Gaps = 2/327 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++
Sbjct: 40 APAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +ALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAF 159
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER +
Sbjct: 160 GNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMS 219
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ +++D + F ++G ITSA + RD GKS+ FGFVN+
Sbjct: 220 KFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKH 279
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A+ AV+ALN F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL
Sbjct: 280 EAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNL 339
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD 340
+D +DDEKL+ +F+PFG+ITS KVMRD
Sbjct: 340 NDDVDDEKLRDMFTPFGTITSAKVMRD 366
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 153/290 (52%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + D+ + LF G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFG 272
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV + E AS A+ +N + LYV AQ+K +R L+ Q+ R
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 71/244 (29%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ +V+D DLF + G + S + RD +S G+G+VN+ + A+ A++
Sbjct: 229 TNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKHEAASAAVD 287
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN T G+ + R H R+ LRK N++IKNL+ +D +
Sbjct: 288 ALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEK 347
Query: 128 LHDTFSAFGNILSCKV------------ATD----------------------------- 146
L D F+ FG I S KV ATD
Sbjct: 348 LRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDETKEETEKPEEAKDESKEDSDDKKD 407
Query: 147 -------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+ G+SKG+GFV F N + A KA+ ++N ++ +K +YV RK R
Sbjct: 408 EKADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVR 467
Query: 194 DTEI 197
++
Sbjct: 468 KNQL 471
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 42/51 (82%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P+EA++A+ EMN KM+ +KPLYVALAQRK+ R+ +L+A
Sbjct: 423 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEA 473
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
GKSK FGFV F N D+A +AV +N K ++K YV AQ+K R+ +L+
Sbjct: 423 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLE 472
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/368 (51%), Positives = 269/368 (73%), Gaps = 2/368 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ V++ +L D+F+ MG +VSVR+CRD + +SL Y YVNF + +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALAC 89
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GKP+R+M+SHRDP RK+G N+F+KNLD +I+ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ NG+SK +GFVQFD+++SA A+ LN +L+ K+++V F++K ER ++KFTN
Sbjct: 150 EE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNL E TE+ ++ F E+G + + V+M+DG+GKS+ FGFVNFE+ D+A +AVEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K+ +VG+AQKK+ER+ LKH+ E + K + +NLY+KNLD S+DD+KL++
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G ITS KVMR SG+S+G GFV FST EEA +AL +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 385 EDRRARLQ 392
EDR+ L+
Sbjct: 388 EDRQRVLR 395
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 158/283 (55%), Gaps = 17/283 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +L+ ++ + L D+F + G ++S +V + +S +G+V F + A A
Sbjct: 115 GLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAA 172
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L LN T L+GK + V R + ++ N+++KNL + + + D FS FG
Sbjct: 173 LNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGK 232
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---- 193
+ + + D NG+S+G+GFV F++ + A+KA+E LNG +L K+++VG +K ER
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELL 292
Query: 194 -------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+ I K K +N+YVKNL S ++ LQ+ F G ITSA VMR G SK FG
Sbjct: 293 KHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFG 352
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
FV F S++A +A+ LNG + Y+ AQ+K +R+ L+
Sbjct: 353 FVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLR 395
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEAS 360
+ A LY+ +LD + + +L +FS G + S ++ RD SG S +V F P +AS
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDAS 84
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+AL +N ++ KP+ + + R
Sbjct: 85 KALACLNHTKLMGKPMRIMWSHR 107
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/327 (55%), Positives = 250/327 (76%), Gaps = 3/327 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+NAN + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A
Sbjct: 49 SNANP-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 108 NDGERALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAF 167
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R +
Sbjct: 168 GNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMS 227
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ T+++ + F +YG ITSA + D +GKS+ FGFVN+
Sbjct: 228 KFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRH 287
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE LN F + YVG+AQKK ERE EL+ Q+E +E + K+QG NLY+KNL
Sbjct: 288 EDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNL 347
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD 340
D IDD++L+++F P+G+ITS KVMRD
Sbjct: 348 ADEIDDDELRKIFEPYGAITSAKVMRD 374
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 157/300 (52%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 48 PSNANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 107
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E+LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 108 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 163
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++++NG ++K+ +VG K
Sbjct: 164 FAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKK 223
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R E+K F N+Y+KN+D D++ + LF +G ITS +
Sbjct: 224 DRMSKFEEMKANF-------------TNIYVKNIDPEATDDEFRALFEKYGDITSASLAH 270
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV + E+A++A+ E+N + LYV AQ+K +R L+ Q+ R
Sbjct: 271 DQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQR 330
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/379 (49%), Positives = 269/379 (70%), Gaps = 8/379 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L + F+ +G+V+S+RVCRD TRRSLGY YVNF ++A +ALE
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF ++G+PIR+M+S R PS + AGN+F+KNL+ +++ KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D +SKGYGFVQF+ EE+A+KAI+ NG++ K++YVG F + ER + ++ F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN ++ +E LQ+ F ++G I S V DGDGK FGFV FEN DDA +AV+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 263 LNGKKF--DDKEWYVGKAQKKSER--ELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+ D++ YV + QKK ER EL+ K+Q E+N E A +++GANLY+KNLDD+ID
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKN--ERAKRYEGANLYLKNLDDAID 314
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ L++ F +G++ S KVMR G S+G GFV F P+EA +A+ M GKMV +KPLYV
Sbjct: 315 DDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYV 374
Query: 379 ALAQRKEDRRARLQAQFAQ 397
++AQRKEDR+A + +Q+ Q
Sbjct: 375 SMAQRKEDRKAFIASQYMQ 393
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 180/332 (54%), Gaps = 30/332 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L +V LY+ F+ G +VS ++ D ++ S GYG+V F + A +A++
Sbjct: 105 NVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSK-SKGYGFVQFETEEAARKAIDG 163
Query: 85 LNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGNI 138
N GK I V S R +++ N+F+KN +D + L F+ FG I
Sbjct: 164 TNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKI 223
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQERDTE 196
+SC V+ D +G+ G+GFV F+N + A+KA++ + L +D+++YV F +K ER E
Sbjct: 224 VSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAE 283
Query: 197 INKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+++ + N+Y+KNL ++ ++ L++SFGEYG + SA VMR DG+SK
Sbjct: 284 LDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKG 343
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ---NMKEAAD 301
FGFV F+ D+A +A+ A+ GK K YV AQ+K +R+ + Q+ Q +++ A
Sbjct: 344 FGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRIASIRMQAT 403
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
F Y+ D ++ LF+ +G T
Sbjct: 404 SFGSGMTYMS------DSTVVQPLFACYGRGT 429
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
+K ++YV +L E L + F G + S V RD +S + +VNFE +DA +
Sbjct: 13 AKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQ 72
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E +N + + +Q++ + + N+++KNL+ S++
Sbjct: 73 ALETMNFDIVHGRPIRIMWSQRRP----------------STSRVAAGNVFVKNLNGSVN 116
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+ L FS FG+I SCK+ D S+G GFV F T E A +A+ NG + K +YV
Sbjct: 117 SKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYV 176
Query: 379 ALAQRKEDR 387
Q + +R
Sbjct: 177 GRFQSRSER 185
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ +LY+ +L+ + D L F + G V+S +V R RS G+G+V F E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A +A+ + + KP+ V + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/379 (49%), Positives = 269/379 (70%), Gaps = 8/379 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L + F+ +G+V+S+RVCRD TRRSLGY YVNF ++A +ALE
Sbjct: 17 SLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQALET 76
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF ++G+PIR+M+S R PS + AGN+F+KNL+ +++ KAL++ FS FGNI+SCK+A
Sbjct: 77 MNFDIVHGRPIRIMWSQRRPSTSRVAAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLA 136
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D +SKGYGFVQF+ EE+A+KAI+ NG++ K++YVG F + ER + ++ F
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCF 196
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN ++ +E LQ+ F ++G I S V DGDGK FGFV FEN DDA +AV+
Sbjct: 197 TNVFVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKD 256
Query: 263 LNGKKF--DDKEWYVGKAQKKSER--ELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+ D++ YV + QKK ER EL+ K+Q E+N E A +++GANLY+KNLDD+ID
Sbjct: 257 MQDYHLPGSDRKLYVSRFQKKCERLAELDRKYQLEKN--ERAKRYEGANLYLKNLDDAID 314
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ L++ F +G++ S KVMR G S+G GFV F P+EA +A+ M GKMV +KPLYV
Sbjct: 315 DDMLRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYV 374
Query: 379 ALAQRKEDRRARLQAQFAQ 397
++AQRKEDR+A + +Q+ Q
Sbjct: 375 SMAQRKEDRKAFIASQYMQ 393
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 180/332 (54%), Gaps = 30/332 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L +V LY+ F+ G +VS ++ D ++ S GYG+V F + A +A++
Sbjct: 105 NVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSK-SKGYGFVQFETEEAARKAIDG 163
Query: 85 LNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGNI 138
N GK I V S R +++ N+F+KN +D + L F+ FG I
Sbjct: 164 TNGVIFEGKRIYVGRFQSRSERSEQAKRTTNCFTNVFVKNFADILDKEKLQQLFAKFGKI 223
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQERDTE 196
+SC V+ D +G+ G+GFV F+N + A+KA++ + L +D+++YV F +K ER E
Sbjct: 224 VSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAE 283
Query: 197 INKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
+++ + N+Y+KNL ++ ++ L++SFGEYG + SA VMR DG+SK
Sbjct: 284 LDRKYQLEKNERAKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRSDDGRSKG 343
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ---NMKEAAD 301
FGFV F+ D+A +A+ A+ GK K YV AQ+K +R+ + Q+ Q +++ A
Sbjct: 344 FGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRIASIRMQAT 403
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
F Y+ D ++ LF+ +G T
Sbjct: 404 SFGSGMTYMS------DSTVVQPLFACYGRGT 429
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAAR 258
+K ++YV +L E L + F G + S V RD +S + +VNFE +DA +
Sbjct: 13 AKKPSLYVGDLHPDVNETVLLEKFSNIGRVLSIRVCRDALTRRSLGYAYVNFERPEDAKQ 72
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E +N + + +Q++ + + N+++KNL+ S++
Sbjct: 73 ALETMNFDIVHGRPIRIMWSQRRP----------------STSRVAAGNVFVKNLNGSVN 116
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+ L FS FG+I SCK+ D S+G GFV F T E A +A+ NG + K +YV
Sbjct: 117 SKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYV 176
Query: 379 ALAQRKEDR 387
Q + +R
Sbjct: 177 GRFQSRSER 185
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ +LY+ +L+ + D L F + G V+S +V R RS G+G+V F E
Sbjct: 296 AKRYEGANLYLKNLDDAIDDDMLRRSFGEYGNVISAKVMRS-DDGRSKGFGFVCFDKPDE 354
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A +A+ + + KP+ V + R
Sbjct: 355 AVKAMTAMKGKMVCTKPLYVSMAQR 379
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/327 (55%), Positives = 249/327 (76%), Gaps = 3/327 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++ + +AL
Sbjct: 56 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKAL 115
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 116 EELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 175
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 176 VAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 235
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ T+++ ++ F +YG ITSA + D + GKS+ FGFVNF + AA+A
Sbjct: 236 NFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKA 295
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN K + ++ YVG+AQKK ERE EL+ Q+E E K+QG NLY+KNL D +DD
Sbjct: 296 VDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDD 355
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISR 346
EKL+ +F+PFG+ITS KVMRD + R
Sbjct: 356 EKLRDMFAPFGTITSAKVMRDTQPVGR 382
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 164/301 (54%), Gaps = 23/301 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS ++ A ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 50 PSAHQNSA-SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 108
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
+ +KA+E+LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 109 DDGEKALEELNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDT 164
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D +G SK +GFV++E ++ A A++A+NG ++K+ +VG K
Sbjct: 165 FAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKK 224
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R E+K F N+Y+KN+D + D++ ++LF +G ITS +
Sbjct: 225 DRMSKFEEMKANF-------------TNVYVKNIDLEVTDDEFRELFEKYGQITSASLAH 271
Query: 340 D-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
D +G SRG GFV F E A++A+ E+N K + LYV AQ+K +R L+ Q+
Sbjct: 272 DNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAA 331
Query: 399 R 399
R
Sbjct: 332 R 332
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 42/51 (82%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P+EA++A+ EMN KM+ KPLYVALAQRK+ R+++L+A
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEA 490
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
GKSK FGFV F N D+A +AV +N K + K YV AQ+K R+ +L+
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLE 489
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/366 (53%), Positives = 267/366 (72%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +A
Sbjct: 6 KYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG IL
Sbjct: 66 KALDTMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G SKGY FV F N+ +A +AIE++NG LL D +V+VG F +++R+ E+ N
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 199 K-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K S+FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+F+N + A
Sbjct: 185 KASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQ 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK + + +VG+AQKK ER+ ELK FEQ +E K QG LYIKNLDD+I
Sbjct: 245 KAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKNLDDTI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FS FGSI+ KVM++ G S+G G + FS+PEEA++A+ EMNG+++ SKPL
Sbjct: 305 DDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLN 363
Query: 378 VALAQR 383
+AL+Q+
Sbjct: 364 IALSQK 369
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 11 SLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + KS NV++KNL S + L + F +G I S
Sbjct: 71 MNFDMIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK D + +VG+ + + +RE EL+++
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+L+++FS +G S KVM DPSG S+G GFV
Sbjct: 186 --------ASEF--TNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F E A +A+ EMNGK + + ++V AQ+K +R+A L+ F Q +
Sbjct: 236 SFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQK 283
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAA 257
K + ++YV +LS TE+ L K F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD GK+ + S+R+ L+ K N++IKNLD
Sbjct: 66 KALDTMN---FD---MIKGKSIRLMWSQRDACLR------------KSGIGNVFIKNLDR 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G S+G FV F A RA+ EMNGK++
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKDCK 166
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPV 401
++V + ++DR A L+ + ++ V
Sbjct: 167 VFVGRFKNRKDREAELRNKASEFTNV 192
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/373 (51%), Positives = 271/373 (72%), Gaps = 3/373 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ V++ +L D+F+ MG +VSVR+CRD + +SL Y YVNF +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDASKALAC 89
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GKP+R+M+SHRDP RK+G N+F+KNLD +I+ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ NG+SK +GFVQFD+++SA A+ LN +L+ K+++V F++K ER ++KFTN
Sbjct: 150 EE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNL E TE+ ++ F E+G + + V+M+DG+GKS+ FGFVNFE+ D+A +AVEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K+ +VG+AQKK+ER+ LKH+ E + K + +NLY+KNLD S+DD+KL++
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G ITS KVMR SG+S+G GFV FST EEA +AL +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 385 EDRRARLQAQFAQ 397
EDR+ R+ + AQ
Sbjct: 388 EDRQ-RIPMKQAQ 399
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 156/279 (55%), Gaps = 17/279 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +L+ ++ + L D+F + G ++S +V + +S +G+V F + A A
Sbjct: 115 GLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAA 172
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L LN T L+GK + V R + ++ N+++KNL + + + D FS FG
Sbjct: 173 LNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGK 232
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---- 193
+ + + D NG+S+G+GFV F++ + A+KA+E LNG +L K+++VG +K ER
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELL 292
Query: 194 -------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+ I K K +N+YVKNL S ++ LQ+ F G ITSA VMR G SK FG
Sbjct: 293 KHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFG 352
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
FV F S++A +A+ LNG + Y+ AQ+K +R+
Sbjct: 353 FVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQ 391
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEAS 360
+ A LY+ +LD + + +L +FS G + S ++ RD SG S +V F P +AS
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDAS 84
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+AL +N ++ KP+ + + R
Sbjct: 85 KALACLNHTKLMGKPMRIMWSHR 107
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/407 (48%), Positives = 268/407 (65%), Gaps = 46/407 (11%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL VT++ L++ F+ G ++S+RVCRD+ T RSLGY YVNF +A R
Sbjct: 8 YPMASLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQQPADAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSG------------------------------ 97
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
V D NG KGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 98 --VVCDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREAELGAR 154
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 155 AKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 214
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD ID
Sbjct: 215 AVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 274
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 275 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY------PPGAW 419
ALAQRKE+R+A L + Q MAS A P+ PP A+
Sbjct: 334 ALAQRKEERQAHLTNLYMQ----RMASVRAVPNPLINPYQPAPPSAY 376
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 119/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 152 GARAKEF--TNVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++++N LNGK I V + + D R G N+++K
Sbjct: 209 HEDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN+Y++ ++
Sbjct: 327 ATKPLYVALAQRKEER-----QAHLTNLYMQRMA 355
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M + + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSTPSYPMASLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/368 (51%), Positives = 269/368 (73%), Gaps = 2/368 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ V++ +L D+F+ MG +VSVR+CRD + +SL Y YVNF + +A++AL
Sbjct: 30 ALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALAC 89
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GKP+R+M+SHRDP RK+G N+F+KNLD +I+ +L D F FGNILSCKVA
Sbjct: 90 LNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVA 149
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ NG+SK +GFVQFD+++SA A+ LN +L+ K+++V F++K ER ++KFTN
Sbjct: 150 EE-NGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTN 208
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VYVKNL E TE+ ++ F E+G + + V+M+DG+GKS+ FGFVNFE+ D+A +AVEALN
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALN 268
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K+ +VG+AQKK+ER+ LKH+ E + K + +NLY+KNLD S+DD+KL++
Sbjct: 269 GAMLGSKKLFVGRAQKKAERQELLKHEKEM-VNCNIGKEKASNLYVKNLDASVDDDKLQE 327
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G ITS KVMR SG+S+G GFV FST EEA +AL +NG ++ + LY+A+AQRK
Sbjct: 328 HFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRK 387
Query: 385 EDRRARLQ 392
EDR+ L+
Sbjct: 388 EDRQRVLR 395
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 158/283 (55%), Gaps = 17/283 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V +L+ ++ + L D+F + G ++S +V + +S +G+V F + A A
Sbjct: 115 GLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEE--NGKSKCFGFVQFDSDDSATAA 172
Query: 82 LEMLNFTPLNGKPI----RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L LN T L+GK + V R + ++ N+++KNL + + + D FS FG
Sbjct: 173 LNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGK 232
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---- 193
+ + + D NG+S+G+GFV F++ + A+KA+E LNG +L K+++VG +K ER
Sbjct: 233 VGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELL 292
Query: 194 -------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+ I K K +N+YVKNL S ++ LQ+ F G ITSA VMR G SK FG
Sbjct: 293 KHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFG 352
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
FV F S++A +A+ LNG + Y+ AQ+K +R+ L+
Sbjct: 353 FVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLR 395
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A LY+ +LD + + +L +FS G + S ++ RD SG S +V F P +AS+AL
Sbjct: 29 AALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALA 88
Query: 365 EMNGKMVVSKPLYVALAQR 383
+N ++ KP+ + + R
Sbjct: 89 CLNHTKLMGKPMRIMWSHR 107
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/327 (55%), Positives = 251/327 (76%), Gaps = 3/327 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
ANAN + SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A
Sbjct: 46 ANANP-NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 104
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + GKP R+M+S RDP+LRK+G GNIFIKNLD AID+KALHDTF+AF
Sbjct: 105 NDGERALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAF 164
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+GYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R +
Sbjct: 165 GNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMS 224
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+YVKN+ TT+++ ++ F +YG ITSA + RD +GK + FGFVN+
Sbjct: 225 KFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRH 284
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AV+ LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+ G NLY+KNL
Sbjct: 285 EDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNL 344
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD 340
D IDDE+L+++F +GSITS KVMRD
Sbjct: 345 ADDIDDEELRKVFEAYGSITSAKVMRD 371
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++
Sbjct: 45 PANANPNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSA 104
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E+LN L+ K + +RD + K+ N+++KNL + + L +
Sbjct: 105 NDGERALEELNYTLIKGKPCRI----MWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDT 160
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G S+ +GFV++E ++ A A++++NG ++K+ +VG K
Sbjct: 161 FAAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKK 220
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R +FE+ K N+Y+KN+D D++ ++LF +G ITS + RD
Sbjct: 221 DR----MSKFEEM------KANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE 270
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G RG GFV + E+A++A+ E+N S+ LYV AQ+K +R L+ Q+ R
Sbjct: 271 GKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQR 327
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 162/343 (47%), Gaps = 78/343 (22%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+A + + L+D F G ++S +V +D S S GYG+V++ A+ A A
Sbjct: 139 GHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGG-SRGYGFVHYETAEAANAA 197
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN+D + F
Sbjct: 198 IKSVNGMLLNEK--KVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFE 255
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G I S +A D G+ +G+GFV + E A KA+++LN + +++YVG +K ER
Sbjct: 256 KYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHER 315
Query: 194 DTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR----- 236
+ E+ + +K+ N+YVKNL++ +E+L+K F YG+ITSA VMR
Sbjct: 316 EEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKVMRDTTPA 375
Query: 237 ------------DGD--------------------------------------GKSKCFG 246
DG+ GKSK FG
Sbjct: 376 DQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEELTKKLDTVTIGGEKKVLGKSKGFG 435
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
FV F N D+A +AV LN K K YV AQ+K R+ +L+
Sbjct: 436 FVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLE 478
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 5/78 (6%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF-----AQ 397
G S+G GFV FS P+EA++A+ E+N KM+ KPLYVALAQRKE R+++L+A +
Sbjct: 429 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASIQARNQVR 488
Query: 398 MRPVAMASTVAPRMPMYP 415
M+ A A + P+ M P
Sbjct: 489 MQQQATAGGIPPQAFMQP 506
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L ++ D +L +F G + S +V RD + + NA+E +
Sbjct: 337 VNLYVKNLADDIDDEELRKVFEAYGSITSAKVMRDTTPADQV-------ENAEEEKKE-- 387
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+G+ + +K K LD T +L
Sbjct: 388 -------DGENEAESSEEKKEDEKKEDGTEELTKKLDTV--------TIGGEKKVL---- 428
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ +LN +++ K +YV RK+ R +++ S
Sbjct: 429 -----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEAS 480
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/367 (52%), Positives = 267/367 (72%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +Q+R+ E+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAEL 182
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTN+Y+KN + ++ L++ F +YG S VM D GKSK FGFV+F + +
Sbjct: 183 QNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + + +VG+AQKK+ER+ ELK FEQ +E + QG LYIKNLDD
Sbjct: 243 AQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+PEEA+RA+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATRAMTEMNGRILGSKP 361
Query: 376 LYVALAQ 382
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + K + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDTIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE EL+++
Sbjct: 127 SKVMSDDQG-SRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A++F N+YIKN D +DD++L+++FS +G S KVM D +G S+G GFV
Sbjct: 186 --------ANEF--TNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNGK + + L+V AQ+K +R+A L+ F Q +
Sbjct: 236 SFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQQK 283
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/368 (52%), Positives = 270/368 (73%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAEL 182
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L++ F +YG S VMRD GKSK FGFV+F++ +
Sbjct: 183 QNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK + + +VG+AQKK+ER+ ELK FEQ +E + QG LYIKNLD+
Sbjct: 243 AKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDE 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+PEEA++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 168/288 (58%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ K + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE EL+++
Sbjct: 127 SKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A++F N+YIKN D +DDE+LK++FS +G S KVMRD SG S+G GFV
Sbjct: 186 --------ANEF--TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNGK + + L+V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/403 (47%), Positives = 280/403 (69%), Gaps = 8/403 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL VT++ LY+ F+ G ++SVRVCRD + RSLGYGYVNF ++A
Sbjct: 16 FPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGH 75
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL +NF L+GKP+R+M+ HRDPSLR+SG GN+F+ +LD +ID+K L+D F+ FG ILS
Sbjct: 76 ALNTMNFDVLHGKPVRIMWCHRDPSLRRSGVGNVFVNHLDASIDNKELYDLFAGFGTILS 135
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--IN 198
CKV +D NG KG+GFV F+ E+A KAI+++NG L+ +++V+VG F R +R+ E
Sbjct: 136 CKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAK 194
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVYVKN ++ TT+E L + F +YG ++S +M D GKSK FGF+ FE DA R
Sbjct: 195 MEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKR 254
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
A+E +NGK+F ++ YV +AQKK ERE EL+ + E+ + K+ G +L++KNL +S D
Sbjct: 255 AIEEVNGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTD 314
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE L+++F+PFG++TS KV+ G +G GFV+FS+ EEA +A+ EM+GKM+ ++PLYV
Sbjct: 315 DEHLRKIFAPFGTVTSAKVIVK-GGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYV 373
Query: 379 ALAQRKEDRRARLQAQFAQMR--PVAMAST--VAPRMPMYPPG 417
+ A+ K++RRA + + + + P ST +P P P G
Sbjct: 374 SYARYKQERRAYFASYYGKKKASPAKSPSTPDTSPSQPASPDG 416
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 159/285 (55%), Gaps = 16/285 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P + + ++++ +L + L++ FSA G ILS +V D L+ +S GYG+V F
Sbjct: 11 PGMPGFPSASLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRP 70
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A A+ +N +L+ K V + RD + +S NV+V +L S ++L
Sbjct: 71 EDAGHALNTMNFDVLHGKPVRIMWC----HRDPSLRRSGVGNVFVNHLDASIDNKELYDL 126
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +GTI S V+ D +G K GFV+FE + A +A++ +NG +++ +VG+ ++ +
Sbjct: 127 FAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPN 185
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+RE E + + EQ N+Y+KN D DE L ++FS +G ++S K+M D S
Sbjct: 186 QREEERRAKMEQF----------TNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDS 235
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
G S+G GF+ F +A RA+ E+NGK + +YV+ AQ+K++R
Sbjct: 236 GKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKER 280
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/392 (49%), Positives = 264/392 (67%), Gaps = 6/392 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL +V + L+D F+++G V SVRVCRD +T RSL YGYVN+ + +A AL+ L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N + + KPIRVM+S+RDP R+SG GNIF+KNL+ ++D+ +L + FS FG++LSCKVA
Sbjct: 104 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAK 163
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
+ +G S+GYGFVQF ++ESA +AI LNG L ND++++V F++K ER N KFTN+
Sbjct: 164 NEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSAN-NDDKFTNL 222
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
Y+K+L + TEE ++ F ++G I S +MR DG S FGFV+F+N + A +A E ++G
Sbjct: 223 YMKHLDDDITEELVKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHG 282
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
K YV +AQKK ER+ L+ E+ E K +N+YIKN+ D +DD+ L+
Sbjct: 283 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRAR 342
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F+ +G+ITS KVMRD GISRG GFV +STPEEA + M G M KPLYVA+ QRKE
Sbjct: 343 FAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKE 402
Query: 386 DRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
+RRA+LQ FAQ +A V P M P G
Sbjct: 403 ERRAKLQQHFAQ-----LARMVGPTNSMIPTG 429
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LY+ L+ ++T+ + F+Q G +VSV++ R SLG+G+V+F N + A +A E
Sbjct: 220 TNLYMKHLDDDITEELVKLKFSQFGPIVSVKIMRR-PDGSSLGFGFVSFQNPESAIKAQE 278
Query: 84 MLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
++ L K + R+ R+ + KS N++IKN+ +D A
Sbjct: 279 TMHGMLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDA 338
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L F+ +GNI S KV D G S+G+GFV + E A+ + + G++ K +YV F
Sbjct: 339 LRARFAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIF 398
Query: 188 LRKQERDTEINK 199
RK+ER ++ +
Sbjct: 399 QRKEERRAKLQQ 410
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/318 (56%), Positives = 245/318 (77%), Gaps = 2/318 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++++ +AL
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 107 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER ++ K+
Sbjct: 167 VAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ T+ED ++ F ++G ITSA + RD GKS+ FGFVN+ + AA AV
Sbjct: 227 NFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN +F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL+D +DDE
Sbjct: 287 DHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 321 KLKQLFSPFGSITSCKVM 338
KL+ +F+PFG+ITS KV+
Sbjct: 347 KLRDMFTPFGTITSAKVI 364
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 154/290 (53%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + DE ++LF G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFG 272
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV + E A+ A+ +N + LYV AQ+K +R L+ Q+ R
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 162/341 (47%), Gaps = 76/341 (22%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 134 GQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLR--------KSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN+D + + + F
Sbjct: 193 IKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFE 250
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
G+I S +A D G+S+G+GFV + E+A A++ LN + +++YVG +K ER
Sbjct: 251 KHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHER 310
Query: 194 DTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRD--- 237
+ E+ K SK+ N+Y+KNL++ +E L+ F +GTITSA V++RD
Sbjct: 311 EEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEK 370
Query: 238 --------------------------------------GD-----------GKSKCFGFV 248
GD GKSK FGFV
Sbjct: 371 KDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFV 430
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
F N D+A +AV +N K + K YV AQ+K R+ +L+
Sbjct: 431 CFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLE 471
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVA 402
G S+G GFV FS P+EA++A+ EMN KM+ KPLYVALAQRK+ R+ +L+A +
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQLR 481
Query: 403 MAST------------VAP-RMP-MYPPGA 418
M +AP + P MYPPGA
Sbjct: 482 MQQQQQQQFGGIPQMFIAPGQQPMMYPPGA 511
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/402 (48%), Positives = 268/402 (66%), Gaps = 7/402 (1%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G NA +LYVGDL + + L+D F+++G V SVRVCRD +T SL YGYVN+ +
Sbjct: 96 GTNAT---VPALYVGDLHEDAQEEHLFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFS 152
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+A ALE +N + + KPIRVM+S+RDP R+SG GN+F+KNL+ ID+ L + FS
Sbjct: 153 QADAMTALEKMNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDHIDNVILQELFSK 212
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG+ILSCKVA + +G S+GYGFVQF +ESA AIE LN +Q++V HF++K ER
Sbjct: 213 FGDILSCKVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERS 272
Query: 195 TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
N K+TN+Y+KNL + TEE ++ F ++G + S +M+ DG SK FGFV+F++ D
Sbjct: 273 AN-NDDKYTNLYMKNLDDDMTEELIKLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPD 331
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A +A EA+NG K YV +AQKK+ER+ L+ E+ E K G+N+YIKN+
Sbjct: 332 SAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNIS 391
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D +DDE L++ F FG+ITS K+MRD GIS+G GFV ++TP+EA A+ M G M K
Sbjct: 392 DRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDK 451
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM-YP 415
PLYVA+AQRKEDR+ARL+ +FA++ M +P +P YP
Sbjct: 452 PLYVAIAQRKEDRKARLEQRFAEL--ATMVGAASPVIPTGYP 491
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/398 (51%), Positives = 277/398 (69%), Gaps = 6/398 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVG+L VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N Q+A
Sbjct: 33 FNSASLYVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEA 92
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G+P R+M+S RDPSLRKSG GNIF+KNLDKAID KAL+DTFS FG ILS
Sbjct: 93 ALECLNYIEIKGQPARIMWSERDPSLRKSGTGNIFVKNLDKAIDTKALYDTFSHFGTILS 152
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFV + EESA++AIEK+NGML+ + QV V FLR+ ER + +
Sbjct: 153 CKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERTSTVGDV 212
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YV+N ++ TE+DL ++F +YG ITS ++ D G+ F FVNF +++ A A+
Sbjct: 213 -FTNLYVRNFPDTWTEDDLHQTFSKYGEITSLLLKSDDKGRR--FAFVNFVDTNMAKAAM 269
Query: 261 EALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
E NG KF+ E V + K+ R LK Q++ N ++ +KF G NLYIKNLDD D
Sbjct: 270 EGENGVKFESVEEPMMVCQHMDKARRYAMLKAQYDSNAQDQRNKFMGVNLYIKNLDDDFD 329
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ L+ LF +G++TS KVMRD +G+SRG GFV FS P+EA++A+ M+ K+V +KPLYV
Sbjct: 330 DDGLRDLFKQYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYV 389
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
LA+++E R +R+Q + Q + +P+YPP
Sbjct: 390 GLAEKREQRASRMQQRNRQNDMMQYGDRPG-YVPLYPP 426
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/409 (48%), Positives = 271/409 (66%), Gaps = 47/409 (11%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F++ G ++S+RVCRD+ TRRS Y YVNF + ++A R
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAER 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLR+SG
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRRSG------------------------------ 97
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-K 199
V D NG SKGYGFV F+ E+A++AIEK+NG LLND++V+VG F ++ER+ E+ K
Sbjct: 98 --VVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK 154
Query: 200 SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+K F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 155 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 214
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K YVG+AQKK ER+ ELK +FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 215 AVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDID 274
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 275 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVA-------PRMPMYPPGAWI 420
ALAQRKE+R+A L ++ Q MAS A P P P G ++
Sbjct: 334 ALAQRKEERQAHLTNEYMQR----MASVRAVPNPVINPYQPAPPSGYFM 378
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 117/213 (54%), Gaps = 25/213 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F ++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 152 GAKAKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKN 118
++A +A++ +N LNGK I V + R L++ N+++KN
Sbjct: 209 HEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKN 268
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 269 LDDDIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 327
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 328 TKPLYVALAQRKEER-----QAHLTNEYMQRMA 355
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FS G I S +V RD I+R S +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRD--VITRRSSSYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P++A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQHPKDAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 273/372 (73%), Gaps = 21/372 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+ RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVI--RVCRDVITRRSLGYAYVNFQQPADAERALDT 60
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + KPIR+M+S RDPSLR+SG GN+FIKNLD+A +KA++DTFSAFGNILSCKVA
Sbjct: 61 MNL--VRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA--NKAIYDTFSAFGNILSCKVA 116
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FT 203
TD G SKGYGFV EE+A +I+K+NGMLLN K+VYVG F+ ++E++ K+K FT
Sbjct: 117 TDEKGNSKGYGFVH--TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQE---EKAKLFT 171
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKN +E +E L++ F YG IT VM DGKSK FGFV FE ++ A AV+AL
Sbjct: 172 NVYVKNFTEDFDDEKLKEFFEPYGKITK--VMSKEDGKSKGFGFVAFETTEAAEAAVQAL 229
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NGK + K YV +AQKK+ER+ ELK +FE+ +K+ +F G NLY+KNLDD+IDD++L+
Sbjct: 230 NGKG-EGKSLYVARAQKKAERQQELKRKFEE-LKQKRHEF-GVNLYVKNLDDTIDDDRLR 286
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FSP+G+ITS KV D G S+G GFV F+ EA+ A+ E+NG++V S LYVALAQR
Sbjct: 287 IAFSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVVGS--LYVALAQR 342
Query: 384 KEDRRARLQAQF 395
KE+R+A L +Q+
Sbjct: 343 KEERKADLASQY 354
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 157/288 (54%), Gaps = 30/288 (10%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + ++ L D FS+ G ++ +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVI--RVCRDVITRRSLGYAYVNFQQPADAERALDT 60
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I S
Sbjct: 61 MN--LVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAN--KAIYDTFSAFGNILS 112
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+ E + A +++ +NG + K+ YVGK + E+E
Sbjct: 113 CKVATDEKGNSKGYGFVHTEEA--ANTSIDKVNGMLLNGKKVYVGKFIPRKEQE------ 164
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G IT KVM G S+G GFV
Sbjct: 165 ------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKIT--KVMSKEDGKSKGFGFV 214
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
AF T E A A+ +NGK K LYVA AQ+K +R+ L+ +F +++
Sbjct: 215 AFETTEAAEAAVQALNGKGE-GKSLYVARAQKKAERQQELKRKFEELK 261
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 154/288 (53%), Gaps = 26/288 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + +YD F+ G ++S +V D S GYG+V+ A A +
Sbjct: 84 GVGNVFIKNLDR--ANKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHTEEA--ANTS 138
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
++ +N LNGK + V ++ + N+++KN + D + L + F +G I
Sbjct: 139 IDKVNGMLLNGKKVYVGKFIPRKEQEEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI- 197
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
KV + +G+SKG+GFV F+ E+A+ A++ LNG K +YV +K ER E+ K
Sbjct: 198 -TKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKG-EGKSLYVARAQKKAERQQEL-K 254
Query: 200 SKF-----------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
KF N+YVKNL ++ ++ L+ +F YG ITSA V D +G+SK FGFV
Sbjct: 255 RKFEELKQKRHEFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKV--DEEGRSKGFGFV 312
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
F +A AV LNG+ YV AQ+K ER+ +L Q+ ++M
Sbjct: 313 CFNPESEATCAVTELNGRVVGS--LYVALAQRKEERKADLASQYMRHM 358
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A T+ L+ F+ G V+S+R+CRDL+TR+ LGY YVNF +
Sbjct: 4 AAKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + G+PIR+M+S RD LR+SG GN+F+KNLD+++D+K L++ FS FG
Sbjct: 64 AQRALDTMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F ++ +A AIE++NG ++ND+ V+V F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN + +E LQ F YG S VM D GKSK FGFV+FE+ +
Sbjct: 183 RSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVE +NGK + + +VG+AQKK ER+ ELKH FEQ KE + QG LY+KNLDD
Sbjct: 243 AKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
++DDE+L++ FS FGSIT KVM++ G SRG G + FS+PEEA++AL EMNG+++ SK
Sbjct: 303 TVDDEQLRKEFSSFGSITRVKVMKE-EGYSRGFGLICFSSPEEAAKALTEMNGRVLGSKA 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 162/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L L FSA G +LS ++ DL Q GY +V F AQ+A++
Sbjct: 11 SLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + L +RD + +S NV+VKNL S + L + F +G I S
Sbjct: 71 MNFDVIKGRPIR----LMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F++ A A+E +NGK +D+ +V + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRSR 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+L+ +FS +G S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A RA+ EMNGK + + ++V AQ+K +R+A L+ F QM+
Sbjct: 236 SFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMK 283
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 20/205 (9%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD + + +VNF DA
Sbjct: 6 KYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDS 316
RA++ +N FD V K R + L + ++A + G N+++KNLD S
Sbjct: 66 RALDTMN---FD-----VIKG-----RPIRLMW----SQRDACLRRSGIGNVFVKNLDRS 108
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+D++ L + FS FG I S KVM D G S+G FV F + A+ A+ +MNGK++ +P+
Sbjct: 109 VDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQMNGKVINDRPV 167
Query: 377 YVALAQRKEDRRARLQAQFAQMRPV 401
+VA + ++DR A L+++ ++ V
Sbjct: 168 FVAPFKPRKDREAELRSRASEFTNV 192
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 248/321 (77%), Gaps = 3/321 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN+++A + RAL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A +AI+ +NGMLLN+K+V+VGH + K++R ++ K+
Sbjct: 180 VAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN+ T+++ ++ F +YG ITSA + D + GKS+ FGFVN+ N +DA +A
Sbjct: 240 NFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN F ++ YVG+AQKK ERE EL+ Q+E +E + K+QG NLY+KNL D +DD
Sbjct: 300 VDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD 340
E+L+++F +G+ITS KVMRD
Sbjct: 360 EELRKIFEAYGAITSAKVMRD 380
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/415 (30%), Positives = 203/415 (48%), Gaps = 71/415 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V D S GYG+V++ A+ A++A
Sbjct: 147 GHGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAVD-ELGNSKGYGFVHYETAEAASQA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN++ + + F
Sbjct: 206 IKSVNGMLLNEK--KVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFE 263
Query: 134 AFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+G I S +A D G+S+G+GFV + N E A KA+++LN + +++YVG +K E
Sbjct: 264 KYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHE 323
Query: 193 RDTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
R+ E+ K +K+ N+YVKNL++ +E+L+K F YG ITSA VMRD
Sbjct: 324 REEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDVTP 383
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
K +DD + V+ G+ +DK + ++ E++++
Sbjct: 384 LDKAETDAKENKTDDKEKQVD---GEPTEDKNGEEQEDMEELEKKMDTV----------- 429
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+I EK KV+ G S+G GFV FS P+EA+
Sbjct: 430 ---------------TIGGEK--------------KVL----GKSKGFGFVCFSNPDEAT 456
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
+A+ E+N KM+ KPLYVALAQRKE R+ +L+A V M PM P
Sbjct: 457 KAVTELNQKMIHGKPLYVALAQRKEVRKTQLEASIQARNQVRMQQQATAGGPMAP 511
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV L S TE L + F G + S V RD +S + +VN+ +++D RA+E L
Sbjct: 63 LYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEEL 122
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + +Q+ A K N++IKNLD +ID++ L
Sbjct: 123 NYTLIKGRPCRIMWSQRDP----------------ALRKTGHGNVFIKNLDGAIDNKALH 166
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
F+ FG+I SCKV D G S+G GFV + T E AS+A+ +NG ++ K ++V
Sbjct: 167 DTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIP 226
Query: 384 KEDRRARLQ 392
K+DR ++ +
Sbjct: 227 KKDRMSKFE 235
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +LYV +L V D +L +F G + S +V RD++ A+ A
Sbjct: 342 KYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKVMRDVTP----------LDKAETDA 391
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ N T K + +P+ K+G ++ L+K +D T +L
Sbjct: 392 KE----NKTDDKEKQV-----DGEPTEDKNGEEQEDMEELEKKMDTV----TIGGEKKVL 438
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
G+SKG+GFV F N + A KA+ +LN +++ K +YV RK+ R T++
Sbjct: 439 ---------GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKTQLEA 489
Query: 200 S 200
S
Sbjct: 490 S 490
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/434 (46%), Positives = 272/434 (62%), Gaps = 35/434 (8%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G F + SLYVGDL VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N
Sbjct: 32 GNEGQLFPSASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHN 91
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+A RALE L + + GK +R+M+SHRDPSLRKSGAGN+FIKN+D++ID KAL+D FS
Sbjct: 92 VNDARRALEALKYNEICGKQVRIMWSHRDPSLRKSGAGNVFIKNIDESIDTKALYDAFSP 151
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
+G ILSCKVATD G+S+GYGFV FD E +A +AI NGM L +K+++V F+R+ ER
Sbjct: 152 YGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSERV 211
Query: 195 TEIN-----KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+ KFTN+YV+N E+ EE L+++F +G ITS ++ D G+ F F+N
Sbjct: 212 SSTKLEDGVDEKFTNLYVRNFPENWNEEILKENFSPFGEITSMMMKSDPLGRK--FAFIN 269
Query: 250 FENSDDAARAVEALNGKKFD----DKEWYVGKAQKKSE-------------RELELKHQF 292
+ + A A+E +NGK F DK G+ KSE R LK ++
Sbjct: 270 YAENSMAKAAIETMNGKDFSIKSGDKSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKY 329
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
+ E K+QG NLYIKNLDDSI+D +L++LF FG ITSCKVM D G S G GFV
Sbjct: 330 DSMHAENKSKYQGVNLYIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVC 389
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF-----------AQMRPV 401
F +PE+A+ A+ EM+ K+V +KPLYV LA+++E R RLQ ++ + P
Sbjct: 390 FVSPEDATHAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQMRYKVGHNRDGMPMGMLPPH 449
Query: 402 AMASTVAPRMPMYP 415
M + +PM P
Sbjct: 450 GMMPPMHMGVPMMP 463
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/392 (48%), Positives = 263/392 (67%), Gaps = 6/392 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL +V + L++ F+++G V SVRVCRD +T RSL YGYVN+ + +A AL+ L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N + + KPIRVM+S+RDP R+SG GNIF+KNL ++D+ +L + FS FG++LSCKVA
Sbjct: 183 NHSLVLDKPIRVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAK 242
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
+ +G S+GYGFVQF ++ESA +AI LNG L ND++++V F++K ER N KFTN+
Sbjct: 243 NEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSAN-NDDKFTNL 301
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
Y+K+L + TEE ++ F ++G+I S +M+ DG S FGFV+F+N + A +A +NG
Sbjct: 302 YMKHLDDDITEELVKLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNG 361
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
K YV +AQKK ER+ L+ E+ E + +N+YIKN+ D +DD+ L+
Sbjct: 362 MLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRAR 421
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385
F FG+ITS KVMRD GISRG GFV +STPEEA A+ M G M KPLYVA+ QRKE
Sbjct: 422 FVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKE 481
Query: 386 DRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
+R+A+LQ FAQ +A V P M P G
Sbjct: 482 ERKAKLQQHFAQ-----LARMVGPANSMIPTG 508
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 17/192 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LY+ L+ ++T+ + F+Q G +VSV++ + SLG+G+V+F N + A +A
Sbjct: 299 TNLYMKHLDDDITEELVKLKFSQFGSIVSVKIMKR-PDGSSLGFGFVSFQNPESAIKAQS 357
Query: 84 MLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
+N L K + R+ R+ + + N++IKN+ +D A
Sbjct: 358 TMNGMLLGSKALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDA 417
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L F FGNI S KV D G S+G+GFV + E A+ A+ + G++ K +YV F
Sbjct: 418 LRARFVEFGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIF 477
Query: 188 LRKQERDTEINK 199
RK+ER ++ +
Sbjct: 478 QRKEERKAKLQQ 489
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/384 (48%), Positives = 254/384 (66%), Gaps = 36/384 (9%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKP+R+M+S RDPSLRK
Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKX-------------------------- 96
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+
Sbjct: 97 -------XXXXXXXXSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 149
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE
Sbjct: 150 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 209
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 210 EDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 329 KPLYVALAQRKEERQAHLTNQYMQ 352
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 152 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 208
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +N LNGK I V + + D R G N+++K
Sbjct: 209 HEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 267
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 268 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 326
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 327 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 355
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/319 (57%), Positives = 247/319 (77%), Gaps = 2/319 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+AQ+AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 174 VAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN+S T+++ ++ F +G +TS+ + R+ DGKS+ FGFVNF + AA+AV
Sbjct: 234 NFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAV 293
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K +E YVG+AQKK ERE EL+ +E E A K+QG NLYIKNLDD +DD+
Sbjct: 294 EELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDD 353
Query: 321 KLKQLFSPFGSITSCKVMR 339
KL+ +F+ FG ITS KVMR
Sbjct: 354 KLRIMFAEFGPITSAKVMR 372
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 158/293 (53%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G + S +V D + +S GY +V +++ +KA+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKAL 113
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 114 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 169
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A +A++ +NG ++K+ YVG K +R+
Sbjct: 170 LSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 229
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ + D++ ++LF G +TS + R+ G SR
Sbjct: 230 EMKANF-------------TNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSR 276
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E A++A+ E+N K + + LYV AQ+K +R L+ + R
Sbjct: 277 GFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSYEAAR 329
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 38/45 (84%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+++L+A
Sbjct: 430 GFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEA 474
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/413 (46%), Positives = 274/413 (66%), Gaps = 7/413 (1%)
Query: 4 VQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
V+ + GG NA +LYVGDL +V + L ++F ++G + SVRVCRD +T
Sbjct: 21 VEVEAVPAVAGGLNAT---VPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSN 77
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
SL YGYVN+ + +AA ALE LN + + KPIRVM+S+RDP R+SG GN+F+KNL+ +
Sbjct: 78 SLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLV 137
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+ +L + F FG+ILSCKVA + +G S+GYGFVQF +ESA +I+ LN +Q++
Sbjct: 138 DNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLH 197
Query: 184 VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
V F++K ER T N K+TN+Y+KNL + TEE ++ F +YG + S +M+ DG SK
Sbjct: 198 VATFIKKSERSTN-NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSK 256
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV+F+N + A RA E++NG K YV +AQKK+ER+ L+ E+ E K
Sbjct: 257 GFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKS 316
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G+N+YIKN++D + D+ L++ F+ FG+ITS K+MRD GIS+G GFV ++TPEEA A+
Sbjct: 317 NGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAV 376
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM-YP 415
M G M KPLYVA+AQRKE+RRA+L+ +FA++ M +P +P YP
Sbjct: 377 SNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAEL--ATMVGATSPVIPTGYP 427
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/413 (46%), Positives = 274/413 (66%), Gaps = 7/413 (1%)
Query: 4 VQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
V+ + GG NA +LYVGDL +V + L ++F ++G + SVRVCRD +T
Sbjct: 21 VEVEAVPAAAGGLNAT---VPALYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSN 77
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
SL YGYVN+ + +AA ALE LN + + KPIRVM+S+RDP R+SG GN+F+KNL+ +
Sbjct: 78 SLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLV 137
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+ +L + F FG+ILSCKVA + +G S+GYGFVQF +ESA +I+ LN +Q++
Sbjct: 138 DNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLH 197
Query: 184 VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
V F++K ER T N K+TN+Y+KNL + TEE ++ F +YG + S +M+ DG SK
Sbjct: 198 VATFIKKSERSTN-NDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSK 256
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
FGFV+F+N + A RA E++NG K YV +AQKK+ER+ L+ E+ E K
Sbjct: 257 GFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKS 316
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G+N+YIKN++D + D+ L++ F+ FG+ITS K+MRD GIS+G GFV ++TPEEA A+
Sbjct: 317 NGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAV 376
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM-YP 415
M G M KPLYVA+AQRKE+RRA+L+ +FA++ M +P +P YP
Sbjct: 377 SNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAEL--ATMVGATSPVIPTGYP 427
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/368 (52%), Positives = 267/368 (72%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D +G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E
Sbjct: 124 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEF 182
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L + F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 QNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVE +NGK + + +VG+AQKK+ER+ ELK FEQ E + QGA LYIKNLD+
Sbjct: 243 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDE 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ EEA++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQ+
Sbjct: 362 LNIALAQK 369
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ DL +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ K + L +RD + KS NV++KNL S + L + F +G I S
Sbjct: 71 MNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE E +++
Sbjct: 127 SKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+L ++FS +G S KVM D SG S+G GFV
Sbjct: 186 --------AHEF--TNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A RA+ EMNGK + + L+V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 283
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/374 (51%), Positives = 268/374 (71%), Gaps = 4/374 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF + +
Sbjct: 197 AAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVAD 256
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG
Sbjct: 257 AQKALDTMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGK 316
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL + +V+V F +++R++E+
Sbjct: 317 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESEL 375
Query: 198 -NK-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK S+FTNVY+KN + + L++ F +YGT S VM D GKSK FGFV+F + +
Sbjct: 376 KNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEA 435
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +NGK + + +VG+AQKK ER+ ELK FEQ +E + +G LYIKNLDD
Sbjct: 436 AKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDD 495
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ F+ FGSI+ KVM++ G S+G G + FS+ EEA +A+ EMNG+++ SKP
Sbjct: 496 TIDDEKLRKEFASFGSISRVKVMQE-EGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKP 554
Query: 376 LYVALAQRKEDRRA 389
L +ALAQR E+R+
Sbjct: 555 LNIALAQRNEERKT 568
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F + AQKA++
Sbjct: 204 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALDT 263
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 264 MNFDVIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGKILS 319
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NG + +V + + + +RE ELK++
Sbjct: 320 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNK 378
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DD +LK++FS +G+ S KVM D SG S+G GFV
Sbjct: 379 --------ASEF--TNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFV 428
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F++ E A A+ EMNGK + + ++V AQ+K +R+A L+ F Q+R
Sbjct: 429 SFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLR 476
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 25/206 (12%)
Query: 193 RDTEIN---KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFV 248
R E+N K + ++YV +L TE+ L K F G + S + RD +S + +V
Sbjct: 190 RAREMNVAAKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYV 249
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGA 306
NF + DA +A++ +N FD GK+ + S+R+ L+ K
Sbjct: 250 NFLHVADAQKALDTMN---FD---VIKGKSIRLMWSQRDAYLR------------KSGIG 291
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N++IKNLD SID++ L + FS FG I S KVM D G S+G FV F A RA+ EM
Sbjct: 292 NVFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 350
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQ 392
NG ++ + ++V+ + ++DR + L+
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELK 376
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/320 (56%), Positives = 248/320 (77%), Gaps = 2/320 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TE+D ++ F +YG +TS+ + RD +GKS+ FGFVNF + A +AV
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNLDD +DD+
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 321 KLKQLFSPFGSITSCKVMRD 340
KL+++F FGSITS KVMR+
Sbjct: 358 KLREMFKDFGSITSAKVMRE 377
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 155/293 (52%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G + S +V D + +S GY +V ++ +KA+
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 118 EELNYTIIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 173
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 174 LSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFE 233
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ + ++ +QLF +G +TS + RD G SR
Sbjct: 234 EMKANF-------------TNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSR 280
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E A +A+ E+N K + LYV AQ+K +R L+ + R
Sbjct: 281 GFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAAR 333
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
G S+G GFV FS P++A++A+ EMN +M KPLYVALAQRK+ R+++L+A Q+R
Sbjct: 434 GKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQLR 493
Query: 400 PVAMASTVA--PRMPMYPPGAWIWLSAAACSWYEARWGSHAKF 440
+ A+ VA P+ M PP ++ + Y + G F
Sbjct: 494 -MQQAAAVAGMPQQYMQPP---VYFAPGQQPGYMPQGGRGVPF 532
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 258/367 (70%), Gaps = 7/367 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q+A
Sbjct: 24 FSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQE 83
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G P R+M+S+RDPSLR+SGAGNIF+KNLDK+ID K+L+DTFS FG ILS
Sbjct: 84 ALENLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILS 143
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +G SK YGFV ++NEESA++AIEK+NGML+ K+V V FLRKQ+R++E
Sbjct: 144 CKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDRESE---E 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YV+N EE L++ +YG ITS ++ D G+ F FVN++ + A V
Sbjct: 201 VFTNLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKGRR--FAFVNYKEPEVAKEVV 258
Query: 261 EALNGKKFDD--KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
LN K ++ + V Q K++R+ L+ QF + DK +NLYIKNLDDS D
Sbjct: 259 NTLNDLKLEESSEPLLVCPHQDKAKRQNLLRAQFNNSTMAQEDKRVTSNLYIKNLDDSFD 318
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE L +LF PFG+ITS KVM D + SRG GFV F+ P+EA++A+ M+ K+V KPLYV
Sbjct: 319 DESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 379 ALAQRKE 385
LA++++
Sbjct: 379 GLAEKRD 385
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 145/304 (47%), Gaps = 30/304 (9%)
Query: 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYG 155
+M RD + S + +++ +L + L++ F+ G + S +V D + +S GY
Sbjct: 14 MMMPMRDTQVFSSAS--LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYA 71
Query: 156 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ--ERDTEINKSKFTNVYVKNLSES 213
+V + + + AQ+A+E LN + + GH R RD + +S N++VKNL +S
Sbjct: 72 YVNYYSTQDAQEALENLNYIEIK------GHPTRIMWSNRDPSLRRSGAGNIFVKNLDKS 125
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V D G SK +GFV++EN + A A+E +NG K
Sbjct: 126 IDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRV 185
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
V +K +RE E + F NLY++N D+E L+Q +G IT
Sbjct: 186 EVAPFLRKQDRESE-------------EVF--TNLYVRNFPADWDEEALRQFLEKYGEIT 230
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRARL 391
S + D G R FV + PE A + +N + S+PL V Q K R+ L
Sbjct: 231 SMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCPHQDKAKRQNLL 288
Query: 392 QAQF 395
+AQF
Sbjct: 289 RAQF 292
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/366 (51%), Positives = 268/366 (73%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL +VT++ L+ F+ +G V+S+R+CRDL TR SLGY YVNF + +A
Sbjct: 6 KYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RAL+ +NF + G+ IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG IL
Sbjct: 66 RALDTMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV D G S+GYGFV F N+ +A +AIE++NG+LL D +++VG F +++R+ E+ N
Sbjct: 126 SSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQN 184
Query: 199 K-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K S+FTN+Y+KN + +E L++ F YG I S VM D GKSK FGFV+F+ + A
Sbjct: 185 KASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAK 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV+ +NG++ ++ +VG+AQKK+ER+ ELK FEQ +E + + +G +Y+KNLD++I
Sbjct: 245 RAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+EKL++ FS FGSI KVM++ G SRG G + FS+PEEA+RA+ EMNG+++ SKP+
Sbjct: 305 DEEKLRKAFSSFGSIIRVKVMQEE-GRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVN 363
Query: 378 VALAQR 383
+ALAQR
Sbjct: 364 IALAQR 369
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 164/286 (57%), Gaps = 16/286 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL + S GY +V F + AQ+A++
Sbjct: 11 SLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDVIQGQSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ +GFV+F+N A RA+E +NG D +VG + + +RE EL+++
Sbjct: 127 SKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDEKLK+ FS +G I S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+F T E A RA+ +NG+ + + ++V AQ+K +R+A L+ F Q
Sbjct: 236 SFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQ 281
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/326 (54%), Positives = 243/326 (74%), Gaps = 3/326 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ+ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMR 339
DDSIDD+KL++ FSP+G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 166/296 (56%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L++LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/370 (48%), Positives = 259/370 (70%), Gaps = 4/370 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL+A VT+ L+ F+ G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 142 AAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLAD 201
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF L G+P+R+M+S RD LRKSG GN+FIKNLD+++D KAL + FSAFG
Sbjct: 202 AQRALDTMNFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGK 261
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G S+GY FV F + +A +AIE +NG L +++VG F +Q R+ E+
Sbjct: 262 ILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAEL 320
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTN+Y+KN + L+ F EYG S VM D G+S+ FGFV+FE+ +
Sbjct: 321 RSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEA 380
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVEALNG++ D + +VG+AQ+K+ER+ EL+ FEQ ++ + QGA LY+KNLDD
Sbjct: 381 ARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDD 440
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
++D+++L++ FS FG+++ K+MR+ G S+G G + FS+ +EA+RAL EMNG+++ SKP
Sbjct: 441 AVDEDRLRREFSGFGAVSRVKIMRE-EGRSKGFGLICFSSADEAARALAEMNGRVLGSKP 499
Query: 376 LYVALAQRKE 385
L +ALAQ +
Sbjct: 500 LSIALAQSRR 509
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 161/286 (56%), Gaps = 16/286 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +LD + AL FSA G +LS ++ DL +S GY +V F AQ+A++
Sbjct: 149 SLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALDT 208
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N +L + + L +RD + KS NV++KNL S ++ L + F +G I S
Sbjct: 209 MNFDVLRGRPLR----LMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILS 264
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ D G S+ + FV+F+ A RA+E +NG + +VG+ Q + RE EL+ +
Sbjct: 265 SKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQAREAELRSR 323
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F NLYIKN +DD +L+ +FS +G S KVM D SG SRG GFV
Sbjct: 324 --------AGEF--TNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFV 373
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+F + E A RA+ +NG+ V +PL+V AQRK +R+A L+ F Q
Sbjct: 374 SFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQ 419
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L+ V + +L F+ G V V++ R+ RS G+G + FS+A EAARAL +
Sbjct: 433 LYVKNLDDAVDEDRLRREFSGFGAVSRVKIMREEG--RSKGFGLICFSSADEAARALAEM 490
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSG 110
N L KP+ + + L+ G
Sbjct: 491 NGRVLGSKPLSIALAQSRRCLQPRG 515
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 257/367 (70%), Gaps = 7/367 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q+A
Sbjct: 24 FSSASLYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEA 83
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G P R+M+S+RDPSLR+SGAGNIF+KNLDK+ID K+L+DTFS FG ILS
Sbjct: 84 ALESLNYIEIKGHPTRIMWSNRDPSLRRSGAGNIFVKNLDKSIDTKSLYDTFSHFGPILS 143
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D +G SK YGFV ++NEESA++AIEK+NGML+ K+V V FLRKQ+R+ E
Sbjct: 144 CKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDREGE---E 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YV+N EE L++ +YG ITS ++ D G+ F FVN++ + A V
Sbjct: 201 VFTNLYVRNFPADWNEEALRQFLEKYGEITSMMLKEDSKGRR--FAFVNYKEPEVAKEVV 258
Query: 261 EALNGKKFDD--KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
LN K D+ + V Q K++R+ L+ QF + DK +NLYIKNLDDS D
Sbjct: 259 NTLNDLKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTSNLYIKNLDDSFD 318
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE L +LF PFG+ITS KVM D + SRG GFV F+ P+EA++A+ M+ K+V KPLYV
Sbjct: 319 DESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 379 ALAQRKE 385
LA++++
Sbjct: 379 GLAEKRD 385
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 30/304 (9%)
Query: 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYG 155
+M RD + S + +++ +L + L++ F+ G + S +V D + +S GY
Sbjct: 14 MMMPMRDTQVFSSAS--LYVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYA 71
Query: 156 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ--ERDTEINKSKFTNVYVKNLSES 213
+V + + + A+ A+E LN + + GH R RD + +S N++VKNL +S
Sbjct: 72 YVNYYSTQDAEAALESLNYIEIK------GHPTRIMWSNRDPSLRRSGAGNIFVKNLDKS 125
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V D G SK +GFV++EN + A A+E +NG K
Sbjct: 126 IDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRV 185
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
V +K +RE E + F NLY++N ++E L+Q +G IT
Sbjct: 186 EVAPFLRKQDREGE-------------EVF--TNLYVRNFPADWNEEALRQFLEKYGEIT 230
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVALAQRKEDRRARL 391
S + D G R FV + PE A + +N + S+PL V Q K R+ L
Sbjct: 231 SMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTLNDLKLDESSEPLLVCPHQDKAKRQNLL 288
Query: 392 QAQF 395
+AQF
Sbjct: 289 RAQF 292
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/326 (54%), Positives = 242/326 (74%), Gaps = 3/326 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMR 339
DDSIDD+KL++ FSP+G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 165/296 (55%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD GK+ + S+R+ L+ N++IKNLD
Sbjct: 66 KALDTMN---FD---IIKGKSIRLMWSQRDAYLRRS------------GIGNVFIKNLDK 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G S+G FV F A RA+ EMNGK++
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCK 166
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPV 401
++V + ++DR A L+++ ++ V
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNV 192
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD GK+ + S+R+ L+ N++IKNLD
Sbjct: 66 KALDTMN---FD---IIKGKSIRLMWSQRDAYLRRS------------GIGNVFIKNLDK 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G S+G FV F A RA+ EMNGK++
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCK 166
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPV 401
++V + ++DR A L+++ ++ V
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNV 192
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/383 (50%), Positives = 266/383 (69%), Gaps = 7/383 (1%)
Query: 6 AQGQNVNGGGANAN---QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
++GQ +G N ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR
Sbjct: 47 SRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR 106
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
RSLGY YVNF +A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+
Sbjct: 107 RSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKS 166
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+K L++ FSAFG ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V
Sbjct: 167 IDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 183 YVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F +++R+ E+ S+FTNVY+KN +E L+ F +YG S VM D G
Sbjct: 226 FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+F++ + A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERI 345
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
QG LYIKNLDD+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A+
Sbjct: 346 RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDAT 404
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+A+ EMNG+++ SKPL +ALAQR
Sbjct: 405 KAMTEMNGRILGSKPLSIALAQR 427
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 244 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 25/215 (11%)
Query: 193 RDTEIN---KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFV 248
+D E+N K + ++YV +L TE+ L + F G + S + RD +S + +V
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYV 114
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGA 306
NF DA +A++ +N FD GK+ + S+R+ L+
Sbjct: 115 NFLQLADAQKALDTMN---FD---IIKGKSIRLMWSQRDAYLRRS------------GIG 156
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N++IKNLD SID++ L + FS FG I S KVM D G S+G FV F A RA+ EM
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV 401
NGK++ ++V + ++DR A L+++ ++ V
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNV 250
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/383 (50%), Positives = 266/383 (69%), Gaps = 7/383 (1%)
Query: 6 AQGQNVNGGGANAN---QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
++GQ +G N ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR
Sbjct: 47 SRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR 106
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
RSLGY YVNF +A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+
Sbjct: 107 RSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKS 166
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+K L++ FSAFG ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V
Sbjct: 167 IDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 183 YVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F +++R+ E+ S+FTN+Y+KN +E L+ F +YG S VM D G
Sbjct: 226 FVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+F++ + A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERI 345
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
QG LYIKNLDD+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A+
Sbjct: 346 RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDAT 404
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+A+ EMNG+++ SKPL +ALAQR
Sbjct: 405 KAMTEMNGRILGSKPLSIALAQR 427
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/383 (50%), Positives = 266/383 (69%), Gaps = 7/383 (1%)
Query: 6 AQGQNVNGGGANAN---QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
++GQ +G N ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR
Sbjct: 46 SRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR 105
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
RSLGY YVNF +A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+
Sbjct: 106 RSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKS 165
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+K L++ FSAFG ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V
Sbjct: 166 IDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 224
Query: 183 YVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F +++R+ E+ S+FTN+Y+KN +E L+ F +YG S VM D G
Sbjct: 225 FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 284
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+F++ + A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E
Sbjct: 285 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERI 344
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
QG LYIKNLDD+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A+
Sbjct: 345 RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDAT 403
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+A+ EMNG+++ SKPL +ALAQR
Sbjct: 404 KAMTEMNGRILGSKPLSIALAQR 426
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 68 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 127
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 128 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 183
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 184 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 242
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 243 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 292
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 293 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 340
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/383 (50%), Positives = 266/383 (69%), Gaps = 7/383 (1%)
Query: 6 AQGQNVNGGGANAN---QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
++GQ +G N ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR
Sbjct: 47 SRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR 106
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
RSLGY YVNF +A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+
Sbjct: 107 RSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKS 166
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+K L++ FSAFG ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V
Sbjct: 167 IDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 183 YVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F +++R+ E+ S+FTN+Y+KN +E L+ F +YG S VM D G
Sbjct: 226 FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+F++ + A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERI 345
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
QG LYIKNLDD+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A+
Sbjct: 346 RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDAT 404
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+A+ EMNG+++ SKPL +ALAQR
Sbjct: 405 KAMTEMNGRILGSKPLSIALAQR 427
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/383 (50%), Positives = 266/383 (69%), Gaps = 7/383 (1%)
Query: 6 AQGQNVNGGGANAN---QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
++GQ +G N ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR
Sbjct: 47 SRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR 106
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
RSLGY YVNF +A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+
Sbjct: 107 RSLGYAYVNFLQLADAQKALDTMNFDMIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKS 166
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+K L++ FSAFG ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V
Sbjct: 167 IDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 183 YVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F +++R+ E+ S+FTN+Y+KN +E L+ F +YG S VM D G
Sbjct: 226 FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+F++ + A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERI 345
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
QG LYIKNLDD+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A+
Sbjct: 346 RGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDAT 404
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+A+ EMNG+++ SKPL +ALAQR
Sbjct: 405 KAMTEMNGRILGSKPLSIALAQR 427
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 129 MNFDMIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/244 (70%), Positives = 218/244 (89%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F TSLYVGDL +V D+QL+D+F+Q+G VVSVRVCRD+++R+SLGY YVN++N +AAR
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE+LNFTP+NGKPIR+MYS+RDPS RKSG GNIFIKNLDK+ID+KAL+DTF AFGNILS
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILS 151
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ATD +G+S+GYGFVQF+ +ESAQ AI+KLNGML+NDK+V+VG F+RKQ+R+ +
Sbjct: 152 CKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRENVSSNI 211
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KF+NVYVKNLS++ T+++L++ FG+YGTITSAVVMRD DGKS+CFGFVNFEN+D AA+AV
Sbjct: 212 KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAV 271
Query: 261 EALN 264
+ LN
Sbjct: 272 QELN 275
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 149/264 (56%), Gaps = 17/264 (6%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKGYGFVQFDNEESAQKAI 169
A ++++ +L +++ L D FS G ++S +V D+N +S GY +V ++N+ A +A+
Sbjct: 34 ATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARAL 93
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN +N K + + + RD KS N+++KNL +S + L +F +G I
Sbjct: 94 ELLNFTPINGKPIRIMY----SNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNI 149
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + D G+S+ +GFV FE + A A++ LNG +DK+ +VG +K +RE
Sbjct: 150 LSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRE---- 205
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+ + +N+Y+KNL D++ D++LK++F +G+ITS VMRD G SR G
Sbjct: 206 --------NVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFG 257
Query: 350 FVAFSTPEEASRALLEMNGKMVVS 373
FV F + A++A+ E+N +V S
Sbjct: 258 FVNFENADAAAQAVQELNDGVVSS 281
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 17/186 (9%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVE 261
T++YV +L ES + L F + G + S V RD + KS + +VN+ N DAARA+E
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + K + N ++ K N++IKNLD SID++
Sbjct: 95 LLNFTPINGKPIRI----------------MYSNRDPSSRKSGTGNIFIKNLDKSIDNKA 138
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L F FG+I SCK+ DPSG SRG GFV F E A A+ ++NG ++ K ++V
Sbjct: 139 LYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPF 198
Query: 382 QRKEDR 387
RK+DR
Sbjct: 199 VRKQDR 204
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
F +LY+ +L +S+ D +L +FS G + S +V RD S S G +V ++ +A+R
Sbjct: 32 FPATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAAR 91
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
AL +N + KP+ + + R R
Sbjct: 92 ALELLNFTPINGKPIRIMYSNRDPSSR 118
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/383 (48%), Positives = 265/383 (69%), Gaps = 4/383 (1%)
Query: 4 VQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
VQ G G + A ++ SLYVGDL A+ T+ L+ F+ G V+S+R+CRD++TRR
Sbjct: 102 VQEAGSARGGEVSVAAKYRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRR 161
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI 123
LGY YVNF +A +AL+ +NF + GKPIR+M+S RD LRKSG GN+ IKNLD+++
Sbjct: 162 PLGYAYVNFLRPADAQKALDTMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSV 221
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D+K L++ FS FG ILS KV +D G SKGY FV F ++ +A AI+++NG ++ D+QV
Sbjct: 222 DNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVL 280
Query: 184 VGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
V F +++R+ E+ S+FTNVYVKN E +E LQ F +YG S VM D GK
Sbjct: 281 VAPFRSRRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGK 340
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK FGFV+F++ + A +AVE +NGK + + +VG+AQKK ER+ ELK FE+ ++ A
Sbjct: 341 SKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGAR 400
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
+ QG LYIKNLDD++DD++L++ FS FGSI+ KVM + G +G G V FS+PEEA++
Sbjct: 401 RCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVMEE-EGQRKGFGLVCFSSPEEAAK 459
Query: 362 ALLEMNGKMVVSKPLYVALAQRK 384
A+ +MNG+++ SKPL +ALA+R+
Sbjct: 460 AMTQMNGRVLGSKPLNIALAKRQ 482
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 157/288 (54%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEK 171
++++ +L L FS G +LS ++ D+ + GY +V F AQKA++
Sbjct: 123 SLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALDT 182
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + K + L +RD + KS NV +KNL S + L + F +G I S
Sbjct: 183 MNFDAVEGKPIR----LMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGRILS 238
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F++ A A++ +NGK D++ V + + +RE EL+ +
Sbjct: 239 SKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTR 297
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ N+Y+KN + +DDE+L+ +FS +G S KVM D SG S+G GFV
Sbjct: 298 TSEF----------TNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFV 347
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNGK + + ++V AQ+KE+R+A L+ F +++
Sbjct: 348 SFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELK 395
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 22/203 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD + + +VNF DA
Sbjct: 118 KYRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQ 177
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD E GK + S+R+ L+ K N+ IKNLD
Sbjct: 178 KALDTMN---FDAVE---GKPIRLMWSQRDACLR------------KSGVGNVIIKNLDR 219
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
S+D++ L + FS FG I S KVM D G S+G FV F + A A+ EMNGK++ +
Sbjct: 220 SVDNKTLYEHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADCAIQEMNGKVIRDRQ 278
Query: 376 LYVALAQRKEDRRARLQAQFAQM 398
+ VA + + DR A L+ + ++
Sbjct: 279 VLVAPFRSRRDREAELRTRTSEF 301
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 272 EWYVGKAQKKSERE---LELKH------------QF----EQNMKEA----------ADK 302
EW G+ ++K +R L+ KH +F ++++EA A K
Sbjct: 59 EWETGEGRRKEKRSKKILKSKHPTWPRARGKFRAEFRVGPRRSVQEAGSARGGEVSVAAK 118
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
++ A+LY+ +L ++ L + FS G + S ++ RD + G +V F P +A +
Sbjct: 119 YRLASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQK 178
Query: 362 ALLEMNGKMVVSKPLYVALAQR 383
AL MN V KP+ + +QR
Sbjct: 179 ALDTMNFDAVEGKPIRLMWSQR 200
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 267/367 (72%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL ++VT+ L+ F+++G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K+L++ FSAFG
Sbjct: 64 AQKALDTMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F ++ +A +AIE++NG L D +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAEL 182
Query: 198 -NK-SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK S+FTNVY+KN + +E L++ F YG I S VM + GKS+ FGFV+F++ +
Sbjct: 183 RNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NGK+ + + +VG+AQKK ER+ ELK FEQ KE QGA LYIKNLD+
Sbjct: 243 ARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKNLDE 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ E+A+RA+ MNG+++ SKP
Sbjct: 303 NIDDEKLRKEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRILGSKP 361
Query: 376 LYVALAQ 382
L +ALAQ
Sbjct: 362 LNIALAQ 368
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 169/289 (58%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDVVKGKAIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F++ A RA+E +NGK D + +VG+ + + +RE EL+++
Sbjct: 127 SKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+L+++FS +G I S KVM + G SRG GFV
Sbjct: 186 --------ASEF--TNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRP 400
+F + E A +A+ EMNGK V +P++V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKK 284
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L K F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD GKA + S+R+ L+ K N++IKNLD
Sbjct: 66 KALDTMN---FD---VVKGKAIRLMWSQRDAYLR------------KSGIGNVFIKNLDK 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G S+G FV F + A RA+ EMNGK +
Sbjct: 108 SIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEMNGKFLKDCK 166
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPV 401
++V + ++DR A L+ + ++ V
Sbjct: 167 VFVGRFKSRKDREAELRNKASEFTNV 192
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/383 (50%), Positives = 266/383 (69%), Gaps = 7/383 (1%)
Query: 6 AQGQNVNGGGANAN---QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR 62
++GQ +G N ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR
Sbjct: 47 SRGQTHSGKDREMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR 106
Query: 63 RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
RSLGY YVNF +A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+
Sbjct: 107 RSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKS 166
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+K L++ FSAFG ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V
Sbjct: 167 IDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 183 YVGHFLRKQERDTEINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F +++R+ E+ S+FTN+Y+KN +E L+ F +YG S VM D G
Sbjct: 226 FVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSG 285
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+F++ + A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E
Sbjct: 286 KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERI 345
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
QG LYIKNLDD+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A+
Sbjct: 346 CGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDAT 404
Query: 361 RALLEMNGKMVVSKPLYVALAQR 383
+A+ EMNG+++ SKPL +ALAQR
Sbjct: 405 KAMTEMNGRILGSKPLSIALAQR 427
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 244 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/322 (56%), Positives = 238/322 (73%), Gaps = 21/322 (6%)
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 155 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 214
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 215 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 273
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 274 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 333
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD
Sbjct: 334 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 393
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
IDDE+L++ FSPFG+ITS K EEA++A+ EMNG++V +KP
Sbjct: 394 GIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATKP 435
Query: 376 LYVALAQRKEDRRARLQAQFAQ 397
LYVALAQRKE+R+A L Q+ Q
Sbjct: 436 LYVALAQRKEERQAHLTNQYMQ 457
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 162/294 (55%), Gaps = 40/294 (13%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 187 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 244
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L D F F
Sbjct: 245 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 304
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER T
Sbjct: 305 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 364
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+YVKNL + +E L+K F +GTITSA
Sbjct: 365 EL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA---------- 413
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+NS++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 414 --------KNSEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 459
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 44/214 (20%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 274 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 330
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 331 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 389
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S K N E A KA+ ++NG ++
Sbjct: 390 NLDDGIDDERLRKEFSPFGTITSAK------------------NSEEATKAVTEMNGRIV 431
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 432 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 460
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/432 (44%), Positives = 279/432 (64%), Gaps = 38/432 (8%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 58 SASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKAL 117
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 118 EELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 177
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 178 VAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 237
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ TE+D ++ F +YG +TS+ + RD +GKS+ FGFVNF + A++AV
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFE-------QNMKEAADKFQGANLYIKNL 313
+ LN K F ++ YVG+AQKK ERE EL+ +E Q M + + +
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEAARRGEGQQMNKECGSITSTKVMRETP 357
Query: 314 DDSIDDEKLK-QLFSPFGSITSCKVMRDPS------------------------GISRGS 348
+ ++++K K + +V +P G S+G
Sbjct: 358 TEVVEEKKEKAETVKENQEEVKDEVKEEPKEESKDETKEGEEDKKAEKKSDKKLGKSKGF 417
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA 408
GFV FS P++A++A+ EMN +M KPLYVALAQRK+ R+++L+A + M VA
Sbjct: 418 GFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQIRMQQAVA 477
Query: 409 ----PRMPMYPP 416
P+ M PP
Sbjct: 478 HAGMPQQYMQPP 489
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/366 (51%), Positives = 264/366 (72%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A VT+ L+ F+ +G V+S+R+CRDL T+RSLGY YVNF + +A
Sbjct: 6 KYRQASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNL K+ID+K L++ FSAFG IL
Sbjct: 66 KALDTMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G S+GY FV F ++ +A +AIE +NG LL +++VG F +++R E+ N
Sbjct: 126 SSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQN 184
Query: 199 KS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K+ +FTNVY+KN + +E L++ F +G I S VM D G+SK FGFV+F++ + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQ 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAVE +NGK + +VG+AQKK+ER+ ELK FEQ +E +F+G LYIKNLDDSI
Sbjct: 245 RAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FS FGSI+ KVM++ G S+G G + FS+PEEA++A++EMNG+++ SK L
Sbjct: 305 DDERLRREFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLN 363
Query: 378 VALAQR 383
+ALAQR
Sbjct: 364 IALAQR 369
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 168/288 (58%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ DL Q S GY +V F + AQKA++
Sbjct: 11 SLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDMIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D D S+ + FV+F++ A RA+EA+NG +VG + + +R+ EL+++
Sbjct: 127 SKVMSD-DAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A++F N+YIKN D +DDE+LK++FS FG I S KVM D G S+G GFV
Sbjct: 186 --------ANEF--TNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A RA+ MNGK + +PL+V AQ+K +R+A L+ F QM+
Sbjct: 236 SFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMK 283
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/366 (51%), Positives = 264/366 (72%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ FN +G V+S+R+CRDL TRRSLGY YVNF N +A
Sbjct: 6 KYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ L+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG IL
Sbjct: 66 KVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-N 198
S KV +D G S+GY FV F ++ +A +AIE++NG LL + +++VG F ++ER+ E+ N
Sbjct: 126 SSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQN 184
Query: 199 KS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
K+ +FTNVY+KN + +E L++ F +YG I S VM D GKSK FGFV+F+ + A
Sbjct: 185 KANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQ 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAVE +NGK + +VG+AQKK+ER+ ELK FEQ +E + +G LYIKNLD++I
Sbjct: 245 RAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDETI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+E+L++ FS FGS++ KVM + G S+G G + FS PEEA++A+ EMNG+++ SK +
Sbjct: 305 DEEQLRRAFSSFGSMSRVKVM-EEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAIN 363
Query: 378 VALAQR 383
+ALAQR
Sbjct: 364 IALAQR 369
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L F+ G +LS ++ DL +S GY +V F N AQK ++
Sbjct: 11 SLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQKVLDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + KS NV++KNL S + L + F +G I S
Sbjct: 71 MNFDMIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKMLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ + FV+F++ A RA+E +NG + +VG + + ERE EL+++
Sbjct: 127 SKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQNK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A++F N+YIKN D +DDE+LK++FS +G I S KVM D SG S+G GFV
Sbjct: 186 --------ANEF--TNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F T E A RA+ MNGK + + ++V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLK 283
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 104/183 (56%), Gaps = 20/183 (10%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
AN+F T++Y+ + ++ D +L ++F+Q G++VSV+V D S+ +S G+G+V+F +
Sbjct: 186 ANEF--TNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTD-SSGKSKGFGFVSFDTHEA 242
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPS-----------LRKSGAG-----NIFIKNLDK 121
A RA+E +N + G+ + V + + L++ G ++IKNLD+
Sbjct: 243 AQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQLKRERFGRCRGVKLYIKNLDE 302
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
ID + L FS+FG++ KV + G+SKG+G + F E A KA+ ++NG +L K
Sbjct: 303 TIDEEQLRRAFSSFGSMSRVKVMEE-EGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKA 361
Query: 182 VYV 184
+ +
Sbjct: 362 INI 364
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 22/197 (11%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF N DA
Sbjct: 6 KYRHASLYVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGYAYVNFLNLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+ ++ +N FD GK+ + S+R+ L+ K N++IKNLD
Sbjct: 66 KVLDTMN---FD---MIQGKSIRLMWSQRDAYLR------------KSGIGNVFIKNLDR 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G SRG FV F + A RA+ EMNG ++ +
Sbjct: 108 SIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEMNGALLKNCR 166
Query: 376 LYVALAQRKEDRRARLQ 392
L+V + +++R A LQ
Sbjct: 167 LFVGPFKNRKEREAELQ 183
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/304 (57%), Positives = 232/304 (76%), Gaps = 3/304 (0%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N + RALE LN+T + G+P R+M+
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D G SKGYGFV +
Sbjct: 62 SQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHY 121
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEE 217
+ E+A AI+ +NGMLLN+K+V+VGH + K++R ++ K+ FTN+YVKN+ + T+E
Sbjct: 122 ETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE 181
Query: 218 DLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
+ + F +YG ITSA + RD + GKS+ FGFVNF + + A+ AVE LN + ++ YVG
Sbjct: 182 EFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVG 241
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDDEKL++LFS +G+ITS K
Sbjct: 242 RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAK 301
Query: 337 VMRD 340
VMR+
Sbjct: 302 VMRE 305
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 199/391 (50%), Gaps = 63/391 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 72 GQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNA 130
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + + +D + K+ NI++KN+++ + + F +
Sbjct: 131 IKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRALFEKY 190
Query: 136 GNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
G+I S ++ D G+S+G+GFV F + E+A A+E LN L +++YVG +K ER+
Sbjct: 191 GDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHERE 250
Query: 195 TEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K SK+ N+Y+KNLS+ +E L++ F YG ITSA VMR+ +
Sbjct: 251 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKVMREATAE- 309
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
V E+ D K DKE G+A +K+E E K
Sbjct: 310 -----VPTESDKD-----------KEADKEKAKGEAGEKTEEGPEGK------------- 340
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
+ D + K G K + G S+G GFV FS P+EAS+A
Sbjct: 341 -------------TDDKSEEKTEEKTEGKTEGAKPEKKHLGKSKGFGFVCFSNPDEASKA 387
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 388 VTEMNQRMVHGKPLYVALAQRKDVRKSQLEA 418
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 21/182 (11%)
Query: 219 LQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L + F G + S V RD +S + +VN+ N+ D RA+E LN + +
Sbjct: 2 LYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMW 61
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+Q+ A K N++IKNLD +ID++ L F+ FG+I SCKV
Sbjct: 62 SQRDP----------------ALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKV 105
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+D G S+G GFV + T E A+ A+ +NG ++ K ++V K+DR Q++F +
Sbjct: 106 AQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDR----QSKFEE 161
Query: 398 MR 399
M+
Sbjct: 162 MK 163
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/374 (50%), Positives = 256/374 (68%), Gaps = 7/374 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F + SLYVGDL+ +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ + Q+A
Sbjct: 24 FSSASLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEA 83
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LN+ + G P R+M+S+RDPSLRKSGAGNIF+KNLDK+ID K+L+DTF+ FG ILS
Sbjct: 84 ALENLNYIEIKGHPTRIMWSNRDPSLRKSGAGNIFVKNLDKSIDTKSLYDTFAHFGTILS 143
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G S+ YGFV +++EESA++AIEK+NGML+ K+V V FLRKQ+R+TE
Sbjct: 144 CKVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRETE---E 200
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+YV+N EE L++ +YG ITS ++ D G+ F FVN++ + A V
Sbjct: 201 VYTNLYVRNFPADWDEEALRQFLEKYGEITSMMLKEDSKGRR--FAFVNYKEASVAKEVV 258
Query: 261 EALNGKKFDD--KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
LN K ++ V Q K +R+ LK QF DK +NLYIKNLDD+ D
Sbjct: 259 TTLNDLKLEEASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFD 318
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D L +LF FG+ITS KVM D + SRG GFV FS P+EA++A+ M+ K+V KPLYV
Sbjct: 319 DASLGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 379 ALAQRKEDRRARLQ 392
LA++++ R R+Q
Sbjct: 379 GLAEKRDQRLMRMQ 392
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 149/299 (49%), Gaps = 30/299 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ LYD F G ++S +V D ST S YG+V++ + + A A
Sbjct: 113 GAGNIFVKNLDKSIDTKSLYDTFAHFGTILSCKVAVD-STGASRRYGFVHYESEESAREA 171
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA------GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N + GK + V P LRK N++++N D +AL +
Sbjct: 172 IEKVNGMLIGGKKVEVA-----PFLRKQDRETEEVYTNLYVRNFPADWDEEALRQFLEKY 226
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL---NDKQVYVGH------ 186
G I S + D G + + FV + A++ + LN + L +D + H
Sbjct: 227 GEITSMMLKEDSKG--RRFAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCPHQDKVKR 284
Query: 187 --FLRKQERDT---EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
L+ Q + +K +N+Y+KNL ++ + L + F ++GTITS+ VM D +
Sbjct: 285 QNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFDDASLGELFKQFGTITSSKVMLDANNN 344
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ--FEQNMKE 298
S+ FGFV F N +A +A+ A++ K K YVG A+K+ +R + ++ + FE + ++
Sbjct: 345 SRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYVGLAEKRDQRLMRMQQRRGFEPHARD 403
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 268/419 (63%), Gaps = 51/419 (12%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLY GDL +VT++ LY++FN +G V S+RVCRD TR+SLGY Y+NF N +A RAL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++P+ G+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS FGNILSCKVA
Sbjct: 109 LNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVA 168
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + ER+ K+ FTN
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTN 227
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+K++ S EE +++ FG +G ITS V D G+ F FVN+ + A AVE ++
Sbjct: 228 VYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMD 285
Query: 265 GKKFDDKE-----------------------------------------------WYVGK 277
GK ++E YV +
Sbjct: 286 GKDVRNEEEKAADRAQREREREERKAAREAAKAEGREEGDDVESDDDDEEPETSHLYVAR 345
Query: 278 AQKKSERELELKHQFEQN-MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
AQ K+ER LK QF + + +F G NLY+KNL + +DD +LK++F PFG++TS K
Sbjct: 346 AQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSVK 405
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
VM D G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ ++
Sbjct: 406 VMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L +V D++L +F G V SV+V D S G+G+V FS +EA +A+
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 84 MLNFTPLNGKPIRV-MYSHRDPSLRK 108
++ + GKP+ V M+ R+ L +
Sbjct: 434 DMHLKLIGGKPLYVGMHEKREQRLER 459
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/366 (51%), Positives = 256/366 (69%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ G V+S+R+CRD TRRSLGY YVNF + +A
Sbjct: 283 KYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQ 342
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG IL
Sbjct: 343 KALDTMNFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRIL 402
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +Q+R+ E+
Sbjct: 403 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRS 461
Query: 200 --SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 462 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 521
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NG+ + + +V +AQKK ER+ ELK FEQ E Q LY+KNLDD+I
Sbjct: 522 KAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTI 581
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FS FGSI+ KVM++ G S+G G + FS+PE+A +A+ EMNG+++ SKPL
Sbjct: 582 DDEKLRKEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLS 640
Query: 378 VALAQR 383
+ALAQR
Sbjct: 641 IALAQR 646
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 167/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ D L +S GY +V F + AQKA++
Sbjct: 288 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDT 347
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 348 MNFDVIQGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILS 403
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 404 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSK 462
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 463 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 512
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++VA AQ+K +R+A L+ F Q++
Sbjct: 513 SFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLK 560
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 21/218 (9%)
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKC 244
H + +E D E K + ++YV +L TE+ L + F G + S + RD +S
Sbjct: 271 HSGQDEEMDVEA-KYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLG 329
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+ +VNF + DA +A++ +N FD Q KS R + + ++A +
Sbjct: 330 YAYVNFLHLADAQKALDTMN---FD-------VIQGKSIRLM-------WSQRDAYLRRS 372
Query: 305 G-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G N++IKNLD SID++ L + FS FG I S KVM D G S+G FV F A RA+
Sbjct: 373 GIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAI 431
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV 401
EMNGK++ ++V + ++DR A L+++ ++ V
Sbjct: 432 EEMNGKLLQGCKVFVGRFKSRQDREAELRSKASEFTNV 469
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 268/419 (63%), Gaps = 51/419 (12%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLY GDL +VT++ LY++FN +G V S+RVCRD TR+SLGY Y+NF N +A RAL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN++P+ G+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS FGNILSCKVA
Sbjct: 109 LNYSPIKGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVA 168
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + ER+ K+ FTN
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTN 227
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+K++ S EE +++ FG +G ITS V D G+ F FVN+ + A AVE ++
Sbjct: 228 VYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMD 285
Query: 265 GKKFDDKE-----------------------------------------------WYVGK 277
GK ++E YV +
Sbjct: 286 GKDVRNEEEKAADRAQREREREERKAAREAAKAEGREDGDDVESDDDDEEPETSHLYVAR 345
Query: 278 AQKKSERELELKHQFEQN-MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
AQ K+ER LK QF + + +F G NLY+KNL + +DD +LK++F PFG++TS K
Sbjct: 346 AQPKAERAAVLKEQFSASRGAQGGGRFGGVNLYVKNLGEDVDDAELKKMFEPFGTVTSVK 405
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
VM D G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ ++
Sbjct: 406 VMVDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L +V D++L +F G V SV+V D S G+G+V FS +EA +A+
Sbjct: 375 VNLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVD-DKGVSRGFGFVCFSTHEEATKAVT 433
Query: 84 MLNFTPLNGKPIRV-MYSHRDPSLRK 108
++ + GKP+ V M+ R+ L +
Sbjct: 434 DMHLKLIGGKPLYVGMHEKREQRLER 459
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 207/445 (46%), Positives = 276/445 (62%), Gaps = 64/445 (14%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G G N F + SLYVGDL V + LY++FN +G V S+RVCRD TRRSLGY YVN+
Sbjct: 2 GVGGAPNSFTSASLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNY 61
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
A +A RAL+ +NFT + GKP R+M+S RDPS+R+SG GNIF+KNL + ID+K L+DTF
Sbjct: 62 HQAADAERALDSMNFTDIKGKPCRIMWSQRDPSVRRSGVGNIFVKNLHEGIDNKQLYDTF 121
Query: 133 SAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
S FGNILSCKV D G SKGYG+V ++ E+A AI+KL+GML++ K+V VG F+R
Sbjct: 122 SLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMR-- 179
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----------------- 234
RDT ++ +TN+++KN+ ++ L+ F E+G I SA V
Sbjct: 180 -RDTRPDQEVYTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASVKMGKRKKFAKKGKKAEA 238
Query: 235 MRDGDGK----------------------------------SKCFGFVNFENSDDAARAV 260
+D D K S FGFVNF + AA AV
Sbjct: 239 KKDEDDKEDGAEDKPAEEEKPEEEEAKPAEEEAKPESTEPESLGFGFVNFATHEAAAAAV 298
Query: 261 EALNGKKFD--------DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
EA+N K + +K +VG+AQKKSER+ EL+ ++E E KFQG NLY+KN
Sbjct: 299 EAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYEAEKMERIAKFQGVNLYVKN 358
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV 371
LDD++ D+ L+ F G+ITS K+MRD + SRG GFV FSTPE+A+RA+ EM+GK+V
Sbjct: 359 LDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIV 418
Query: 372 VSKPLYVALAQRKEDRRARLQAQFA 396
KP+YV+LAQR+E RRA+L+AQ A
Sbjct: 419 AGKPIYVSLAQRREVRRAQLEAQHA 443
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 37/224 (16%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L E L + F G + S V RD +S + +VN+ + DA RA+++
Sbjct: 14 SLYVGDLLPEVNEGLLYEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQAADAERALDS 73
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K + +Q+ + + N+++KNL + ID+++L
Sbjct: 74 MNFTDIKGKPCRIMWSQRDP----------------SVRRSGVGNIFVKNLHEGIDNKQL 117
Query: 323 KQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG+I SCKV+ D +G+S+G G+V + T E A+ A+ +++G ++ K + V +
Sbjct: 118 YDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVF 177
Query: 382 QRKEDRR-------------------ARLQAQFAQMRPVAMAST 406
R++ R RL+A+FA+ + AS
Sbjct: 178 MRRDTRPDQEVYTNLFIKNMPYEWDDKRLEAEFAEFGEIVSASV 221
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 255/367 (69%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +QG LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI KVM+ G S+G GF+ FS+ E+A++A++EMNG + SKP
Sbjct: 303 TIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKGFGFICFSSLEDATKAMIEMNGCFLGSKP 361
Query: 376 LYVALAQ 382
+ +ALAQ
Sbjct: 362 ISIALAQ 368
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 165/288 (57%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ D + +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 194/443 (43%), Positives = 277/443 (62%), Gaps = 74/443 (16%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+ +VT++ LY++FN + V SVR+CRD TRRSLGY YVN+++ +A RAL
Sbjct: 11 SASLYVGDLDPDVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LNFT + +P R+M+ RDP+ R++ GN+F+KNLDK+ID+K L DTFS FGNI+SCK
Sbjct: 71 DTLNFTCIRSRPCRIMWCLRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD G S GYGF+ F++ ESA++AI +LNGM+L D+ +YVG F RK ER +E +K+ F
Sbjct: 131 IATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFSEKDKT-F 189
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE----------- 251
TNVYVK++ ++ +EE L FG YG I+S V+ D G+ FGFVNFE
Sbjct: 190 TNVYVKHIPKTWSEETLHTLFGVYGKISSLVLQSDSKGRP--FGFVNFEDPESAKKAVAN 247
Query: 252 -------------NSDDAARA---------------------VEALNGKKFDDKE----- 272
NS+++ R VE+ + K+ +DKE
Sbjct: 248 LHNALVTPLGVELNSNNSERTESGKDDGLSSISSNTESSDETVESNDYKQRNDKEDPQEA 307
Query: 273 --------------------WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
YV +AQK++ER++ LK Q E +E+ +++QG NLY+KN
Sbjct: 308 DVEKNSDEENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHEA-ARESQNRYQGVNLYVKN 366
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
L +S+ + L+ LF P+G+I+S + D SGISRG GFV+F +P+EA++A+ EM+ K+V
Sbjct: 367 LSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMHLKLVR 426
Query: 373 SKPLYVALAQRKEDRRARLQAQF 395
KPLYV L +RKE R RLQ +
Sbjct: 427 GKPLYVGLHERKEQRALRLQQRI 449
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N++ +LYV +L ++T+S L LF G + SV + D S S G+G+V+F + EA
Sbjct: 355 NRYQGVNLYVKNLSESMTESDLRSLFEPYGTISSVSIKTDESG-ISRGFGFVSFLSPDEA 413
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR 102
+A+ ++ + GKP+ V R
Sbjct: 414 TKAITEMHLKLVRGKPLYVGLHER 437
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 185/367 (50%), Positives = 256/367 (69%), Gaps = 4/367 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 130 AAKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTD 189
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FS FG
Sbjct: 190 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGK 249
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 250 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAEL 308
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTN+Y+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 309 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEA 368
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +QG LY+KNLDD
Sbjct: 369 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGVKLYVKNLDD 428
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI KVM+ G S+G GF+ FS+ E+A++A++EMNG+ + SKP
Sbjct: 429 TIDDEKLRNEFSSFGSIIRVKVMQQ-EGQSKGFGFICFSSLEDATKAMIEMNGRFLGSKP 487
Query: 376 LYVALAQ 382
+ +ALAQ
Sbjct: 488 ISIALAQ 494
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS ++ D + +S GY +V F AQKA++
Sbjct: 137 SLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDT 196
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 197 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGKILS 252
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NG+ + +VG+ + + +RE EL+ +
Sbjct: 253 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSK 311
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D G S+G GFV
Sbjct: 312 --------ASEF--TNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFV 361
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 362 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 409
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 367 bits (942), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 186/341 (54%), Positives = 247/341 (72%), Gaps = 5/341 (1%)
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK ID+K+++DTFS FGNIL
Sbjct: 25 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNIL 84
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCKVA D +G SKGYGFV F+ EE+AQ AI+K+NGMLL K+V+VG F + +R+ E+ +
Sbjct: 85 SCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGE 144
Query: 200 S--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+ +FTNVYVKN + +E L+K F ++G ITS VM +GKSK FGFV F N ++A
Sbjct: 145 TAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAE 203
Query: 258 RAVEALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
AV+AL+ + D + +V +AQKKSER ELK + EQ+ E K+QG NLY+KNLD+
Sbjct: 204 TAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDE 263
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
++DD+ LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KMV SKP
Sbjct: 264 TVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKP 323
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
LYVA+AQRKEDRRA+L +Q+ Q P MY P
Sbjct: 324 LYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNP 364
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 159/295 (53%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A A
Sbjct: 55 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNA 113
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N L GK + V + R R+ G N+++KN + + L F+ F
Sbjct: 114 IQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKF 173
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQER 193
GNI SC+V T + G+SKG+GFV F N E A+ A++ L+ + D +++V +K ER
Sbjct: 174 GNITSCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSER 232
Query: 194 DTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K + N+YVKNL E+ ++ L+K F YG ITSA VM D +G+
Sbjct: 233 HAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGR 292
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 293 SKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 347
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 105/202 (51%), Gaps = 24/202 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-RSLGYGYVNFS 73
G A QF T++YV + + L LF + G + S C ++ +S G+G+V F+
Sbjct: 143 GETAKQF--TNVYVKNFGDHYNKETLEKLFAKFGNITS---CEVMTVEGKSKGFGFVAFA 197
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMY------------------SHRDPSLRKSGAGNIF 115
N +EA A++ L+ + + G +++ H+ ++K N++
Sbjct: 198 NPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLY 257
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+KNLD+ +D L F ++GNI S KV TD NG+SKG+GFV F+ E A A+ ++N
Sbjct: 258 VKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 317
Query: 176 LLNDKQVYVGHFLRKQERDTEI 197
++ K +YV RK++R ++
Sbjct: 318 MVCSKPLYVAIAQRKEDRRAQL 339
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/373 (49%), Positives = 256/373 (68%), Gaps = 2/373 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL +VT+ LYD F + + SVR+C+D ST RSL YGY NF + Q+A A+
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAI 82
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N + LNGK IRVM+S R+P R++G GN+F+KNL ++I + L D F FGNI+SCK
Sbjct: 83 EKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCK 142
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
VAT +G+S+GYGFVQF+ E++A AIEKLN + K++YVG F++K +R + K+
Sbjct: 143 VATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKA--EEKY 200
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KNL E+ L++ F E+G I S + +D +G K + FVNF+ +DA A E
Sbjct: 201 TNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAET 260
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NG +F K YVG+AQKK+ERE L+ QF++ +E K + +N+Y+KN++ + +E+L
Sbjct: 261 MNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEEEL 320
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FS G+ITS K+M D G S+G GFV FSTPEEA A+ +GKM KPLYVA AQ
Sbjct: 321 RKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQ 380
Query: 383 RKEDRRARLQAQF 395
+KEDR+ +LQ QF
Sbjct: 381 KKEDRKMQLQVQF 393
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 187/370 (50%), Positives = 257/370 (69%), Gaps = 4/370 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TR SLGY YVNF + +A
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG IL
Sbjct: 66 KALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 200 --SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NG+ + + +V +AQKK ER+ ELK FEQ KE Q LY+KNLDD+I
Sbjct: 245 KAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKNLDDTI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A +A+ EMNG+++ SKPL
Sbjct: 305 DDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLS 363
Query: 378 VALAQRKEDR 387
+ALAQ E R
Sbjct: 364 IALAQCSELR 373
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 165/289 (57%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + S GY +V F + AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRP 400
+F + E A +A+ EMNG+ + + ++VA AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKK 284
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 22/206 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF + DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD GK+ + S+R+ L+ N++IKNLD
Sbjct: 66 KALDTMN---FD---IIKGKSIRLMWSQRDAYLRRS------------GIGNVFIKNLDK 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G S+G FV F A RA+ EMNGK++
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLQGCK 166
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPV 401
++V + ++DR A L+++ ++ V
Sbjct: 167 VFVGRFKSRKDREAELRSKASEFTNV 192
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 185/384 (48%), Positives = 258/384 (67%), Gaps = 28/384 (7%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++Q
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMKQDRLRRYQ--------- 292
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
+ + P G + + ++PS F TP A+ A+ EMNG++V +
Sbjct: 293 ---LSRGPAQCWAWPVGRREAAQP-QEPS----------FPTP--AALAVTEMNGRIVGT 336
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 337 KPLYVALAQRKEERKAILTNQYMQ 360
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 165/296 (55%), Gaps = 20/296 (6%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N +L + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
RE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD SG
Sbjct: 179 REAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQMK 284
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 191/402 (47%), Positives = 270/402 (67%), Gaps = 11/402 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ VT+ L +F+ MG + +V +CR T RSL YGYVNF +A +AL
Sbjct: 20 SLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSN 79
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GK +R+M+ R+P RKSG GN+++KNLD +ID L FS FG ILSCKV
Sbjct: 80 LNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVV 139
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT--EINKSKF 202
+ +G+SKGYGFVQFD+E+SA A L+ +L +K++YV F++K ER T ++ KF
Sbjct: 140 EE-HGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTTATSYDELKF 198
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKNLS+ T++ F +G I SAV+M+D +GKS+ FGFV+FE+ +DA +AV+A
Sbjct: 199 TNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDA 258
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNG + + + +VG+AQ K+ER+ L+H+++ +KF+ +NLY+KNL ID++KL
Sbjct: 259 LNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKL 318
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++LFS G I S KVMR +G SRG GFV FS+PEEA +AL +NG + K LYVA+AQ
Sbjct: 319 QELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQ 378
Query: 383 RKEDRRARLQAQFA--QMRPVAMA-STVAPRMPMYPPGAWIW 421
K DR+ LQ F+ Q +P ++ S+V P PP + ++
Sbjct: 379 CKRDRQLALQTYFSVPQSQPPYLSDSSVVP-----PPISPVY 415
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 162/294 (55%), Gaps = 22/294 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G +LYV +L+A++ + L LF++ G ++S +V + +S GYG+V F +
Sbjct: 101 ARKSGIGNLYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHG--KSKGYGFVQFDSEDS 158
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-------NIFIKNLDKAIDHKALHD 130
A A L+ T L K + V + S R + N+++KNL K + A H+
Sbjct: 159 ALAARTALHDTMLKEKKLYVSRFVKK-SERTTATSYDELKFTNLYVKNLSKDMTQDAFHN 217
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FSAFG I+S + D NG+S+G+GFV F++ E A+KA++ LNG L + ++VG K
Sbjct: 218 MFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQAK 277
Query: 191 QER------------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
ER +T + K K +N+YVKNL+ + LQ+ F G I SA VMR
Sbjct: 278 AERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYD 337
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+G S+ FGFV F + ++A +A+ ALNG F K YV AQ K +R+L L+ F
Sbjct: 338 NGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLALQTYF 391
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 278/419 (66%), Gaps = 7/419 (1%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA V A + + ++ T SLYVGDL +VT+ LYD F + + SVR+C+D S
Sbjct: 1 MATVHAALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDAS 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
+ RSL YGY NF + Q+A A+E N + LNGK IRVM+S R P R++G GN+F+KNL
Sbjct: 61 SGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLP 120
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+++ + L D F FGNI+SCKVAT +G+S+GYGFVQF+ E++A AI+ LN ++ DK
Sbjct: 121 ESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK 180
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
++YVG F++K +R + K+TN+Y+KNL +E+ L++ F E+G I S + +D +
Sbjct: 181 EIYVGKFMKKTDRVKP--EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR 238
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
+ + FVNF+N +DA RA E +NG KF K YVG+AQKK+ERE L+ QF++ +E
Sbjct: 239 LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQK 298
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+ +N+Y+KN++ ++ +E+L++ FS G+ITS K+M D G S+G GFV FSTPEEA
Sbjct: 299 MIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAI 358
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF---AQMRPVAMASTVAP--RMPMY 414
A+ +G+M KPLYVA+AQ+KEDR+ +LQ QF + R + +++V P P+Y
Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLY 417
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 186/385 (48%), Positives = 256/385 (66%), Gaps = 20/385 (5%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + SLYVGDL T++ LYD F+Q G V+S+RVCRD+ TRRSLGY YVNF ++
Sbjct: 5 APSYPMASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPED 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RA++ +NF L+ + S K + K FSAFGN
Sbjct: 65 AERAIDTMNFIQLSVNLASAISSS---------------KTWTRLSTTKCCTIPFSAFGN 109
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV +L G+SKGYGFV F+ EE+A KAIEKL+GML+NDK+V+VG F + ER E
Sbjct: 110 ILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREY 169
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+FTNV++KNL + L + FGE+G++ S + D +GKS+ FGFV+FE +
Sbjct: 170 GDRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHEC 229
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A + VE L+ K+F+ K+ +VG+AQKK+ER+ ELK +FE+ E ++QG NLY+KNLDD
Sbjct: 230 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDD 289
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNGKMVV 372
SI D+ L++ F+P+G+ITS KVM D S+G GFV F++ EEA++A+ EMNG+++
Sbjct: 290 SITDDILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIA 349
Query: 373 SKPLYVALAQRKEDRRARLQAQFAQ 397
SKPLYVALAQRK++R+A LQ Q+ Q
Sbjct: 350 SKPLYVALAQRKDERKAHLQQQYMQ 374
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 242/341 (70%), Gaps = 8/341 (2%)
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF ++G+P+R+M+S RDP+ R++G GNIFIKNLD+ ID+K+++DTFS FGNILSCKVA
Sbjct: 1 MNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 60
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
TD G SKGYGFV F+ E SAQ AIEK+NGMLL+DK+VYVG F + +R E+ +S K+
Sbjct: 61 TDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKY 120
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNV+VKN E +E L F ++G ITSAVVM D GK K FGFV F + D A +AVE
Sbjct: 121 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 180
Query: 263 LNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN + D + V +AQKKSER ELK ++E +E ++QG NLY+KN+++ ++D+
Sbjct: 181 LNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 240
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L+ FS FG+ITS KVM D +G S+G GFV F PEEA+ A+ +MN KM+ +KPLYVAL
Sbjct: 241 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 300
Query: 381 AQRKEDRRARLQAQFAQ----MRPVAMASTVAPRMPMYPPG 417
AQRKEDRRA+L +Q+ Q +R AS V +Y PG
Sbjct: 301 AQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPG 341
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 161/299 (53%), Gaps = 21/299 (7%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A + G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F
Sbjct: 22 ARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHS 80
Query: 78 AARALEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDT 131
A A+E +N L+ K + V + R L +SG N+F+KN + +D + L
Sbjct: 81 AQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAM 140
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLR 189
FS FG I S V TD G+ KG+GFV F ++++A +A+EKLN +L D ++ V +
Sbjct: 141 FSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQK 200
Query: 190 KQERDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K ER E+ + + N+YVKN+ E ++ L+ F +GTITSA VM D
Sbjct: 201 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD 260
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+G+SK FGFV FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 261 ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRL 319
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 186/374 (49%), Positives = 264/374 (70%), Gaps = 9/374 (2%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+ C RSLGY YVNF +
Sbjct: 4 AAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSI-TCHP----RSLGYAYVNFLQLAD 58
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLD++ID+K L++ FSAFG
Sbjct: 59 AQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK 118
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D +G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E
Sbjct: 119 ILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEF 177
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN + +E L++ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 178 QNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 237
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A RAVE +NGK + + +VG+AQKK+ER+ ELK FEQ E + +GA LYIKNLD+
Sbjct: 238 AKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDE 297
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ EEA++A+ EMNG+++ SKP
Sbjct: 298 TIDDEKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKP 356
Query: 376 LYVALAQRKEDRRA 389
L +ALAQ+ +R+
Sbjct: 357 LNIALAQKPXERKT 370
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 162/288 (56%), Gaps = 19/288 (6%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FSA G +LS + +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSAVGPVLSITC----HPRSLGYAYVNFLQLADAQKALDT 65
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ K + L +RD + KS NV++KNL S + L + F +G I S
Sbjct: 66 MNFDLIKGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILS 121
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G S+ + FV+F+N A RA+E +NG D +VG+ + + +RE E +++
Sbjct: 122 SKVMSDDHG-SRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNK 180
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN D +DDE+LK++FS +G S KVM D SG S+G GFV
Sbjct: 181 --------AHEF--TNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFV 230
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A RA+ EMNGK + + L+V AQ+K +R+A L+ F Q++
Sbjct: 231 SFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLK 278
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 172/292 (58%), Positives = 226/292 (77%), Gaps = 4/292 (1%)
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD 146
F + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D
Sbjct: 1 FFVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 60
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTN 204
NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER E+ +FTN
Sbjct: 61 ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTN 119
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
VY+KN E +E L++ F +YG S VM D GKSK FGFV+FE +DA RAV+ +N
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMN 179
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD +DDE+L++
Sbjct: 180 GKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRK 239
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPL
Sbjct: 240 EFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 159/267 (59%), Gaps = 29/267 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 24 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 81
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA---------GNIFIKNLDKAIDHKALHDTF 132
+E +N LN + + + R S ++ GA N++IKN + +D + L + F
Sbjct: 82 IEKMNGMLLNDRKV---FVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIF 138
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S +G LS +V TD +G+SKG+GFV F+ E AQ+A++++NG +N KQVYVG +K E
Sbjct: 139 SKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGE 198
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
R TE+ K KF N+YVKNL + +E L+K F +GTITSA VM +G
Sbjct: 199 RQTEL-KRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG- 256
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGK 266
G+SK FGFV F + ++A +AV +NG+
Sbjct: 257 GRSKGFGFVCFSSPEEATKAVTEMNGR 283
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 129/213 (60%), Gaps = 11/213 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 15 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 73
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ER E M A +F N+YIK
Sbjct: 74 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAE--------MGARAKEF--TNVYIK 123
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDEKLK++FS +G S +VM D SG S+G GFV+F E+A RA+ EMNGK +
Sbjct: 124 NFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEM 183
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA 404
K +YV AQ+K +R+ L+ +F QM+ M
Sbjct: 184 NGKQVYVGRAQKKGERQTELKRKFEQMKQDRMT 216
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 102/183 (55%), Gaps = 22/183 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L ++F++ G +S+RV D S + S G+G+V+F
Sbjct: 111 GARAKEF--TNVYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGK-SKGFGFVSFER 167
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A RA++ +N +NGK + V + + D R G N+++K
Sbjct: 168 HEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGV-NLYVK 226
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD +D + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 227 NLDDGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 285
Query: 178 NDK 180
K
Sbjct: 286 ATK 288
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+
Sbjct: 221 VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVT 278
Query: 84 MLNFTPLNGKPI 95
+N + KP+
Sbjct: 279 EMNGRIVATKPL 290
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 176/346 (50%), Positives = 240/346 (69%), Gaps = 4/346 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL ++VTD+QLY F++ ++S RVC+D +T +SL YGYVN S+ QEA RA+E+
Sbjct: 16 TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIEL 75
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N + LNGK IRVM+ RD RKSG GN+F+KNL +ID+ LHD F +GNILS K+A
Sbjct: 76 KNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIA 135
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+G+SKG+G++QFD+EESA AI+K+NG + DKQ+YVG F+RK ER +KFTN
Sbjct: 136 RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTN 195
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YVKNL TE+ L + F +G I S + +D +G+SK FGFVN+++ DDA RA+EA++
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMD 255
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G +F K YV +AQKK ERE L H F E K G+N+Y+KN+D S+ DE+L+
Sbjct: 256 GSQFGSKILYVARAQKKVEREQILHHLFV----EKGLKHMGSNIYVKNIDTSVGDEELRD 311
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
FS G + S KVMRD G S+G GFV FST EA +++ NG++
Sbjct: 312 HFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 160/301 (53%), Gaps = 19/301 (6%)
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQK 167
S A +++ +L + L+ FS F ++S +V D G+S YG+V + + A +
Sbjct: 12 SPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIR 71
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
AIE N LN K + V RD + KS NV+VKNL+ S L F +YG
Sbjct: 72 AIELKNHSSLNGKVIRVMWL----SRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYG 127
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL- 286
I S+ + R DGKSK FG++ F++ + A A++ +NG DK+ YVGK +KSER L
Sbjct: 128 NILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLP 187
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
+L +F NLY+KNLD + ++ L + FS FG I S + +D +G S+
Sbjct: 188 DLDAKF-------------TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSK 234
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMAST 406
G GFV + +P++A RA+ M+G SK LYVA AQ+K +R L F + M S
Sbjct: 235 GFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSN 294
Query: 407 V 407
+
Sbjct: 295 I 295
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 15/166 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV +L+ VT+ L + F+ G++VS+ + +D +S G+G+VN+ + +A RA+E
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAME 252
Query: 84 MLNFTPLNGKPIRVMYSHR-------------DPSLRKSGAGNIFIKNLDKAIDHKALHD 130
++ + K + V + + + L+ G+ NI++KN+D ++ + L D
Sbjct: 253 AMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGS-NIYVKNIDTSVGDEELRD 311
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
FSA G +LS KV D G SKG+GFV F A K++ NG L
Sbjct: 312 HFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355
K+A A LY+ +L + D +L + FS F ++ S +V +D +G S G+V S+
Sbjct: 6 KDAVPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSS 65
Query: 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+EA RA+ N + K + V R D R
Sbjct: 66 HQEAIRAIELKNHSSLNGKVIRVMWLSRDADAR 98
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 354 bits (908), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 184/367 (50%), Positives = 256/367 (69%), Gaps = 4/367 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
++ SLYVGDL +VT+ L+ FN +G V+S+R+CRDL + RSLGYGYVNF +A
Sbjct: 5 TKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDA 64
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
+ALE +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG I
Sbjct: 65 QKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKI 124
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
+S KV TD G SKGYGFV + ++ +A +AIE++NG LL D ++V F +++R+ E+
Sbjct: 125 MSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 199 K--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ ++FTNVY+KN + +E L+ F +YG S VM+D GKSK FGFV+F++ A
Sbjct: 184 EKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAA 243
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE Q A LYIKNLDD+
Sbjct: 244 KNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDT 303
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
IDDE L++ FS FGSI KVM++ +G S+G G + F +PE A++A+ EMNG+++ SKPL
Sbjct: 304 IDDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPL 362
Query: 377 YVALAQR 383
+AL Q+
Sbjct: 363 NIALGQK 369
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 172/302 (56%), Gaps = 16/302 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 169
A ++++ +L + + L F+ G +LS ++ DL + +S GYG+V F AQKA+
Sbjct: 9 AASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKAL 68
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E +N L+ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 69 ETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKI 124
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S+ VM D +G SK +GFV++++ A RA+E +NGK D +V + + + +RE EL+
Sbjct: 125 MSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
E +F N+YIKN D +DDE L+ +FS +G S KVM+D SG S+ G
Sbjct: 184 --------EKPAEF--TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFG 233
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAP 409
FV+F + + A A+ +MNG+ + + ++V AQ+K +R+A L+ F QM+ + + A
Sbjct: 234 FVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAA 293
Query: 410 RM 411
++
Sbjct: 294 KL 295
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 178/374 (47%), Positives = 253/374 (67%), Gaps = 4/374 (1%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+EMLNF L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSC
Sbjct: 1 MEMLNFYKLKGKPMRIMFSERDPSKRLSGRGNVFVKNLDESIDNKQLSDMFSAFGKVLSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV D +G SKGYGFVQF +E S A NG L+ ++ ++V F+ +++ D
Sbjct: 61 KVVRDASGVSKGYGFVQFYSELSVNIACNVRNGTLIRNQHIHVSPFVSRRQWD---ESRV 117
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL+E+TT++DL+ F E+G ITSAVVM+D +GKS+ FGFVNFE ++ A A++
Sbjct: 118 FTNVYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAID 177
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDDE 320
+NG D+KE +VG+AQ+K R +LK F+ + +K +G NLY+KNLD S+D+
Sbjct: 178 KMNGTIVDEKELHVGRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNT 237
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++LFS FG+I SCKVM P+ IS+G GFV FST EEAS+A+L+MNGK+V +KP+YV+L
Sbjct: 238 KLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSL 297
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARWGSHAKF 440
AQ KE+ + L QF + ++ST+AP +P + W + + + + + F
Sbjct: 298 AQCKEEHKLHLHTQFNNLPWNVVSSTIAPSPHQHPIFSQAWPPMSIPNTMQRVYNFQSYF 357
Query: 441 LCADSSARAAGSAS 454
+C + + S
Sbjct: 358 MCGSRMSNSCPPMS 371
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 152/290 (52%), Gaps = 25/290 (8%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASG-VSKGYGFVQFYSELSVNIA 87
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSG------AGNIFIKNLDKAIDHKALHDTFSAF 135
+ NG IR + H P + + N+++KNL + L F F
Sbjct: 88 CNV-----RNGTLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDDDLKMIFEEF 142
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER-- 193
G I S V D G+S+ +GFV F+ E+A AI+K+NG ++++K+++VG RK+ R
Sbjct: 143 GEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNRIQ 202
Query: 194 -----------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
++ K TN+YVKNL S LQ+ F E+GTI S VM + S
Sbjct: 203 DLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRIS 262
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
K GFV F S++A++A+ +NGK +K YV AQ K E +L L QF
Sbjct: 263 KGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSLAQCKEEHKLHLHTQF 312
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKL++
Sbjct: 261 GKSIDGKALYVGRAQKKIERLAELRRRFERLKVKEKSRPPGVPVYIKNLDETIDDEKLRE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+MV SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVGEMNGRMVGSKPLHVTLGQ 377
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 163/300 (54%), Gaps = 17/300 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPETRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
T E A +A+L+++GK + K LYV AQ+K +R A L+ +F +++ + P +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRFERLK--VKEKSRPPGVPVY 305
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/307 (55%), Positives = 234/307 (76%), Gaps = 5/307 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRK G+GNIFIKNL ID+KAL+DTFS FG+ILS K+ATD NG+SKG+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--FTNVYVKNLSESTT 215
F+ E +A++AI+ LNGMLLN +++YV L ++ERD+++ ++K +TN+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E Q+ F ++G I SA + +D DGK K FGFVN+E +DA +AVEALN + + ++ YV
Sbjct: 121 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 180
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQKK+ER LK Q+E E K+QG NL++KNLDDS+DDEKL++ F+P+G+ITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSA 240
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
KVMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQRK+ RR++L Q
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 300
Query: 396 A---QMR 399
QMR
Sbjct: 301 QARNQMR 307
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 13 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 71
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + + F+ F
Sbjct: 72 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 131
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++ E A KA+E LN LN +++YVG H
Sbjct: 132 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMH 191
Query: 187 FLRKQ---ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 192 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK 251
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 252 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 301
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 211 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 269
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 270 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/307 (56%), Positives = 233/307 (75%), Gaps = 5/307 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRK G+GNIFIKNL ID+KAL+DTFS FG+ILS K+ATD NG+SKG+GFV
Sbjct: 1 MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--FTNVYVKNLSESTT 215
F+ E +A++AI+ LNGMLLN +++YV L ++ERD+++ ++K +TN+YVKN++ TT
Sbjct: 61 HFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETT 120
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E Q F ++G I SA + +D DGK K FGFVN+EN +DA +AVEALN + ++ YV
Sbjct: 121 DEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYV 180
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQKK+ER LK Q+E E K+QG NL++KNLDDS+DDEKL++ F+P+G+ITS
Sbjct: 181 GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSA 240
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
KVMR +G S+G GFV FSTPEEA++A+ E N ++V KPLYVA+AQRK+ RR++L Q
Sbjct: 241 KVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 300
Query: 396 A---QMR 399
QMR
Sbjct: 301 QARNQMR 307
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 161/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G+ ++++ +L ++ + LYD F+ G ++S ++ D +S G+G+V+F A A
Sbjct: 13 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 71
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ LN LNG+ I V RD L ++ A N+++KN++ + D F F
Sbjct: 72 IDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQDLFIQF 131
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------H 186
G I+S + D +G+ KG+GFV ++N E A KA+E LN LN +++YVG H
Sbjct: 132 GPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMH 191
Query: 187 FLRKQ---ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
L+KQ R ++ K + N++VKNL +S +E L++ F YGTITSA VMR +GKSK
Sbjct: 192 VLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGKSK 251
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F ++A +A+ N + K YV AQ+K R +L Q +
Sbjct: 252 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 301
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F G + S +V R +S G+G+V FS +EA +A+
Sbjct: 211 VNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAIT 269
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A I +N
Sbjct: 270 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 304
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 184/366 (50%), Positives = 258/366 (70%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL +VT+ L+ FN +G V+S+R+CRDL +RRSLGY YVNF +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL+ +NF + GK IR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FS FG IL
Sbjct: 66 KALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIL 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
S KV +D G S+GYGFV + ++ +A +AIE++NG LL D V+V F +++R+ E+
Sbjct: 126 SSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREAELRS 184
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
S+FTNVY+KNL ++ +E L+ F +YG S VM+D +GKSK FGFV+F N + A
Sbjct: 185 KTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAAR 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AVE +NG+ + + +VG+AQKK ER+ ELK +FEQ KE Q A LYIKNLD++I
Sbjct: 245 NAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYIKNLDETI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE L++ FS FGSI KVM++ +G S+G G + F +PE A++A+ EMNG+++ SK L
Sbjct: 305 DDETLRREFSSFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKALN 363
Query: 378 VALAQR 383
+AL Q+
Sbjct: 364 IALGQK 369
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 176/307 (57%), Gaps = 16/307 (5%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQ 166
K A ++++ +L + + L F+ G +LS ++ DL + +S GY +V F + AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQ 65
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
KA++ +N L+ K + L +RD + KS NV++KNL +S + L + F +
Sbjct: 66 KALDTMNFDLIQGKSIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S+ VM D +G S+ +GFV++++ A RA+E +NGK D +V + + + +RE
Sbjct: 122 GKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTVFVDRFKSRKDREA 180
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
EL+ + + N+YIKNL D++DDE LK +FS +G S KVM+D +G S+
Sbjct: 181 ELRSKTSE----------FTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSK 230
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMAST 406
G GFV+F E A A+ EMNG+ + + ++V AQ+K +R+A L+ +F QM+ + +
Sbjct: 231 GFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRAR 290
Query: 407 VAPRMPM 413
A ++ +
Sbjct: 291 QAAKLYI 297
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 176/321 (54%), Positives = 237/321 (73%), Gaps = 6/321 (1%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E+LN+ L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KVA D +G SKGYGFVQF ++ S A NG L+ ++ ++V F+ + + D KS+
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWD----KSR 116
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKNL E+ T+ DL++ FGE+G ITSAVVM+DG+GKS+ FGFVNFE ++ A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDD 319
E +NG D+KE +VG+AQ+K+ R +LK +FE + + +G NLY+KNLDDS+D+
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL++LFS FG+ITSCKVM +GIS+G GFV FST EEAS+A+L+MNGKMV +KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 380 LAQRKEDRRARLQAQFAQMRP 400
LAQ KE + LQ QF P
Sbjct: 297 LAQCKEQHKLHLQTQFNNPPP 317
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 159/291 (54%), Gaps = 27/291 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTA 87
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSG------AGNIFIKNLDKAIDHKALHDTFSAF 135
NF NG IR + H P + + N+++KNL + L F F
Sbjct: 88 ---CNFH--NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEF 142
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S V D G+S+ +GFV F+ E+A AIEK+NG+++++K+++VG RK R T
Sbjct: 143 GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-T 201
Query: 196 EINKSKF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E K+KF N+YVKNL +S L++ F E+GTITS VM +G
Sbjct: 202 EDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGI 261
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
SK GFV F S++A++A+ +NGK +K YV AQ K + +L L+ QF
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 179/313 (57%), Positives = 232/313 (74%), Gaps = 4/313 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+ +RVCRD+ TRRSLGY YVNF +A R
Sbjct: 13 YPMASLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILS
Sbjct: 73 ALDTMNFDTIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CK+ D +G S+GYGFV F+ EE+A+ AIEK+NGMLLN K+V+VG F+ ++ER +
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRERLEVLGDK 191
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR-DGDGKSKCFGFVNFENSDDAA 257
KF NVYVKN SE +E L+ F YG I SA VM DG GK K FGFV+FE+ + A
Sbjct: 192 MRKFNNVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAE 251
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVEALNG K YVG+AQKK ER+ ELK +FE+ E +++QG NLY+KNLDD+I
Sbjct: 252 KAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNLDDNI 311
Query: 318 DDEKLKQLFSPFG 330
DDE+L++ F+ FG
Sbjct: 312 DDERLRKEFAQFG 324
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 17/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L + FS G +L +V D+ +S GY +V F A++A++
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + + + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 77 MNFDTIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 132
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D G S+ +GFV+FE + A A+E +NG + K+ +VG+ + ER LE+
Sbjct: 133 CKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFMSRRER-LEV--- 187
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGF 350
+ + KF N+Y+KN + I+DE L+ +F P+G I S KVM D SG +G GF
Sbjct: 188 ----LGDKMRKFN--NVYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGF 241
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F PE A +A+ +NG K LYV AQ+K +R+A L+ +F ++R
Sbjct: 242 VSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIR 290
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/366 (48%), Positives = 255/366 (69%), Gaps = 4/366 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ SLYVGDL +VT+ L+ F+ +G V+S+R+CRDL ++RSLGY YVNF +A
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+AL +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FS FG I+
Sbjct: 66 KALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIM 125
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV TD G SKGYGFV + + +A +AIE++NG LL + ++V F +++R+ E+
Sbjct: 126 SSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRD 184
Query: 200 --SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
++FTNVY+KN + +E L++ F +YG S VM+D GKSK FGFV+F++ + A
Sbjct: 185 KPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAK 244
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE Q A LYIKNLDD+I
Sbjct: 245 NAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE L++ FS FGSI KVM++ +G S+G G + F +PE A++A+ EMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 378 VALAQR 383
+AL Q+
Sbjct: 364 IALGQK 369
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 174/305 (57%), Gaps = 16/305 (5%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQ 166
K A ++++ +L + + L FS G +LS ++ DL Q S GY +V F AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
KA+ +N ++ K + L +RD + +S NV++KNL +S + L + F +
Sbjct: 66 KALVTMNFDVIKGKSIR----LMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
GTI S+ VM DG+G SK +GFV++++ A RA+E +NGK + +V + + + +RE
Sbjct: 122 GTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREA 180
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
EL+ + + N+YIKN D +DDEKL+++FS +G S KVM+D +G S+
Sbjct: 181 ELRDK----------PTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSK 230
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMAST 406
G GFV+F + E A A+ +MNG+ + + ++V AQ+K +R+A L+ F QM+ + +
Sbjct: 231 GFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRAR 290
Query: 407 VAPRM 411
A ++
Sbjct: 291 QAAKL 295
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/288 (58%), Positives = 225/288 (78%), Gaps = 4/288 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCK+ +D +G S+GYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFV 59
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTT 215
F+ EE+A+ AIEK+NGMLLN K+V+VG F+ ++ER ++ KF NVY+KN SE
Sbjct: 60 HFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEID 119
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L+ F +G I SA VM DGK + FGFV++E + A +AV +N K F++K YV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQK++ER+ ELK +F++ +E +++QG NLY+KNLDDSIDDEKL++ FS FG+ITS
Sbjct: 180 GRAQKRAERQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSA 239
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
KVM + G S+G GFV FS+PEEA++A+ EMNG+++V+KPLYVALAQR
Sbjct: 240 KVMTE-GGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 158/277 (57%), Gaps = 21/277 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S ++ D R GYG+V+F + A A
Sbjct: 13 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSR--GYGFVHFETEEAARNA 70
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LNGK + V + +R L + G N++IKN + ID + L F F
Sbjct: 71 IEKVNGMLLNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETF 130
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I+S KV T +G+ +G+GFV ++ E+A+KA+ ++N +K +YVG ++ ER
Sbjct: 131 GKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQA 190
Query: 196 EI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ N+ + N+YVKNL +S +E L+K F +GTITSA VM +G G+SK
Sbjct: 191 ELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEG-GRSK 249
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
FGFV F + ++A +AV +NG+ K YV AQ+
Sbjct: 250 GFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 120/212 (56%), Gaps = 11/212 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS NV++KNL +S + L +F +G I S ++ D G S+ +GFV+FE
Sbjct: 4 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFE 62
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A A+E +NG + K+ +VG+ + ER EQ M + KF N+YIK
Sbjct: 63 TEEAARNAIEKVNGMLLNGKKVFVGRFMNRRER-------LEQ-MGDKMKKFN--NVYIK 112
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + IDDEKLK F FG I S KVM G RG GFV++ PE A +A+ EMN K
Sbjct: 113 NFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTF 172
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAM 403
K LYV AQ++ +R+A L+ +F +++ M
Sbjct: 173 EEKTLYVGRAQKRAERQAELKDKFDRLKQERM 204
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 177/307 (57%), Positives = 232/307 (75%), Gaps = 5/307 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCKVATD GQSK +GFV
Sbjct: 1 MWSQRDPSSRRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTT 215
++ E+A+ AIE +NGMLLND++VYVG + K++R+++ K+ +TN+YVKN+ +
Sbjct: 61 HYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFS 120
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E+ +K F +GTITS + +D DGKSK FGFVN+E + A +AVE LN K+ + ++ YV
Sbjct: 121 DEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYV 180
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G+AQKK ER ELK Q+E E K+QG NL++KNLDDSID EKL++ F PFGSITS
Sbjct: 181 GRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSA 240
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
KVM D +G S+G GFV FS+PEEA++A+ EMN +M++ KPLYVALAQRK+ RR++L+ Q
Sbjct: 241 KVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQI 300
Query: 396 A---QMR 399
QMR
Sbjct: 301 QARNQMR 307
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 162/290 (55%), Gaps = 19/290 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L + + L+D F+ G+++S +V D +S +G+V++ A+ A A
Sbjct: 13 GDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAA 71
Query: 82 LEMLNFTPLNGKPIRV--MYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V S +D + K+ NI++KN+D + F F
Sbjct: 72 IENVNGMLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSDEEFEKLFVPF 131
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + D +G+SKG+GFV ++ ESA KA+E+LN +N +++YVG +K+ER
Sbjct: 132 GTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERME 191
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N++VKNL +S E L++ F +G+ITSA VM D GKSK
Sbjct: 192 ELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSK 251
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FGFV F + ++A +A+ +N + K YV AQ+K R +L+ Q +
Sbjct: 252 GFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQ 301
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L+K F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K VG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEAS+A+ EMNG++V SK L+V L Q
Sbjct: 321 EFSLFGSISRAKVMME-VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 17/300 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D IDDEKLK+LFS +G S KV+RD +G S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
T E A +A+LE++GK + K L V AQ+K +R A L+ +F +++ T P +P+Y
Sbjct: 248 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK--LKDKTRPPGVPIY 305
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/361 (51%), Positives = 246/361 (68%), Gaps = 5/361 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL
Sbjct: 4 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 63
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF +NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV
Sbjct: 64 MNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 123
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSK 201
D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++
Sbjct: 124 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNV+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV
Sbjct: 183 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 242
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
L+GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEK
Sbjct: 243 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK+ FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L
Sbjct: 303 LKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 361
Query: 382 Q 382
Q
Sbjct: 362 Q 362
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 152/277 (54%), Gaps = 15/277 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKL 172
+++ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +
Sbjct: 5 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 64
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+N K L + D + KS N+++KNL +S L F +G I S
Sbjct: 65 NFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 120
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 121 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR- 178
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV
Sbjct: 179 --------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 230
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
+ T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 231 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 267
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR-GSGFVAFSTPEEASRALL 364
A LY+ +LD + ++ L + F P G + ++ RDP S G G+V F P +A AL
Sbjct: 3 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 62
Query: 365 EMNGKMVVSKPLYVALAQ 382
MN ++ KP + +Q
Sbjct: 63 TMNFDLINGKPFRLMWSQ 80
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 188/358 (52%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
LNGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLLNGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKILYVGRAQKKIERLAELRRRFERLRLKDKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FSPFGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSPFGSISRAKVMME-VGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LLN K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLLNGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KNL D +DDEKLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLA 282
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/287 (58%), Positives = 222/287 (77%), Gaps = 4/287 (1%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +E+A KAIEK+
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
NG+LLND++V+VG F ++ER+ E+ K+K FTNVY+KN E + +L++ F ++G
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 119
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S VMRD GKS+ FGFV++E +DA +AV+ +NGK+ K +VG+AQKK ER+ ELK
Sbjct: 120 SVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKR 179
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ +E ++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GF
Sbjct: 180 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 238
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
V F + EEA++A+ EMNG++V SKPLYVALAQRKE+R+A L Q+ Q
Sbjct: 239 VCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 285
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 169/291 (58%), Gaps = 23/291 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A+E
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 58
Query: 85 LNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNI 138
+N LN + + V + R + GA N++IKN + +D L + FS FG
Sbjct: 59 MNGLLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKT 118
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
LS KV D +G+S+G+GFV ++ E A KA++++NG ++ K ++VG +K ER E+
Sbjct: 119 LSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAEL- 177
Query: 199 KSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK F
Sbjct: 178 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 236
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
GFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q++
Sbjct: 237 GFVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQHV 287
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NV++KNL +S + L +F +G I S V+ D +G SK + FV+FE + A +A+E +
Sbjct: 1 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG +D++ +VG+ + + ERE EL + A +F N+YIKN + +DD LK
Sbjct: 60 NGLLLNDRKVFVGRFKSRKEREAELGAK--------AKEF--TNVYIKNFGEEVDDGNLK 109
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+LFS FG S KVMRD SG SRG GFV++ E+A++A+ EMNGK + K ++V AQ+
Sbjct: 110 ELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQK 169
Query: 384 KEDRRARLQAQFAQMR 399
K +R+A L+ +F Q++
Sbjct: 170 KVERQAELKRKFEQLK 185
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 25/213 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + V D L +LF+Q G+ +SV+V RD S+ +S G+G+V++
Sbjct: 85 GAKAKEF--TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSRGFGFVSYEK 141
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKN 118
++A +A++ +N ++GK I V + R L++ N++IKN
Sbjct: 142 HEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 201
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
LD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 202 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFPSREEATKAVTEMNGRIVG 260
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER K+ TN Y+++++
Sbjct: 261 SKPLYVALAQRKEER-----KAHLTNQYMQHVA 288
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 188/358 (52%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+A+VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++ L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL + +E L++ F EYG I S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD+SIDDEKLK+
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SK L+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQ 377
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDADVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRGLFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KNL D ++DEKLK+LFS +G I S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+LE++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLA 282
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 102/178 (57%), Gaps = 20/178 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V +L ++ D +L +LF++ GQ+ SV+V RD S +S G+G+V + + A +A+
Sbjct: 199 TNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASG-KSKGFGFVKYETHEAAQKAVL 257
Query: 84 MLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHK 126
L+ ++GK + V + + R G I+IKNLD++ID +
Sbjct: 258 ELHGKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDESIDDE 316
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L + FS+FG+I KV ++ GQ KG+G V F + E A KA++++NG L+ K ++V
Sbjct: 317 KLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHV 373
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/358 (51%), Positives = 237/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK ID++AL FSAFGNILSCKV D
Sbjct: 81 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD 140
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ ++ FTN
Sbjct: 141 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTN 199
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L K F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 200 VFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 259
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K VG+AQKK ER EL+ +FE+ + ++ G +YIKNLD++I+DEKLK+
Sbjct: 260 GKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKE 319
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA +A+ EMNG+++ SK L+V L Q
Sbjct: 320 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQ 376
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 155/285 (54%), Gaps = 15/285 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 21 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 80
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL ++ L F +G I S V
Sbjct: 81 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKV 136
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 137 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 192
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
++ N+++KN D IDDEKL +LFS +G S KV+RD +G S+G GFV +
Sbjct: 193 ------ERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYE 246
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
T E A +A+LE++GK + K L V AQ+K +R A L+ +F +++
Sbjct: 247 THEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK 291
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/397 (44%), Positives = 254/397 (63%), Gaps = 19/397 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N + A +A+E
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIES 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM 145
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINKS 200
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R + +
Sbjct: 146 QDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-VA 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+K + + ++E ++K F ++G ITSA +D G + F F NFE DDA +AV
Sbjct: 205 NFTNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAV 262
Query: 261 EALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
EA++ D ++ YV +AQ +SER + L+ ++ Q+ G NLY++N D
Sbjct: 263 EAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFDP 316
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
L +LF +G + SC+VM SG SRG GFV+FS +EA+ AL EMNG+M+ KP
Sbjct: 317 EFTGADLLELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKP 376
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
L V +AQR++ R L+ QF Q R M T+ MP
Sbjct: 377 LIVNIAQRRDQRYTMLRLQF-QQRLQMMMRTMHQPMP 412
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 126/258 (48%), Gaps = 26/258 (10%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N + A +A
Sbjct: 23 QIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK + Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDKCVRLMWQQ-----------------RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM--PMYPPGAWIWLSAAACSWYEA 432
LYVA R+ R A L A F + + TV+ + + I SAAAC
Sbjct: 186 ALYVANFIRRNARLAALVANFTNVYIKQVLPTVSKEVIEKFFAKFGGIT-SAAACKDKSG 244
Query: 433 RWGSHAKFLCADSSARAA 450
R + F D + +A
Sbjct: 245 RVFAFCNFEKHDDAVKAV 262
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V+ + F + G + S C+D S R + + NF +A +A+E
Sbjct: 207 TNVYIKQVLPTVSKEVIEKFFAKFGGITSAAACKDKSGRV---FAFCNFEKHDDAVKAVE 263
Query: 84 MLNFTPLNG--KPIRVMY-------SHRDPSLR------KSGAGNIFIKNLDKAIDHKAL 128
++ ++G P +Y S R +LR +S N++++N D L
Sbjct: 264 AMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADL 323
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ F +G++ SC+V +G S+G+GFV F N + A A+ ++NG +LN K + V
Sbjct: 324 LELFKEYGDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Query: 189 RKQERDT 195
R+ +R T
Sbjct: 384 RRDQRYT 390
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 175/397 (44%), Positives = 253/397 (63%), Gaps = 19/397 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A +A+E
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM 145
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINKS 200
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R + +
Sbjct: 146 QDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-VA 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+K + + ++ ++K F ++G ITSA +D G + F F NFE DDA +AV
Sbjct: 205 NFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAV 262
Query: 261 EALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
EA++ D ++ YV +AQ +SER + L+ ++ Q+ + G NLY++N D
Sbjct: 263 EAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFDP 316
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
L +LF +G + SC+VM SG+SRG GFV+FS +EA+ AL EMNG+M+ KP
Sbjct: 317 EFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKP 376
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
L V +AQR++ R L+ QF Q + M P MP
Sbjct: 377 LIVNIAQRRDQRYTMLRLQFQQRLQMMMRQMHQP-MP 412
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N D A +A
Sbjct: 23 QIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK + Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDKCVRLMWQQ-----------------RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTV 407
LYVA R+ R A L A F + + TV
Sbjct: 186 ALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V + F + G + S C+D S R + + NF +A +A+E
Sbjct: 207 TNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSGRV---FAFCNFEKHDDAVKAVE 263
Query: 84 MLNFTPLNG--KPIRVMY-------SHRDPSLR------KSGAGNIFIKNLDKAIDHKAL 128
++ ++G P +Y S R +LR ++ N++++N D L
Sbjct: 264 AMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADL 323
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ F +G + SC+V +G S+G+GFV F N + A A+ ++NG +LN K + V
Sbjct: 324 LELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Query: 189 RKQERDT 195
R+ +R T
Sbjct: 384 RRDQRYT 390
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 177/397 (44%), Positives = 250/397 (62%), Gaps = 19/397 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A RA+E
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIES 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + K +R+M+ RDPSLR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 86 MNFRRVGDKCVRLMWQQRDPSLRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM 145
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINKS 200
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R + +
Sbjct: 146 EDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-VA 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+K + + +E ++ F ++G ITSA +D G + F F NFE DDA +AV
Sbjct: 205 NFTNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAV 262
Query: 261 EALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
EA++ D ++ YV +AQ +SER + L+ ++ Q+ G NLY++N D
Sbjct: 263 EAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFDP 316
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
L +LF +G + SC+VM SG SRG GFV+FS +EA+ AL EMNG+M+ KP
Sbjct: 317 EFTGADLLELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKP 376
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
L V +AQR++ R L+ QF Q + M P MP
Sbjct: 377 LIVNIAQRRDQRYTMLRLQFQQRLQMMMRQMHQP-MP 412
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 23/201 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N A RA
Sbjct: 23 QIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N ++ DK + Q ++ + ++ G N+++KNL+ +D
Sbjct: 83 IESMNFRRVGDKCVRLMWQQ-----------------RDPSLRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARLQAQF 395
LYVA R+ R A L A F
Sbjct: 186 ALYVANFIRRNARLAALVANF 206
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V + + F + G + S C+D S R + + NF +A +A+E
Sbjct: 207 TNVYIKQVLPTVNKEVIENFFAKFGGITSAAACKDKSGR---VFAFCNFEKHDDAVKAVE 263
Query: 84 MLNFTPLNG--KPIRVMY-------SHRDPSLR------KSGAGNIFIKNLDKAIDHKAL 128
++ ++G P +Y S R +LR +S N++++N D L
Sbjct: 264 AMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADL 323
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ F +G++ SC+V +G S+G+GFV F N + A A+ ++NG +LN K + V
Sbjct: 324 LELFKEYGDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Query: 189 RKQERDT 195
R+ +R T
Sbjct: 384 RRDQRYT 390
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTP 356
+ + Q A++Y+ +LD +I++ +L +LF PFG+I + +V RD + S G G+V F
Sbjct: 17 QVSKPMQIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNH 76
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
A RA+ MN + V K + + QR R
Sbjct: 77 HSAERAIESMNFRRVGDKCVRLMWQQRDPSLR 108
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSMDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK+LFS +G S KV+RD G S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLA 282
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ E +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ + IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK V K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG+ S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+++ SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 377
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 164/300 (54%), Gaps = 17/300 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +GS S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
T E A +A+L+++GK + K LYV AQ+K +R A L+ +F ++ + AP +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKSRAPGVPIY 305
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEAS+A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 176/397 (44%), Positives = 251/397 (63%), Gaps = 19/397 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A +A+E
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM 145
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINKS 200
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R + +
Sbjct: 146 QDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-VA 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+K + + +E ++K F ++G ITSA +D G + F F NFE DDA +AV
Sbjct: 205 NFTNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAV 262
Query: 261 EALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
EA++ D ++ YV +AQ +SER + L+ ++ Q+ G NLY++N D
Sbjct: 263 EAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQS------LGNNLYVRNFDP 316
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
L +LF +G + SC+VM SG SRG GFV+FS +EA+ AL EMNG+M+ KP
Sbjct: 317 EFTGADLLELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKP 376
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
L V +AQR++ R L+ QF Q + M P MP
Sbjct: 377 LIVNIAQRRDQRYTMLRLQFQQRLQMMMRQMHQP-MP 412
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N D A +A
Sbjct: 23 QIASIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK + Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDKCVRLMWQQ-----------------RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTV 407
LYVA R+ R A L A F + + TV
Sbjct: 186 ALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 18/187 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V + F + G + S C+D S R + + NF +A +A+E
Sbjct: 207 TNVYIKQVLPTVNKEVIEKFFAKFGGITSAAACKDKSGRV---FAFCNFEKHDDAVKAVE 263
Query: 84 MLNFTPLNG--KPIRVMY-------SHRDPSLR------KSGAGNIFIKNLDKAIDHKAL 128
++ ++G P +Y S R +LR +S N++++N D L
Sbjct: 264 AMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADL 323
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ F +G + SC+V +G S+G+GFV F N + A A+ ++NG +LN K + V
Sbjct: 324 LELFKEYGEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Query: 189 RKQERDT 195
R+ +R T
Sbjct: 384 RRDQRYT 390
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/358 (50%), Positives = 237/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIK+LDK+ID++ L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL ++ +E L++ F EYG S V+RD GKSK FGFV +E + A ++V L+
Sbjct: 201 VFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKTIDGKVLYVGRAQKKIERLAELRRRFERLKLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G V FS+ EEA++A+ EMNG ++ SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMME-MGQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQ 377
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 17/300 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +L + L+ F G + ++ D S GYG+V F A+ A+ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++K+L +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KNL D++DDEKLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
T E A +++L+++GK + K LYV AQ+K +R A L+ +F +++ + P +P+Y
Sbjct: 248 THEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELRRRFERLK--LKEKSRPPGVPIY 305
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/303 (54%), Positives = 223/303 (73%), Gaps = 7/303 (2%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 59
Query: 183 YVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG++G S VM D G
Sbjct: 60 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 119
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
KSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++
Sbjct: 120 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 179
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA+
Sbjct: 180 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 238
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPG 417
+A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q A + P P P G
Sbjct: 239 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 298
Query: 418 AWI 420
++
Sbjct: 299 YFM 301
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 164/281 (58%), Gaps = 23/281 (8%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
+ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N LN +
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 58
Query: 95 IRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN 148
+ V + R + GA N++IKN + +D + L + F FG LS KV TD +
Sbjct: 59 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES 118
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF------ 202
G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ K KF
Sbjct: 119 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQD 177
Query: 203 -------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV F + ++
Sbjct: 178 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEE 236
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 237 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 277
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF + G +SV+V D S +S G+G+V+F
Sbjct: 75 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFER 131
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 132 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 190
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 191 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 249
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 250 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 278
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 242/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV +D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
+G SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 HG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD+SI DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VSDDHG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMLE-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/397 (43%), Positives = 253/397 (63%), Gaps = 19/397 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVGDL+A + + QL +LF G +++VRVCRD+ T+RSLGYGYVNF N A +A+E
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIES 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + K +R+M+ RDP+LR SG GN+F+KNL+K +D K+LHD F+ FG+ILSCKV
Sbjct: 86 MNFKRVGDKCVRLMWQQRDPALRYSGNGNVFVKNLEKDVDSKSLHDIFTKFGSILSCKVM 145
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRKQERDTEINKS 200
D G+S+GYGFV F +E SA+ AI K+NG + K +YV +F+R+ R + +
Sbjct: 146 QDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAAL-VA 204
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+K + + ++ ++K F ++G ITSA +D G + F F NFE DDA +AV
Sbjct: 205 NFTNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAV 262
Query: 261 EALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
EA++ D ++ YV +AQ +SER + L+ ++ Q+ + G NLY++N D
Sbjct: 263 EAMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQH------QALGNNLYVRNFDP 316
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
L +LF +G + SC+VM SG+SRG GFV+FS +EA+ AL EMNG+M+ KP
Sbjct: 317 EFTGADLLELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKP 376
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
L V +AQR++ R ++ QF Q + M P MP
Sbjct: 377 LIVNIAQRRDQRYTIVRLQFQQRLQMMMRQMHQP-MP 412
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARA 259
+ ++YV +L + E L + F +GTI + V RD +S +G+VNF+N D A +A
Sbjct: 23 EIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKA 82
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG-ANLYIKNLDDSID 318
+E++N K+ DK + Q ++ A ++ G N+++KNL+ +D
Sbjct: 83 IESMNFKRVGDKCVRLMWQQ-----------------RDPALRYSGNGNVFVKNLEKDVD 125
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS----K 374
+ L +F+ FGSI SCKVM+D G SRG GFV F A A+++MNG + K
Sbjct: 126 SKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKK 185
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTV 407
LYVA R+ R A L A F + + TV
Sbjct: 186 ALYVANFIRRNARLAALVANFTNVYIKQVLPTV 218
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V + F + G + S C+D S R + + NF +A +A+E
Sbjct: 207 TNVYIKQVLPTVNKDVIEKFFAKFGGITSAAACKDKSGRV---FAFCNFEKHDDAVKAVE 263
Query: 84 MLNFTPLNG--KPIRVMY-------SHRDPSLR------KSGAGNIFIKNLDKAIDHKAL 128
++ ++G P +Y S R +LR ++ N++++N D L
Sbjct: 264 AMHDHHIDGITAPGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNFDPEFTGADL 323
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ F +G + SC+V +G S+G+GFV F N + A A+ ++NG +LN K + V
Sbjct: 324 LELFKEYGEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQ 383
Query: 189 RKQERDTEI 197
R+ +R T +
Sbjct: 384 RRDQRYTIV 392
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID+++L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +K+ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKNL + +E L+ F EYG S ++RD GKSK FGFV +E D A +AV L+
Sbjct: 201 VFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++ID+EKLK+
Sbjct: 261 GKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G + FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSAFGSISRAKVMME-VGQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQ 377
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRSLFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
DK N+++KNL D +DDEKLK LFS +G S K++RD SG S+G GFV +
Sbjct: 194 ------DKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T + A +A+L+++GK V K LYV AQ+K +R A
Sbjct: 248 THDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 20/178 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V +L ++ D +L LF++ GQ SV++ RD S +S G+G+V + A +A+
Sbjct: 199 TNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASG-KSKGFGFVRYETHDAAQKAVL 257
Query: 84 MLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHK 126
L+ ++GK + V + + R G I+IKNLD+ ID +
Sbjct: 258 DLHGKSVDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDETIDEE 316
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L + FSAFG+I KV ++ GQ KG+G + F + E A KA+E++NG L+ K ++V
Sbjct: 317 KLKEEFSAFGSISRAKVMMEV-GQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHV 373
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGDILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/413 (44%), Positives = 262/413 (63%), Gaps = 9/413 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT+ L F+ V+SV +CR+ T +SL Y Y+NF + A+ A+
Sbjct: 22 SLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYINFDSPFSASNAMAR 81
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRK-SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN T L GK +R+M+S RD S R+ +G GN+++KNLD +I L F+ FG ILSCKV
Sbjct: 82 LNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKV 141
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
+ NGQSKG+GFVQF+ E+SA A L+G +++ K+++V F+ K ER FT
Sbjct: 142 VEE-NGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVAMAGNKGFT 200
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL E+ TE+ L + F +YGT++S VVMRDG G+S+ FGFVNF + ++A +AV++L
Sbjct: 201 NVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
+G++ K +VGKA K+ ER LKH++ N A + +NLY+KNL +S++D L+
Sbjct: 261 HGRQVGSKTLFVGKALKRDERREMLKHKYRDNFI-AKSNMRWSNLYVKNLSESMNDTTLR 319
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
++F +G I S KVMR +G S+G GFV FS EE+ +A +NG V K L V +A+R
Sbjct: 320 EIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAER 379
Query: 384 KEDRRARLQAQF-AQMRPVAMASTV-APRMPM--YPPGAWIWLSA--AACSWY 430
KEDR RLQ F AQ R A V +P P+ Y P ++ +L S+Y
Sbjct: 380 KEDRLKRLQQYFHAQPRHYTQAPLVPSPAQPVLSYVPSSYGYLQPFHVGASYY 432
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 160/287 (55%), Gaps = 17/287 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +LYV +L+ ++T S L +FN G ++S +V + +S G+G+V F Q A A
Sbjct: 108 GFGNLYVKNLDISITSSGLERMFNPFGVILSCKVVEE--NGQSKGFGFVQFETEQSAVTA 165
Query: 82 LEMLNFTPLNGKPIRVM----YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
L+ + ++GK + V + R G N+++KNL + I LH FS +G
Sbjct: 166 RSALHGSMVDGKKLFVAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGT 225
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE----- 192
+ S V D G+S+G+GFV F + E+A+KA++ L+G + K ++VG L++ E
Sbjct: 226 VSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREML 285
Query: 193 ----RDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
RD I KS +++N+YVKNLSES + L++ FG YG I SA VMR +G+SK FG
Sbjct: 286 KHKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFG 345
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
FV F N +++ +A LNG D K V A++K +R L+ F
Sbjct: 346 FVCFSNREESKQAKRYLNGFSVDGKLLVVRVAERKEDRLKRLQQYFH 392
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N N A A G T++YV +L N+T+ L+ LF+Q G V SV V RD RS G+G+
Sbjct: 186 NKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRD-GMGRSRGFGF 244
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPI-----------RVMYSH--RDPSLRKSGA--GNI 114
VNF + + A +A++ L+ + K + R M H RD + KS N+
Sbjct: 245 VNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNL 304
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
++KNL ++++ L + F +G I+S KV NG+SKG+GFV F N E +++A LNG
Sbjct: 305 YVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNG 364
Query: 175 MLLNDKQVYVGHFLRKQER 193
++ K + V RK++R
Sbjct: 365 FSVDGKLLVVRVAERKEDR 383
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 104/202 (51%), Gaps = 21/202 (10%)
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVN 249
Q + + S F ++YV +LS TE+DL F + S + R+ GKS C+ ++N
Sbjct: 9 QALENHQHSSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAYIN 68
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGAN 307
F++ A+ A+ LN GKA + S+R+L + + N
Sbjct: 69 FDSPFSASNAMARLNHTDLK------GKAMRIMWSQRDLSYRR-----------RTGFGN 111
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLD SI L+++F+PFG I SCKV+ + +G S+G GFV F T + A A ++
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVEE-NGQSKGFGFVQFETEQSAVTARSALH 170
Query: 368 GKMVVSKPLYVALAQRKEDRRA 389
G MV K L+VA K +R A
Sbjct: 171 GSMVDGKKLFVAKFINKNERVA 192
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 241/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +K+ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + ++ L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G + FS+ EEA++A+ EMNG++V SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 151/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G+I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
DK N+++KN D +DD+KLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 239/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL + L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 239/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 149/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL + L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKCIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 183/358 (51%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ E+A++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTK--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 242/360 (67%), Gaps = 9/360 (2%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFG+ILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN + ++ L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGF--VAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + + +G GF V FS+ EEA++A+ EMNG++V SKPL V L Q
Sbjct: 321 EFSSFGSISRAKVMVE---VEQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 163/300 (54%), Gaps = 17/300 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G+I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DD+KLK+LFS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
T E A +A+L+++GK + K LYV AQ+K +R A L+ +F ++ T P +P+Y
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERL--RLKEKTRPPGVPIY 305
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/358 (51%), Positives = 239/358 (66%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN +E L++ F YG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK + K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+
Sbjct: 261 GKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ E+A++A+ EMNG+ V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN + +DDEKLK++FS +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/391 (45%), Positives = 252/391 (64%), Gaps = 30/391 (7%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY F+ G ++S+RVCRD+ TRRSLGY Y+NF Q+ A
Sbjct: 8 YPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINF---QQPAD 64
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD--------TF 132
E + GK Y R+ GA +++L + +H L
Sbjct: 65 GSEEVG----RGK---HFYQEHGRVHRQQGA----VRHLLRIREHSVLQGKGQRCQGLCR 113
Query: 133 SAFGNILS----CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
A G++ +V D G SKGYGFV F+ EE+A +AIE +NGMLLND++V+VG+F
Sbjct: 114 DAGGDVTGRTALFQVVCDERG-SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFK 172
Query: 189 RKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
++ER+ E+ KFTNVY+KN E T+E L++ F +G S VM+D G+S+ FG
Sbjct: 173 SRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFG 232
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FVNF + DA +AV+ +NG + + K YVG+AQK+ ER+ ELK +FE ++ ++QG
Sbjct: 233 FVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV 292
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NLY+KNLDD IDDE+L++ F+P+G+ITS KVM D SRG GFV FS+PEEA++A+ EM
Sbjct: 293 NLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEM 351
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
NG++V +KPLYVALAQR+E+R+A L ++ Q
Sbjct: 352 NGRIVATKPLYVALAQRREERKAILTNKYMQ 382
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 36/300 (12%)
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-- 111
VC + R S GYG+V+F + A RA+E +N LN + + V + R + G+
Sbjct: 129 VCDE---RGSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEELGSKA 185
Query: 112 ---GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
N++IKN + + L + FSAFG LS +V D G+S+G+GFV F + AQKA
Sbjct: 186 LKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKA 245
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTT 215
++++NG LN K +YVG ++ ER E+ K KF N+YVKNL +
Sbjct: 246 VDEMNGTELNGKVIYVGRAQKRLERQGEL-KRKFELIKQDRIQRYQGVNLYVKNLDDGID 304
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L+K F YGTITSA VM DG +S+ FGFV F + ++A +AV +NG+ K YV
Sbjct: 305 DERLRKEFAPYGTITSAKVMTDGP-QSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 363
Query: 276 GKAQKKSERELELKHQFEQNM-------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
AQ++ ER+ L +++ Q + D +Q A Y+ ++ + +SP
Sbjct: 364 ALAQRREERKAILTNKYMQRLATLRTMSSPVIDSYQQAGYYM-----TVPQPPTRSFYSP 418
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 122/218 (55%), Gaps = 27/218 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G+ A +F T++Y+ + + TD +L ++F+ G+ +SVRV +D RS G+G+VNF++
Sbjct: 182 GSKALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAH 238
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
+A +A++ +N T LNGK I V + + D R G N+++K
Sbjct: 239 HGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVK 297
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L F+ +G I S KV TD QS+G+GFV F + E A KA+ ++NG ++
Sbjct: 298 NLDDGIDDERLRKEFAPYGTITSAKVMTD-GPQSRGFGFVCFSSPEEATKAVTEMNGRIV 356
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTT 215
K +YV R++ER K+ TN Y++ L+ T
Sbjct: 357 ATKPLYVALAQRREER-----KAILTNKYMQRLATLRT 389
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 179/383 (46%), Positives = 246/383 (64%), Gaps = 34/383 (8%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +
Sbjct: 4 APKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF +NGK IR+M+S RD LR+SG GN
Sbjct: 64 AQKALDTMNFDVVNGKSIRLMWSQRDAYLRRSGIGN------------------------ 99
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
V +D G SKGY FV F N+ +A +AIE++NG L D +V+VG F +++R+ E+
Sbjct: 100 -----VMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAEL 153
Query: 198 -NKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
NK+ +FTNVY+KN E +E L++ F +YG S VM D GKSK FGFV+F+N +
Sbjct: 154 RNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEA 213
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AV+ +NGK + + +VG+AQKK ER+ ELK FEQ KE QG LYIKNLDD
Sbjct: 214 AKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDD 273
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL++ FS FGSI+ KVM++ G S+G G + FS+ EEA++A+ EMNG ++ SKP
Sbjct: 274 TIDDEKLRKEFSSFGSISRVKVMQE-GGQSKGFGLICFSSLEEATKAMTEMNGHILGSKP 332
Query: 376 LYVALAQRK-EDRRARLQAQFAQ 397
L +ALA R +R+ L Q+ Q
Sbjct: 333 LSIALAHRHYXERKIYLTRQYLQ 355
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 152/289 (52%), Gaps = 45/289 (15%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ DL +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N K + L +RD + +S NV
Sbjct: 71 MNFDVVNGKSIR----LMWSQRDAYLRRSGIGNV-------------------------- 100
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
M D G SK + FV+F+N A RA+E +NG++ D + +VG+ + + +RE EL+++
Sbjct: 101 ---MSDDQG-SKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNK 156
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDEKLK++FS +G S KVM D SG S+G GFV
Sbjct: 157 --------AGEF--TNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFV 206
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRP 400
+F E A +A+ EMNGK + + ++V AQ+K +R+A L+ F Q++
Sbjct: 207 SFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKK 255
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 154/275 (56%), Positives = 202/275 (73%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL V+DS L F+++G V+S RVCRDL+TR+SLGYGYVNF + + A +ALE
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+LN+ PL G+PIR+M+S RDPSLRKSG GNIFIKNLDK+I+ K L+DTFS FG ILSCK+
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
D NGQSKGYGFV F+ EE A++AIEK+N M++ D+ VYVG F+ K ER ++ K KF
Sbjct: 133 VMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQARKVKFN 192
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YVKN T E L++ F E+G I SA VM+D +GKSK FGFV + + D A AV +
Sbjct: 193 NLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTM 252
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+GK+ + + Y +AQ+K ER+ ELK + E+ E
Sbjct: 253 HGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAE 287
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 171/311 (54%), Gaps = 18/311 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + AL FS G +LS +V DL QS GYG+V F++ + A++A+E
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L + + + +RD + KS N+++KNL +S +++L +F +G I S
Sbjct: 74 LNYEPLMGRPIRIMW----SQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGRILS 129
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
++ D +G+SK +GFV+FE + A RA+E +N D+ YVGK K+ER
Sbjct: 130 CKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTER------- 182
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
K A K + NLY+KN D+EKLK++FS FG I S VM+D G S+G GFV
Sbjct: 183 -----KSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM 411
+ P+ A A+ M+GK + + LY A AQRKE+R+ L+ + + R S + +M
Sbjct: 238 CYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQR-AERQSRLYVQM 296
Query: 412 PMYPPGAWIWL 422
Y W+ +
Sbjct: 297 STYTLKTWMII 307
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 100/185 (54%), Gaps = 11/185 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ +LYD F+ G+++S ++ D +S GYG+V+F + A RA
Sbjct: 99 GKGNIFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERA 157
Query: 82 LEMLNFTPLNGKPIRVMY-------SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134
+E +N + RV+Y + R RK N+++KN D++ L + FS
Sbjct: 158 IEKINNMIIRD---RVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSE 214
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG I S V D G+SKG+GFV + + + A+ A+ ++G + + +Y RK+ER
Sbjct: 215 FGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Query: 195 TEINK 199
E+ +
Sbjct: 275 EELKQ 279
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 181/423 (42%), Positives = 265/423 (62%), Gaps = 9/423 (2%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA V+ + Q + G ++++FG SLYVGDL +VT+ L D F+ VVSV +CR+
Sbjct: 1 MALVKTETQAL-GNHQHSSRFG--SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSV 57
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK---SGAGNIFIK 117
T +S+ Y Y+NF + A+ A+ LN + L GK +R+M+S RD + R+ +G N+++K
Sbjct: 58 TGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVK 117
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD +I L F FG+ILSCKV + NGQSKG+GFVQFD E+SA A L+G ++
Sbjct: 118 NLDSSITSSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMV 176
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
K+++V F+ K ER TNVYVKNL E+ T++ L F +YGT++S VVMRD
Sbjct: 177 YGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD 236
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
G G+S+ FGFVNF N ++A +A+E+L G + K+ +VGKA KK ER LK +F N
Sbjct: 237 GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFI 296
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
A + +NLY+KNL +S+++ +L+++F +G I S KVM +G S+G GFV FS E
Sbjct: 297 -AKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCE 355
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
E+ +A +NG +V KP+ V +A+RKEDR RLQ Q+ Q +P + P P
Sbjct: 356 ESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQ-QYFQAQPRQYTQAPSAPSPAQPVL 414
Query: 418 AWI 420
+++
Sbjct: 415 SYV 417
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/182 (88%), Positives = 174/182 (95%), Gaps = 1/182 (0%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
MRDGDGKS+CFGFVNFEN+DDAA+A EALNGKKFDDKEW+VGKAQKK ERE+ELK +FEQ
Sbjct: 1 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQ 60
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+MKEAADKFQGANLYIKNLDDSI DEK+K+LFSPFG+ITSCKVMRDP+GISRGSGFVAFS
Sbjct: 61 SMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFS 120
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMY 414
TPEEASRALLEMNGKMV SKPLYVALAQRKEDRRARLQAQF+QMRPVAMA +V RMPMY
Sbjct: 121 TPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVG-RMPMY 179
Query: 415 PP 416
PP
Sbjct: 180 PP 181
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 12/161 (7%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------- 197
D +G+S+ +GFV F+N + A KA E LNG +DK+ +VG +K ER+ E+
Sbjct: 3 DGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSM 62
Query: 198 ----NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+K + N+Y+KNL +S +E +++ F +GTITS VMRD +G S+ GFV F
Sbjct: 63 KEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTP 122
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
++A+RA+ +NGK K YV AQ+K +R L+ QF Q
Sbjct: 123 EEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQ 163
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD +I + + + FS FG I SCKV D NG S+G GFV F E A +A+ ++
Sbjct: 73 NLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEM 132
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
NG ++ K +YV RK++R + +++F+ + ++ S
Sbjct: 133 NGKMVASKPLYVALAQRKEDRRARL-QAQFSQMRPVAMAPSV 173
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A++F +LY+ +L+ ++ D ++ +LF+ G + S +V RD S G G+V FS +E
Sbjct: 66 ADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRD-PNGISRGSGFVAFSTPEE 124
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RAL +N + KP+ V + R
Sbjct: 125 ASRALLEMNGKMVASKPLYVALAQR 149
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 156/229 (68%), Positives = 190/229 (82%)
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML+NDKQV V F+R+QER+ +KF NV+VKNL+E TT+EDL + FG +G I+SAV
Sbjct: 1 GMLINDKQVVVTPFVRRQERELTNAATKFNNVFVKNLAEETTDEDLMEVFGGFGPISSAV 60
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VMRD +G SKCFGFVNF+N+DDAA+AVE +NGK F+DKEWYVG+AQKKSERE ELK +FE
Sbjct: 61 VMRDANGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFE 120
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
Q KE +KFQG NLY+KN+DDSIDDEKLK+LFS FG++ SCK+MR P G GSGFVA
Sbjct: 121 QLRKERTEKFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVAL 180
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVA 402
S+ +EA RA+ EMNGKMV SKPLYVA+AQRK++RRA+LQAQFAQ+R V
Sbjct: 181 SSKDEAMRAVNEMNGKMVGSKPLYVAVAQRKDERRAKLQAQFAQLRNVV 229
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+F+KNL + + L + F FG I S V D NG SK +GFV F N + A KA+E +
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENI 90
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG + NDK+ YVG +K ER+ E+ K KF N+Y+KN+ +S +E L
Sbjct: 91 NGKVFNDKEWYVGRAQKKSEREAEL-KVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKL 149
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
++ F +GT+ S +MR G+ GFV + D+A RAV +NGK K YV AQ
Sbjct: 150 KELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQ 209
Query: 280 KKSERELELKHQFEQ 294
+K ER +L+ QF Q
Sbjct: 210 RKDERRAKLQAQFAQ 224
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L TD L ++F G + S V RD + S +G+VNF NA +AA+A+E
Sbjct: 31 NVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRD-ANGNSKCFGFVNFKNADDAAKAVEN 89
Query: 85 LNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKAL 128
+N N K V S R+ L+ K N+++KN+D +ID + L
Sbjct: 90 INGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKL 149
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188
+ FS FG + SCK+ GQ G GFV +++ A +A+ ++NG ++ K +YV
Sbjct: 150 KELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQ 209
Query: 189 RKQERDTEI 197
RK ER ++
Sbjct: 210 RKDERRAKL 218
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+F +LY+ +++ ++ D +L +LF+ G V S ++ R + +G G+V S+ EA
Sbjct: 129 KFQGVNLYLKNVDDSIDDEKLKELFSGFGTVNSCKIMRS-PQGQIVGSGFVALSSKDEAM 187
Query: 80 RALEMLNFTPLNGKPIRVMYSHR 102
RA+ +N + KP+ V + R
Sbjct: 188 RAVNEMNGKMVGSKPLYVAVAQR 210
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 181/355 (50%), Positives = 236/355 (66%), Gaps = 8/355 (2%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYV 207
NG SKGY +V FD+ +A +AI +NG+ LN++QVY +R ++R T FTNV+V
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYRAAEVRTRDRAT------FTNVFV 194
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KN + +E L+ F EYG S V+RD GKSK FGFV +E + A +AV L+GK
Sbjct: 195 KNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKS 254
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++IDDEKLK+ FS
Sbjct: 255 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEKLKEEFS 314
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FGSI+ KVM + G +G G V +S+ EEA++A+ EMNG+++ SKPL+V L Q
Sbjct: 315 SFGSISRAKVMVE-VGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 368
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 144/275 (52%), Gaps = 24/275 (8%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ Y R E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY---------RAAEVRTR--- 184
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN D +DDEKLK +FS +G S KV+RD SG S+G GFV +
Sbjct: 185 ------DRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYE 238
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 239 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 273
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/346 (51%), Positives = 234/346 (67%), Gaps = 5/346 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMW 61
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D NG SKGY +V F
Sbjct: 62 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHF 120
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTNVYVKNLSESTTE 216
D+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTNV+VKN+ + +
Sbjct: 121 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDD 180
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+GK D K YVG
Sbjct: 181 EKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 240
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+ FS FGSI+ K
Sbjct: 241 RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAK 300
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
VM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 301 VMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 345
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 145/263 (55%), Gaps = 15/263 (5%)
Query: 128 LHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L+ F G + ++ D +S GYG+V F A+ A+ +N L+N K
Sbjct: 2 LYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFR--- 58
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
L + D + KS N+++KNL +S L F +G I S V+ D +G SK +
Sbjct: 59 -LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYA 116
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
+V+F++ A RA+ +NG + ++++ YVG+ + ER E++ + D+
Sbjct: 117 YVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFT 167
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV + T E A +A+L++
Sbjct: 168 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 227
Query: 367 NGKMVVSKPLYVALAQRKEDRRA 389
+GK + K LYV AQ+K +R A
Sbjct: 228 HGKSIDGKVLYVGRAQKKIERLA 250
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 248/393 (63%), Gaps = 26/393 (6%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
Q V G + SLYVGDL+ + + QL D+F G +++VRVCRD+ T+RSLGY
Sbjct: 5 AQGVPSGPSATKPLQVASLYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGY 64
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
GYVN+ + A++A+E LNF + K IR+M+ RDP+LR SG+GNIF+KNL + +D +
Sbjct: 65 GYVNYDDVNSASKAMEELNFKRVGEKCIRIMWQQRDPALRYSGSGNIFVKNLKEEVDSRE 124
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ------ 181
L F FG ILSCKV D +G+S+GYGFV F ++++A+ AIEK+NG DK+
Sbjct: 125 LSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNG----DKEHADADK 180
Query: 182 --VYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
+YV +F+R+ R + + FTNVY+K L + ++ ++K F ++G ITSA + +D +
Sbjct: 181 AALYVANFIRRNARLAAL-VANFTNVYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKN 239
Query: 240 GKSKCFGFVNFENSDDAARAVEA-----LNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
G++ F F NFE DDA +A+EA + G ++ YV +AQ +SER + L+ ++ Q
Sbjct: 240 GRA--FAFCNFEKHDDAVKAIEASHDQEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQ 297
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
G NLY++N D ++ L +LF +G I SC+VM D +GISRG GFV+F
Sbjct: 298 CQS------LGNNLYVRNFDAEFTEKDLNELFKEYGVIRSCRVMTDANGISRGFGFVSFE 351
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
++A+ AL EMNG+M+ KPL V +AQR++ R
Sbjct: 352 NADQANAALREMNGRMLNGKPLVVNIAQRRDQR 384
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 237/356 (66%), Gaps = 6/356 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ VT++ L F +G + S+R+CR T +SL Y YVN + +A+RAL +
Sbjct: 18 SLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGL 77
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN T L GKP+R+M+ RDP RK+G N+F+KNLD +I L FS +G ILSCKVA
Sbjct: 78 LNHTNLKGKPMRIMWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTILSCKVA 137
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ NG+SKG+GFVQF++++SA A L+ +L K+++V F++K ER FTN
Sbjct: 138 GE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTAAAPCEVFTN 196
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YVKNL E+ TE+ L+ F G ++S +M D +GKSK FGFVNF++ DDA +AV+ +N
Sbjct: 197 LYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMN 256
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G K +VGKAQ+KSER + LK +++ + +K + +NLY+KNL+ IDD+KLK+
Sbjct: 257 GSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLKE 316
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+FS +G I S KV+ G S+ GFV F++PEEA++AL+ +NG PL+ ++
Sbjct: 317 VFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNG-----HPLFFSV 367
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 150/289 (51%), Gaps = 18/289 (6%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA-TDLNGQSKGYGFVQFDNEESAQKAIE 170
++++ +LD + L F G I S ++ L G+S Y +V + A +A+
Sbjct: 17 ASLYVGDLDPEVTETDLRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALG 76
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN L K + + +RD K+ F N++VKNL S + L+ F +YGTI
Sbjct: 77 LLNHTNLKGKPMRI----MWCQRDPFARKTGFANLFVKNLDFSISSSCLESIFSKYGTIL 132
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V + +G+SK FGFV FE+ D A A AL+ K+ +V K KK+ER
Sbjct: 133 SCKVAGE-NGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERT----- 186
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
AA NLY+KNLD++I ++ LK +FS G ++S +M D G S+ GF
Sbjct: 187 -------AAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGF 239
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V F +P++A +A+ MNG ++ SK L+V AQRK +R L+ ++ +
Sbjct: 240 VNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLH 288
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 17/170 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV +L+ +T+ L D+F+ +G V SV + D +S +G+VNF + +A +A++
Sbjct: 195 TNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMD-HEGKSKHFGFVNFKSPDDAKKAVD 253
Query: 84 MLNFTPLNGKPIRVMYSHR----------------DPSLRKSGAGNIFIKNLDKAIDHKA 127
++N + + K + V + R + S K A N+++KNL+ ID K
Sbjct: 254 VMNGSVIGSKTLFVGKAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKK 313
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
L + FSA+G ILS KV +G SK +GFV F + E A KA+ LNG L
Sbjct: 314 LKEVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNGHPL 363
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 227/311 (72%), Gaps = 7/311 (2%)
Query: 29 GDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
GDL+++V + LY F++ + SV+VC D +T SLGYGYVNF+++ +A A+E+LN+
Sbjct: 18 GDLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNY 77
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSCKVA D
Sbjct: 78 CKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA 137
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FTNVY 206
+G SKGYGFVQF ++ S A NG L+ ++ ++V F+ + + D KS+ FTNVY
Sbjct: 138 SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWD----KSRVFTNVY 193
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
VKNL E+ T+ DL++ FGE+G ITSAVVM+DG+GKS+ FGFVNFE ++ A A+E +NG
Sbjct: 194 VKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGV 253
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
D+KE +VG+AQ+K+ R +LK +FE + + +G NLY+KNLDDS+D+ KL++L
Sbjct: 254 VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEEL 313
Query: 326 FSPFGSITSCK 336
FS FG+ITSCK
Sbjct: 314 FSEFGTITSCK 324
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 137/284 (48%), Gaps = 29/284 (10%)
Query: 118 NLDKAIDHKALHDTFSAFG-NILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGM 175
+LD +++ L+ FS F +I S KV D N G S GYG+V F++ A+ A+E LN
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
L K + + ERD S NV+VKNL ES + L F +G + S V
Sbjct: 79 KLKGKPMRIMF----SERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVA 134
Query: 236 RDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW----YVGKAQKKSERELELKHQ 291
RD G SK +GFV F + A NG ++ +V + Q R
Sbjct: 135 RDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVF----- 189
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
N+Y+KNL ++ D LK+LF FG ITS VM+D G SR GFV
Sbjct: 190 --------------TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
F E A A+ +MNG +V K L+V AQRK +R L+A+F
Sbjct: 236 NFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF 279
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 17/226 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 100 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTA 158
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
N T + + I V + R + N+++KNL + L F FG I S
Sbjct: 159 CNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 218
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
V D G+S+ +GFV F+ E+A AIEK+NG+++++K+++VG RK R TE K+
Sbjct: 219 AVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-TEDLKA 277
Query: 201 KF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
KF N+YVKNL +S L++ F E+GTITS
Sbjct: 278 KFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 323
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 18/140 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L TD+ L LF + G++ S V +D +S +G+VNF A+ A A+E
Sbjct: 190 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 248
Query: 84 MLNFTPLNGKPIRVMYSHRDPS-----------------LRKSGAGNIFIKNLDKAIDHK 126
+N ++ K + V + R + ++ N+++KNLD ++D+
Sbjct: 249 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 308
Query: 127 ALHDTFSAFGNILSCKVATD 146
L + FS FG I SCK A +
Sbjct: 309 KLEELFSEFGTITSCKYACN 328
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/383 (43%), Positives = 245/383 (63%), Gaps = 19/383 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ VT+ L +LF G +++VRVCRD+ T+RSLGYGYVNF++ AA+A+E
Sbjct: 30 SLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAMEA 89
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + K +R+M+ RDP+LR SG GNIF+KNL +D + L F FG+ILSCKV
Sbjct: 90 LNFKRVGDKCMRIMWQQRDPTLRYSGNGNIFVKNLKNEVDSRELSVIFKKFGDILSCKVM 149
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ-----VYVGHFLRKQERDTEINK 199
D G+S+GYGFV F N+ +A++AIE +NG + + +YV +F+R+ R +
Sbjct: 150 EDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEKKMGLYVANFIRRNARLATL-V 208
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+ FTNVY+K + + +E ++K F ++G ITS+ +D +G + F F NFE +DA +A
Sbjct: 209 ANFTNVYIKQVLPTVDKEVIEKFFSKFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKA 266
Query: 260 VEA-----LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+EA ++G ++ YV +AQ +SER + L+ ++ Q + G NLY++N D
Sbjct: 267 IEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNLYVRNFD 320
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+E L +LF +G I SC+VM D +G SRG GFV+F ++A+ AL EMNG+M+ K
Sbjct: 321 PEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGK 380
Query: 375 PLYVALAQRKEDRRARLQAQFAQ 397
PL V +AQR++ R L+ QF Q
Sbjct: 381 PLIVNIAQRRDQRFMMLRLQFQQ 403
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 150/295 (50%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ V +L +F + G ++S +V D +S GYG+V+F N A A
Sbjct: 115 GNGNIFVKNLKNEVDSRELSVIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEA 173
Query: 82 LEMLNFTPLNGKPIRVM------YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFS 133
+E +N + + M + R+ L A N++IK + +D + + FS
Sbjct: 174 IENMNGEKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEKFFS 233
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK-----LNGMLLNDKQVYVGHFL 188
FG I S D NG + + F F+ E A KAIE ++G++ +++YV
Sbjct: 234 KFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQ 291
Query: 189 RKQERDTEINKSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+ ER + + N+YV+N TEE+L + F EYG I S VM D +G S
Sbjct: 292 PRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNS 351
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+ FGFV+FEN+D A A+ +NG+ + K V AQ++ +R + L+ QF+Q ++
Sbjct: 352 RGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQ 406
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
Q A+LY+ +LD + + L +LF PFG+I + +V RD + S G G+V F++ + A++
Sbjct: 26 LQVASLYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAK 85
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
A+ +N K V K + + QR R
Sbjct: 86 AMEALNFKRVGDKCMRIMWQQRDPTLR 112
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 167/387 (43%), Positives = 244/387 (63%), Gaps = 27/387 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL+ VT+ L +LF G +++VRVCRD+ T+RSLGYGY+NF+N AA+A+E
Sbjct: 23 SLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAMEA 82
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + K +R+M+ RDP+LR SG GN+F+KNL +D + L F FG+ILSCKV
Sbjct: 83 LNFKRVGDKCMRIMWQQRDPALRYSGNGNVFVKNLKNEVDSRELGAIFKKFGDILSCKVM 142
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ---------VYVGHFLRKQERDT 195
D G+S+GYGFV F N+ +A++AIE +NG DK +YV +F+R+ R
Sbjct: 143 EDEEGKSRGYGFVHFKNDNAAKEAIENMNG----DKDHADEEKKMGLYVANFIRRNARLA 198
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+ + FTNVY+K + + +E ++K F +G ITS+ +D +G + F F NFE +D
Sbjct: 199 TL-VANFTNVYIKQVLPTVDKEVIEKFFSRFGGITSSATCKDKNG--RVFAFCNFEKHED 255
Query: 256 AARAVEA-----LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
A +A+EA ++G ++ YV +AQ +SER + L+ ++ Q + G NLY+
Sbjct: 256 AVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSERLIALRQKYMQC------QTLGNNLYV 309
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
+N D +E L +LF +G I SC+VM D +G SRG GFV+F ++A+ AL EMNG+M
Sbjct: 310 RNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFGNADQANAALREMNGRM 369
Query: 371 VVSKPLYVALAQRKEDRRARLQAQFAQ 397
+ KPL V +AQR++ R L+ QF Q
Sbjct: 370 LNGKPLIVNIAQRRDQRFMMLRLQFQQ 396
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 149/295 (50%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ V +L +F + G ++S +V D +S GYG+V+F N A A
Sbjct: 108 GNGNVFVKNLKNEVDSRELGAIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEA 166
Query: 82 LEMLNFTPLNGKPIRVM------YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFS 133
+E +N + + M + R+ L A N++IK + +D + + FS
Sbjct: 167 IENMNGDKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEKFFS 226
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK-----LNGMLLNDKQVYVGHFL 188
FG I S D NG + + F F+ E A KAIE ++G++ +++YV
Sbjct: 227 RFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQ 284
Query: 189 RKQERDTEINKSKF------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
+ ER + + N+YV+N TEE+L + F EYG I S VM D +G S
Sbjct: 285 PRSERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNS 344
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+ FGFV+F N+D A A+ +NG+ + K V AQ++ +R + L+ QF+Q ++
Sbjct: 345 RGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQ 399
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
Q A+LY+ +LD + + L +LF PFG+I + +V RD + S G G++ F+ + A++
Sbjct: 19 LQVASLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAK 78
Query: 362 ALLEMNGKMVVSKPLYVALAQR 383
A+ +N K V K + + QR
Sbjct: 79 AMEALNFKRVGDKCMRIMWQQR 100
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 168/379 (44%), Positives = 250/379 (65%), Gaps = 10/379 (2%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ SLYVGDL +V +++LY+ FN G V SVRVCRD+ T+ SLGYGYVNF+ ++AA+
Sbjct: 28 SASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKV 87
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
E NF L G+P+R+M+S RDP+ R+SG GNIFIKNL +D+KAL+DTF FG +LSC
Sbjct: 88 YEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVLSC 147
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINK 199
+V D G S+G FVQ+++ E A++ I ++N + DK V V + +++R + E +
Sbjct: 148 RVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDKVVKVEAYKPRRQRMLEAEETQ 207
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM-RDGDGKSKCFGFVNFENSDDAAR 258
FTNV+ KN++ ++ED+ K F +G I S V+ D G+ +GFV ++++ DA +
Sbjct: 208 KNFTNVFFKNVAADISDEDIMKEFENFGEIESKVLKSHDQFGR---YGFVAYKDTADAQK 264
Query: 259 AVEALNGKKF--DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AV LN K D + YV +AQ+KSER L+ +FE+ E K++ ANLYIKN +
Sbjct: 265 AVSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSED 324
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KP 375
+ +++L+++F +G+I S +V++D G SR GFV FS+ EEA+RA+ EMNG+M KP
Sbjct: 325 VTEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKP 384
Query: 376 LYVALAQRKEDRRARLQAQ 394
LYV+ + KE+R +Q Q
Sbjct: 385 LYVSRFRNKEERAQEVQRQ 403
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 24/207 (11%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNFSN 74
A Q T+++ ++ A+++D + F G++ S + L + G YG+V + +
Sbjct: 203 AEETQKNFTNVFFKNVAADISDEDIMKEFENFGEIES----KVLKSHDQFGRYGFVAYKD 258
Query: 75 AQEAARALEMLNFTPL--NGKPIRVMYSHRDPS----------------LRKSGAGNIFI 116
+A +A+ LN PL +G + V + R K N++I
Sbjct: 259 TADAQKAVSELNDKPLGADGTKLYVARAQRKSERMGRLRREFERRRTEMRAKYKDANLYI 318
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KN + + L F A+G I+S +V D +GQS+ +GFV F +EE A +AI+++NG +
Sbjct: 319 KNFSEDVTEDELRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRM 378
Query: 177 LND-KQVYVGHFLRKQERDTEINKSKF 202
D K +YV F K+ER E+ + +
Sbjct: 379 TADGKPLYVSRFRNKEERAQEVQRQRM 405
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/315 (49%), Positives = 210/315 (66%), Gaps = 33/315 (10%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+N G N + SLYVGDL ++T++ L++ F+ G V+S+RVCRD+ TRRSLGY YV
Sbjct: 1 MNPGAPN---YPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 57
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
NF +A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK ID+KA++D
Sbjct: 58 NFQQPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYD 117
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
TFSAFGNILSCKVA D +G SKGYGFV F+ EE+A K+I+K+NGMLLN K+VYVG F+ +
Sbjct: 118 TFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPR 177
Query: 191 QERDTE-----------------------------INKSKFTNVYVKNLSESTTEEDLQK 221
+ER+ E +N+ + N+YVKNL ++ +E L+K
Sbjct: 178 KEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRK 237
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +GTITSA VM + +G+SK FGFV F ++A +AV +NG+ K YV AQ+K
Sbjct: 238 EFTPFGTITSAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRK 296
Query: 282 SERELELKHQFEQNM 296
+R+ L Q+ Q M
Sbjct: 297 EDRKAHLASQYMQRM 311
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 186/304 (61%), Gaps = 23/304 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I L + FS+ G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ + + + +RD + KS NV++KNL ++ + + +F +G I
Sbjct: 71 TMNFDMIKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE----- 285
S V +D G SK +GFV+FE + A ++++ +NG + K+ YVGK + ERE
Sbjct: 127 SCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGE 186
Query: 286 ------------LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
ELK +FEQ E +++QG NLY+KNLDD+IDDE+L++ F+PFG+IT
Sbjct: 187 KAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNLYVKNLDDTIDDERLRKEFTPFGTIT 246
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
S KVM + G S+G GFV FS PEEA++A+ EMNG++V SKPLYVALAQRKEDR+A L +
Sbjct: 247 SAKVMME-EGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLAS 305
Query: 394 QFAQ 397
Q+ Q
Sbjct: 306 QYMQ 309
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 242/377 (64%), Gaps = 18/377 (4%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q SLYVGDL+ +++ QL ++F G +++VRVCRD+ T+RSLGYGYVN+ NA A
Sbjct: 17 QLQVASLYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSAT 76
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+A+E +NF + K IR+M+ RDP+LR SG GN+F+KNL +D + L F FG IL
Sbjct: 77 KAMEEMNFKRVGEKCIRIMWQQRDPALRYSGNGNVFVKNLKGEVDSRELSLIFKKFGEIL 136
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM--LLNDKQ--VYVGHFLRKQERDT 195
SCKV D +G S+GYGFV F ++ +A+ AIE +NG+ ++K+ +YV +F+R+ R
Sbjct: 137 SCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVANFIRRNARLA 196
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+ + FTNVY+K + + + ++K F ++G ITSA + +D +G++ F F NFE DD
Sbjct: 197 AL-VANFTNVYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHDD 253
Query: 256 AARAVEALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
A +A+E + + + ++ YV +AQ +SER + L+ ++ Q G NLY+
Sbjct: 254 AVKAIEEFHDHEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQCQS------LGNNLYV 307
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
+N D ++ L +LF +G I SC+VM D +G+SRG GFV+F ++A+ AL EM+G+M
Sbjct: 308 RNFDPEFTEKDLNELFKEYGVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGRM 367
Query: 371 VVSKPLYVALAQRKEDR 387
+ KPL V +AQR++ R
Sbjct: 368 LNGKPLVVNIAQRRDQR 384
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 191/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V+S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NGM L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN ++ TE L++ F YG ITS +V D K++ F F+N+ ++D A A+
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK +
Sbjct: 249 ENLNGKKITE 258
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 125/404 (30%), Positives = 212/404 (52%), Gaps = 28/404 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +++V +L+ + + L+D F+ G ++S +V D +S YG+V++ + + A A
Sbjct: 102 GTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESAKEA 160
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+E +N L K + V + + + + N+++KN + L FS +G I
Sbjct: 161 IEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEIT 220
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERDTEIN 198
S V +D +++ + F+ + + +SA+ A+E LNG + D ++ + +K+E + N
Sbjct: 221 SMIVKSD--NKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEESEKAAN 278
Query: 199 KSKFTNVYVKNLSESTTEEDLQK--SFGEYGTITSAVVMRD--------------GDGKS 242
++ N + +T+E +K + E T A D D K+
Sbjct: 279 ENYNNNNTTSEENATTSETPAEKKTTDSESATNKDATPGEDQTSANGTTTTVTSTTDAKT 338
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKE-----WYVGKAQKKSERELELKHQFEQNMK 297
+ N N+ A E + KK + YVG Q ++ R LK +F+
Sbjct: 339 EETPNDNTANAGINASITEKKDKKKSGESTETPNILYVGPHQSRARRHAILKAKFDTLNT 398
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
E+ +K G NLYIKNLDDS++D+ LK+LF P+G+ITS KVM+D S+G GFV F T E
Sbjct: 399 ESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHE 458
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV 401
EA++A+ EM+ K++ KPLYV LA+++E R +RLQ +F +M P+
Sbjct: 459 EANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQQRF-RMNPI 501
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ ++ D L +LF G + S +V +D +S G+G+V F +EA
Sbjct: 402 NKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEA 460
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 461 NKAVTEMHLKIINGKPLYV 479
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/250 (60%), Positives = 192/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSGAGNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +S+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKT--DNKNRKFCFINYADSESAKNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Query: 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
YVG Q ++ R LK +F+ E+ +K QG NLYIKNLDD+IDD+ LK+LF P+G+I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
TS KVMRD S+G GFV F+ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 393 AQFAQMRPVAMASTVAPRMPM-YP 415
+F +M P+ A PM YP
Sbjct: 536 QRF-RMHPIRHHMNNALNSPMQYP 558
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + LK+LFSP+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIVKTD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
++ E A A+ +NGK +
Sbjct: 238 YADSESAKNAMENLNGKKIT 257
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGAGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
+K +R
Sbjct: 178 HFIKKSER 185
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL ++ ++ L++ F YGTITSA VMRD +SK FGFV F ++A
Sbjct: 444 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEAN 503
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+AV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 504 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD AID + L + F +G I S KV D QSKG+GFV F +E A KA+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 510 HLKIINGKPLYVGLAEKREQR 530
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A ++A+ N+N N +Q +LY+ +L+ + D L +LF G + S +V RD
Sbjct: 429 AILKAKFDNLNMESKNKHQ--GVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DK 485
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97
+S G+G+V F+ +EA +A+ ++ +NGKP+ V
Sbjct: 486 EQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYV 521
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/248 (59%), Positives = 190/248 (76%), Gaps = 4/248 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V+S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NGM L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN ++ TE L++ F YG ITS +V D K++ F F+N+ ++D A A+
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 261 EALNGKKF 268
E LNGKK
Sbjct: 249 ENLNGKKI 256
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 220/418 (52%), Gaps = 29/418 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +++V +L+ + + L+D F+ G ++S +V D +S YG+V++ + + A A
Sbjct: 102 GTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESAKEA 160
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+E +N L K + V + + + + N+++KN + L + FS +G I
Sbjct: 161 IEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEIT 220
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERDTEIN 198
S V +D +++ + F+ + + +SA+ A+E LNG + D ++ + +K+E + N
Sbjct: 221 SMIVKSD--NKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDHNYDPKKEEAEKAAN 278
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
++ +N + S T + +K+ E T A G+ ++ G S A+
Sbjct: 279 ENSNNTTSEENAATSETPAE-KKTDSESATNKDATT---GEDQTSANGTTTTVTSTTDAK 334
Query: 259 AVEALN--------GKKFDDKE----------WYVGKAQKKSERELELKHQFEQNMKEAA 300
EA N +K D K+ YVG Q ++ R LK +F+ E+
Sbjct: 335 TEEATNDSTANAATAEKKDSKKSGESTETPNILYVGPHQSRARRHALLKAKFDTLNTESR 394
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+K G NLYIKNLDDS+DD+ LK+LF P+G+ITS KVM+D S+G GFV F T EEA+
Sbjct: 395 NKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEAN 454
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
+A+ EM+ K++ KPLYV LA+++E R +RLQ +F +M P+ + PM P +
Sbjct: 455 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHHMNNSLNSPMQYPNS 511
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L + + L++ F+ G++LS +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL ++ + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN D++ + LK+LFSP+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIVKSD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
+S + A A+ +NGK +
Sbjct: 238 YSDADSARNAMENLNGKKIT 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ ++ D L +LF G + S +V +D +S G+G+V F +EA
Sbjct: 395 NKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEA 453
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 454 NKAVTEMHLKIINGKPLYV 472
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/266 (57%), Positives = 197/266 (74%), Gaps = 5/266 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V+S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NGM L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN ++ TE L++ F YG ITS +V D K++ F F+N+ ++D A A+
Sbjct: 191 KFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV--KSDNKNRKFCFINYSDADSARNAM 248
Query: 261 EALNGKKF-DDKEWYVGKAQKKSERE 285
E LNGKK +D + KK E E
Sbjct: 249 ENLNGKKITEDGKIDYNYDPKKEETE 274
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/422 (30%), Positives = 217/422 (51%), Gaps = 32/422 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +++V +L+ + + L+D F+ G ++S +V D +S YG+V++ + + A A
Sbjct: 102 GTGNIFVKNLDKTIDNKALFDTFSMFGNILSCKVATD-EFGKSKNYGFVHYEDEESAKEA 160
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+E +N L K + V + + + + N+++KN + L FS +G I
Sbjct: 161 IEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEIT 220
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLRKQERDTEIN 198
S V +D +++ + F+ + + +SA+ A+E LNG + D ++ + +K+E + N
Sbjct: 221 SMIVKSD--NKNRKFCFINYSDADSARNAMENLNGKKITEDGKIDYNYDPKKEETEKPAN 278
Query: 199 KSKFTNVYVKNL--------------SESTTEEDL-----QKSFGEYGTITSAVVMRDGD 239
++ N + SE T +D Q S T ++ + D
Sbjct: 279 ENSNNNTTTEENTTTSETPAEKKTPDSEPATNKDATPGEDQTSANGTTTTVTSTTDANPD 338
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-----WYVGKAQKKSERELELKHQFEQ 294
K++ N N+ A E + KK + YVG Q ++ R LK +F+
Sbjct: 339 SKTEETPNDNTANAGTNASTTEKKDNKKSGENTETPNILYVGPHQSRARRHAILKAKFDT 398
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
E+ +K G NLYIKNLDDS++D+ LK+LF P+G+ITS KVM+D S+G GFV F
Sbjct: 399 LNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFG 458
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM- 413
T EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ +F +M P+ A P+
Sbjct: 459 THEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHHINNALNAPIQ 517
Query: 414 YP 415
YP
Sbjct: 518 YP 519
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ ++ D L +LF G + S +V +D +S G+G+V F +EA
Sbjct: 405 NKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEA 463
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 464 NKAVTEMHLKIINGKPLYV 482
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/250 (59%), Positives = 192/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSGAGNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVGHF++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F +G ITS +V D K++ F F+N+ +S+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKT--DNKNRKFCFINYADSESAKNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Query: 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
YVG Q ++ R LK +F+ E+ +K QG NLYIKNLDD+IDD+ LK+LF P+G+I
Sbjct: 416 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 475
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
TS KVMRD S+G GFV F+ EEA+RA+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 476 TSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 535
Query: 393 AQFAQMRPVAMASTVAPRMPM-YP 415
+F +M P+ A PM YP
Sbjct: 536 QRF-RMHPIRHHMNNALNSPMQYP 558
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 141/277 (50%), Gaps = 25/277 (9%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + LKQLFSPFG ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIVKTD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVVS----KPLYVALAQRKE 385
++ E A A+ +NGK + P Y A + E
Sbjct: 238 YADSESAKNAMENLNGKKITDDGQIDPTYDAKKEEAE 274
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGAGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
+K +R
Sbjct: 178 HFIKKSER 185
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL ++ ++ L++ F YGTITSA VMRD +SK FGFV F ++A
Sbjct: 444 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEAN 503
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
RAV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 504 RAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD AID + L + F +G I S KV D QSKG+GFV F +E A +A+ ++
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 510 HLKIINGKPLYVGLAEKREQR 530
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ + D L +LF G + S +V RD +S G+G+V F+ +EA
Sbjct: 444 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFALQEEA 502
Query: 79 ARALEMLNFTPLNGKPIRV 97
RA+ ++ +NGKP+ V
Sbjct: 503 NRAVTEMHLKIINGKPLYV 521
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 149/250 (59%), Positives = 192/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSGAGNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVGHF+++ ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +S+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKT--DNKNRKFCFINYADSESAKNAM 248
Query: 261 EALNGKKFDD 270
E LNGKK D
Sbjct: 249 ENLNGKKITD 258
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Query: 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
YVG Q ++ R LK +F+ E+ +K QG NLYIKNLDD+IDD+ LK+LF P+G+I
Sbjct: 407 LYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTI 466
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
TS KVMRD S+G GFV F+ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 467 TSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 526
Query: 393 AQFAQMRPVAMASTVAPRMPM-YP 415
+F +M P+ A PM YP
Sbjct: 527 QRF-RMHPIRHHMNNALNSPMQYP 549
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG K+SER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + LKQLFSP+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIVKTDNK--NRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
++ E A A+ +NGK +
Sbjct: 238 YADSESAKNAMENLNGKKIT 257
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGAGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
++ +R
Sbjct: 178 HFIKRSER 185
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD AID + L + F +G I S KV D QSKG+GFV F +E A KA+ ++
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 501 HLKIINGKPLYVGLAEKREQR 521
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N+ +LY+ +L+ + D L +LF G + S +V RD +S G+G+V F+ +EA
Sbjct: 435 NKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRD-DKEQSKGFGFVCFAQQEEA 493
Query: 79 ARALEMLNFTPLNGKPIRV 97
+A+ ++ +NGKP+ V
Sbjct: 494 NKAVTEMHLKIINGKPLYV 512
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 195/256 (76%), Gaps = 3/256 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
+ + + SLYVGDL +VT++ LY+ F+Q G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SGSTNYPMASLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQP 63
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +N+ P+ G+PIR+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAF
Sbjct: 64 ADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAF 123
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV+ + NG SKGYGFV F+ EE+ +AIEK+NGMLLNDK+V+VG FL + ER
Sbjct: 124 GNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIK 182
Query: 196 EINK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ + +FTNVY+KN + E+ LQ F +YG + S VMRD DG S+ FGFV +++
Sbjct: 183 KMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSH 242
Query: 254 DDAARAVEALNGKKFD 269
++A AVEA+NG++ +
Sbjct: 243 EEAQAAVEAMNGQEIE 258
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 16/260 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D + +S GY +V F A++A++
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + + + + +RD + KS N+++KNL +S + L +F +G I S
Sbjct: 73 MNYDPIKGRPIRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V + +G SK +GFV+FE + RA+E +NG +DK+ +VGK +SER
Sbjct: 129 CKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERI------ 181
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ M E +F N+YIKN D D++ L+ +F +G + S VMRD G SRG GFV
Sbjct: 182 --KKMGERVRQF--TNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFV 237
Query: 352 AFSTPEEASRALLEMNGKMV 371
A+ + EEA A+ MNG+ +
Sbjct: 238 AYDSHEEAQAAVEAMNGQEI 257
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 18/201 (8%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F + G + S V RD +S + +VNF+ DA RA++
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 72
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + S+R+ L+ K N++IKNLD SID++ L
Sbjct: 73 MNYDPIKGRPIRI----MWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKAL 116
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV + +G S+G GFV F T E RA+ ++NG ++ K ++V
Sbjct: 117 YDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFL 175
Query: 383 RKEDRRARLQAQFAQMRPVAM 403
+ +R ++ + Q V +
Sbjct: 176 TRSERIKKMGERVRQFTNVYI 196
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/290 (52%), Positives = 207/290 (71%), Gaps = 15/290 (5%)
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-- 197
+CKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 59
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA
Sbjct: 60 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD I
Sbjct: 120 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGI 179
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLY
Sbjct: 180 DDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 238
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMASTVA-------PRMPMYPPGAWI 420
VALAQRKE+R+A L Q+ Q MAS A P P P G ++
Sbjct: 239 VALAQRKEERQAHLTNQYMQR----MASVRAVPNPVINPYQPAPPSGYFM 284
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/264 (41%), Positives = 155/264 (58%), Gaps = 23/264 (8%)
Query: 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSG 110
+ +V RD + S GYG+V+F + A RA+E +N LN + + V + R + G
Sbjct: 1 ACKVVRDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 58
Query: 111 A-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
A N++IKN + +D + L D F FG LS KV TD +G+SKG+GFV F+ E A
Sbjct: 59 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 118
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSE 212
QKA++++NG LN KQ+YVG +K ER TE+ K KF N+YVKNL +
Sbjct: 119 QKAVDEMNGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDD 177
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+E L+K F +GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K
Sbjct: 178 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 236
Query: 273 WYVGKAQKKSERELELKHQFEQNM 296
YV AQ+K ER+ L +Q+ Q M
Sbjct: 237 LYVALAQRKEERQAHLTNQYMQRM 260
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 27/214 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F
Sbjct: 58 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 114
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
++A +A++ +N LNGK I V + + D R G N+++K
Sbjct: 115 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 173
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++
Sbjct: 174 NLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 232
Query: 178 NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
K +YV RK+ER ++ TN Y++ ++
Sbjct: 233 ATKPLYVALAQRKEER-----QAHLTNQYMQRMA 261
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/261 (54%), Positives = 191/261 (73%), Gaps = 2/261 (0%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A N + SLYVG+LE +VT++ L++LF+ +G V S+RVCRD TRRSLGY YVN++N
Sbjct: 45 APHNSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNT 104
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+ RALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 105 ADGERALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAF 164
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D S+GYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K++R +
Sbjct: 165 GNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQS 224
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ + K+ FTNVYVKN+ T+E+ + F YG ITSA + RD DG S+ FGFVNF+
Sbjct: 225 KFDEMKANFTNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEH 284
Query: 254 DDAARAVEALNGKKFDDKEWY 274
AA+AVE L+ + + Y
Sbjct: 285 QHAAKAVEELHESELKGQTLY 305
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 163/319 (51%), Gaps = 23/319 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ L+ ++ L + FS GN+ S +V D + +S GY +V ++N ++A+
Sbjct: 52 SASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADGERAL 111
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 112 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNI 167
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D S+ +GFV++E ++ A A++ +NG ++K+ +VG K +R+
Sbjct: 168 LSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFD 227
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+D + DE+ + +F +G ITS + RD G+SR
Sbjct: 228 EMKANF-------------TNVYVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSR 274
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLY-VALAQRKEDRRARLQAQFAQMRPVAMAS 405
G GFV F + A++A+ E++ + + LY + L + R + ++ + R S
Sbjct: 275 GFGFVNFQEHQHAAKAVEELHESELKGQTLYPLELRKLASTRVSICTSRISMTRSTTSVS 334
Query: 406 TVA-PRMPMYPPGAWIWLS 423
+ PRM + P +S
Sbjct: 335 ARSLPRMELSLPPRLCVMS 353
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 21/203 (10%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDA 256
N ++YV L S TE L + F G + S V RD +S + +VN+ N+ D
Sbjct: 48 NSHTSASLYVGELEPSVTEAMLFELFSTIGNVASIRVCRDAVTRRSLGYSYVNYNNTADG 107
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
RA+E LN + + +Q+ A K N++IKNLD +
Sbjct: 108 ERALEELNYTLIKGRPCRIMWSQRDP----------------ALRKTGQGNVFIKNLDTA 151
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
ID++ L F+ FG+I SCKV +D SRG GFV + T E A+ A+ +NG ++ K +
Sbjct: 152 IDNKALHDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKV 211
Query: 377 YVALAQRKEDRRARLQAQFAQMR 399
+V K+DR Q++F +M+
Sbjct: 212 FVGHHIPKKDR----QSKFDEMK 230
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 193/256 (75%), Gaps = 3/256 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +VT++ LY+ F+ G ++S+RV RD+ TRRSLGY VNF +A RAL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKP+R+M+S RDPSLR+SG GN+FIKNL+K ID+KAL+DTFSAFGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KF 202
+D NG SKG+GFV F+ EE+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVY+KN + +E L FG +G I S VM D GKSK FGFV+FE +DA +AV+
Sbjct: 191 TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 263 LNGKKFDDKEWYVGKA 278
+NGK+ + K YVG+A
Sbjct: 251 MNGKELNGKHIYVGRA 266
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 152/270 (56%), Gaps = 16/270 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS+ G ILS +V D + +S GY V F+ A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K V + +RD + +S NV++KNL+++ + L +F +G I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 128 CKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG-- 184
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
KE N+YIKN D +DDE L LF FG I S KVM D G S+G GFV
Sbjct: 185 --TGTKEFT------NVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+F E+A +A+ EMNGK + K +YV A
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 22/191 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + VNFE DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD GK + S+R+ L+ N++IKNL+ +ID++
Sbjct: 72 MN---FD---VIKGKPVRIMWSQRDPSLRRS------------GVGNVFIKNLNKTIDNK 113
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGR 172
Query: 381 AQRKEDRRARL 391
+ +++R A L
Sbjct: 173 FKSQKEREAEL 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G +F T++Y+ + + D L LF + GQ++SV+V D +S G+G+V+F
Sbjct: 184 GTGTKEF--TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFER 240
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N LNGK I V
Sbjct: 241 HEDAQKAVDEMNGKELNGKHIYV 263
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/250 (58%), Positives = 190/250 (76%), Gaps = 4/250 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F T SLYVGDL +VT++ LY++FN +G V S+RVCRD TR+SLGY YVN+ N +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ LN+T + G+P R+M+SHRDPSLRKSG GNIF+KNLDK+ID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVATD G+SK YGFV +++EESA++AIEK+NG+ L K VYVG F++K ER T N +
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT--NDT 190
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTN+YVKN +S TE L++ F YG ITS +V D K++ F F+N+ +++ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKM--DNKNRKFCFINYADAESAKNAM 248
Query: 261 EALNGKKFDD 270
+ LNGKK D
Sbjct: 249 DNLNGKKITD 258
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
YVG Q ++ R LK +F+ E +K QG NLYIKNLDD IDD L++LF PFG+I
Sbjct: 417 LYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTI 476
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
TS KVMRD S+G GFV F++ EEA++A+ EM+ K++ KPLYV LA+++E R +RLQ
Sbjct: 477 TSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 536
Query: 393 AQFAQMRPVAMASTVAPRMPMY---PPGAWIWLSAAACSW 429
+F +M P+ PM P + S S+
Sbjct: 537 QRF-RMHPIRHHMNNPLNTPMQYASPQSPQLQFSQNTLSY 575
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L++ + L++ F+ G++ S +V D + +S GY +V + N A++A++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N + + L RD + KS N++VKNL +S + L +F +G I S
Sbjct: 78 NYTNIKGQPAR----LMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V D GKSK +GFV++E+ + A A+E +NG + K YVG KKSER
Sbjct: 134 KVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSER-------- 185
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
A + + NLY+KN DS+ + L+QLF+P+G ITS V D +R F+
Sbjct: 186 ------ATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMD--NKNRKFCFIN 237
Query: 353 FSTPEEASRALLEMNGKMVV 372
++ E A A+ +NGK +
Sbjct: 238 YADAESAKNAMDNLNGKKIT 257
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+E TE L + F G ++S V RD KS + +VN+ N DA RA++ L
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 264 NGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
N + W S R+ L+ K N+++KNLD SID+
Sbjct: 78 NYTNIKGQPARLMW--------SHRDPSLR------------KSGTGNIFVKNLDKSIDN 117
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L FS FG+I SCKV D G S+ GFV + E A A+ ++NG + SK +YV
Sbjct: 118 KALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVG 177
Query: 380 LAQRKEDR 387
+K +R
Sbjct: 178 PFIKKSER 185
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
NK + N+Y+KNL + + L++ F +GTITSA VMRD +SK FGFV F + ++A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEAN 504
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+AV ++ K + K YVG A+K+ +R L+ +F
Sbjct: 505 KAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID L + F FG I S KV D QSKG+GFV F ++E A KA+ ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
+ ++N K +YVG ++++R
Sbjct: 511 HLKIINGKPLYVGLAEKREQR 531
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N N+ +LY+ +L+ + D L +LF G + S +V RD +S G+G+V F++ +
Sbjct: 443 NKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQE 501
Query: 77 EAARALEMLNFTPLNGKPIRV 97
EA +A+ ++ +NGKP+ V
Sbjct: 502 EANKAVTEMHLKIINGKPLYV 522
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 244/404 (60%), Gaps = 26/404 (6%)
Query: 24 TSLYVGDLEANVT--DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G+ IRVM+S RDP RKSG N+F+K LD AI+ K L FS G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFSKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ + + A+E +NG L D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGTKAALE-MNGSKLGDSEVVVAPFVRRVDREAMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN++ S TE D++ E+G + S + +K F V FE A +A+
Sbjct: 187 -FRNIYIKNITASATEADVKAIVEEFGKVDSLFLSEHARFPTK-FALVAFEEHQAAVQAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLYIK+L
Sbjct: 245 AALNESEESGLTEKAVKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYIKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D++L+++F PFG ITSC +M++P+G +G FV F + AS AL +NG +
Sbjct: 297 PDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRSLNGHPLEH 356
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
+KPLYV+ A++K+ R LQ + A MR S +AP M +P
Sbjct: 357 SAKPLYVSHAEQKDMRIRLLQQRRAAMR---HQSRMAPLMNTFP 397
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 248/404 (61%), Gaps = 26/404 (6%)
Query: 24 TSLYVGDLEANVT--DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS++VGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LNFT + G+ IRVM++ RDP RKSGA NIF+K LD A+ KAL FS G +LS
Sbjct: 68 IDALNFTGIAPGRYIRVMFAIRDPLQRKSGANNIFVKKLDAAVSAKALQAAFSRCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ + A+ A++ +NG + D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSEGHSKGYGFVQFETADGAKAALD-MNGAKVGDSEVEVAPFVRRVDREAMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN+ + TE D++ + ++G +TS + +K F FE + A +A+
Sbjct: 187 -FRNIYIKNIKATATEVDMRTTLEKFGKVTSLFLAEHAPFLTK-FALAVFEEHEAAVKAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
LN G + + V +A KSER+ E K+ A +Q G NLY+K+L
Sbjct: 245 AELNESEESGLTEEAVKLVVCRALSKSERDRE--------RKKTASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
D I D+KL+++F+PFG ITSC +MR+ +G RG FV F + A+ A+ E+NG+ + S
Sbjct: 297 PDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRELNGRSLES 356
Query: 374 --KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
KPLYV+ A++K+ R LQ + A MR + +AP M +P
Sbjct: 357 SKKPLYVSQAEQKDMRIRLLQQRRAAMR---HQTRMAPPMNTFP 397
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 246/404 (60%), Gaps = 26/404 (6%)
Query: 24 TSLYVGDLEANVT--DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G+ IRVM+S RDP RKSG N+F+K LD AI+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGRQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ E A+ A++ +NG L D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN++ + TE D++ + ++G + S + +K F V FE + A +A+
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLY+K+L
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D++L+++F PFG ITSC +M++P+G +G FV F + AS AL +NG+ +
Sbjct: 297 PDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEH 356
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
KPLYV+ A++K+ R LQ + A MR S + P M +P
Sbjct: 357 SKKPLYVSHAEQKDMRIRLLQQRRAAMR---HQSRMVPPMNTFP 397
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/319 (48%), Positives = 215/319 (67%), Gaps = 18/319 (5%)
Query: 141 CKVAT--DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
C+VA D NG S+G+GFV F+ +E+A +AI +NGMLLND++V+VGHF +QER+ E+
Sbjct: 111 CRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELG 169
Query: 199 KS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+FTN+YVKN E ++ L++ F E+G S VM D +G S+ FGFVNFE ++A
Sbjct: 170 ARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEA 229
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+AV ++NGK + YVG+AQK++ER+ ELK +FEQ +E +++QG NLY+KNLDD
Sbjct: 230 QKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDV 289
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
IDDEKL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPL
Sbjct: 290 IDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 348
Query: 377 YVALAQRKEDRRARLQAQFAQ----MR----PVAMAST--VAPRMPMYPPGAWIWLSAAA 426
YVALAQRKE+R+A L Q+ Q +R PV T P +P P A + +
Sbjct: 349 YVALAQRKEERKAILTNQYMQRISVLRNINGPVFPQPTNYFLPAIPQSPTRASFYSPSTM 408
Query: 427 CSWYEA-RWGSHA-KFLCA 443
A RW S++ + LCA
Sbjct: 409 APIRPAPRWTSYSPRSLCA 427
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 145/260 (55%), Gaps = 22/260 (8%)
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY----SHRDPSL--RK 108
VC + +R G+G+V+F + A +A+ +N LN + + V + R+ L R
Sbjct: 116 VCDENGSR---GFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELGARA 172
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
NI++KN ++ +D + L + FS FG LS KV D NG S+G+GFV F+ E AQKA
Sbjct: 173 LEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKA 232
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTTE 216
+ +NG L + +YVG ++ ER E +N+ + N+YVKNL + +
Sbjct: 233 VNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLYVKNLDDVIDD 292
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
E L+K F YG ITSA VM +G G SK FGFV F + ++A +AV +NG+ K YV
Sbjct: 293 EKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 351
Query: 277 KAQKKSERELELKHQFEQNM 296
AQ+K ER+ L +Q+ Q +
Sbjct: 352 LAQRKEERKAILTNQYMQRI 371
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 11/172 (6%)
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
T+ V+ D +G S+ FGFV+FE + A +A+ +NG +D++ +VG + + ERE E
Sbjct: 109 TLCRVAVVCDENG-SRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAE 167
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
L A + N+Y+KN ++ +DD+ L++LFS FG S KVM D +G SRG
Sbjct: 168 L----------GARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRG 217
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F EEA +A+ MNGK + + LYV AQ++ +R+ L+ +F QM+
Sbjct: 218 FGFVNFEKHEEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQMK 269
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 31/216 (14%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++YV + E +V D L +LF++ G+ +SV+V D S G+G+VNF
Sbjct: 169 GARALEF--TNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVD-ENGHSRGFGFVNFEK 225
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-------SHRDPSLRKS------------GAGNIF 115
+EA +A+ +N L G RV+Y + R L++ N++
Sbjct: 226 HEEAQKAVNSMNGKALGG---RVLYVGRAQKRTERQGELKRRFEQMKQERVNRYQGVNLY 282
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+KNLD ID + L FS +G I S KV T+ G SKG+GFV F + E A KA+ ++NG
Sbjct: 283 VKNLDDVIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGR 341
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
+++ K +YV RK+ER K+ TN Y++ +S
Sbjct: 342 IVSTKPLYVALAQRKEER-----KAILTNQYMQRIS 372
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 168/404 (41%), Positives = 245/404 (60%), Gaps = 26/404 (6%)
Query: 24 TSLYVGDLEANVT--DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKV 67
Query: 82 LEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G IRVM+S RDP RKSG N+F+K LD AI+ K L F+ G +LS
Sbjct: 68 IDALNYTGIAPGLQIRVMFSIRDPLQRKSGMNNVFVKKLDTAINAKELQAAFTKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ E A+ A++ +NG L D +V V F+R+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNGSKLGDSEVVVAPFVRRVDREVMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KN++ + TE D++ + ++G + S + +K F V FE + A +A+
Sbjct: 187 -FRNIYIKNIAAAATEADVKAAAEKFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVQAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLY+K+L
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D+KL+++F PFG ITSC +M++P+G +G FV F + AS AL +NG+ +
Sbjct: 297 PDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEH 356
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
KPLYV+ A++K+ R LQ + A MR S + P M +P
Sbjct: 357 SKKPLYVSHAEQKDMRIRLLQQRRAAMR---HQSRMVPPMNTFP 397
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/231 (58%), Positives = 177/231 (76%), Gaps = 3/231 (1%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159
S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F
Sbjct: 61 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHF 119
Query: 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEE 217
+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E +E
Sbjct: 120 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 179
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268
L+ FG++G S VM D GKSK FGFV+FE +DA +AV+ +NGK+
Sbjct: 180 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 142/243 (58%), Gaps = 16/243 (6%)
Query: 128 LHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
L++ FS G ILS +V D+ +S GY +V F A++A++ +N ++ K V +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +G
Sbjct: 61 ----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYG 115
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
FV+FE + A RA+E +NG +D++ +VG+ + + ERE EL + A +F
Sbjct: 116 FVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--T 165
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F E+A +A+ EM
Sbjct: 166 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 225
Query: 367 NGK 369
NGK
Sbjct: 226 NGK 228
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 22/179 (12%)
Query: 219 LQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L + F G I S V RD +S + +VNF+ DA RA++ +N FD GK
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN---FD---VIKGK 54
Query: 278 AQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
+ S+R+ L+ K N++IKNLD SID++ L FS FG+I SC
Sbjct: 55 PVRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 102
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQ 394
KV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V + +++R A L A+
Sbjct: 103 KVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 160
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 158 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 214
Query: 75 AQEAARALEMLN 86
++A +A++ +N
Sbjct: 215 HEDAQKAVDEMN 226
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/368 (42%), Positives = 236/368 (64%), Gaps = 22/368 (5%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL ++V + L +LF+++G+ + S+ VCRD +T RSLGY YVNF N +A RA
Sbjct: 120 TSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERA 179
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN++ ++GKP R+M+S+RDP+ RK+ GN+F+KNL+KA+D+ L+D FS+FGNILSC
Sbjct: 180 LDTLNYSMIHGKPCRIMWSYRDPTKRKTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSC 239
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV + G SKGYG+V F+ ES+ KAIE++NG L+ K ++ F+ K ER NK
Sbjct: 240 KVEYE-KGISKGYGYVHFETSESSGKAIERINGTLVLGKPIFCEPFVAKVERYKVENK-- 296
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR--A 259
V+ +N ES T+E +Q+ ++G I + D GKSK G V F+N +DA + A
Sbjct: 297 ---VFFRNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSKGLGTVEFKNCEDAQKLLA 353
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEA + + + K + + K ER EL+ K+ D+ L++ N+D+SI+
Sbjct: 354 VEA-DSIQINGKPITFDRVKNKIERVTELR-------KKTTDQ----TLFLSNIDESIEK 401
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E +K+ FS G+I CK+++D SG ++G GF+ FS EA++AL +NG +K + V+
Sbjct: 402 ETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGNKQITVS 461
Query: 380 LAQRKEDR 387
L+ KE +
Sbjct: 462 LSSNKEQQ 469
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM- 84
++ + + +VT + + ++ G++ + D ST +S G G V F N ++A + L +
Sbjct: 297 VFFRNADESVTQEMIQEELSKFGEIEICTLKID-STGKSKGLGTVEFKNCEDAQKLLAVE 355
Query: 85 LNFTPLNGKPI---RVMYS-HRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ +NGKPI RV R LRK +F+ N+D++I+ + + + FS G I+
Sbjct: 356 ADSIQINGKPITFDRVKNKIERVTELRKKTTDQTLFLSNIDESIEKETIKEEFSKHGAII 415
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
CK+ D +G++KGYGF+ F A KA+E LNG +KQ+ V K+++ T
Sbjct: 416 GCKIVQDESGKNKGYGFITFSEVSEANKALEALNGFTFGNKQITVSLSSNKEQQLT 471
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDPSGI-SRG 347
QF N + + Q +LY+ +L +++ L +LFS G +I S V RD + S G
Sbjct: 109 QFPPNYQPS----QLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLG 164
Query: 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+V F +A RAL +N M+ KP + + R +R
Sbjct: 165 YAYVNFYNNHDAERALDTLNYSMIHGKPCRIMWSYRDPTKR 205
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 243/404 (60%), Gaps = 26/404 (6%)
Query: 24 TSLYVGDLEANVT--DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TS+YVGDL ++ + + +LF+ + VVSV+VCRD++T+RSLGYGYVNF +A +
Sbjct: 8 TSVYVGDLPIDLPRPEEAINNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTPADAEKV 67
Query: 82 LEMLNFTPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
++ LN+T + G+ IRVM+S RDP RKSG N+F+K LD A++ K L F+ G +LS
Sbjct: 68 IDALNYTGITPGRQIRVMFSIRDPIQRKSGMNNVFVKKLDTAVNAKELQAAFTKCGRVLS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
CKVA D G SKGYGFVQF+ + A+ A+E ++G L D +V V FLR+ +R+ KS
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGAKAALE-MDGSKLGDCEVVVAPFLRRVDREVMAAKS 186
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
F N+Y+KNL + E D++ + +G + S + +K F V FE + A +A+
Sbjct: 187 -FRNIYIKNLKATVAEADVKTTVETFGKVNSLFLSEHAPFPTK-FALVAFEEHEAAVKAI 244
Query: 261 EALN-----GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ--GANLYIKNL 313
ALN G + V +A KSER+ E K+AA +Q G NLY+K+L
Sbjct: 245 AALNESEESGLTEKAAKLVVCRALSKSERDRE--------KKKAASLYQNHGRNLYVKHL 296
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371
D I D++L+++F+PFG ITSC +M++P+G +G FV F + AS AL +NG +
Sbjct: 297 PDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGHSLDN 356
Query: 372 VSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYP 415
K LYV+ A++K+ R LQ + A MR S +AP M +P
Sbjct: 357 SKKLLYVSQAEQKDMRIRLLQQRRAAMR---HQSRMAPPMNTFP 397
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/256 (52%), Positives = 190/256 (74%), Gaps = 1/256 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V ++ L+D F++ G V+S+ VCRDL T+RSLGY Y+ F +A RA +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N+ P+ G+P +M+S RDPSLR+S AG+IFIKNL+++IDHKAL+DTFSAFGNILSCKVA
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILSCKVA 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
TDLNGQSKG GFV FD +E+A AIEK+NG LLN+++V+VG F+ +++R +TN
Sbjct: 132 TDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQHYTN 191
Query: 205 -VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
V+VKN E T+E L F ++G+I +AVVM+D +G SK FGFV+FE+ + A+ AV+A+
Sbjct: 192 VVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAV 251
Query: 264 NGKKFDDKEWYVGKAQ 279
+ + ++ Y +A
Sbjct: 252 HSSIVNGRQVYCSRAH 267
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 140/271 (51%), Gaps = 16/271 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L ++ L D FS G +LS V DL +S GY ++ F A++A +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + + Y+ +RD + +S+ ++++KNL S + L +F +G I S
Sbjct: 72 MNYEPIKGQPCYI----MWSQRDPSLRRSRAGHIFIKNLERSIDHKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D +G+SK GFV+F+ + A A+E +NG+ ++++ +VGK + +R +Q
Sbjct: 128 CKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFIPRKDRSHTGFNQ 187
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
N+ +++KN + DE L F FGSI + VM+D G+S+ GFV
Sbjct: 188 HYTNV-----------VFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+F + E AS A+ ++ +V + +Y + A
Sbjct: 237 SFESHEAASAAVQAVHSSIVNGRQVYCSRAH 267
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEA 262
++YV +L E DL F + G + S V RD K S + ++ F+ DA RA +
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + Y+ S+R+ L+ + + +++IKNL+ SID + L
Sbjct: 72 MNYEPIKGQPCYI----MWSQRDPSLR------------RSRAGHIFIKNLERSIDHKAL 115
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV D +G S+G GFV F E A A+ ++NG+++ ++ ++V
Sbjct: 116 YDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNGQLLNNRKVHVGKFI 175
Query: 383 RKEDR 387
++DR
Sbjct: 176 PRKDR 180
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
NQ T ++V + + TD LY+ F + G + + V +D + S +G+V+F + + A
Sbjct: 186 NQHYTNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKD-NEGVSKDFGFVSFESHEAA 244
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPS 105
+ A++ ++ + +NG+ + +H PS
Sbjct: 245 SAAVQAVHSSIVNGRQVYCSRAHSMPS 271
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLE 365
+LY+ +L +++ L FS G + S V RD + S G ++ F P +A RA
Sbjct: 12 SLYVGDLLPDVNEADLFDHFSKAGPVLSICVCRDLITKRSLGYAYIYFQQPADAERAFDT 71
Query: 366 MNGKMVVSKPLYVALAQRKED-RRAR 390
MN + + +P Y+ +QR RR+R
Sbjct: 72 MNYEPIKGQPCYIMWSQRDPSLRRSR 97
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 198/281 (70%), Gaps = 7/281 (2%)
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS-- 200
VA D SKGYGFV F+ EESAQKAIEK+NGMLL K+VYVG F + R E+ ++
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN ++ +E L+K F ++G ITSA VM D DGKSK FGFV FEN +DA +AV
Sbjct: 61 RFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAV 120
Query: 261 EALNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
++ + +++ YV +AQKK+ER ELK ++EQ E ++QG NLY+KNLDD+++
Sbjct: 121 TEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVN 180
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D+ LKQ F +G ITS KVM D +G S+G GFV F P+EA++A+ EMNGKM+ +KPLYV
Sbjct: 181 DDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 240
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPPG 417
ALAQRKEDR+A+L +Q+ Q R ++ A MP +Y PG
Sbjct: 241 ALAQRKEDRKAQLASQYMQ-RLASIRMHNAGSMPGTVYTPG 280
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 145/253 (57%), Gaps = 20/253 (7%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIK 117
S GYG+V+F + A +A+E +N L GK + V + R LR+ G N++IK
Sbjct: 9 SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIK 68
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
N +D +AL FS FG I S V D +G+SKG+GFV F+N E A+KA+ +++ L
Sbjct: 69 NFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYEL 128
Query: 178 --NDKQVYVGHFLRKQERDTEINKS------------KFTNVYVKNLSESTTEEDLQKSF 223
++++YV +K ER E+ + + N+YVKNL ++ ++ L+++F
Sbjct: 129 PGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDILKQNF 188
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
YG ITSA VM D +G+SK FGFV FE D+A +AV +NGK K YV AQ+K +
Sbjct: 189 EAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKED 248
Query: 284 RELELKHQFEQNM 296
R+ +L Q+ Q +
Sbjct: 249 RKAQLASQYMQRL 261
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 28/216 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G A +F T++Y+ + + L LF++ G++ S V D + +S G+G+V F N
Sbjct: 56 GETARRF--TNVYIKNFADELDKEALEKLFSKFGKITSAAVMVD-ADGKSKGFGFVAFEN 112
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-------SHRDPSLRKS------------GAGNIF 115
++A +A+ ++ L G R +Y + R L++ N++
Sbjct: 113 PEDAEKAVTEMHEYELPGTE-RKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLY 171
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+KNLD ++ L F A+G I S KV D NG+SKG+GFV F+ + A KA+ ++NG
Sbjct: 172 VKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGK 231
Query: 176 LLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
++ K +YV RK++R K++ + Y++ L+
Sbjct: 232 MMCTKPLYVALAQRKEDR-----KAQLASQYMQRLA 262
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 147/345 (42%), Positives = 201/345 (58%), Gaps = 65/345 (18%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+++RRSLGY Y
Sbjct: 2 NATGAG-----YPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GNIFIKNLD +ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV------- 182
DTFS FGNILSCKV D +G S+G+GFV F+ E+A +AI +NGMLLND++V
Sbjct: 117 DTFSTFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCP 175
Query: 183 ---------------------------------------YVGHFLRKQERDTE------- 196
YVG ++ ER +E
Sbjct: 176 AGRVGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQ 235
Query: 197 -----INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+N+ + N+YVKNL + +E L+K F YGTITSA VM + G SK FGFV F
Sbjct: 236 IKQERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFS 294
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+ ++A +AV +NG+ K YV AQ+K ER+ L +Q+ +
Sbjct: 295 SPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMHRL 339
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 205/354 (57%), Gaps = 58/354 (16%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
+GAG ++++ +L + L++ FS G+I+S +V D+ + +S GY ++ F
Sbjct: 4 TGAGYPLASLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSLGYAYINFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS N+++KNL +S + L +F
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTF 119
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA--------------------------- 256
+G I S V+ D G S+ FGFV+FE + A
Sbjct: 120 STFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCCPAGR 178
Query: 257 -------------------ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
A+AV ++NGK+ + + YVG+AQK++ER+ ELK +FEQ +
Sbjct: 179 VGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQKRTERQSELKRKFEQIKQ 238
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357
E +++QG NLY+KNLDD IDDEKL++ FSP+G+ITS KVM + SG S+G GFV FS+PE
Sbjct: 239 ERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVMTE-SGHSKGFGFVCFSSPE 297
Query: 358 EASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM 411
EA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ R + + VAP M
Sbjct: 298 EATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMH-RLSTIRTLVAPIM 350
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 202/279 (72%), Gaps = 7/279 (2%)
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
VA D G SKGYGFV F+ ++SA ++IEK+NGMLLN K+V+VG F+ + +R+ E+ +
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAK 494
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TNVY+KN+ E+ E++L + F +YGTITS VM DG S+ FGFV FE+ +A +AV
Sbjct: 495 LYTNVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAV 554
Query: 261 EALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
L+GKK + K +YV +AQKK+ER+ ELK +FEQ E +++QG NLY+KNLDD+IDD
Sbjct: 555 TELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 614
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
E+L++ FS FG+I S KVM D G S+G GFV FS+PEEA++A+ +MNG++V +KPLYV
Sbjct: 615 ERLRREFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 673
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
LAQRK+DR+A L +Q++Q ++ P+Y PGA
Sbjct: 674 LAQRKKDRKAHLDSQYSQRNTNMRMQSIG---PIYQPGA 709
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 145/253 (57%), Gaps = 20/253 (7%)
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNI 114
T S GYG+V+F Q A +++E +N LNGK + V + R+ ++ G N+
Sbjct: 440 TGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYTNV 499
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+IKN+D+ ++ K L + F +G I SCKV +G S+G+GFV F++ + A+KA+ +L+G
Sbjct: 500 YIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHG 559
Query: 175 MLLND-KQVYVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTTEEDLQK 221
+ K YV +K ER E IN+ + N+YVKNL ++ +E L++
Sbjct: 560 KKSPEGKTYYVNRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDDERLRR 619
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +GTI SA VM D DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K
Sbjct: 620 EFSAFGTIKSAKVMMD-DGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRK 678
Query: 282 SERELELKHQFEQ 294
+R+ L Q+ Q
Sbjct: 679 KDRKAHLDSQYSQ 691
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 184/242 (76%), Gaps = 3/242 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+A+VT++ LY++FN + V SVR+CRD TRRSLGY YVN+++ +A RAL
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LNFT + G+P R+M+ RDP+ R++ GN+F+KNLDK+ID+K L DTFS FGNI+SCK
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD+ G+S GYGF+ F++ +SA++AI +LNG +L D+ +YVG F +K ER +E +K+ F
Sbjct: 131 IATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT-F 189
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVK++ +S TE+ L K FG YG I+S V+ D G+ FGFVNFEN D A AV A
Sbjct: 190 TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVAA 247
Query: 263 LN 264
L+
Sbjct: 248 LH 249
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 210/379 (55%), Gaps = 35/379 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L+ ++ + L+D F+ G ++S ++ D+ + SLGYG+++F +A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 85 LNFTPLNGKPIRV--------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
LN L +PI V +S +D + N+++K++ K+ L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I S + +D G + +GFV F+N +SA+ A+ L+ L+ VG L +
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTP----VGVELDSTAETSA 268
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
N++ SE++++++ ++ + T +S +D G S N + S D
Sbjct: 269 DNEAGAD-------SETSSKQESGEASNKKQTASSET-SKDSSGTSNEEFAQNEDGSADK 320
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+ + YV +AQKK+ER++ LK Q E +KE+ ++QG NLY+KNL DS
Sbjct: 321 NVSADV------QPNRLYVSRAQKKNERQVVLKSQHEA-VKESHQRYQGVNLYVKNLADS 373
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
I++E L+ +F PFG+++S + D SG+SRG GFV+F +P+EA++A+ EM+ K+V KPL
Sbjct: 374 INEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPL 433
Query: 377 YVALAQRKEDRRARLQAQF 395
YV L +RKE R RLQ +
Sbjct: 434 YVGLHERKEQRALRLQQRI 452
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L TE L + F ++S + RD +S + +VN+ + DA RA++ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + + A+ + N+++KNLD SID++ L
Sbjct: 74 NFTCIRGRPCRIMWCLRDP----------------ASRRNNDGNVFVKNLDKSIDNKTLF 117
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FG+I SCK+ D G S G GF+ F + A A+ +NG ++ +P+YV Q+
Sbjct: 118 DTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQK 177
Query: 384 KEDR 387
K +R
Sbjct: 178 KAER 181
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 184/242 (76%), Gaps = 3/242 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVGDL+A+VT++ LY++FN + V SVR+CRD TRRSLGY YVN+++ +A RAL
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LNFT + G+P R+M+ RDP+ R++ GN+F+KNLDK+ID+K L DTFS FGNI+SCK
Sbjct: 71 DTLNFTCIRGRPCRIMWCLRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNIMSCK 130
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ATD+ G+S GYGF+ F++ +SA++AI +LNG +L D+ +YVG F +K ER +E +K+ F
Sbjct: 131 IATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKDKT-F 189
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVK++ +S TE+ L K FG YG I+S V+ D G+ FGFVNFEN D A AV A
Sbjct: 190 TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKGRP--FGFVNFENPDSAKAAVAA 247
Query: 263 LN 264
L+
Sbjct: 248 LH 249
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 206/379 (54%), Gaps = 35/379 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L+ ++ + L+D F+ G ++S ++ D+ + SLGYG+++F +A A A+
Sbjct: 101 NVFVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGK-SLGYGFIHFEHADSAKEAISR 159
Query: 85 LNFTPLNGKPIRV--------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
LN L +PI V +S +D + N+++K++ K+ L+ F +G
Sbjct: 160 LNGAVLGDRPIYVGKFQKKAERFSEKDKTFT-----NVYVKHIPKSWTEDLLYKIFGVYG 214
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I S + +D G + +GFV F+N +SA+ A+ L+ L+ V E
Sbjct: 215 KISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNALVTPVGV-------------E 259
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
++ + T V + ++S T S E G ++ G+ G N E++ +
Sbjct: 260 LDSTAETPVDNEAGADSET-----SSKQESGEASNKKQTASGEASKDSSGTSNEESAQNE 314
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
+ + YV +AQKK+ER++ LK Q E +KE+ ++QG NLY+KNL DS
Sbjct: 315 DGSADKNVSADVQPNRLYVSRAQKKNERQVVLKSQHEA-VKESHQRYQGVNLYVKNLADS 373
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
I++E L+ +F PFG+++S + D SG+SRG GFV+F +P+EA++A+ EM+ K+V KPL
Sbjct: 374 INEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPL 433
Query: 377 YVALAQRKEDRRARLQAQF 395
YV L +RKE R RLQ +
Sbjct: 434 YVGLHERKEQRALRLQQRI 452
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 22/271 (8%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ +LD + L++ F++ + S ++ D L +S GY +V +++ A++A+
Sbjct: 11 SASLYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERAL 70
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+ LN + + + LR D ++ NV+VKNL +S + L +F +G I
Sbjct: 71 DTLNFTCIRGRPCRIMWCLR----DPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + D +GKS +GF++FE++D A A+ LNG D+ YVGK QKK+ER E
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFSEKD 186
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
F N+Y+K++ S ++ L ++F +G I+S + D G R G
Sbjct: 187 KTF-------------TNVYVKHIPKSWTEDLLYKIFGVYGKISSLVLQSDSKG--RPFG 231
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
FV F P+ A A+ ++ +V P+ V L
Sbjct: 232 FVNFENPDSAKAAVAALHNALVT--PVGVEL 260
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L TE L + F ++S + RD +S + +VN+ + DA RA++ L
Sbjct: 14 LYVGDLDADVTETMLYEIFNSVAVVSSVRICRDALTRRSLGYAYVNYNSVADAERALDTL 73
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + + A+ + N+++KNLD SID++ L
Sbjct: 74 NFTCIRGRPCRIMWCLRDP----------------ASRRNNDGNVFVKNLDKSIDNKTLF 117
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FG+I SCK+ D G S G GF+ F + A A+ +NG ++ +P+YV Q+
Sbjct: 118 DTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQK 177
Query: 384 KEDR 387
K +R
Sbjct: 178 KAER 181
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/253 (51%), Positives = 184/253 (72%), Gaps = 5/253 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG QF SLY GDL +V ++ LY++FN +G V S+RVCRD TR+SLGY Y+NF
Sbjct: 41 GGVPTQQFA--SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFH 98
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N +A RAL+ LN++P+NG+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS
Sbjct: 99 NVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFS 158
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVA +G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + +R
Sbjct: 159 LFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADR 218
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ + FTNVY+K++ S TEE +++ FG +G ITS + D G+ F FVNF
Sbjct: 219 -SDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEF 275
Query: 254 DDAARAVEALNGK 266
+ A AVE ++G+
Sbjct: 276 EQARAAVEDMDGE 288
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 20/258 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
+++ +L ++ L++ F+ G + S +V D + +S GY ++ F N A++A++
Sbjct: 50 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 109
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN +N + L RD + +S NVYVKNL + + L +F +G I S
Sbjct: 110 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 165
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V DGKS+ FGFV+FE+ + A A+ LNG + +K YV + +K ++R
Sbjct: 166 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKN 225
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
F N+YIK++ S +EK+++ F FG ITS + DP G R FV
Sbjct: 226 F-------------TNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKG--RRFAFV 270
Query: 352 AFSTPEEASRALLEMNGK 369
F+ E+A A+ +M+G+
Sbjct: 271 NFAEFEQARAAVEDMDGE 288
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDD 255
+ +F ++Y +L+ E L + F G + S V RD KS + ++NF N D
Sbjct: 43 VPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVAD 102
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA-NLYIKNLD 314
A RA++ LN + + L H ++ A + GA N+Y+KNLD
Sbjct: 103 AERALDTLNYSPINGRPC-----------RLMWSH------RDPALRRSGAGNVYVKNLD 145
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ID++ L FS FG+I SCKV P G SRG GFV F + E A A+ ++NG + K
Sbjct: 146 RNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 205
Query: 375 PLYVALAQRKEDR 387
+YVA ++ DR
Sbjct: 206 TVYVAQFKKTADR 218
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/410 (38%), Positives = 237/410 (57%), Gaps = 48/410 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL +V + L +LF+++G+ V S+ VCRD T RSLGY YVNF N+ +A RA
Sbjct: 138 TSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERA 197
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN++ + G+P R+M+S RDP+ RKS GNIF+KNLDK +D+ L DTFS FGNILSC
Sbjct: 198 LDTLNYSQIMGRPCRIMWSLRDPTKRKSNVGNIFVKNLDKQVDNAMLFDTFSKFGNILSC 257
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
K+ + G SKGYG+V F+ +ES+ +AI+ +NG +L K + V F+ K ER E N+ K
Sbjct: 258 KIEYE-KGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKNEHK 316
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+++KN+ E T E LQ +G I S ++ D +GKSK GFV F++ +DA R ++
Sbjct: 317 ---LFIKNIDELATVEQLQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQRLMD 373
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ----------------- 304
+ K + + + K ER +E + +Q +
Sbjct: 374 NPEPIQILSKPITIDRIKNKMERNIEHRQIKQQQANGNPNNNNNVVNNSTAPTVAATTTT 433
Query: 305 ------------------------GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
L+I N+D+SID E +++ F+ G+I K++++
Sbjct: 434 TTTTVDSNGNPTNSSNNNNSVAPTNLTLFIHNIDESIDKEVIREEFAKHGTILGIKIVQE 493
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+G +RG GF+++ST EEA+ A+ +MNG ++ SKPL V+ + RK +R +
Sbjct: 494 -NGKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKKRMQ 542
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 138/257 (53%), Positives = 190/257 (73%), Gaps = 6/257 (2%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+E+LN+ L GKP+R+M+S RDPS R SG GN+F+KNLD++ID+K L D FSAFG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KVA D +G SKGYGFVQF ++ S A NG L+ ++ ++V F+ + + D KS+
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWD----KSR 116
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKNL E+ T+ DL++ FGE+G ITSAVVM+DG+GKS+ FGFVNFE ++ A A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFE-QNMKEAADKFQGANLYIKNLDDSIDD 319
E +NG D+KE +VG+AQ+K+ R +LK +FE + + +G NLY+KNLDDS+D+
Sbjct: 177 EKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 320 EKLKQLFSPFGSITSCK 336
KL++LFS FG+ITSCK
Sbjct: 237 TKLEELFSEFGTITSCK 253
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 17/226 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + QL D+F+ G+V+S +V RD S S GYG+V F + A
Sbjct: 29 GRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG-VSKGYGFVQFYSDLSVYTA 87
Query: 82 LEMLNFTPLNGKPIRVM-YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
N T + + I V + R + N+++KNL + L F FG I S
Sbjct: 88 CNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 147
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
V D G+S+ +GFV F+ E+A AIEK+NG+++++K+++VG RK R TE K+
Sbjct: 148 AVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-TEDLKA 206
Query: 201 KF--------------TNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
KF N+YVKNL +S L++ F E+GTITS
Sbjct: 207 KFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 252
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
ERD S NV+VKNL ES + L F +G + S V RD G SK +GFV F
Sbjct: 20 ERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFY 79
Query: 252 NSDDAARAVEALNGKKFDDKEW----YVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
+ A NG ++ +V + Q R N
Sbjct: 80 SDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVF-------------------TN 120
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
+Y+KNL ++ D LK+LF FG ITS VM+D G SR GFV F E A A+ +MN
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQF 395
G +V K L+V AQRK +R L+A+F
Sbjct: 181 GVVVDEKELHVGRAQRKTNRTEDLKAKF 208
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 18/140 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L TD+ L LF + G++ S V +D +S +G+VNF A+ A A+E
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 84 MLNFTPLNGKPIRVMYSHRDPS-----------------LRKSGAGNIFIKNLDKAIDHK 126
+N ++ K + V + R + ++ N+++KNLD ++D+
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 127 ALHDTFSAFGNILSCKVATD 146
L + FS FG I SCK A +
Sbjct: 238 KLEELFSEFGTITSCKYACN 257
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 155/385 (40%), Positives = 235/385 (61%), Gaps = 38/385 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL A+V + L +LF+++G+ + S+ VCRD +T RSLGY YVNF N +A RA
Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERA 243
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN+T ++GKP R+M+S+RDP+ RK+ GNIF+KNL+K +D+ L+DTFS+FGNILSC
Sbjct: 244 LDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSC 303
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
KV + G SKGYG+V F+ +SA+KAIEK+NG L+ K + V F+ K ER NK
Sbjct: 304 KVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENK-- 360
Query: 202 FTNVYVKNLSESTTEEDLQKSF-GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA---- 256
V+ +N ES T E LQ+ +G I S ++ D +GKSK G V F+N +DA
Sbjct: 361 ---VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKIL 417
Query: 257 ----ARAVEALNGK----------KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK 302
A + ++G + + K + + + K ER F + K+ D
Sbjct: 418 TESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVER-------FTEYRKKTTD- 469
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRA 362
+L+I N+D+SID + +K+ F+ G+I K+++D + ++G GF++FS +EA +A
Sbjct: 470 ---LSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKA 526
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDR 387
L +NG SK + V+ + + ++
Sbjct: 527 LDSLNGFTFGSKQIQVSFSNKDNNQ 551
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDPSGI-SRGSGFVAFSTPEEAS 360
Q +LY+ +L +++ L +LFS G +I S V RD + + S G +V F +A
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL +N +V KP + + R +R
Sbjct: 242 RALDTLNYTLVHGKPCRIMWSYRDPTKR 269
>gi|328876647|gb|EGG25010.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 748
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 228/392 (58%), Gaps = 36/392 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
TSLYVGDL V + L +LF+++G+ V S+ VCRD +T RSLGY YVNF N+ +A RA
Sbjct: 130 TSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAERA 189
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ LN++ + G+P R+M+SHRDP+ RKS GNIF+KNL+K +D+ L DTFS +GNILSC
Sbjct: 190 LDTLNYSLILGRPCRIMWSHRDPTKRKSNVGNIFVKNLEKNVDNALLFDTFSTYGNILSC 249
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
K+ + G SKGYG+V F+N+ES+++AI K+NG +L K + V F+ K ER E K
Sbjct: 250 KIEYE-KGISKGYGYVHFENQESSEQAILKVNGTILLGKPIIVEPFVSKVERFKE--KKN 306
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+++KN+ E+ T E LQ+ +G I S + D GK K FV F+ S+DA +E
Sbjct: 307 ENKLFIKNIDENVTSEMLQQELSRFGEIESCNIRTDPTGKPKGLAFVEFKTSEDAQALLE 366
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQ-------------------------FEQNM 296
+ K+ + + K ER +E + +QN
Sbjct: 367 STEAITILSKQITFDRIKNKVERSIEKNQKLINELNNNNNNHNNNNINHHINSSSLQQNG 426
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
+ + Q L+I N+D +D E +++ F+ G+I K+ SRG F+ +ST
Sbjct: 427 STSQQQQQNLTLFINNIDMEVDKEIIREEFAKHGNILGIKIK------SRGFAFLTYSTQ 480
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
EEA+ A+ +MNG + +K L V+L+ ++++R
Sbjct: 481 EEAAVAIEKMNGYVFGTKALVVSLSNSRKEKR 512
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 143/326 (43%), Gaps = 61/326 (18%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +LE NV ++ L+D F+ G ++S ++ + S GYGYV+F N + + +A+
Sbjct: 221 NIFVKNLEKNVDNALLFDTFSTYGNILSCKI--EYEKGISKGYGYVHFENQESSEQAILK 278
Query: 85 LNFTPLNGKPIRV--MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+N T L GKPI V S + K +FIKN+D+ + + L S FG I SC
Sbjct: 279 VNGTILLGKPIIVEPFVSKVERFKEKKNENKLFIKNIDENVTSEMLQQELSRFGEIESCN 338
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ TD G+ KG FV+F E AQ +E + + KQ+ K ER E N+ K
Sbjct: 339 IRTDPTGKPKGLAFVEFKTSEDAQALLESTEAITILSKQITFDRIKNKVERSIEKNQ-KL 397
Query: 203 TN--------------------------------------VYVKNLSESTTEEDLQKSFG 224
N +++ N+ +E +++ F
Sbjct: 398 INELNNNNNNHNNNNINHHINSSSLQQNGSTSQQQQQNLTLFINNIDMEVDKEIIREEFA 457
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
++G I + KS+ F F+ + ++AA A+E +NG F K V + + E+
Sbjct: 458 KHGNILGIKI------KSRGFAFLTYSTQEEAAVAIEKMNGYVFGTKALVVSLSNSRKEK 511
Query: 285 ELELKHQFEQNMKEAADKFQGANLYI 310
+ +D QG N Y+
Sbjct: 512 RI------------PSDSLQGPNPYM 525
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 20/181 (11%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYG--TITSAVVMRDGDG-KSKCFGFVNFENSDDAA 257
+FT++YV +LS+ E L + F + G + S V RD +S + +VNF NS DA
Sbjct: 128 QFTSLYVGDLSQEVNELILAELFSKVGRTAVASIHVCRDSATLRSLGYAYVNFYNSVDAE 187
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RA++ LN + + + + + K N+++KNL+ ++
Sbjct: 188 RALDTLNYSLILGRPCRIMWSHRDPTKR----------------KSNVGNIFVKNLEKNV 231
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
D+ L FS +G+I SCK+ + GIS+G G+V F E + +A+L++NG +++ KP+
Sbjct: 232 DNALLFDTFSTYGNILSCKIEYE-KGISKGYGYVHFENQESSEQAILKVNGTILLGKPII 290
Query: 378 V 378
V
Sbjct: 291 V 291
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 163/385 (42%), Positives = 224/385 (58%), Gaps = 39/385 (10%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ SLYVGDL+ +V + L++LF+ +G VVSVRVCRD+ TRRSLGY YVNF N ++A
Sbjct: 172 ELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYVNFQNPEDAE 231
Query: 80 RALEMLNF--TPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
RA+++L F PL KPIR+M+ DPS R++ GNIFIKNLDK+ID+KAL+DTFS FG
Sbjct: 232 RAIDVLQFYEGPLTKNKPIRIMWKRSDPSQRRNPEGNIFIKNLDKSIDNKALYDTFSTFG 291
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD-T 195
+LSCK+ATD G S GY FV + + A+ I K+NGMLLN ++VYVG F ++ER+ T
Sbjct: 292 KVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGEFRPRREREAT 351
Query: 196 EINKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+KFTNVYVKNL ES T E++ K F YG ITS F+ E
Sbjct: 352 GELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGNITSI--------------FIPTETVQ 397
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+ E + ++ G+ Q S +E++ AD+ A +L+
Sbjct: 398 EQQPHHEDEHRAPSEEASSEAGR-QGGSSQEVK---------SAGADQSNAA----PDLE 443
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
S ++ K +P + V+R RG FV F TPE+A+ A+ +NG + K
Sbjct: 444 TSERNDGAK---APENRAHAQSVVRV---RPRGFAFVNFETPEQAAAAVEALNGMELNGK 497
Query: 375 PLYVALAQRKEDRRARLQAQFAQMR 399
LYV AQ+K +R A L+AQ Q+R
Sbjct: 498 TLYVGRAQKKAEREAMLRAQMEQLR 522
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 223/432 (51%), Gaps = 60/432 (13%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L+ ++ + LYD F+ G+V+S ++ D SLGY +V++ +A A + +
Sbjct: 269 IFIKNLDKSIDNKALYDTFSTFGKVLSCKLATD-DKGNSLGYAFVHYQDANVAKYVISKM 327
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAG-------NIFIKNLDKAI-DHKALHDTFSAFGN 137
N LNG+ +V P + G N+++KNLD+++ + + F+ +GN
Sbjct: 328 NGMLLNGQ--KVYVGEFRPRREREATGELSTKFTNVYVKNLDESLCTTEEVTKLFAPYGN 385
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
I S + T+ VQ E+ E H +E +E
Sbjct: 386 ITSIFIPTET---------VQ---EQQPHHEDE---------------HRAPSEEASSEA 418
Query: 198 NKSKFTNVYVKNLS--ESTTEEDLQKSFGEYGT--------ITSAVVMRDGDGKSKCFGF 247
+ ++ VK+ +S DL+ S G S V +R + F F
Sbjct: 419 GRQGGSSQEVKSAGADQSNAAPDLETSERNDGAKAPENRAHAQSVVRVRP-----RGFAF 473
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VNFE + AA AVEALNG + + K YVG+AQKK+ERE L+ Q EQ + K Q N
Sbjct: 474 VNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQMEQLRNDRMQKLQDVN 533
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
L++KNL D +D+ +L++ FS FG+ITS ++MRD G+S+G GFVAFS P+EA +A+ EMN
Sbjct: 534 LFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEMN 593
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPPGAWIWLSAA 425
++V KP+YVALAQRK+ RRA+++AQ A M M S + P + MY PG +
Sbjct: 594 QRIVGQKPIYVALAQRKDQRRAQIEAQRAAMMRAQM-SFLPPGLAASMYVPGTGM----P 648
Query: 426 ACSWYEARWGSH 437
S Y + H
Sbjct: 649 TPSGYPYPYAVH 660
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 128/242 (52%), Gaps = 25/242 (10%)
Query: 104 PSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFV 157
P+ SG G ++++ +L + + L + FS+ G ++S +V D+ +S GY +V
Sbjct: 163 PAASASGTGELPNVSLYVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTRRSLGYAYV 222
Query: 158 QFDNEESAQKAIEKLN---GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
F N E A++AI+ L G L +K + + + D ++ N+++KNL +S
Sbjct: 223 NFQNPEDAERAIDVLQFYEGPLTKNKPIRI----MWKRSDPSQRRNPEGNIFIKNLDKSI 278
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
+ L +F +G + S + D G S + FV++++++ A + +NG + ++ Y
Sbjct: 279 DNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVY 338
Query: 275 VGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLKQLFSPFGSIT 333
VG+ + + ERE E + KF N+Y+KNLD+S+ E++ +LF+P+G+IT
Sbjct: 339 VGEFRPRREREA---------TGELSTKF--TNVYVKNLDESLCTTEEVTKLFAPYGNIT 387
Query: 334 SC 335
S
Sbjct: 388 SI 389
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 215/366 (58%), Gaps = 54/366 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVG+L ++ ++ L + F G V SV+VCRD T +SLGY ++NF Q+ + A E
Sbjct: 39 TSLYVGELAPHIDEAMLKEHF---GNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFE 95
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + ++G R+M S R+ + R SGAGNI +KNL +D+K+L+DTFS +GN++SC+V
Sbjct: 96 NLNHSKIDGTTYRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRV 155
Query: 144 ATDLNGQS-KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS-- 200
L G S KGYGFV +D +A++AI +NG +L K+V+ H + K E+++ ++ +
Sbjct: 156 FNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQ 215
Query: 201 ---KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+FTNVYVKNLS TE+DL + F G ++S +V RD K K FGFVNFE +DA
Sbjct: 216 QHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQHKPKGFGFVNFELPEDAE 275
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
RAV L+ K F + +
Sbjct: 276 RAVNELHDKDF--------------------------------------------FAEDV 291
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
DE L F P+G+ITS K+M+D S G +G GFV FS+ +EA+RA+ EMNG+ + SKP+
Sbjct: 292 TDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAVAEMNGRFISSKPI 351
Query: 377 YVALAQ 382
YVALAQ
Sbjct: 352 YVALAQ 357
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 126/270 (46%), Gaps = 46/270 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++ + +L NV + LYD F++ G V+S RV L+ GYG+VN+ A RA
Sbjct: 122 GAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERA 181
Query: 82 LEMLNFTPLNGKPIRV-----------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
+ +N L GK + + SH D + N+++KNL + L +
Sbjct: 182 ISFVNGKMLFGKEVHASHQVLKNEKESLLSHNDQ--QHCRFTNVYVKNLSSDVTEDDLGE 239
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FS G + S V D + KG+GFV F+ E A++A+ +L+ DK +
Sbjct: 240 LFSTIGPVSSVLVQRDDQHKPKGFGFVNFELPEDAERAVNELH-----DKDFF------- 287
Query: 191 QERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVN 249
+E T+E L +F YGTITSA +M+D G K FGFV
Sbjct: 288 --------------------AEDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVC 327
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
F +SD+A RAV +NG+ K YV AQ
Sbjct: 328 FSSSDEANRAVAEMNGRFISSKPIYVALAQ 357
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
T++YV L+ E L++ FG + S V RD +S + +NF D + A E
Sbjct: 39 TSLYVGELAPHIDEAMLKEHFG---NVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFE 95
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA-NLYIKNLDDSIDDE 320
LN K D + + SERE + GA N+ +KNL ++D++
Sbjct: 96 NLNHSKIDGTTYRL----MISERE-------------TTKRVSGAGNIILKNLHPNVDNK 138
Query: 321 KLKQLFSPFGSITSCKVMRDPSGIS-RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
L FS +G++ SC+V +G S +G GFV + T A RA+ +NGKM+ K ++ +
Sbjct: 139 SLYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHAS 198
Query: 380 LAQRKEDRRARL 391
K ++ + L
Sbjct: 199 HQVLKNEKESLL 210
>gi|62751624|ref|NP_001015753.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
gi|58476781|gb|AAH89689.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
(Silurana) tropicalis]
Length = 217
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 164/213 (76%), Gaps = 3/213 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYVGDL +VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +
Sbjct: 5 ASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKV D NG SKGY FV F+ +++A +AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL 183
Query: 198 --NKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
+FTNVY+KN E +E L+++F +YG
Sbjct: 184 GAKAKEFTNVYIKNFGEDMDDERLKETFSKYGC 216
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 16/220 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I
Sbjct: 71 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 126
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE D A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 127 SCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAEL-- 183
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
A + N+YIKN + +DDE+LK+ FS +G
Sbjct: 184 --------GAKAKEFTNVYIKNFGEDMDDERLKETFSKYG 215
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K + +Q R+ L+ K N++IKNLD SID++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKSIDNKAL 115
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV+ D +G S+G FV F T + A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 383 RKEDRRARLQAQ 394
+ +R A L A+
Sbjct: 175 CRREREAELGAK 186
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MHTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 166/218 (76%), Gaps = 3/218 (1%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG QF SLY GDL +V ++ LY++FN +G V S+RVCRD TR+SLGY Y+NF
Sbjct: 40 GGVPTQQFA--SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFH 97
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
N +A RAL+ LN++P+NG+P R+M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS
Sbjct: 98 NVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFS 157
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FGNILSCKVA +G+S+G+GFV F+++ESA+ AI KLNGM + +K VYV F + +R
Sbjct: 158 LFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADR 217
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
++ + FTNVY+K++ S TEE +++ FG +G ITS
Sbjct: 218 -SDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
+++ +L ++ L++ F+ G + S +V D + +S GY ++ F N A++A++
Sbjct: 49 SLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN +N + L RD + +S NVYVKNL + + L +F +G I S
Sbjct: 109 LNYSPINGRPCR----LMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILS 164
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V DGKS+ FGFV+FE+ + A A+ LNG + +K YV + +K ++R
Sbjct: 165 CKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKN 224
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS 334
F N+YIK++ S +EK+++ F FG ITS
Sbjct: 225 F-------------TNVYIKHIPPSWTEEKIREEFGAFGEITS 254
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDD 255
+ +F ++Y +L+ E L + F G + S V RD KS + ++NF N D
Sbjct: 42 VPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVAD 101
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA-NLYIKNLD 314
A RA++ LN + + L H ++ A + GA N+Y+KNLD
Sbjct: 102 AERALDTLNYSPINGRPC-----------RLMWSH------RDPALRRSGAGNVYVKNLD 144
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ID++ L FS FG+I SCKV P G SRG GFV F + E A A+ ++NG + K
Sbjct: 145 RNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEK 204
Query: 375 PLYVALAQRKEDR 387
+YVA ++ DR
Sbjct: 205 TVYVAQFKKTADR 217
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++YV +L+ N+ + LYD F+ G ++S +V +S G+G+V+F + + A A
Sbjct: 134 GAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGN 137
+ LN + K + V + + R G+ N++IK++ + + + + F AFG
Sbjct: 193 IAKLNGMQIGEKTVYVA-QFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGE 251
Query: 138 ILSCKVAT 145
I S + T
Sbjct: 252 ITSFAMQT 259
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 118/160 (73%), Positives = 145/160 (90%)
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AV+ LNGKKFDDKEWYVG+AQKKS RE+ELK +FE+N++EAADK+Q NLY+KNLDDS+
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSV 60
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DD+KL++LF+ +G+ITSCKVMRD +G+SRGSGFVAF + E+ASRAL EMN KMV SKPLY
Sbjct: 61 DDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLY 120
Query: 378 VALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPG 417
VALAQRKEDR+ARLQAQF+Q+RPV +A +V PRMPM+PPG
Sbjct: 121 VALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPG 160
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 14/141 (9%)
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSES 213
+A+++LNG +DK+ YVG +K R+ E+ K KF TN+Y+KNL +S
Sbjct: 1 QAVQELNGKKFDDKEWYVGRAQKKSGREMEL-KEKFEKNLQEAADKYQNTNLYLKNLDDS 59
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
++ L++ F EYGTITS VMRD +G S+ GFV F++++DA+RA+ +N K K
Sbjct: 60 VDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPL 119
Query: 274 YVGKAQKKSERELELKHQFEQ 294
YV AQ+K +R+ L+ QF Q
Sbjct: 120 YVALAQRKEDRKARLQAQFSQ 140
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ++D L + F+ +G I SCKV D NG S+G GFV F + E A +A+ ++
Sbjct: 50 NLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEM 109
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
N ++ K +YV RK++R + +++F+ + L+ S
Sbjct: 110 NSKMVGSKPLYVALAQRKEDRKARL-QAQFSQLRPVPLAPSV 150
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+++ T+LY+ +L+ +V D +L +LF + G + S +V RD S S G G+V F +A++
Sbjct: 43 ADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRD-SNGVSRGSGFVAFKSAED 101
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RAL +N + KP+ V + R
Sbjct: 102 ASRALAEMNSKMVGSKPLYVALAQR 126
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 152/195 (77%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RDPSLRKSG GN+FIKNLD +ID KAL+DTFSAFGNILSCKV
Sbjct: 63 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKVV 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKF 202
D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ +F
Sbjct: 123 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 181
Query: 203 TNVYVKNLSESTTEE 217
TNVY+KN E +E
Sbjct: 182 TNVYIKNFGEEVDDE 196
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 113/210 (53%), Gaps = 16/210 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + KS NV++KNL S ++ L +F +G I
Sbjct: 62 TMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL
Sbjct: 118 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL-- 174
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
A + N+YIKN + +DDE
Sbjct: 175 --------GAKAKEFTNVYIKNFGEEVDDE 196
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K + +Q R+ L+ K N++IKNLD+SIDD+ L
Sbjct: 63 MNFDVIKGKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDNSIDDKAL 106
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV+ D +G S+G FV F T E A +A+ +MNG ++ + ++V +
Sbjct: 107 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 165
Query: 383 RKEDRRARLQAQ 394
+++R A L A+
Sbjct: 166 SRKEREAELGAK 177
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G + S +V RD + S G +V F P +A RAL
Sbjct: 2 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN ++ KP+ + +QR R
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLR 85
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 170/487 (34%), Positives = 248/487 (50%), Gaps = 86/487 (17%)
Query: 14 GGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G AN Q SLYVGDL V +++L++LF+ +G V+SVRVCRD TR SLGYGYVNF
Sbjct: 68 GPVPANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNF 127
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+ A++A A+ LNF L+G+ IR+M RDP R+SG GNIFI L L DTF
Sbjct: 128 NKAEDAEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTF 187
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHF-LRK 190
FG ILSCK D +G+ +G+GFV F++ + A++AI + NG D+++ V F RK
Sbjct: 188 EQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRK 247
Query: 191 Q-ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----MRDGDGKSKCF 245
Q E++ E FTNVYVK+L EE+L K F YG ITS + ++D + + +
Sbjct: 248 QREQEQEERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPY 304
Query: 246 GFVNFENSDDAARAVEA----------LNGKKFDDK---EWYVGKAQKKSERELELKH-- 290
GFVNF +++ A + VE ++G F++ E +V ++ + E+E H
Sbjct: 305 GFVNFADTEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQ 364
Query: 291 -------------------------QFEQNMKEAADKFQGANLY---------------- 309
+ M+ A D A LY
Sbjct: 365 VADGKLSGFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRR 424
Query: 310 -----------------IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
+KN ++++ +E L++ F G + S KVMRD G+SR GFV
Sbjct: 425 RLQERRRELRQRGGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVT 484
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
F+T EEA A+ + N + + +P+YVA +++R+AR Q Q Q M + P+ P
Sbjct: 485 FATREEAESAIAKKNRQPLQDRPIYVAFHLTRQERQARKQQQHPQHPQQGM--YMYPQYP 542
Query: 413 MYPPGAW 419
P GA+
Sbjct: 543 GMPMGAF 549
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 156/207 (75%), Gaps = 2/207 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N + SLYVGDL +VT++ L++ F+ G V+S+RVCRDL RRSLGY YVNF
Sbjct: 6 NGPNYPVASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPV 65
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+PIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFG
Sbjct: 66 DAERALDTMNFDMVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFG 125
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVATD SKGYGFV F+ EE+A AI+K+NGMLLN ++V+VG F+ + ER+ +
Sbjct: 126 NILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQ 185
Query: 197 INKS--KFTNVYVKNLSESTTEEDLQK 221
+ + +F NVY+KN + +E L++
Sbjct: 186 LGQKARRFMNVYIKNFGDDLDDEKLRE 212
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 116/217 (53%), Gaps = 15/217 (6%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAI 169
++++ +L + L + FS+ G +LS +V DL + S GY +V F A++A+
Sbjct: 12 VASLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERAL 71
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+ +N ++ + + + +RD + KS NV++KNL +S + + +F +G I
Sbjct: 72 DTMNFDMVKGRPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNI 127
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V D + SK +GFV+FE + A A++ +NG + ++ +VGK +SERE +L
Sbjct: 128 LSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLG 187
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+ + M N+YIKN D +DDEKL+++
Sbjct: 188 QKARRFM----------NVYIKNFGDDLDDEKLREML 214
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEAL 263
+YV +L TE L + F G + S V RD + S + +VNF+ DA RA++ +
Sbjct: 15 LYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTM 74
Query: 264 NGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
N FD G+ + S+R+ L+ K N++IKNLD SID++
Sbjct: 75 N---FD---MVKGRPIRIMWSQRDPSLR------------KSGVGNVFIKNLDKSIDNKA 116
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+ FS FG+I SCKV D S+G GFV F T E A+ A+ ++NG ++ + ++V
Sbjct: 117 MYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKF 176
Query: 382 QRKEDRRARL 391
+ +R +L
Sbjct: 177 VPRSEREKQL 186
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/229 (52%), Positives = 163/229 (71%), Gaps = 3/229 (1%)
Query: 59 LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
+ T SLGY YV+F + RAL+ +NF + GKP+R+M+S DPSL KS NIFIKN
Sbjct: 1 MITCHSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRIMWSQHDPSLHKSEVSNIFIKN 60
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
L K+ID+KAL+DTF AFGNILSCKV D NG SKGYGFV F+ +E+ ++AIEK++GMLLN
Sbjct: 61 LGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGMLLN 119
Query: 179 DKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
D +V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G VM
Sbjct: 120 DFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPALRVKVMT 179
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
D GKSK FGFV+FE +DA +AV +NGK+ + K+ Y+G+AQKK E++
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQ 228
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 136/243 (55%), Gaps = 15/243 (6%)
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVY 206
+ S GY +V F ++A++ +N ++ K V + + D ++KS+ +N++
Sbjct: 2 ITCHSLGYTYVDFQKPTDMERALDTMNFDVIKGKPVRI----MWSQHDPSLHKSEVSNIF 57
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
+KNL +S + L +F +G I S V+ D +G SK +GFV+FE + RA+E ++G
Sbjct: 58 IKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKMSGM 116
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLF 326
+D + +VG+ + + ERE EL A + N+YIKN + +DDE LK LF
Sbjct: 117 LLNDFKVFVGQFKSRKEREAEL----------GARAKEFTNVYIKNFGEDMDDEHLKDLF 166
Query: 327 SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
FG KVM D SG S+G GFV+F E+A +A+ EMNGK + K +Y+ AQ+K +
Sbjct: 167 GKFGPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVE 226
Query: 387 RRA 389
++
Sbjct: 227 QQT 229
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++++ +L ++ + LYD F G ++S +V D + S GYG+V+F + RA+
Sbjct: 53 VSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG--SKGYGFVHFETQEAVERAI 110
Query: 83 EMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFG 136
E ++ LN + V + R + GA N++IKN + +D + L D F FG
Sbjct: 111 EKMSGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFG 170
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
L KV TD +G+SKG+GFV F+ E AQKA+ ++NG LN KQ+Y+G +K E+ T
Sbjct: 171 PALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKELNGKQIYIGRAQKKVEQQT 229
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 17/150 (11%)
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+ +V+F+ D RA++ +N FD + K R + +H + K +
Sbjct: 9 YTYVDFQKPTDMERALDTMN---FD-------VIKGKPVRIMWSQHD------PSLHKSE 52
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
+N++IKNL SID++ L F FG+I SCKV+ D +G S+G GFV F T E RA+
Sbjct: 53 VSNIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIE 111
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQ 394
+M+G ++ ++V + +++R A L A+
Sbjct: 112 KMSGMLLNDFKVFVGQFKSRKEREAELGAR 141
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/181 (61%), Positives = 146/181 (80%), Gaps = 1/181 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I 197
+
Sbjct: 183 L 183
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELEL 288
ERE EL
Sbjct: 177 KEREAEL 183
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K + S+R+ L+ K N++IKNLD SID++ L
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKAL 115
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 383 RKEDRRARLQAQ 394
+++R A L A+
Sbjct: 175 SRKEREAELGAR 186
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/181 (61%), Positives = 146/181 (80%), Gaps = 1/181 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 68
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 69 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 128
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 129 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 187
Query: 197 I 197
+
Sbjct: 188 L 188
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 7 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 66
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 67 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 122
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 123 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181
Query: 282 SERELEL 288
ERE EL
Sbjct: 182 KEREAEL 188
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD + GK + S+R+ L+ K N++IKNLD SID++
Sbjct: 77 MN---FDVIK---GKPVRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNK 118
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 119 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177
Query: 381 AQRKEDRRARLQAQFAQMRP 400
+ +++R A L A+ + P
Sbjct: 178 FKSRKEREAELGARAKEFYP 197
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFV 351
+M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 5 SMNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYV 62
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 63 NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 99
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/213 (55%), Positives = 159/213 (74%), Gaps = 3/213 (1%)
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ +N + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSC
Sbjct: 1 LDTMNSDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 60
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NK 199
KV D NG SKGYGFV F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+
Sbjct: 61 KVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 119
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+FTNVY+KN E +E L++ F ++G S VM D G+SK FGFV+FE +DA +A
Sbjct: 120 KEFTNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKA 179
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
V+ +NGK+ + ++ YVG K ER+ ELK +F
Sbjct: 180 VDEMNGKEINGRQVYVGPCPXKVERQTELKRKF 212
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 123/204 (60%), Gaps = 11/204 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 20 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 78
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ERE EL A + N+YIK
Sbjct: 79 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GAKAKEFTNVYIK 128
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N + +DDE+LK++F+ FG+ S KVM D SG S+G GFV+F E+A +A+ EMNGK +
Sbjct: 129 NFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEI 188
Query: 372 VSKPLYVALAQRKEDRRARLQAQF 395
+ +YV K +R+ L+ +F
Sbjct: 189 NGRQVYVGPCPXKVERQTELKRKF 212
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 29 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 86
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D + L + F+ F
Sbjct: 87 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKF 146
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV TD +G+SKG+GFV F+ E AQKA++++NG +N +QVYVG K ER T
Sbjct: 147 GAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPXKVERQT 206
Query: 196 EINKSKF 202
E+ K KF
Sbjct: 207 EL-KRKF 212
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L ++FN+ G +SV+V D S R S G+G+V+F
Sbjct: 116 GAKAKEF--TNVYIKNFGEDMDDERLKEIFNKFGAFLSVKVMTDDSGR-SKGFGFVSFEK 172
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N +NG+ + V
Sbjct: 173 HEDAQKAVDEMNGKEINGRQVYV 195
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/283 (45%), Positives = 186/283 (65%), Gaps = 17/283 (6%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+NGMLLNDK+V+VG FL + ER ++ + +FTNVY+KN + E+ LQ F +YG +
Sbjct: 1 VNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVV 60
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-----WYVGKAQKKSER 284
S VMRD DG S+ FGFV +++ ++A AVEA+NG++ + YVG+AQKK ER
Sbjct: 61 KSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQER 120
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD---- 340
+ EL+ Q+EQ +E +FQG NLY+KNLDD++ D++L++ F+ +G+ITS K+M D
Sbjct: 121 QQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECS 180
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRP 400
SRG GFV FS+PEEA++A+ EMNG++V +KPLYVALAQR+EDR+A L AQ+ Q
Sbjct: 181 TGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQ--- 237
Query: 401 VAMASTVAPRM--PMYPPGAWIWLSAAACSWYEARWGSHAKFL 441
M S++ RM P G +A A ++ G+ ++
Sbjct: 238 -RMTSSMGVRMATPNQMIGQPFQAAAGASGYFMPFQGAQRTYM 279
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 21/205 (10%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN D K L F +G + S V D +G S+G+GFV +D+ E AQ A+E +
Sbjct: 35 NVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAM 94
Query: 173 NGMLLNDKQ-----VYVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTT 215
NG + +YVG +KQER E I + + N+YVKNL ++ T
Sbjct: 95 NGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVT 154
Query: 216 EEDLQKSFGEYGTITSAVVMRDGD----GKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
+++L+++F YGTITSA +M DG+ +S+ FGFV F + ++A +AV +NG+ K
Sbjct: 155 DDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTK 214
Query: 272 EWYVGKAQKKSERELELKHQFEQNM 296
YV AQ++ +R+ L Q+ Q M
Sbjct: 215 PLYVALAQRREDRKAHLTAQYMQRM 239
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G QF T++Y+ + + L +F + G V SV V RD S G+G+V + +
Sbjct: 27 GERVRQF--TNVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGN-SRGFGFVAYDS 83
Query: 75 AQEAARALEMLNFTPLNG--------------------KPIRVMYS-HRDPSLRKSGAGN 113
+EA A+E +N + G + +R Y + +++ N
Sbjct: 84 HEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVN 143
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD----LNGQSKGYGFVQFDNEESAQKAI 169
+++KNLD + L + F+ +G I S K+ +D +S+G+GFV F + E A KA+
Sbjct: 144 LYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAV 203
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
++NG ++ K +YV R+++R K+ T Y++ ++ S
Sbjct: 204 TEMNGRIVGTKPLYVALAQRREDR-----KAHLTAQYMQRMTSS 242
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/448 (35%), Positives = 229/448 (51%), Gaps = 84/448 (18%)
Query: 14 GGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G AN Q SLYVGDL V +++L++LF+ +G V+SVRVCRD TR SLGYGYVNF
Sbjct: 59 GPVPANPQGAAASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNF 118
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+ A++A A+ LNF L+G+ IR+M RDP R+SG GNIFI L L DTF
Sbjct: 119 NKAEDAEAAMGQLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTF 178
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHF-LRK 190
FG ILSCK D +G+ +G+GFV F++ + A++AI + NG D+++ V F RK
Sbjct: 179 EQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRK 238
Query: 191 Q-ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----MRDGDGKSKCF 245
Q E++ E FTNVYVK+L EE+L K F YG ITS + ++D + + +
Sbjct: 239 QREQEQEERTKNFTNVYVKSLRRGADEEELGKLFEPYGDITSKALRTYKLKDTE---RPY 295
Query: 246 GFVNFENSDDAARAVEA----------LNGKKFDDK---EWYVGKAQKKSERELELKH-- 290
GFVNF +++ A + VE ++G F++ E +V ++ + E+E H
Sbjct: 296 GFVNFADTEAAQKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQ 355
Query: 291 -------------------------QFEQNMKEAADKFQGANLY---------------- 309
+ M+ A D A LY
Sbjct: 356 VADGKLSGFILFKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQKKQERIRRLRR 415
Query: 310 -----------------IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
+KN ++++ +E L++ F G + S KVMRD G+SR GFV
Sbjct: 416 RLQERRRELRQRGGNLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVT 475
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVAL 380
F+T EEA A+ + N + + +P+YVA
Sbjct: 476 FATREEAESAIAKKNRQPLQDRPIYVAF 503
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 148/384 (38%), Positives = 228/384 (59%), Gaps = 18/384 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
T L + +R+ RDPS R+SG NI +K L K +D AL + FS FG + + +A
Sbjct: 69 AG-TKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKTVDTYALKELFSKFGRLTAIGLA 127
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
D G+S+GY + F+ EESA +A+++++GM ++ + + V + + Q RD + +FTN
Sbjct: 128 CDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVVERY-QAQHRDELLK--QFTN 184
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEAL 263
+YVKNL + T+E L+ F YG ++SA V G +S+ G+V FE +DAARAVE L
Sbjct: 185 LYVKNLDPAVTDEKLRAFFARYGAVSSAKVRDLGGVQSEVGLGYVAFEKHEDAARAVEEL 244
Query: 264 NGKKFDDKEWYVGKAQKKSE------RELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
NG KE + KA+ + RE + + Q + A + NLY+K DD++
Sbjct: 245 NG-----KECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTV 299
Query: 318 DDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGK-MVVSKP 375
E+L++LF +G S VM D +G+SR GFV+ AS+A+ E+NG + +P
Sbjct: 300 TSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLCPRP 359
Query: 376 LYVALAQRKEDRRARLQAQFAQMR 399
L+V A RK+ RR L+ + Q R
Sbjct: 360 LFVTYALRKDARRQNLEERSKQFR 383
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 31/195 (15%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNFSNAQEAARAL 82
T+LYV +L+ VTD +L F + G V S +V RDL +S +G GYV F ++AARA+
Sbjct: 183 TNLYVKNLDPAVTDEKLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHEDAARAV 241
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRK----------------------SGAGNIFIKNLD 120
E LNGK + + + + S N+++K D
Sbjct: 242 E-----ELNGKECEIAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFD 296
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNG-MLLN 178
+ + L + F +G +S V D G S+ +GFV ++ +A +AI++LNG L
Sbjct: 297 DTVTSERLEELFQRYGETVSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQELNGSTFLC 356
Query: 179 DKQVYVGHFLRKQER 193
+ ++V + LRK R
Sbjct: 357 PRPLFVTYALRKDAR 371
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/204 (57%), Positives = 154/204 (75%), Gaps = 2/204 (0%)
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF P+ KPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KA++DTFSAFGNILS
Sbjct: 1 ALDTMNFDPIKNKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILS 60
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
C+VATD SKGYGFV F+ EE+A AI K+NGMLLN K+V+VG F+ ++ER+ +
Sbjct: 61 CRVATDEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK 120
Query: 201 --KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+FTNVY+KN + +E L F +YG +TSA VM D +GK++ FGFV+FE+ + A +
Sbjct: 121 ARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEK 180
Query: 259 AVEALNGKKFDDKEWYVGKAQKKS 282
AVE LNGK K YVG+AQKK+
Sbjct: 181 AVEELNGKDVGGKPLYVGRAQKKA 204
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS NV++KNL +S + + +F +G I S V D + SK +GFV+FE
Sbjct: 21 QRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFE 80
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A A+ +NG + K+ +VG+ + ERE L + A +F N+YIK
Sbjct: 81 TEEAANNAISKVNGMLLNGKKVFVGRFIPRKERERLLGDK--------ARRF--TNVYIK 130
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N D +DDEKL +F +G +TS KVM D +G +RG GFV+F PE A +A+ E+NGK V
Sbjct: 131 NFGDELDDEKLVVIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDV 190
Query: 372 VSKPLYVALAQRK 384
KPLYV AQ+K
Sbjct: 191 GGKPLYVGRAQKK 203
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + +YD F+ G ++S RV D S GYG+V+F + A A
Sbjct: 30 GVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATD-EEANSKGYGFVHFETEEAANNA 88
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+ +N LNGK + V + R R G N++IKN +D + L F +
Sbjct: 89 ISKVNGMLLNGKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKY 148
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
G + S KV D NG+++G+GFV F++ E A+KA+E+LNG + K +YVG +K
Sbjct: 149 GKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQKK 203
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ + FS FG+I SC+V D S+G GFV F T E A+ A+ +
Sbjct: 32 GNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISK 91
Query: 366 MNGKMVVSKPLYVA-LAQRKEDRR 388
+NG ++ K ++V RKE R
Sbjct: 92 VNGMLLNGKKVFVGRFIPRKERER 115
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G A +F T++Y+ + + D +L +F++ G+V S +V D ++ G+G+V+F +
Sbjct: 118 GDKARRF--TNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMVD-ENGKNRGFGFVSFED 174
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
+ A +A+E LN + GKP+ V
Sbjct: 175 PECAEKAVEELNGKDVGGKPLYV 197
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 178/288 (61%), Gaps = 32/288 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL +VT++ LY++F+ +G ++S+RVCRD++TRRSLGY Y+NF +A RAL+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+NF + G+PIR+M+SHRDP LR+SG GNIFIKNL+ +ID+KAL+DTFS FG+ILS KV
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFT 203
+ +G S+G+GFV F+ E+AQKAI +NGMLLND RK D
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLND---------RKVRSD--------- 171
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
Y +L+ S I+S + SK FGFV F + ++A +AV +
Sbjct: 172 --YPWSLA----------SLCPATLISSCFQVMTESSHSKGFGFVCFSSPEEATKAVTEM 219
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNM-KEAADKFQGANLYI 310
NG+ K YV AQ+K ER+ L +Q+ + + + FQ Y+
Sbjct: 220 NGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTSYL 267
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 144/284 (50%), Gaps = 48/284 (16%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS +V D+ +S GY ++ F A++A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ + + + RD + +S N+++KNL S + L +F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ V+ + G S+ FGFV+FE + A +A+ +NG +D++ ++
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRK---------------VRSD 171
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ ++ P I+SC + S S+G GFV
Sbjct: 172 YPWSLAS---------------------------LCPATLISSCFQVMTESSHSKGFGFV 204
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+
Sbjct: 205 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQY 248
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFEN 252
DT + +++YV +L TE L + F GTI S V RD +S + ++NF+
Sbjct: 2 DTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
DA RA++ +N + + + S R+ L+ + N++IKN
Sbjct: 62 PADAERALDTMNFEMIKGQPIRI----MWSHRDPGLR------------RSGMGNIFIKN 105
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
L++SID++ L FS FGSI S KV+ + G SRG GFV F T E A +A+ MNG ++
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLL 163
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 33/192 (17%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +LE ++ + LYD F+ G ++S +V + R G+G+V+F + A +A
Sbjct: 97 GMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKA 154
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ +N LN + +R Y SL + I SC
Sbjct: 155 INTMNGMLLNDRKVRSDYPWSLASLCPATL--------------------------ISSC 188
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER K+
Sbjct: 189 FQVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER-----KAI 243
Query: 202 FTNVYVKNLSES 213
TN Y + LS S
Sbjct: 244 LTNQYRRRLSRS 255
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALL 364
++LY+ +L + + L ++FSP G+I S +V RD + S G ++ F P +A RAL
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN +M+ +P+ + + R R
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLR 94
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 235/405 (58%), Gaps = 19/405 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+ L + +R+ RDPS R+SG NI +K L K++D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
D G+S+GY + F+ EESA A+ +++GM ++ + + V + + Q RD + +FTN
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERY-QAQHRDELLK--QFTN 184
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEAL 263
+YVKNL + T+E L+ F +YG ++SA V G +S+ G+V F+ +DAARAVE L
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEEL 244
Query: 264 NGKKFDDKEWYVGKA------QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
NG KE + KA + RE + + Q + A + NLY+K DD++
Sbjct: 245 NG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTV 299
Query: 318 DDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KP 375
E+L++LF +G S VM D +G+SR GFV+ AS+A+ E+NG +S +P
Sbjct: 300 TSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRP 359
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
L+V A RK+ RR L+ + Q R V P M PP ++
Sbjct: 360 LFVTYALRKDARRQNLEERSKQFR-VRQNPMGGPGMGAMPPIGFM 403
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNFSNAQEAARAL 82
T+LYV +L+ VTD +L F + G+V S +V RDL +S G GYV F ++AARA+
Sbjct: 183 TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAV 241
Query: 83 EMLNFTPLN----GKPIRV-------------MYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
E LN G P+ V R+ + + S N+++K D +
Sbjct: 242 EELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTS 301
Query: 126 KALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNG-MLLNDKQVY 183
+ L + F +G +S V D G S+ +GFV ++ +A +AI++LNG L+ + ++
Sbjct: 302 ERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLF 361
Query: 184 VGHFLRKQER 193
V + LRK R
Sbjct: 362 VTYALRKDAR 371
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 234/400 (58%), Gaps = 9/400 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+ L + +R+ RDPS R+SG NI +K L K++D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
D G+S+GY + F+ EESA A+ +++GM ++ + + V + + Q RD + +FTN
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERY-QAQHRDELLK--QFTN 184
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEAL 263
+YVKNL + T+E L+ F +YG ++SA V G +S+ G+V F+ +DAARAVE L
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEEL 244
Query: 264 NGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
NGK+ + K + RE + + Q + A + NLY+K DD++ E+L
Sbjct: 245 NGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERL 304
Query: 323 KQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYVAL 380
++LF +G S VM D +G+SR GFV+ AS+A+ E+NG +S +PL+V
Sbjct: 305 EELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTY 364
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
A RK+ RR L+ + Q R V P M PP ++
Sbjct: 365 ALRKDARRQNLEERSKQFR-VRQNPMGGPGMGAMPPIGFM 403
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNFSNAQEAARAL 82
T+LYV +L+ VTD +L F + G+V S +V RDL +S G GYV F ++AARA+
Sbjct: 183 TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAVQSEAGLGYVAFQKHEDAARAV 241
Query: 83 EMLNFTPLN----GKPIRV-------------MYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
E LN G P+ V R+ + + S N+++K D +
Sbjct: 242 EELNGKECEISKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTS 301
Query: 126 KALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNG-MLLNDKQVY 183
+ L + F +G +S V D G S+ +GFV ++ +A +AI++LNG L+ + ++
Sbjct: 302 ERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLF 361
Query: 184 VGHFLRKQER 193
V + LRK R
Sbjct: 362 VTYALRKDAR 371
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/146 (79%), Positives = 124/146 (84%), Gaps = 5/146 (3%)
Query: 2 AQVQAQGQNV-----NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC 56
AQVQ Q Q + GA NQF TTSLYVGDLE NV D QLYDLFNQMG VVSVRVC
Sbjct: 3 AQVQVQPQGPGPAPNSAAGAGGNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVC 62
Query: 57 RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFI 116
RDLSTRRSLGYGYVN+SN Q+AARAL++LNFTPLNGKP+R+MYSH DPS+RKSG GNIFI
Sbjct: 63 RDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPLRIMYSHCDPSIRKSGTGNIFI 122
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCK 142
KNLDK IDHKALHDTFSAFGNILSCK
Sbjct: 123 KNLDKGIDHKALHDTFSAFGNILSCK 148
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
T++YV +L + + L F + G + S V RD +S +G+VN+ N DAARA++
Sbjct: 30 TSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 89
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + K + + + K N++IKNLD ID +
Sbjct: 90 VLNFTPLNGKPLRI----------------MYSHCDPSIRKSGTGNIFIKNLDKGIDHKA 133
Query: 322 LKQLFSPFGSITSCK 336
L FS FG+I SCK
Sbjct: 134 LHDTFSAFGNILSCK 148
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKL 172
+++ +L+ ++ L+D F+ G ++S +V DL+ + S GYG+V + N + A +A++ L
Sbjct: 32 LYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVL 91
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N LN K + + + D I KS N+++KNL + + L +F +G I S
Sbjct: 92 NFTPLNGKPLRIMY----SHCDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSC 147
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG-ISRGSGFVAFSTPE 357
++F +LY+ +L+ +++D +L LF+ G++ S +V RD S S G G+V +S P+
Sbjct: 23 GGNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQ 82
Query: 358 EASRALLEMNGKMVVSKPLYV 378
+A+RAL +N + KPL +
Sbjct: 83 DAARALDVLNFTPLNGKPLRI 103
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 151/405 (37%), Positives = 235/405 (58%), Gaps = 19/405 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S++VG L+ ++ + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 9 SIWVGGLDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+ L + +R+ RDPS R+SG NI +K L K++D AL + FS FG + + +A
Sbjct: 69 AG-SKLGSRYLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTYALKEMFSKFGRLTAIGLA 127
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
D G+S+GY + F+ EESA A+ +++GM ++ + + V + + Q RD + +FTN
Sbjct: 128 CDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERY-QAQHRDELLK--QFTN 184
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEAL 263
+YVKNL + T+E L+ F +YG ++SA V G +S+ G+V F+ ++AARAVE L
Sbjct: 185 LYVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHENAARAVEEL 244
Query: 264 NGKKFDDKEWYVGKA------QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
NG KE + KA + RE + + Q + A + NLY+K DD++
Sbjct: 245 NG-----KECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTV 299
Query: 318 DDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KP 375
E+L++LF +G S VM D +G+SR GFV+ AS+A+ E+NG +S +P
Sbjct: 300 TSERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRP 359
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
L+V A RK+ RR L+ + Q R V P M PP ++
Sbjct: 360 LFVTYALRKDARRQNLEERSKQFR-VRQNPMGGPGMGAMPPIGFM 403
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNFSNAQEAARAL 82
T+LYV +L+ VTD +L F + G+V S +V RDL +S G GYV F + AARA+
Sbjct: 183 TNLYVKNLDPAVTDEKLRAFFAKYGEVSSAKV-RDLGAAQSEAGLGYVAFQKHENAARAV 241
Query: 83 EMLNFTPLN----GKPIRV-------------MYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
E LN G P+ V R+ + + S N+++K D +
Sbjct: 242 EELNGKECEIAKAGSPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTS 301
Query: 126 KALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNG-MLLNDKQVY 183
+ L + F +G +S V D G S+ +GFV ++ +A +AI++LNG L+ + ++
Sbjct: 302 ERLEELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLF 361
Query: 184 VGHFLRKQER 193
V + LRK R
Sbjct: 362 VTYALRKDAR 371
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 218/382 (57%), Gaps = 23/382 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L +D AL + FS +G + +
Sbjct: 67 LDQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIIVKKLPPTVDTYALKEMFSKYGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ATD G+S+GY + ++ EESA A+ +LNG+ ++D + V R Q E +
Sbjct: 126 GLATDEKGESRGYARISYEKEESAVDAVRELNGVSIDDCAITVE---RYQPHHREEQLKQ 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAV 260
+TN+YVKNL S +E L++ F +G +TSA V RD G+ FG+V + + AA+AV
Sbjct: 183 YTNLYVKNLDPSVDDEKLKEVFSPFGEVTSAKV-RDLAGRPTVGFGYVAYATHEAAAKAV 241
Query: 261 EALNGKKFDDKEWYVGKAQKK--------SERELELKHQFEQNMKEAADKFQGANLYIKN 312
E L DDKE + K K E + + + ++ K+ NLY+KN
Sbjct: 242 EEL-----DDKESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHSKY--PNLYVKN 294
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
DD++ E+LK LF PFG S VM D + +SR GFV+F A++A+ E++G
Sbjct: 295 FDDTVTSERLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQELHGSTA 354
Query: 372 V-SKPLYVALAQRKEDRRARLQ 392
+ +PL+V+ A RK+ RR L+
Sbjct: 355 LGPRPLFVSYALRKDARRQTLE 376
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 190/336 (56%), Gaps = 53/336 (15%)
Query: 8 GQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY 67
GQN G + + SLYVGDL +V +S L++ F+ G V+S+RVCRD +TR SLGY
Sbjct: 21 GQNQTG-----SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGY 75
Query: 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAI---- 123
YVNF +A RA++ +NF L+GKP+R+M+S RDP++R+SGAGNIFIKNLDK
Sbjct: 76 AYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKF 135
Query: 124 --------------------------DH---KALHDTFSAFGNILSCKVATDLNGQSKGY 154
DH + L F+ FGNI SC+V T + G+SKG+
Sbjct: 136 QPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGF 194
Query: 155 GFVQFDNEESAQKAIEKLNGMLL--NDKQVYVGHFLRKQERDTEINKS------------ 200
GFV F N E A+ A++ L+ + D +++V +K ER E+ K
Sbjct: 195 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKY 254
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+ N+YVKNL E+ ++ L+K F YG ITSA VM D +G+SK FGFV FE ++A AV
Sbjct: 255 QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAV 314
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+N K K YV AQ+K +R +L Q+ Q +
Sbjct: 315 TEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 350
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 193/317 (60%), Gaps = 33/317 (10%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L ++ L + FSA G +LS +V D S GY +V F A++A++
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 172 LNGMLLNDK---------------------------QVYVGHFLRKQERDTEINKS--KF 202
+N L+ K +V+VG F + +R+ E+ ++ +F
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQF 152
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN + +E L+K F ++G ITS VM +GKSK FGFV F N ++A AV+A
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQA 211
Query: 263 LNGKKFD--DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
L+ + D + +V +AQKKSER ELK + EQ+ E K+QG NLY+KNLD+++DD+
Sbjct: 212 LHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDD 271
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
LK+ F +G+ITS KVM D +G S+G GFV F PEEA+ A+ EMN KMV SKPLYVA+
Sbjct: 272 GLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAI 331
Query: 381 AQRKEDRRARLQAQFAQ 397
AQRKEDRRA+L +Q+ Q
Sbjct: 332 AQRKEDRRAQLASQYMQ 348
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 225/423 (53%), Gaps = 33/423 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L +D AL + FS FG + +
Sbjct: 67 LDQAGVK-LGTKHIRIAKIQRDPSKRRSGVTNIVVKKLPSTVDTYALKEMFSKFGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ATD G+S+GY + ++ EESA +A+ +LNG+ ++D + V R Q E +
Sbjct: 126 GLATDEKGESRGYARISYEKEESAVEAVRELNGVSIDDCSITVE---RYQPHHREEQLKQ 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+TN+YVKNL S +E L++ F ++G +TSA V G+ S F +V + + AA+AVE
Sbjct: 183 YTNLYVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVE 242
Query: 262 ALNGKKFD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
L+ K KE + RE + + + + NLY+KN DD++ E
Sbjct: 243 ELDEKSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSE 302
Query: 321 KLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYV 378
KLK+LF FG S VM D + +SR GFV+F AS+A+ E++G + +PL+V
Sbjct: 303 KLKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQELHGSTALGPRPLFV 362
Query: 379 ALAQRKEDRRARLQ-----------------------AQFAQMRPVAMASTVA---PRMP 412
A RK+ RR L+ Q M P M + + PRMP
Sbjct: 363 TYALRKDARRQTLEDIRNKQPRMRQPPMGGLMSGMMAPQLGFMNPPTMFNGLPFMNPRMP 422
Query: 413 MYP 415
M P
Sbjct: 423 MMP 425
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 217/379 (57%), Gaps = 17/379 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L ++D AL + FS +G + +
Sbjct: 67 LDQAGVK-LGSKHIRIAKIQRDPSKRRSGVTNIVVKKLPPSVDTYALKEMFSKYGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+AT+ NG+S+GY + ++ EESA +A++++NGM+++D + V R Q E +
Sbjct: 126 GLATNENGESRGYARISYEKEESAIQAVQEVNGMVIDDCAITVE---RYQPHHREEQLKQ 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKNL S +E L++ F +G +TSA V G ++ F +V + + AA+AVE
Sbjct: 183 FTNLYVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVE 242
Query: 262 ALNGKKFDDKEWYVGKAQKK------SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
L D+KE + K K R+ + + + + NLY+KN DD
Sbjct: 243 EL-----DEKESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYVKNFDD 297
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV-S 373
++ E+LK+LF G S VM D + +SR GFV+F ASRA+ E++G +
Sbjct: 298 TVTSERLKELFERCGETVSVSVMMDRATRVSRCFGFVSFKEQSAASRAIQELHGSTALGP 357
Query: 374 KPLYVALAQRKEDRRARLQ 392
+PL+V A RK+ RR L+
Sbjct: 358 RPLFVTYALRKDARRQTLE 376
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 199/334 (59%), Gaps = 34/334 (10%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+ RDP+LR SG GNIF+KNL +D + L F FG ILSCKV +D G+S+GYGFV
Sbjct: 1 MWQQRDPALRYSGNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQ--------VYVGHFLRKQERDTEINKSKFTNVYVKN 209
F ++ +A+ AIE +NG DK+ +YV +F+R+ R + + FTNVY+K
Sbjct: 61 HFKDDTAAKNAIESMNG----DKEHADAAKAALYVANFIRRNARLAAL-VANFTNVYIKQ 115
Query: 210 LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269
L + ++ ++K F ++G ITSA +D +G++ F F NFE DDA +A+EA + + +
Sbjct: 116 LLPTVNKDTIEKFFSKFGGITSAATCKDKNGRA--FAFCNFEKHDDAVKAIEAFHDQVIE 173
Query: 270 D-----KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
++ YV +AQ +SER + L+ ++ Q G NLY++N D ++ L
Sbjct: 174 GVTPPGEKLYVQRAQPRSERLIALRQKYMQCQS------LGNNLYVRNFDVEFSEKDLHV 227
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
LF +G+I SC+VM D +G SRG GFV+F ++A+ AL EMNG+M+ KPL V +AQR+
Sbjct: 228 LFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRR 287
Query: 385 EDRRARLQAQFAQ--------MRPVAMASTVAPR 410
+ R L+ QF Q MRP+++ P+
Sbjct: 288 DQRFMMLRVQFQQRMQMMLRHMRPMSLGGKNFPQ 321
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 21/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ V +L +F + G+++S +V D RS GYG+V+F + A A
Sbjct: 13 GNGNIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSD-EGGRSRGYGFVHFKDDTAAKNA 71
Query: 82 LEMLNFTPLNGKPIRVM-----YSHRDPSLRKSGAG--NIFIKNLDKAIDHKALHDTFSA 134
+E +N + + + R+ L A N++IK L ++ + FS
Sbjct: 72 IESMNGDKEHADAAKAALYVANFIRRNARLAALVANFTNVYIKQLLPTVNKDTIEKFFSK 131
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK-----LNGMLLNDKQVYVGHFLR 189
FG I S D NG + + F F+ + A KAIE + G+ +++YV
Sbjct: 132 FGGITSAATCKDKNG--RAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGEKLYVQRAQP 189
Query: 190 KQERDTEIN------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
+ ER + +S N+YV+N +E+DL F EYGTI S VM D +G S+
Sbjct: 190 RSERLIALRQKYMQCQSLGNNLYVRNFDVEFSEKDLHVLFEEYGTIRSCRVMTDANGNSR 249
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
FGFV+FEN+D A A+ +NG+ + K V AQ++ +R + L+ QF+Q M+
Sbjct: 250 GFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRVQFQQRMQ 303
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 233/405 (57%), Gaps = 19/405 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S++VG L+ + + +LYD F ++G V SVRVC D +T++SLGYGYVNF + +A +AL+
Sbjct: 9 SIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALDQ 68
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
L + +R+ RDPS R+SG NI +K L K++D AL + F +G + + +A
Sbjct: 69 AG-AKLGTRFLRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGKYGRLTAIGLA 127
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
D G+S+GY + F+ EESA A+++++GM ++ + + V + + Q RD + +FTN
Sbjct: 128 CDERGESRGYARISFEREESAVDAVKEMDGMEMDGQAIVVERY-QAQHRDEML--KQFTN 184
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEAL 263
+YVKNL + T+ L+ F +YG ++SA V GD +S+ FG+V FE +DAA+AVE L
Sbjct: 185 LYVKNLEPTVTDSKLRAFFAKYGEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAAKAVEEL 244
Query: 264 NGKKFDDKEWYVGKA------QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
NG KE + KA + RE + + Q + A + NLY+K DD++
Sbjct: 245 NG-----KECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTV 299
Query: 318 DDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KP 375
E+L++LF +G S VM D +G+SR GFV+ AS A+ ++NG +S +P
Sbjct: 300 TSERLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLSPRP 359
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWI 420
L+V A RK+ RR L+ + Q R + P M PP ++
Sbjct: 360 LFVTYALRKDARRQNLEERSKQFR-MRQNPMNGPNMGGMPPMGFM 403
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNFSNAQEAARAL 82
T+LYV +LE VTDS+L F + G+V S +V RDL +S +G+GYV F ++AA+A+
Sbjct: 183 TNLYVKNLEPTVTDSKLRAFFAKYGEVSSAKV-RDLGDAQSEVGFGYVAFEKHEDAAKAV 241
Query: 83 EMLNFTPLN----GKPIRV-------------MYSHRDPSLRKSGAGNIFIKNLDKAIDH 125
E LN G P+ V R+ + + S N+++K D +
Sbjct: 242 EELNGKECEIAKAGAPLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTS 301
Query: 126 KALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNG-MLLNDKQVY 183
+ L + F +G +S V TD + G S+ +GFV ++ +A AI+ LNG L+ + ++
Sbjct: 302 ERLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAIQDLNGSTFLSPRPLF 361
Query: 184 VGHFLRKQER 193
V + LRK R
Sbjct: 362 VTYALRKDAR 371
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 241/478 (50%), Gaps = 88/478 (18%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL V +++L++LF+ +G V+SVRVCRD T SLGYGYVNF+ A++A A+
Sbjct: 248 TSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMG 307
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LNF L+G+ IR+M RDP R+S NI + L L DTF FG ILSCK
Sbjct: 308 QLNFHDLHGRHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVHLRDTFEQFGKILSCKA 367
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL-NDKQVYVGHF-LRKQ-ERDTEINKS 200
D +G+ +G+GFV F++ + A++AI + NG D+++ V F RKQ E++ E
Sbjct: 368 VLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAPFKPRKQREQEQEERTK 427
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV----MRDGDGKSKCFGFVNFENSDDA 256
FTNVYVK+L EE+L K F YG ITS + ++D + + +GFVNF +++ A
Sbjct: 428 NFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTE---RPYGFVNFADTEAA 484
Query: 257 ARAVEA----------LNGKKFDDK---EWYVGKAQKKSERELELKHQ------------ 291
+ VE ++G F++ E +V ++ + E+E H
Sbjct: 485 QKCVEEGEMHQRDIFYVDGMAFEEGKKVEDFVKTVEECAGSEVERHHLQVADGKLSGFIL 544
Query: 292 ---------------FEQNMKEAADKFQGANLY--------------------------- 309
+ M+ A D A LY
Sbjct: 545 FKEHGEETVDKAMTGLPEKMEAATDHISKAKLYVQRAQTKQERIRRLRRRLQERRRELRQ 604
Query: 310 ------IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
+KN ++++ +E L++ F G + KVMRD G+SR GFV F+T EEA A+
Sbjct: 605 RGGNLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAI 664
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPM--YPPGAW 419
+ N + + +P+YVA +++ R + Q Q Q + V M PRMPM + PG +
Sbjct: 665 AKKNRQTLQDRPIYVAFHLTRQE-RCKQQPQHPQ-QGVYMYPQ-CPRMPMGAFGPGYY 719
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVAFSTPEEASR 361
G +LY+ +L +++ +L LFS GS+ S +V RD I+ GS G+V F+ E+A
Sbjct: 247 GTSLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRD--QITHGSLGYGYVNFNKAEDAEA 304
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
A+ ++N + + + + +R +R
Sbjct: 305 AMGQLNFHDLHGRHIRIMKVERDPKKR 331
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/204 (53%), Positives = 156/204 (76%), Gaps = 2/204 (0%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVK 208
L ++ERD+++ ++K +TN+YVK
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVK 224
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 26/224 (11%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQ 166
++ + ++++ +L+ ++ L+D FS G++ S +V D + S GY +V F++ E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQ--ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
KAIE+LN + G R +RD + K N+++KNL + L +F
Sbjct: 94 KAIEQLNYTPIK------GRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFS 147
Query: 225 EYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+G I S+ + D +GKSK FGFV+FE A A++ALNG + +E YV + ER
Sbjct: 148 VFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER 207
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
+ +L+ K NLY+K +L +L P
Sbjct: 208 DSQLEET----------KAHYTNLYVKT-------HQLPKLLRP 234
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEAL 263
+YV +L S +E L F G+++S V RD K+ + +VNF + + +A+E L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + +Q R+ L+ K N++IKNL ID++ L
Sbjct: 100 NYTPIKGRLCRIMWSQ----RDPSLR------------KKGSGNIFIKNLHPDIDNKALY 143
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FG I S K+ D +G S+G GFV F A A+ +NG ++ + +YVA
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLS 203
Query: 384 KEDRRARLQAQFAQMRPVAMASTVAPRM 411
+++R ++L+ A + + + P++
Sbjct: 204 RKERDSQLEETKAHYTNLYVKTHQLPKL 231
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 228/431 (52%), Gaps = 49/431 (11%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
+ S++VG L+ N+ + +LYD F ++G V SVRVC D T++SLGYGYVNF N +A +A
Sbjct: 7 ASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKA 66
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
L+ L K IR+ RDPS R+SG NI +K L +D AL + FS +G + +
Sbjct: 67 LDQAGVK-LGSKHIRIARIQRDPSKRRSGVTNIVVKKLPPTVDTYALKEMFSKYGRLTAI 125
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+AT+ G+S+GY + ++ EESA +A++ +NGM ++D + V R Q E
Sbjct: 126 GLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITVE---RYQPHHREEQLKL 182
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAV 260
+TN+YVKNL S +E L++ F YG +TSA V RD GK S F +V + + A +AV
Sbjct: 183 YTNLYVKNLDPSVGDEKLKEVFSAYGEVTSAKV-RDLGGKMSVGFAYVAYATHEAAVKAV 241
Query: 261 EALNGKKFDDKEWYVGKAQKK--------SERELELKHQFEQNMKEAADKFQGANLYIKN 312
E L DDKE + K K E + + + ++ K+ NLY+KN
Sbjct: 242 EEL-----DDKENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKY--PNLYVKN 294
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
DD++ E+LK+LF FG S VM D + +SR GFV+F ASRA+ E++G
Sbjct: 295 FDDTVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHGSTA 354
Query: 372 V-SKPLYVALAQRKEDRRARLQ-----------------------AQFAQMRPVAMASTV 407
+ +PL+V A RK+ RR L+ Q M P AM + V
Sbjct: 355 LGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQTPMGGLMGGMMGPQLGFMNPPAMFNGV 414
Query: 408 A---PRMPMYP 415
RMPM P
Sbjct: 415 PFMNTRMPMMP 425
>gi|392355792|ref|XP_228576.4| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 456
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Query: 13 GGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG + N F T SLYVGDL VT+S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 246 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVN 305
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ +A RALE +NF +NG+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 306 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 365
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ LNGM LN ++++VG F +
Sbjct: 366 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 424
Query: 192 ERDTE 196
ER+ E
Sbjct: 425 EREAE 429
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 319 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 374
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ALNG + ++ +VG+ + ERE E
Sbjct: 375 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 429
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 259 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 318
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 319 MNFDVINGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 362
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+FS FG+I SCKV D G +G GFV F E A RA+ +NG + + ++V +
Sbjct: 363 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 421
Query: 383 RKEDRRA 389
++R A
Sbjct: 422 SHKEREA 428
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEA 359
F A+LY+ +L + + L + FSP G I S ++ RD ++R G +V + P +A
Sbjct: 255 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRD--KVTRRSLGYAYVNYQQPVDA 312
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL MN ++ +P+ + +QR R
Sbjct: 313 KRALETMNFDVINGRPVRIMWSQRDPSLR 341
>gi|293351002|ref|XP_001054954.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Rattus norvegicus]
Length = 438
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Query: 13 GGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG + N F T SLYVGDL VT+S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 228 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVN 287
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ +A RALE +NF +NG+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 288 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 347
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ LNGM LN ++++VG F +
Sbjct: 348 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 406
Query: 192 ERDTE 196
ER+ E
Sbjct: 407 EREAE 411
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 301 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 356
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ALNG + ++ +VG+ + ERE E
Sbjct: 357 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 411
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 241 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 300
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 301 MNFDVINGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 344
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+FS FG+I SCKV D G +G GFV F E A RA+ +NG + + ++V +
Sbjct: 345 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 403
Query: 383 RKEDRRA 389
++R A
Sbjct: 404 SHKEREA 410
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEA 359
F A+LY+ +L + + L + FSP G I S ++ RD ++R G +V + P +A
Sbjct: 237 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRD--KVTRRSLGYAYVNYQQPVDA 294
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL MN ++ +P+ + +QR R
Sbjct: 295 KRALETMNFDVINGRPVRIMWSQRDPSLR 323
>gi|441675859|ref|XP_003280927.2| PREDICTED: uncharacterized protein LOC100588478 [Nomascus
leucogenys]
Length = 485
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 145/209 (69%), Gaps = 3/209 (1%)
Query: 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
+ GG F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YV
Sbjct: 274 IRGGYEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYV 333
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
N+ +A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 334 NYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYN 393
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F
Sbjct: 394 IFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSH 452
Query: 191 QERDTEIN--KSKFTNVYVKNLSESTTEE 217
+ER+ E + T+ VK+ E T EE
Sbjct: 453 KEREAERGAWARQSTSADVKDFEEDTDEE 481
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 288 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 347
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 348 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 403
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 404 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 458
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAV 260
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+
Sbjct: 286 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 345
Query: 261 EALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
E LN FD G+ + S+R+ L+ K N++IKNL +ID
Sbjct: 346 ETLN---FD---VIKGRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTID 387
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 388 NKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFV 446
Query: 379 ALAQRKEDRRA 389
+ ++R A
Sbjct: 447 GRFKSHKEREA 457
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E F A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 279 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 336
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 337 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 370
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 135/166 (81%), Gaps = 1/166 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 93/171 (54%), Gaps = 22/171 (12%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD + GK + S+R+ L+ K N++IKNLD SID++
Sbjct: 72 MN---FDVIK---GKPVRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNK 113
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG ++
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 163
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 179/273 (65%), Gaps = 6/273 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL V +S L +F+++G+V S+++CRD ST S GY YVNF N ++A +A ++
Sbjct: 36 SLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKL 95
Query: 85 LNFTP---LNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
LN+ L+ KP+R+M+ +D SLR SG GN+FIKN+ + D+K+L FS FG ILSC
Sbjct: 96 LNYYTDETLHYKPLRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKILSC 155
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-KS 200
K+A D N +S GYGFV + E+ ++KAIEK+N ++ ++++VG F+ K +R+ N K
Sbjct: 156 KIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRNNRNNSKL 215
Query: 201 KFTNVYVKN-LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
+FTNVY+KN L ++ E ++ F +G ITS + + + F FVNFEN +DA A
Sbjct: 216 RFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPKANEA-PLGFAFVNFENPEDAEDA 274
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ +NGKK K YVGKA+ + ER+ L +F
Sbjct: 275 IFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 144/286 (50%), Gaps = 19/286 (6%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L ++ +L FS G + S ++ D + G S+GY +V F N + AQKA + L
Sbjct: 37 LYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKLL 96
Query: 173 NGMLLNDKQVYVGHFLRKQ--ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
N D+ ++ LR ++D + S N+++KN+ + L K F ++G I
Sbjct: 97 N--YYTDETLHYKP-LRIMWVQKDKSLRFSGTGNLFIKNIPRRYDNKSLSKLFSQFGKIL 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S + D + +S +GFV+++ D+ +A+E +N D ++ +VG K +R
Sbjct: 154 SCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFISKVKRN----- 208
Query: 291 QFEQNMKEAADKFQGANLYIKN-LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
K + N+YIKN L + ++ +K LF FG ITS + + G
Sbjct: 209 ------NRNNSKLRFTNVYIKNILFQNCNEIYIKDLFEIFGPITSIFIPKANEA-PLGFA 261
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
FV F PE+A A+ +MNGK + K LYV A+ + +R+ RL +F
Sbjct: 262 FVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIERQRRLAKKF 307
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 12/186 (6%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
GT +L++ ++ + L LF+Q G+++S ++ D +RS+GYG+V++ +++ +A
Sbjct: 124 GTGNLFIKNIPRRYDNKSLSKLFSQFGKILSCKIALD-ENKRSMGYGFVHYKEEKDSKKA 182
Query: 82 LEMLNFTPLNGKPI-------RVMYSHRDPSLRKSGAGNIFIKN-LDKAIDHKALHDTFS 133
+E +N ++G+ I +V ++R+ S K N++IKN L + + + D F
Sbjct: 183 IEKMNNCFIDGEKIFVGPFISKVKRNNRNNS--KLRFTNVYIKNILFQNCNEIYIKDLFE 240
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + N G+ FV F+N E A+ AI K+NG + K +YVG + ER
Sbjct: 241 IFGPITSIFIPKA-NEAPLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYVGKAETRIER 299
Query: 194 DTEINK 199
+ K
Sbjct: 300 QRRLAK 305
>gi|395754119|ref|XP_002831853.2| PREDICTED: uncharacterized protein LOC100437512 [Pongo abelii]
Length = 528
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 327 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 386
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 387 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 447 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 506 ARQSTSADVKDFEEDTDEE 524
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 391 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 446
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 447 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 505
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDE 320
Q+ +AD +K+ ++ D+E
Sbjct: 506 ARQST--SAD--------VKDFEEDTDEE 524
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 331 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 390
Query: 263 LNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 391 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 432
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 433 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGR 491
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 492 FKSHKEREA 500
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E F A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 322 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 379
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 380 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 413
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/190 (59%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E +DA +AVE
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEK
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALA
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 382 QRKEDRRARL 391
QRKE+R+A L
Sbjct: 180 QRKEERKAHL 189
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 117/189 (61%), Gaps = 15/189 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN + +D ++L + FS FG LS KV D NG+SKG+GFV ++ E A KA+E++
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++ +E L
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 121
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K YV AQ
Sbjct: 122 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 180
Query: 280 KKSERELEL 288
+K ER+ L
Sbjct: 181 RKEERKAHL 189
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ + V D L +LF+Q G+ +SV+V RD + +S G+G+V++ ++A +A+E
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVE 60
Query: 84 MLNFTPLNGKPIRVMYSH----RDPSLRKS------------GAGNIFIKNLDKAIDHKA 127
+N ++GK I V + R L++ N++IKNLD ID +
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 120
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 121 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 179
Query: 188 LRKQERDTEI 197
RK+ER +
Sbjct: 180 QRKEERKAHL 189
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 68/94 (72%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV++ E+A++A+ E
Sbjct: 2 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 61
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
MNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 62 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 95
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 332 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 391
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 392 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 452 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 511 ARQSTSADVKDFEEDTDEE 529
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 16/209 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 336 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 395
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 396 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 451
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 452 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 510
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDE 320
Q+ +AD +K+ ++ D+E
Sbjct: 511 ARQST--SAD--------VKDFEEDTDEE 529
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 19/198 (9%)
Query: 194 DTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFE 251
D E N + ++YV +L TE L + F G I S + RD +S + +VN++
Sbjct: 325 DCEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQ 384
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
DA RA+E LN + + S+R+ L+ K N++IK
Sbjct: 385 QPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIK 428
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NL +ID++ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG +
Sbjct: 429 NLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFL 487
Query: 372 VSKPLYVALAQRKEDRRA 389
+ ++V + ++R A
Sbjct: 488 NYRKIFVGRFKSHKEREA 505
>gi|296470851|tpg|DAA12966.1| TPA: PABPC1L2B protein-like [Bos taurus]
Length = 489
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 146/209 (69%), Gaps = 4/209 (1%)
Query: 12 NGGGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV 70
G G+ N F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YV
Sbjct: 278 TGRGSERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYV 337
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
N+ +A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 338 NYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYN 397
Query: 131 TFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F
Sbjct: 398 IFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSH 456
Query: 191 QERDTEIN--KSKFTNVYVKNLSESTTEE 217
+ER+ E + T+ VK+ E T EE
Sbjct: 457 KEREAERGAWARQSTSADVKDFEEDTDEE 485
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%)
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQ 158
S R+P+ + ++++ +L + L++ FS G ILS ++ D + +S GY +V
Sbjct: 282 SERNPNFPMA---SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN 338
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ A++A+E LN ++ + V + +RD + KS NV++KNL ++ +
Sbjct: 339 YQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKA 394
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L F +G I S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+
Sbjct: 395 LYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRF 453
Query: 279 QKKSERELE 287
+ ERE E
Sbjct: 454 KSHKEREAE 462
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 19/199 (9%)
Query: 193 RDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
R +E N + ++YV +L TE L + F G I S + RD +S + +VN+
Sbjct: 280 RGSERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 339
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ DA RA+E LN + + S+R+ L+ K N++I
Sbjct: 340 QQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFI 383
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG
Sbjct: 384 KNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMF 442
Query: 371 VVSKPLYVALAQRKEDRRA 389
+ + ++V + ++R A
Sbjct: 443 LNYRKIFVGRFKSHKEREA 461
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
Query: 13 GGGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG + N F T SLYVGDL VT+S LY+ F+ G ++S+R+CRD TRRSLGY YVN
Sbjct: 19 GGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVN 78
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
+ +A RALE +NF +NG+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++
Sbjct: 79 YQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNI 138
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FSAFGNILSCKVA D G KGYGFV F +ESA++AI+ LNGM LN ++++VG F +
Sbjct: 139 FSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHK 197
Query: 192 ERDTE 196
ER+ E
Sbjct: 198 EREAE 202
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++N + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 92 MNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 147
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ALNG + ++ +VG+ + ERE E
Sbjct: 148 CKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE 202
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N + + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 92 MNFDVINGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 135
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+FS FG+I SCKV D G +G GFV F E A RA+ +NG + + ++V +
Sbjct: 136 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 194
Query: 383 RKEDRRA 389
++R A
Sbjct: 195 SHKEREA 201
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361
F A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A R
Sbjct: 28 FPTASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKR 87
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
AL MN ++ +P+ + +QR R
Sbjct: 88 ALETMNFDVINGRPVRIMWSQRDPSLR 114
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/197 (54%), Positives = 142/197 (72%), Gaps = 3/197 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL VT++ LY+ F+ G+++S+R+CRD TRRSLGY YVN+ +A RAL
Sbjct: 441 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 500
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FS FGNILSCK
Sbjct: 501 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 560
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 561 VACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWAR 619
Query: 201 KFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 620 QSTSADVKDFDEDTDEE 636
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 21/226 (9%)
Query: 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGY 154
R++ + DP ++++ +L + L++ FS G ILS ++ D + +S GY
Sbjct: 431 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 485
Query: 155 GFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
+V + A++A+E LN ++ + V + +RD + KS NV++KNL ++
Sbjct: 486 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 541
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
+ L F +G I S V D G K +GFV+F+ + A RA++ +NG + ++ +
Sbjct: 542 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 600
Query: 275 VGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
VG+ + ERE E A Q + +K+ D+ D+E
Sbjct: 601 VGRFKSHKEREAE----------RGAWARQSTSADVKDFDEDTDEE 636
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 443 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 502
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 503 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 544
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 545 ALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGR 603
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 604 FKSHKEREA 612
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GS 348
+ + + A+ A+LY+ +L + + L + FSP G I S ++ RD I+R G
Sbjct: 428 YTKRIISASPDPPTASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRD--KITRRSLGY 485
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+V + P +A RAL +N ++ +P+ + +QR R
Sbjct: 486 AYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 525
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 145/207 (70%), Gaps = 4/207 (1%)
Query: 14 GGANAN-QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG N F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+
Sbjct: 40 GGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 99
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ F
Sbjct: 100 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 159
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
SAFGNILSCKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +E
Sbjct: 160 SAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE 218
Query: 193 RDTEIN--KSKFTNVYVKNLSESTTEE 217
R+ E + T+ VK+ E T EE
Sbjct: 219 REAERGAWARQSTSADVKDFEEDTDEE 245
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 112 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 167
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 168 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 222
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 18/187 (9%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 52 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 111
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 112 LNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 155
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
+FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V +
Sbjct: 156 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 214
Query: 383 RKEDRRA 389
++R A
Sbjct: 215 SHKEREA 221
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356
E F A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P
Sbjct: 43 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQP 102
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A RAL +N ++ +P+ + +QR R
Sbjct: 103 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 134
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/124 (87%), Positives = 117/124 (94%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
EQ E ADKFQGANLY+KNLDDSIDD+KLKQLFS FGSITSCKVMRDP+GISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
F+TPEEASRA+LEMNGKMVVSKPL+VALAQRKEDRRARLQAQF+Q+RPVAMA +VA RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 413 MYPP 416
MYPP
Sbjct: 121 MYPP 124
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 62/97 (63%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K + N+Y+KNL +S ++ L++ F ++G+ITS VMRD +G S+ GFV F ++A+
Sbjct: 9 DKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEAS 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
RA+ +NGK K +V AQ+K +R L+ QF Q
Sbjct: 69 RAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
N+++KNLD +ID L FS FG+I SCKV D NG S+G GFV F E A +AI +
Sbjct: 14 ANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
+NG ++ K ++V RK++R + +++F+ + ++ S
Sbjct: 74 MNGKMVVSKPLFVALAQRKEDRRARL-QAQFSQIRPVAMAPSV 115
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A++F +LY+ +L+ ++ D +L LF+Q G + S +V RD S G G+V F+ +E
Sbjct: 8 ADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RA+ +N + KP+ V + R
Sbjct: 67 ASRAILEMNGKMVVSKPLFVALAQR 91
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 146/196 (74%), Gaps = 6/196 (3%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER
Sbjct: 123 GNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER-- 179
Query: 196 EINKSKFTNVYVKNLS 211
K+ TN Y++ ++
Sbjct: 180 ---KAHLTNQYMQRVA 192
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 18/197 (9%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAV 260
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ +N K + S+R+ L+ K N++IKNLD SID++
Sbjct: 70 DTMNFDVIKGKPIRI----MWSQRDPSLR------------KSGVGNVFIKNLDKSIDNK 113
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L FS FG+I SCKVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVAL
Sbjct: 114 ALYDTFSAFGNILSCKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVAL 172
Query: 381 AQRKEDRRARLQAQFAQ 397
AQRKE+R+A L Q+ Q
Sbjct: 173 AQRKEERKAHLTNQYMQ 189
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 103/185 (55%), Gaps = 6/185 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VM + DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q
Sbjct: 128 CKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 186
Query: 292 FEQNM 296
+ Q +
Sbjct: 187 YMQRV 191
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>gi|395863403|ref|XP_003803885.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Otolemur garnettii]
Length = 203
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 2 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 61
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 62 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 121
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 122 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 180
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 181 ARQSTSADVKDFEEDTDEE 199
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 5 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 64
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 65 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 120
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 121 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 176
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 6 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 65
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 66 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 107
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 108 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 166
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 167 FKSHKEREA 175
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361
F A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A R
Sbjct: 2 FPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 61
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRR 388
AL +N ++ +P+ + +QR R
Sbjct: 62 ALETLNFDVIKGRPVRIMWSQRDPSLR 88
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 142/199 (71%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A R
Sbjct: 92 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKR 151
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 152 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 270
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 271 ARQSTSADVKDFEEDTDEE 289
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 96 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 155
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 156 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 211
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 212 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 266
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 18/190 (9%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
+ ++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 93 QMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRA 152
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
+E LN + + S+R+ L+ K N++IKNL +ID+
Sbjct: 153 LETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 196
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 197 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 255
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 256 RFKSHKEREA 265
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356
E FQ A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P
Sbjct: 87 EGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQP 146
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A RAL +N ++ +P+ + +QR R
Sbjct: 147 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 178
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 131/257 (50%), Positives = 170/257 (66%), Gaps = 9/257 (3%)
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
MLL K+V+VG F + +R+ E+ ++ K+TNVYVKN + +E L+K F +YGTITS
Sbjct: 1 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 60
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKH 290
VM DGKSK FGFV F ++A AV+ALN + D + +V +AQKKSER ELK
Sbjct: 61 DVMTS-DGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKK 119
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ EQ+ E K+QG NLY+KNLD+S+DDE LK+ F FG+ITS KVM D +G S+G GF
Sbjct: 120 KHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGF 179
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR 410
V F PEEA+ A+ EMN KMV SKPLYVALAQRKEDRRA+L +Q+ Q T P
Sbjct: 180 VCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRLASMRMHTNVPG 239
Query: 411 MPMYP----PGAWIWLS 423
+YP PG +++
Sbjct: 240 GGLYPQQPQPGPGYYVA 256
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 20/192 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV + + L LF + G + S V S +S G+G+V F+ +EA A++
Sbjct: 31 TNVYVKNFGDHYNKESLEKLFAKYGTITSCDVM--TSDGKSKGFGFVAFAEPEEAEAAVQ 88
Query: 84 MLNFTPLNGKPIRVMY------------------SHRDPSLRKSGAGNIFIKNLDKAIDH 125
LN +P+ G +++ H+ ++K N+++KNLD+++D
Sbjct: 89 ALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 148
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+AL F +FGNI S KV TD NG+SKG+GFV F+ E A A+ ++N ++ K +YV
Sbjct: 149 EALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVA 208
Query: 186 HFLRKQERDTEI 197
RK++R ++
Sbjct: 209 LAQRKEDRRAQL 220
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/253 (50%), Positives = 173/253 (68%), Gaps = 5/253 (1%)
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
SAFGNILSCKV D NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +E
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 193 RDTEI---NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
R E+ +++ FTNV+VKN+ + +E L++ F EYG S V+RD GKSK FGFV
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+E + A +AV L+GK D K YVG+AQKK ER EL+ +FE+ + + G +Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
IKNLD++I+DEKLK+ FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 370 MVVSKPLYVALAQ 382
+V SKPL+V L Q
Sbjct: 239 VVGSKPLHVTLGQ 251
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 26/257 (10%)
Query: 47 MGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSH 101
G ++S +V C D ++ GY YV+F + A RA+ +N LN + + V
Sbjct: 3 FGNILSCKVVCDDNGSK---GYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 102 RDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQ 158
R +R ++ N+F+KN+ ID + L + F +G S KV D +G+SKG+GFV+
Sbjct: 60 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 119
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER------------DTEINKSKFTNVY 206
++ E+AQKA+ L+G ++ K +YVG +K ER E ++ +Y
Sbjct: 120 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 179
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
+KNL E+ +E L++ F +G+I+ A VM + G+ K FG V F + ++A +AV+ +NG+
Sbjct: 180 IKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGR 238
Query: 267 KFDDKEWYV--GKAQKK 281
K +V G+A+++
Sbjct: 239 VVGSKPLHVTLGQARRR 255
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 10/164 (6%)
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+G I S V+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER
Sbjct: 3 FGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERA 61
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
E++ + D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S
Sbjct: 62 AEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKS 112
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
+G GFV + T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 113 KGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 156
>gi|359081870|ref|XP_003588203.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|395862938|ref|XP_003803673.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Otolemur
garnettii]
Length = 200
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|291407697|ref|XP_002720156.1| PREDICTED: polyadenylate-binding protein 1-like [Oryctolagus
cuniculus]
gi|301792853|ref|XP_002931393.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Ailuropoda
melanoleuca]
gi|311276495|ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|335306198|ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus scrofa]
gi|281338845|gb|EFB14429.1| hypothetical protein PANDA_022442 [Ailuropoda melanoleuca]
Length = 200
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|194228035|ref|XP_001914759.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Equus
caballus]
Length = 200
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 140/195 (71%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ F G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + F P G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFRPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQR 383
+N ++ +P+ + +QR
Sbjct: 62 TLNFDVIKGRPVRIMWSQR 80
>gi|61175237|ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|109948285|ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens]
gi|402910552|ref|XP_003917938.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Papio anubis]
gi|426396426|ref|XP_004064444.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Gorilla gorilla
gorilla]
gi|74755614|sp|Q5JQF8.1|PAP1M_HUMAN RecName: Full=Polyadenylate-binding protein 1-like 2; AltName:
Full=RNA-binding motif protein 32; AltName:
Full=RNA-binding protein 32
gi|119619077|gb|EAW98671.1| hCG1811470 [Homo sapiens]
gi|187951483|gb|AAI36493.1| PABPC1L2A protein [Homo sapiens]
gi|261861056|dbj|BAI47050.1| poly(A) binding protein, cytoplasmic 1-like 2A [synthetic
construct]
gi|355704922|gb|EHH30847.1| RNA-binding protein 32 [Macaca mulatta]
gi|355767263|gb|EHH62597.1| RNA-binding protein 32 [Macaca fascicularis]
gi|380784435|gb|AFE64093.1| polyadenylate-binding protein 1-like 2 [Macaca mulatta]
Length = 200
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 132/173 (76%), Gaps = 1/173 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVGDL VT++ LY+ F+ G+++S+R+CRD TRRSLGY YVN+ +A RAL
Sbjct: 350 TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 409
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FS FGNILSCK
Sbjct: 410 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCK 469
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
VA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER++
Sbjct: 470 VACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKSHKERES 521
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 11/191 (5%)
Query: 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGY 154
R++ + DP ++++ +L + L++ FS G ILS ++ D + +S GY
Sbjct: 340 RIISASPDPP-----TASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGY 394
Query: 155 GFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
+V + A++A+E LN ++ + V + +RD + KS NV++KNL ++
Sbjct: 395 AYVNYQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTI 450
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
+ L F +G I S V D G K +GFV+F+ + A RA++ +NG + ++ +
Sbjct: 451 DNKALYNIFSTFGNILSCKVACDEKGP-KGYGFVHFQEQESAERAIDVMNGMFLNYRKIF 509
Query: 275 VGKAQKKSERE 285
VG+ + ERE
Sbjct: 510 VGRFKSHKERE 520
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 352 SLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 411
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 412 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 453
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 454 ALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGR 512
Query: 381 AQRKEDRRARLQAQF 395
+ ++R + Q
Sbjct: 513 FKSHKERESWSDPQL 527
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GS 348
+ + + A+ A+LY+ +L + + L + FSP G I S ++ RD I+R G
Sbjct: 337 YTKRIISASPDPPTASLYVGDLHPEVTEAMLYEKFSPAGRILSIRICRD--KITRRSLGY 394
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+V + P +A RAL +N ++ +P+ + +QR R
Sbjct: 395 AYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 434
>gi|426257244|ref|XP_004022242.1| PREDICTED: polyadenylate-binding protein 1-like 2 [Ovis aries]
Length = 200
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|119923699|ref|XP_599343.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|297493007|ref|XP_002700050.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|358420984|ref|XP_003584787.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like 2A [Bos
taurus]
gi|296470850|tpg|DAA12965.1| TPA: PABPC1L2B protein-like [Bos taurus]
gi|440892195|gb|ELR45496.1| Polyadenylate-binding protein 1-like 2 [Bos grunniens mutus]
Length = 200
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/195 (55%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ E T EE
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|444516866|gb|ELV11302.1| Polyadenylate-binding protein 1-like 2 [Tupaia chinensis]
Length = 200
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/195 (54%), Positives = 141/195 (72%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ VK+ + T EE
Sbjct: 182 TSADVKDFEDDTDEE 196
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE--- 173
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
A Q + +K+ +D D+E
Sbjct: 174 -------RGAWARQSTSADVKDFEDDTDEE 196
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/195 (54%), Positives = 140/195 (71%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E +
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 203 TNVYVKNLSESTTEE 217
T+ K+ E T EE
Sbjct: 182 TSADCKDFEEDTDEE 196
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I
Sbjct: 62 TLNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
S V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 118 SCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 141/199 (70%), Gaps = 3/199 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
F SLYVGDL VT++ LY+ F+ G ++S+ +CRD TRRSLGY YVN+ +A R
Sbjct: 42 FQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKR 101
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
ALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILS
Sbjct: 102 ALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 161
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-- 198
CKVA D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 162 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 220
Query: 199 KSKFTNVYVKNLSESTTEE 217
+ T+ VK+ E T EE
Sbjct: 221 ARQSTSADVKDFEEDTDEE 239
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS + D + +S GY +V + A++A+E
Sbjct: 46 SLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRALET 105
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 106 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 161
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++ +NG + ++ +VG+ + ERE E
Sbjct: 162 CKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 216
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 18/190 (9%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
+ ++YV +L TE L + F G I S + RD +S + +VN++ DA RA
Sbjct: 43 QMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQPVDAKRA 102
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
+E LN + + S+R+ L+ K N++IKNL +ID+
Sbjct: 103 LETLNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDN 146
Query: 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
+ L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 147 KALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVG 205
Query: 380 LAQRKEDRRA 389
+ ++R A
Sbjct: 206 RFKSHKEREA 215
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356
E FQ A+LY+ +L + + L + FSP G I S + RD + S G +V + P
Sbjct: 37 EGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQP 96
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A RAL +N ++ +P+ + +QR R
Sbjct: 97 VDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 128
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/396 (34%), Positives = 230/396 (58%), Gaps = 14/396 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
TT ++VGDL ++ +S L F + G+++ S V + T S + +V F+ ++AA+
Sbjct: 5 TTQIFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDS-SFAFVTFATHEQAAK 63
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDP-SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
A++ LN+T L+G+PIR+++ + ++ KSG G++FI LD++I+ LHD FS FG I+
Sbjct: 64 AMKNLNYTKLDGRPIRILWCDTETKAIIKSGRGSLFINGLDESIEVSQLHDAFSNFGEII 123
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
SCK+ +G+S+GYG++QF N E+A+KA +L +N K + + ++ RK R+ +
Sbjct: 124 SCKIPL-TDGKSRGYGYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRRNPD--- 179
Query: 200 SKFTNVYVKNLS--ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
FTNVY+K L + T+EDL+K F +G I + + +D +G SK FGF NF+ +DA
Sbjct: 180 EDFTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHEDAV 239
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE LNG++ V + K E+EL + + +++ A++ G NLY+K+ +
Sbjct: 240 KAVEGLNGQEMFGVTLQVNRLMSKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFSKDV 299
Query: 318 DDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRAL-LEMNGKMVVSKP 375
D++ ++ FS FG I K+ R P + S+G GFV + + E+A A+ + M ++ P
Sbjct: 300 TDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEMAMLERLHGDLP 359
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM 411
YV Q K R++ + RP A+ + M
Sbjct: 360 -YVGFFQTKAAHE-RVKVKNTHPRPSAVPAIAGNLM 393
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 26/284 (9%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G SL++ L+ ++ SQL+D F+ G+++S ++ L+ +S GYGY+ F N + A +A
Sbjct: 94 GRGSLFINGLDESIEVSQLHDAFSNFGEIISCKI--PLTDGKSRGYGYIQFRNPENAEKA 151
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAF 135
L +NGKPI++ S R+P N++IK L D+ + L F F
Sbjct: 152 KLELADASINGKPIKIDNYNRKSRRNPD---EDFTNVYIKPLPVDQVKTDEDLRKIFEPF 208
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I + + D NG SKG+GF F E A KA+E LNG + + V + K+E++
Sbjct: 209 GEIQNPSLKKDENGNSKGFGFCNFKLHEDAVKAVEGLNGQEMFGVTLQVNRLMSKREKEL 268
Query: 196 EINKSKFT-------------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK- 241
N K T N+YVK+ S+ T+++ Q+ F ++G I + R + K
Sbjct: 269 -YNIKKHTEKVEKFAEETNGRNLYVKSFSKDVTDKEFQEYFSKFGEIELFKIERVPETKE 327
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
SK FGFV +++ +DA A+E ++ YVG Q K+ E
Sbjct: 328 SKGFGFVLYKSKEDAQNAIEMAMLERLHGDLPYVGFFQTKAAHE 371
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/162 (61%), Positives = 129/162 (79%), Gaps = 1/162 (0%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF +A R
Sbjct: 7 YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAER 66
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAFGNILS
Sbjct: 67 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILS 126
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
CKV D NG S+GYGFV F+ E+A +AIE +NGMLLND++V
Sbjct: 127 CKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 167
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 18/171 (10%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAV 260
++YV +L TE L + F G I S V RD +S + ++NF+ DA RA+
Sbjct: 9 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERAL 68
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ +N + + + S+R+ L+ K N++IKNLDDSID++
Sbjct: 69 DTMNFEVIKGRPIRI----MWSQRDPGLR------------KSGVGNVFIKNLDDSIDNK 112
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
L FS FG+I SCKV+ D +G SRG GFV F T E A+RA+ MNG ++
Sbjct: 113 ALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLL 162
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 10/169 (5%)
Query: 109 SGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
SG G ++++ +L + L++ FS G I+S +V D+ +S GY ++ F
Sbjct: 3 SGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPA 62
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N ++ + + + +RD + KS NV++KNL +S + L +F
Sbjct: 63 DAERALDTMNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTF 118
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+G I S V+ D +G S+ +GFV+FE + A RA+E +NG +D++
Sbjct: 119 SAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRK 166
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S +V RD + S G ++ F P +A RAL
Sbjct: 10 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 69
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
MN +++ +P+ + +QR R
Sbjct: 70 TMNFEVIKGRPIRIMWSQRDPGLR 93
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 131/172 (76%), Gaps = 1/172 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K+ID+KAL++ FSAFGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
D G KGYGFV F +ESA++AI +NGM LN ++++VG F +ER+ E
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL +S + L F +G I S
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA+ A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL SID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKSIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/124 (85%), Positives = 114/124 (91%)
Query: 293 EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
EQ E ADKFQGANLY+KNLD SIDD+KLKQLFS FGSITSCKVMRDP+GISRGSGFVA
Sbjct: 1 EQAWNEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVA 60
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
F+TPEEASRA+LEMNGKMVV KPLYVALAQRKE RRARLQAQF+Q+RPVAMA +VA RMP
Sbjct: 61 FTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIRPVAMAPSVASRMP 120
Query: 413 MYPP 416
MYPP
Sbjct: 121 MYPP 124
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+K + N+Y+KNL S ++ L++ F ++G+ITS VMRD +G S+ GFV F ++A+
Sbjct: 9 DKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEAS 68
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
RA+ +NGK K YV AQ+K R L+ QF Q
Sbjct: 69 RAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD +ID L FS FG+I SCKV D NG S+G GFV F E A +AI ++
Sbjct: 15 NLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILEM 74
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
NG ++ K +YV RK+ R + +++F+ + ++ S
Sbjct: 75 NGKMVVGKPLYVALAQRKEVRRARL-QAQFSQIRPVAMAPSV 115
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A++F +LY+ +L+ ++ D +L LF+Q G + S +V RD S G G+V F+ +E
Sbjct: 8 ADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRD-PNGISRGSGFVAFTTPEE 66
Query: 78 AARALEMLNFTPLNGKPIRVMYSHR 102
A+RA+ +N + GKP+ V + R
Sbjct: 67 ASRAILEMNGKMVVGKPLYVALAQR 91
>gi|351699464|gb|EHB02383.1| Polyadenylate-binding protein 1-like 2 [Heterocephalus glaber]
Length = 200
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FS FGNILSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
D G KGYGFV F +ESA++AI+ +NGM LN ++++VG F +ER+ E
Sbjct: 123 CDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 63 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
V D G K +GFV+F+ + A RA++A+NG + ++ +VG+ + ERE E
Sbjct: 119 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 63 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 104
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG + + ++V
Sbjct: 105 ALYNIFSTFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGR 163
Query: 381 AQRKEDRRA 389
+ ++R A
Sbjct: 164 FKSHKEREA 172
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 365 EMNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLR 85
>gi|281340677|gb|EFB16261.1| hypothetical protein PANDA_006204 [Ailuropoda melanoleuca]
Length = 196
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/195 (54%), Positives = 146/195 (74%), Gaps = 3/195 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL A+VT+ L+ F+ +G V+S+R+CRDL TRRSLGY YVNF +A +AL+
Sbjct: 3 SLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + GKPIR+M+S RD LRKSG GN+FIKNLDK+ID+K L++ FSAFG ILS KV
Sbjct: 63 MNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NK-SKF 202
+D G S+GY FV F N+ +A +AIE++NG LL D +++VG F +++R+ E+ NK ++F
Sbjct: 123 SDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKVNEF 181
Query: 203 TNVYVKNLSESTTEE 217
TNVYVKN + +E
Sbjct: 182 TNVYVKNFGDDMDDE 196
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 16/210 (7%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FSA G +LS ++ DL +S GY +V F AQKA++
Sbjct: 2 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + KS NV++KNL +S + L + F +G I
Sbjct: 62 TMNFDMIKGKPIR----LMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G S+ + FV+F+N + A RA+E +NG D +VG+ + + +RE EL++
Sbjct: 118 SSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQN 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ + N+Y+KN D +DDE
Sbjct: 177 KVN----------EFTNVYVKNFGDDMDDE 196
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 101/200 (50%), Gaps = 22/200 (11%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
+YV +LS TE+ L K F G + S + RD +S + +VNF DA +A++ +
Sbjct: 4 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 63
Query: 264 NGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
N FD GK + S+R+ L+ K N++IKNLD SID++
Sbjct: 64 N---FD---MIKGKPIRLMWSQRDAYLR------------KSGIGNVFIKNLDKSIDNKT 105
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L + FS FG I S KVM D G SRG FV F A RA+ EMNG ++ L+V
Sbjct: 106 LYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRF 164
Query: 382 QRKEDRRARLQAQFAQMRPV 401
+ ++DR A LQ + + V
Sbjct: 165 KNRKDREAELQNKVNEFTNV 184
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/214 (55%), Positives = 151/214 (70%), Gaps = 8/214 (3%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVK+ + +E L++ F +YGTITS VM DGK + FGFV FEN + A AV+
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIK-DGKGRGFGFVAFENPESAEHAVQ 64
Query: 262 ALNGKKFDD-KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LNGK+ + K YVG+AQKK+ER++ELK +FEQ E ++QG NLY+KNLDDSIDDE
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST-PEEASRALLEMNGKMVVSKPLYVA 379
+L++ FSPFG+ITS KVM + G S+G GFV FS EEA++A+ EMNG++V SKPLYVA
Sbjct: 125 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 380 LAQRKEDRRARLQAQFAQ----MRPVAMASTVAP 409
LAQR EDR+A L +Q+ Q MR M P
Sbjct: 184 LAQRTEDRKAHLASQYMQRMANMRMQHMGQIFQP 217
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 36/234 (15%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++K+ ++ + L + F +G I S +V +G+ +G+GFV F+N ESA+ A+++L
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVMIK-DGKGRGFGFVAFENPESAEHAVQEL 66
Query: 173 NGMLLND-KQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
NG L + K +YVG +K ER E+ K +F N+YVKNL +S +E
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMEL-KRRFEQLKMERLTRYQGVNLYVKNLDDSIDDER 125
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF-ENSDDAARAVEALNGKKFDDKEWYVGK 277
L+K F +GTITSA VM + +G+SK FGFV F +++++A +AV +NG+ K YV
Sbjct: 126 LRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVAL 184
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
AQ+ +R+ L Q+ Q M AN+ ++++ Q+F P G+
Sbjct: 185 AQRTEDRKAHLASQYMQRM---------ANMRMQHMG---------QIFQPGGN 220
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 21/192 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV D + D L ++F + G + S RV + + G+G+V F N + A A++
Sbjct: 7 TNVYVKDFGDELNDETLKEMFEKYGTITSHRVM--IKDGKGRGFGFVAFENPESAEHAVQ 64
Query: 84 MLNFTPL-NGKPIRVMYSHRD----------------PSLRKSGAGNIFIKNLDKAIDHK 126
LN L GK + V + + L + N+++KNLD +ID +
Sbjct: 65 ELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDDE 124
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNE-ESAQKAIEKLNGMLLNDKQVYVG 185
L FS FG I S KV + G+SKG+GFV F E A KA+ ++NG ++ K +YV
Sbjct: 125 RLRKEFSPFGTITSAKVMLE-EGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVA 183
Query: 186 HFLRKQERDTEI 197
R ++R +
Sbjct: 184 LAQRTEDRKAHL 195
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 179/281 (63%), Gaps = 6/281 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N N +T LYVGDL N+ + + +F +G + SV++ RD+S+ +GY +V F N +
Sbjct: 33 NKNSDQSTCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFK 92
Query: 77 EAARALEMLN--FTPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133
+A RAL LN F P KP+R+M+ +D L KSG GNIFIKNL D K+L F
Sbjct: 93 DAERALTKLNYYFDPEKMKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFL 152
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL-RKQE 192
FG ILSCKVA D NG S GYGFV F++E++++ AIEK NG+++ +K+++VG FL RK
Sbjct: 153 DFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDR 212
Query: 193 RDTEINKSKFTNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
++ + K+ FTN+Y+KN+S E+ E ++ F +G ITS + ++ + +K F FVN+E
Sbjct: 213 KNFGMTKTGFTNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKNNNF-TKGFAFVNYE 271
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
++A A+ +N KK + YVGKA+ K ER+ L+ +F
Sbjct: 272 LPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKF 312
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 149/294 (50%), Gaps = 27/294 (9%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
+++ +L + + + F G + S K+ D++ G+ GY FV+F+N + A++A+ KL
Sbjct: 42 LYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKL 101
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFT------NVYVKNLSESTTEEDLQKSFGEY 226
N +K ++K R K KF N+++KNL + L+K F ++
Sbjct: 102 NYYFDPEK-------MKKPLRLMWYQKDKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDF 154
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S V D +G S +GFV+FE+ + A+E NG +K+ +VG + +R
Sbjct: 155 GKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDR-- 212
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLD-DSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345
+N F N+YIKN+ ++ ++ +K LF FG ITS + ++ + +
Sbjct: 213 -------KNFGMTKTGF--TNIYIKNISPENCNETFIKDLFDIFGKITSIYIPKN-NNFT 262
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G FV + PEEA A+ MN K + + LYV A+ K +R+ LQ +F + +
Sbjct: 263 KGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYVGKAETKIERQRHLQKKFLEKK 316
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 194 DTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNF 250
+ EINK+ + T +YV +L + EED++K F G + S + RD G+ + FV F
Sbjct: 29 ENEINKNSDQSTCLYVGDLPLNLKEEDIEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEF 88
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ----GA 306
EN DA RA+ LN +Y + K L M DKF G
Sbjct: 89 ENFKDAERALTKLN--------YYFDPEKMKKPLRL---------MWYQKDKFLLKSGGG 131
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N++IKNL D + L+++F FG I SCKV D +G S G GFV F + + A+ +
Sbjct: 132 NIFIKNLPLFFDSKSLEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKT 191
Query: 367 NGKMVVSKPLYVALAQRKEDRR 388
NG ++ K ++V ++DR+
Sbjct: 192 NGLIIGEKKIFVGPFLSRKDRK 213
>gi|402585898|gb|EJW79837.1| Poly(A) binding protein [Wuchereria bancrofti]
Length = 175
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 122/161 (75%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
G + SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVN
Sbjct: 6 TAGAGMTPSYPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVN 65
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
F +A RAL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+KA++DT
Sbjct: 66 FQQPADAERALDTMNFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDT 125
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
FS FGNILSCKVA D SKGYGFV F+ EESAQKAIEK+
Sbjct: 126 FSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 19 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 78
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K + +Q+ + +M+ + N++IKNLD SID++ +
Sbjct: 79 MNFDMMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDNKAI 122
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
FS FG+I SCKV D S+G GFV F T E A +A+
Sbjct: 123 YDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAI 163
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L + FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 77
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + + +RD + +S N+++KNL +S + + +F +G I
Sbjct: 78 TMNFDMMYGKPIRI----MWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNIL 133
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
S V D + SK +GFV+FE + A +A+E +
Sbjct: 134 SCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRA 362
A+LY+ +L + + L + FS G + S +V RD I+R G +V F P +A RA
Sbjct: 18 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADAERA 75
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
L MN M+ KP+ + +QR R
Sbjct: 76 LDTMNFDMMYGKPIRIMWSQRDPSMR 101
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/180 (60%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L++ F E+G ITSA VM D +GKSK FGFV F++S+ A AV+ALNGK F D++ YVG+A
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 279 QKKSERELELKHQFEQNMKEAADKF-QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
QKK+ER EL+ FE+ E + ++ QG NLY+KNLDDSIDD +LKQ F FG+ITS KV
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M D + S+G GFV FS PEEA++A+ EMNGK+ SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F FG I S KV D NG+SKG+GFV F + E+A+ A++ LNG + D+Q+YVG
Sbjct: 10 LREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRA 69
Query: 188 LRKQERDTEINK----------SKFT---NVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
+K ER E+ S++T N+YVKNL +S + L++ F +G ITSA V
Sbjct: 70 QKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSAKV 129
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
M D + +SK FGFV F N ++A +AV +NGK K YV AQ+K +R+ L Q+ Q
Sbjct: 130 MTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQ 189
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 18/176 (10%)
Query: 39 QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV- 97
+L ++F + G++ S +V D +S G+G+V F +++ A A++ LN + + V
Sbjct: 9 KLREMFLEFGEITSAKVMID-ENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVG 67
Query: 98 -----------MYSH-----RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ SH + S R + N+++KNLD +ID L F FGNI S
Sbjct: 68 RAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGNITSA 127
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
KV TD N +SKG+GFV F N E A KA+ ++NG + K +YV RK++R +
Sbjct: 128 KVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHL 183
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%)
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL+++F FG ITS KVM D +G S+G GFV F E A A+ +NGKM + LYV
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGR 68
Query: 381 AQRKEDRRARLQAQFAQMR 399
AQ+K +R L++ F + R
Sbjct: 69 AQKKNERLDELRSHFEKQR 87
>gi|147864210|emb|CAN80948.1| hypothetical protein VITISV_016699 [Vitis vinifera]
Length = 183
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/138 (73%), Positives = 114/138 (82%), Gaps = 3/138 (2%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
NGG NQ +TSLYVG LE+NVTDS L+DLF Q+G VVSV++C DLSTRRSL YG VN
Sbjct: 9 NGG---ENQLXSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVN 65
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
N Q+ ARAL++LNFT LNGKP R+MYSH DPS+RKSG GNIFIKNLDK +DHKALHDT
Sbjct: 66 HGNPQDTARALDVLNFTLLNGKPTRIMYSHCDPSVRKSGTGNIFIKNLDKRVDHKALHDT 125
Query: 132 FSAFGNILSCKVATDLNG 149
FSAFGNILSCKVA D +G
Sbjct: 126 FSAFGNILSCKVAADASG 143
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDA 256
N+ T++YV L + T+ L FG+ G + S + D +S +G VN N D
Sbjct: 13 NQLXSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDT 72
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
ARA++ LN + K + + + K N++IKNLD
Sbjct: 73 ARALDVLNFTLLNGKPTRI----------------MYSHCDPSVRKSGTGNIFIKNLDKR 116
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
+D + L FS FG+I SCKV D SG R
Sbjct: 117 VDHKALHDTFSAFGNILSCKVAADASGSYR 146
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKL 172
+++ L+ + L D F G ++S ++ DL+ + S YG V N + +A++ L
Sbjct: 20 LYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTARALDVL 79
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N LLN K + + D + KS N+++KNL + + L +F +G I S
Sbjct: 80 NFTLLNGKPTRIMY----SHCDPSVRKSGTGNIFIKNLDKRVDHKALHDTFSAFGNILSC 135
Query: 233 VVMRDGDG 240
V D G
Sbjct: 136 KVAADASG 143
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 154/214 (71%), Gaps = 11/214 (5%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGF 156
M+S RDPSLRKSG GNIF+KNLD +ID+KAL+DTFS FGNILSCKVA D G SKGYG+
Sbjct: 1 MWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGY 60
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V ++ E+A +AI K+NGML+ +V+VGHF ++Q+R + +TN YVKN+ T+
Sbjct: 61 VHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRP---DADDWTNCYVKNIPTQWTD 117
Query: 217 EDLQKSFGEYGTITSAVVMRDGDG--KSKCFGFVNFENSDDAARAVEALNGKKFD----- 269
DL K F +G + SAVVM+D +++ FGFVN+E+S+ A +AV+ALNGK +
Sbjct: 118 ADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGV 177
Query: 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
+ E YVGKAQK+SERE EL+++FEQ E +K+
Sbjct: 178 ETELYVGKAQKRSERERELRNKFEQLKMERINKY 211
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNF 250
+RD + KS N++VKNL S + L +F +G I S V D G SK +G+V++
Sbjct: 4 QRDPSLRKSGVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHY 63
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
E ++ A A+ +NG E +VG QK+ +R D N Y+
Sbjct: 64 ETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDR---------------PDADDWTNCYV 108
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI--SRGSGFVAFSTPEEASRALLEMNG 368
KN+ D L + F PFG + S VM+D + +RG GFV + E A +A+ +NG
Sbjct: 109 KNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNG 168
Query: 369 KMV-----VSKPLYVALAQRKEDRRARLQAQFAQMR 399
K V LYV AQ++ +R L+ +F Q++
Sbjct: 169 KSYPAGEGVETELYVGKAQKRSERERELRNKFEQLK 204
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 106/201 (52%), Gaps = 9/201 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +++V +L+ ++ + LYD F+ G ++S +V D +T S GYGYV++ A+ A A
Sbjct: 13 GVGNIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEA 72
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ +N + G + V + R N ++KN+ L F FG +LS
Sbjct: 73 IAKINGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNIPTQWTDADLLKEFEPFGKVLS 132
Query: 141 CKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNGMLLN-----DKQVYVGHFLRKQER 193
V D Q++G+GFV +++ E+A KA++ LNG + ++YVG ++ ER
Sbjct: 133 AVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETELYVGKAQKRSER 192
Query: 194 DTEINKSKFTNVYVKNLSEST 214
+ E+ ++KF + ++ +++ T
Sbjct: 193 EREL-RNKFEQLKMERINKYT 212
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 220/403 (54%), Gaps = 31/403 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVGDL + +S L+ +F+ +G+VV +++ + + S + +V F+N A RA++
Sbjct: 13 TIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLSS--FAFVTFANGDAADRAIKE 70
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N LN K IRV+ + S R+ N+ +KNL + ++ L+DTFS FG I+S K+A
Sbjct: 71 YNNFRLNKKNIRVLPCMDEKSKREDA--NLIVKNLPSSFTNENLYDTFSVFGTIISAKIA 128
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF----LRKQERDTEINK- 199
T +G+ K YGFVQFD ++SA+ AI+ +G L++K + V F RKQE NK
Sbjct: 129 TYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVEIFDKEKRRKQEEQALENKP 188
Query: 200 ----SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV-MRDGDGKSKCFGFVNFENSD 254
KFTN ++KN ES TE+DL+ +YG ITS ++DG SK F F NFE+ +
Sbjct: 189 VKLEPKFTNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESHE 248
Query: 255 DAARAVEALNGKK---FDDKEW-------YVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
A A++ L+GK+ F++ + Y+ KAQKK ERE LK FEQ E +
Sbjct: 249 SAQNAIQELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQN--I 306
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
NLYI N+ I+ + + ++FS FGSI S + D R +V +ST +EA A+
Sbjct: 307 KRNLYITNIPAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIE 366
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTV 407
+ N + + L V + K +R M + + STV
Sbjct: 367 KGNELFIDNNKLNVTYFKNKAERTKE-----KMMSSININSTV 404
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 27/217 (12%)
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+ + E++ EI F +YV +LS T E DL + F G + + + + S F F
Sbjct: 1 MDQNEKNNEI----FATIYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLS-SFAF 55
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQ-KKSERELELKHQFEQNMKEAADKFQGA 306
V F N D A RA++ N + + K V +KS+RE A
Sbjct: 56 VTFANGDAADRAIKEYNNFRLNKKNIRVLPCMDEKSKRE-------------------DA 96
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
NL +KNL S +E L FS FG+I S K+ G + GFV F + A A+
Sbjct: 97 NLIVKNLPSSFTNENLYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHC 156
Query: 367 NGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAM 403
+G + +K + V + +++ R+ QA + +PV +
Sbjct: 157 DGGKLDNKIIQVEIFDKEKRRKQEEQA--LENKPVKL 191
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 24/197 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+ ++ + + T+ L L N+ G + S+ T S G+ + NF + + A A++
Sbjct: 196 TNCFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQ 255
Query: 84 ML----------NFTPLNGKPIRVMYSH----RDPSLRKSGAG----------NIFIKNL 119
L N +P + + R+ L++S N++I N+
Sbjct: 256 ELHGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQNIKRNLYITNI 315
Query: 120 DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179
I+ + + FS FG+I+S + D + + Y +V + + A AIEK N + +++
Sbjct: 316 PAFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIEKGNELFIDN 375
Query: 180 KQVYVGHFLRKQERDTE 196
++ V +F K ER E
Sbjct: 376 NKLNVTYFKNKAERTKE 392
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/178 (58%), Positives = 136/178 (76%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG+YG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K YVG+AQKK ER+ ELK +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTELKRKF 177
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 114/188 (60%), Gaps = 11/188 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK++F
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEVFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+G S KVM D SG S+G GFV+F E+A +A+ MNGK + K +YV AQ+K +R
Sbjct: 110 KYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVER 169
Query: 388 RARLQAQF 395
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVXFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F +G LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEVFGKYGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD +G+SKG+GFV F+ E AQKA++ +NG LN K +YVG +K ER TE+ K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVERQTEL-KRKF 177
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/178 (57%), Positives = 137/178 (76%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 11/188 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RARLQAQF 395
+ L+ +F
Sbjct: 170 QTELKRKF 177
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL-KRKF 177
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF + G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N LNGK I V
Sbjct: 138 HEDAQKAVDEMNGKELNGKQIYV 160
>gi|123407356|ref|XP_001302991.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884332|gb|EAX90061.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 477
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 210/404 (51%), Gaps = 26/404 (6%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +V ++ + ++F G S V + +V F + + A RA+ +
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 86 NFTPLNGKPIRVMYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N+T L+G PIR+++S DP + K+ G +FI+ LD+ I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ NG+S+GYGF+ F E+ A++A L +N K + + + + ++ E F
Sbjct: 126 IPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE---ETF 181
Query: 203 TNVYVKNLSEST--TEEDLQKSFGEYGTIT-----SAVVMRDGDGKSKCFGFVNFENSDD 255
TNV++K L T++DL F E+G + + R DG S FGF NF++ +D
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFCNFKHHED 241
Query: 256 AARAVEALNGKKFDDKE--WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
A +AV+ALNGK+ + + + +AQ K+ER+ L Q + + ++ +G NLY+KN
Sbjct: 242 AVKAVDALNGKQHESGKVTFSCCRAQTKAERQAFLAKQSAEFRRRLNEETRGRNLYVKNF 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGI--SRGSGFVAFSTPEEASRALLEMNGKMV 371
D S+ DE+ K+ F FG + C + R+ S+G GFV F T E A AL +
Sbjct: 302 DQSVTDEQFKEYFEQFGEVEKCSIRREAQEPHESKGFGFVLFKTKESAQNALENAVITPL 361
Query: 372 VSKPLYVALAQRKEDRR------ARLQAQFAQMRPVAMASTVAP 409
K Y+ L + KE+R R Q M P + V P
Sbjct: 362 NGKTPYIGLFKMKEEREREKASNQRKQQPKGAMIPNTIGGPVIP 405
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 28/288 (9%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++ L+ N+ SQL+D F+ G++VS ++ L+ +S GYG++ F +A RA
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 85 LNFTPLNGKPIRVMYSHRDPSLR--KSGAGNIFIKNLDKAI--DHKALHDTFSAFGNIL- 139
L +NGKPI++ + ++ P+ + + N+FIK L I L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 140 ----SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG---------- 185
+ + +G S +GF F + E A KA++ LNG +V
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFCNFKHHEDAVKAVDALNGKQHESGKVTFSCCRAQTKAER 272
Query: 186 -HFLRKQ--ERDTEIN-KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-- 239
FL KQ E +N +++ N+YVKN +S T+E ++ F ++G + + R+
Sbjct: 273 QAFLAKQSAEFRRRLNEETRGRNLYVKNFDQSVTDEQFKEYFEQFGEVEKCSIRREAQEP 332
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+SK FGFV F+ + A A+E + K Y+G + K ERE E
Sbjct: 333 HESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERERE 380
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 135/178 (75%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L+ FG++G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ E K +F
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEXKRKF 177
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 114/188 (60%), Gaps = 11/188 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RARLQAQF 395
+ + +F
Sbjct: 170 QTEXKRKF 177
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L D F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE K KF
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE-XKRKF 177
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N LNGK I V
Sbjct: 138 HEDAQKAVDEMNGKELNGKQIYV 160
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 18/375 (4%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ ++YVGDL DS L+ +F+ +G+++++++ + + S + +V F N ++A +A+
Sbjct: 13 SLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGESAPS--FAFVTFENEEDAEKAV 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
L+ + IRVM P GNIF+KNL ++ K L D FS FG I+SCK
Sbjct: 71 REYKHYELHDRQIRVMRKDERPP----ETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCK 126
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIE---KLNGMLLNDKQVYVGHFLRKQER-DTEIN 198
VAT G+SKGYGFVQF + SA+K I+ LNG++L ++ V + + ++ +++
Sbjct: 127 VATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKV 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ FTN ++KN S E++L +YG +TS DGK K F F NFE + A
Sbjct: 187 STMFTNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALN 246
Query: 259 AVEALNGK-KFDD-----KEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
A+ L+G FD+ + +Y+ K QK+ ER L+ FEQ + + NLYI N
Sbjct: 247 AINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQN--YKKNLYITN 304
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
+ + E+L +F FGSITS V D + + ++ +STPEEAS A+ N +
Sbjct: 305 IPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLD 364
Query: 373 SKPLYVALAQRKEDR 387
L VA + K +R
Sbjct: 365 GNRLQVAYFKNKLER 379
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 138/301 (45%), Gaps = 31/301 (10%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQS-KGYGFVQFDNEESAQ 166
KS + I++ +L L FS G IL+ K+ G+S + FV F+NEE A+
Sbjct: 10 KSDSLTIYVGDLPPKTIDSDLFRIFSNVGKILNIKLIK--RGESAPSFAFVTFENEEDAE 67
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY 226
KA+ + L+D+Q+ V +RK ER E N++VKNL ES T +DL +F +
Sbjct: 68 KAVREYKHYELHDRQIRV---MRKDERPPETG-----NIFVKNLPESFTSKDLDDAFSMF 119
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA---LNGKKFDDKEWYVGKAQKKSE 283
G I S V GKSK +GFV F+ A + ++ LNG + V
Sbjct: 120 GEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVV-------- 171
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
EL + K+ + F N +IKN S+ +++L L +G +TS G
Sbjct: 172 -ELYNPEMKKGESKKVSTMF--TNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDG 228
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVV------SKPLYVALAQRKEDRRARLQAQFAQ 397
+G F F T E A A+ ++G +P Y+ Q++E+R L+ F Q
Sbjct: 229 KPKGFAFANFETHESALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQ 288
Query: 398 M 398
+
Sbjct: 289 L 289
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNFSNAQEAAR 80
T+ ++ + +V + +L DL + G+V S+ C T+ + G+ + NF + A
Sbjct: 191 TNCFIKNFPGSVGEKELLDLLEKYGKVTSL--C--FPTKDDGKPKGFAFANFETHESALN 246
Query: 81 ALEMLNFT-PLN-----GKPIRVM----YSHRDPSLRK-----SGAG-----NIFIKNLD 120
A+ L+ T P + G+P + R LRK S G N++I N+
Sbjct: 247 AINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQLSMQGQNYKKNLYITNIP 306
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+ + L + F FG+I S V D K Y ++ + E A A+E+ N + L+
Sbjct: 307 EGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNEIYLDGN 366
Query: 181 QVYVGHFLRKQERDTE 196
++ V +F K ER E
Sbjct: 367 RLQVAYFKNKLERMKE 382
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
MRD +G S+CFGFVNFE S+ A AV+ LNGK D YV +AQKKSER+ ELK +FE
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKFEH 60
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+ + +K Q NLY+KNLDD I+DE L++LF FG + SCKVM D G S+G GFV+F+
Sbjct: 61 DKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFA 120
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVA-MASTVAPRM 411
T E+A+ A+L+MNGKMV KPLYVA+AQRKE+R+A L A FA++R +A MA T+ P +
Sbjct: 121 TVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTLGPNI 178
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 86/160 (53%), Gaps = 14/160 (8%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF--- 202
D NG S+ +GFV F+ E A+ A++ LNG + D +YV +K ER E+ K+KF
Sbjct: 3 DANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAEL-KAKFEHD 61
Query: 203 ----------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
N+Y+KNL + +E L+K F +G + S VM D G+SK GFV+F
Sbjct: 62 KNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFAT 121
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+DA A+ +NGK K YV AQ+K ER+ L F
Sbjct: 122 VEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 161
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 26/148 (17%)
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPI--RVMY-------SHRDPSLR---------- 107
+G+VNF ++ A A++ LN GK I V+Y S R L+
Sbjct: 11 FGFVNFEKSECARNAVKNLN-----GKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQK 65
Query: 108 --KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
K N+++KNLD I+ + L F FG + SCKV D +G+SKG GFV F E A
Sbjct: 66 FEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDA 125
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQER 193
AI K+NG ++ K +YV RK+ER
Sbjct: 126 NNAILKMNGKMVGKKPLYVAVAQRKEER 153
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +LY+ +L+ ++ D L LF G+V S +V D S RS G G+V+F+ ++A A+
Sbjct: 71 TVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLD-SHGRSKGCGFVSFATVEDANNAI 129
Query: 83 EMLNFTPLNGKPIRVMYSHR 102
+N + KP+ V + R
Sbjct: 130 LKMNGKMVGKKPLYVAVAQR 149
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 101/177 (57%), Positives = 133/177 (75%), Gaps = 3/177 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+D FSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG +G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
M D GKSK FGFV+FE +DA +AV +NGK+ + K+ YVG+AQKK ER+ ELK +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELKRK 176
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
TD +G+SKG+GFV F+ E AQKA+ ++NG LN KQ+YVG +K ER TE+ +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTELKR 175
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 371 VVSKPLYVALAQRKEDRRARLQAQ 394
+ + ++V + +++R A L A+
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR 83
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A+ +N LNGK I V
Sbjct: 138 HEDAQKAVXEMNGKELNGKQIYV 160
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 123/159 (77%), Gaps = 1/159 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSLYVGDL +VT+ LY+ F+ G V+S+RVCR L TRRSLGY YV+F + ++A AL
Sbjct: 15 TSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN 74
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+N+ + G+PIR+ + RDPS RKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCK+
Sbjct: 75 TMNYDTIKGQPIRITWYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKI 134
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
D +G +GYGFV F+ EESA AIE++NG +L+ K+V
Sbjct: 135 VCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKKV 172
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
T++YV +L TE+ L + F G + S V R +S + +V+F++ +DA A+
Sbjct: 15 TSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN 74
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+N + + Q+ + K N++IKNLD SID++
Sbjct: 75 TMNYDTIKGQPIRITWYQRDP----------------SPRKSGVGNVFIKNLDKSIDNKA 118
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
L FS FG+I SCK++ D G RG GFV F E A+ A+ +NG M+ K
Sbjct: 119 LYDTFSAFGNILSCKIVCDEHGF-RGYGFVHFEKEESATIAIERVNGTMLHGK 170
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGF 156
M+S P+ ++++ +L + L++ FS G +LS +V L +S GY +
Sbjct: 1 MFSLVFPAGPIHPMTSLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAY 60
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V F + E A+ A+ +N + + + + + +RD KS NV++KNL +S
Sbjct: 61 VDFKHLEDAETALNTMNYDTIKGQPIRITWY----QRDPSPRKSGVGNVFIKNLDKSIDN 116
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+ L +F +G I S ++ D G + +GFV+FE + A A+E +NG K+
Sbjct: 117 KALYDTFSAFGNILSCKIVCDEHG-FRGYGFVHFEKEESATIAIERVNGTMLHGKK 171
>gi|387594015|gb|EIJ89039.1| hypothetical protein NEQG_00858 [Nematocida parisii ERTm3]
gi|387595783|gb|EIJ93406.1| hypothetical protein NEPG_01748 [Nematocida parisii ERTm1]
Length = 512
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 206/371 (55%), Gaps = 14/371 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNFSNAQEAARALE 83
++YVGD+ T+S+L+ +F+++GQ+ ++ + R ++S + Y YV F + A+E
Sbjct: 20 TIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYAYVTFFDESSVPIAIE 79
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
NF L+G IRVM +++ S+ + GNI IKNL K D++ L+DTF FG ILSCKV
Sbjct: 80 TFNFYSLHGSQIRVMPFNKE-SVVGNREGNIVIKNLPKETDNQTLYDTFIVFGPILSCKV 138
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSK 201
+ + G G++Q+ + + A+ AI+ +N ++LN K++ + K+E+ E
Sbjct: 139 VKNNLSECTGVGYIQYKDPKVAEVAIQMINKIVLNGKKLCATQCIPNDKREKKRENVAKI 198
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+YVKN TEE+++ EYG +TS + R G+ + F F N++ + AA A+E
Sbjct: 199 FTNIYVKNFPAGITEEEIEAKLKEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAAIE 258
Query: 262 ALNGKKFD-----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
AL+ K F + YV +A+ K+ER E+ F Q + + N+YI NL
Sbjct: 259 ALHDKPFPGYPEGTENLYVQRAKLKNERVEEMLEYFSQ----VPEHERRRNIYITNLPGE 314
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+++E + + FS +G I + K+ D +R G+V + E+A++A+ N + L
Sbjct: 315 LNEEDVVKYFSKYGPIVTYKLGTDAKN-NRSYGYVFYQKAEDAAKAVELANKSEYCEQTL 373
Query: 377 YVALAQRKEDR 387
VA + K+ R
Sbjct: 374 DVAFFKCKKLR 384
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 136/287 (47%), Gaps = 30/287 (10%)
Query: 28 VGDLEANV--------TDSQ-LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
VG+ E N+ TD+Q LYD F G ++S +V ++ + G GY+ + + + A
Sbjct: 102 VGNREGNIVIKNLPKETDNQTLYDTFIVFGPILSCKVVKN-NLSECTGVGYIQYKDPKVA 160
Query: 79 ARALEMLNFTPLNGKPI---RVMYSHRDPSLRKSGA---GNIFIKNLDKAIDHKALHDTF 132
A++M+N LNGK + + + + + R++ A NI++KN I + +
Sbjct: 161 EVAIQMINKIVLNGKKLCATQCIPNDKREKKRENVAKIFTNIYVKNFPAGITEEEIEAKL 220
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN-----GMLLNDKQVYVGHF 187
+G + S +G+ +G+ F + E A AIE L+ G + +YV
Sbjct: 221 KEYGELTSFLAPRTDSGEMRGFAFANYQTHEMAAAAIEALHDKPFPGYPEGTENLYVQRA 280
Query: 188 LRKQERDTEI--------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
K ER E+ + N+Y+ NL EED+ K F +YG I + + D
Sbjct: 281 KLKNERVEEMLEYFSQVPEHERRRNIYITNLPGELNEEDVVKYFSKYGPIVTYKLGTDAK 340
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
++ +G+V ++ ++DAA+AVE N ++ ++ V + K REL
Sbjct: 341 N-NRSYGYVFYQKAEDAAKAVELANKSEYCEQTLDVAFFKCKKLREL 386
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG--KSKCFG 246
+K++++ +I K +YV ++ +TTE +L + F + G I + ++R K KC+
Sbjct: 7 QKEKKEGQIGKQ--NTIYVGDIPMATTESELFQIFSKVGQIYTISILRKEVSIVKDKCYA 64
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS---ERELELKHQFEQNMKEAADKF 303
+V F + A+E N + V K+S RE
Sbjct: 65 YVTFFDESSVPIAIETFNFYSLHGSQIRVMPFNKESVVGNRE------------------ 106
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
N+ IKNL D++ L F FG I SCKV+++ G G++ + P+ A A
Sbjct: 107 --GNIVIKNLPKETDNQTLYDTFIVFGPILSCKVVKNNLSECTGVGYIQYKDPKVAEVA- 163
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
++M K+V++ A D+R + + A++
Sbjct: 164 IQMINKIVLNGKKLCATQCIPNDKREKKRENVAKI 198
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/176 (57%), Positives = 132/176 (75%), Gaps = 3/176 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN E +E L++ FG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
M D GKSK FGFV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 175
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
S KVM D SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R
Sbjct: 110 XXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN + +D + L + F LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 175
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 371 VVSKPLYVALAQRKEDRRARLQAQ 394
+ + ++V + +++R A L A+
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR 83
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRV 97
++A +A++ +N LNGK I V
Sbjct: 138 HEDAQKAVDEMNGKELNGKQIYV 160
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 131/375 (34%), Positives = 207/375 (55%), Gaps = 21/375 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNFSNAQEAARA 81
++YVGDL +S LY +F+ +G ++++++ + D + Y YV FS +EA A
Sbjct: 17 TVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEALEA 76
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LNF ++ K +RVM ++ ++ GNI IKNL D K LHDTFS FG ILSC
Sbjct: 77 VNKLNFFKVHDKEMRVMLYDKE-RIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEILSC 135
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINK 199
KVA + G+ KG+GFVQF N+ A+KA++ M ++ GH ++ K E++ +I
Sbjct: 136 KVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMD------GHAIKVEKYEKNYKIKT 189
Query: 200 SK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
FTNV+ KN +TTE++++ F G ++S DG + FGF N+EN+ DA
Sbjct: 190 GSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQ 249
Query: 258 RAVEALNGKK-FDDK---EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
RA++ L+GK F+ K +YV +AQ K +R L FE+ + NLY+ L
Sbjct: 250 RAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN--YKRNLYVTRL 307
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
++ E++++LFS FG + S V +D + +V FST +EAS A+ + N +
Sbjct: 308 PNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYID 367
Query: 373 SKPLYVALAQRKEDR 387
S + + + K +R
Sbjct: 368 SVKINITYFKSKNER 382
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 140/279 (50%), Gaps = 20/279 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++ + +L A+ L+D F+ G+++S +V + S + G+G+V F N A +AL+
Sbjct: 107 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVALN-SQGKCKGFGFVQFKNKNGARKALKF 165
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGA---GNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++G I+V ++ + K+G+ N+F KN + + D F + G + S
Sbjct: 166 GTEMQMDGHAIKVEKYEKNYKI-KTGSRAFTNVFFKNFPLTTTEQEMKDIFMSIGKVSSF 224
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND----KQVYVGHFLRKQERDTEI 197
A +G +G+GF ++N AQ+AI++L+G + + + YV KQ+R +
Sbjct: 225 YFAAKPDGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPFYVQQAQTKQQRLDSL 284
Query: 198 NKS--KFT--------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFG 246
+ + K + N+YV L + +E++Q+ F ++G + S V +D + K +
Sbjct: 285 SSAFEKLSMSGLNYKRNLYVTRLPNTYGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWA 344
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+V F +D+A+ AVE N D + + + K+ERE
Sbjct: 345 YVCFSTADEASIAVEKGNEIYIDSVKINITYFKSKNERE 383
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 29/192 (15%)
Query: 192 ERDTEINKSKFTN---VYVKNLSESTTEEDLQKSFGEYGTITSAVV----MRDGDGKSKC 244
E+ ++I K+K N VYV +LS E DL K F G+I + + M + + C
Sbjct: 2 EKASKIEKTKKENNCTVYVGDLSLKAVESDLYKIFSTVGSIITIKLVKPAMDNFPNYTTC 61
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+ +V F ++A AV LN K DKE V K+ + ++
Sbjct: 62 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD----------------- 104
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL- 363
N+ IKNL D + L FS FG I SCKV + G +G GFV F A +AL
Sbjct: 105 RGNIVIKNLSADCDSKTLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALK 164
Query: 364 ----LEMNGKMV 371
++M+G +
Sbjct: 165 FGTEMQMDGHAI 176
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T+++ + T+ ++ D+F +G+V S + T R G+G+ N+ NA +A RA+
Sbjct: 195 TNVFFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLR--GFGFANYENATDAQRAI 252
Query: 83 EMLN----FTPLNGKPIRVMYSHRD-----------PSLRKSGAG---NIFIKNLDKAID 124
+ L+ F +P V + L SG N+++ L
Sbjct: 253 DELSGKDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPNTYG 312
Query: 125 HKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
+ + + FS FG ++S V D + + K + +V F + A A+EK N + ++ ++
Sbjct: 313 KEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDSVKIN 372
Query: 184 VGHFLRKQERD 194
+ +F K ER+
Sbjct: 373 ITYFKSKNERE 383
>gi|296081049|emb|CBI18330.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 198 bits (503), Expect = 5e-48, Method: Composition-based stats.
Identities = 97/142 (68%), Positives = 110/142 (77%), Gaps = 3/142 (2%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
NGG NQ +TSLYVG LE+NVTDS L+DLF Q+G VVSV++C DLSTRRSL YG VN
Sbjct: 6 NGG---ENQLVSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVN 62
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131
N Q+ RAL++LNFT LNGKP R+MYSH DPS+RKSG NIFIKNLDK +DHKAL DT
Sbjct: 63 HGNPQDTVRALDVLNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDT 122
Query: 132 FSAFGNILSCKVATDLNGQSKG 153
FS FGNI SCKVA D +G G
Sbjct: 123 FSTFGNIFSCKVAADASGSYSG 144
Score = 63.2 bits (152), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVE 261
T++YV L + T+ L FG+ G + S + D +S +G VN N D RA++
Sbjct: 15 TSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALD 74
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + K + + + +++++ + N++IKNLD +D +
Sbjct: 75 VLNFTHLNGKPTRI------------MYSHCDPSVRKSGTR----NIFIKNLDKRVDHKA 118
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRG 347
L+ FS FG+I SCKV D SG G
Sbjct: 119 LRDTFSTFGNIFSCKVAADASGSYSG 144
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEK 171
++++ L+ + L D F G ++S ++ DL+ + S YG V N + +A++
Sbjct: 16 SLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDV 75
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN LN K + + D + KS N+++KNL + + L+ +F +G I S
Sbjct: 76 LNFTHLNGKPTRIMY----SHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFS 131
Query: 232 AVVMRDGDG 240
V D G
Sbjct: 132 CKVAADASG 140
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 132/178 (74%), Gaps = 3/178 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +++A +AIEK+NGML
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ E+ +FTNVY+KN + +E L++ F +YG S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
M D GKSK FGFV+FE +DA +AVE +NGK + K +VG+AQKK ER+ ELK +F
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 118/188 (62%), Gaps = 11/188 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L +F +G I S V+ D +G SK + FV+FE D A RA+E +NG
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE EL + A +F N+YIKN D +DDE+LK++FS
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNFGDDMDDERLKEMFS 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+G S KVM D +G S+G GFV+F E+A++A+ EMNGK V K ++V AQ+K +R
Sbjct: 110 KYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVER 169
Query: 388 RARLQAQF 395
+A L+ +F
Sbjct: 170 QAELKRKF 177
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GY +V+F A RA+E +N
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 59
Query: 90 LNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V + R + GA N++IKN +D + L + FS +G LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
TD G+SKG+GFV F+ E A KA+E++NG +N K V+VG +K ER E+ K KF
Sbjct: 120 MTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAEL-KRKF 177
>gi|440857933|gb|ELR44433.1| hypothetical protein M91_06292, partial [Bos grunniens mutus]
Length = 149
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+ +A RALE
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ FSAFGNILSCKVA
Sbjct: 61 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 120
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
D G KGYGFV F +ESA++AI+ +NG
Sbjct: 121 CDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 61 LNFDVIKGRPVRIMW----SQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 116
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265
V D G K +GFV+F+ + A RA++A+NG
Sbjct: 117 CKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 22/168 (13%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
LN FD + G+ + S+R+ L+ K N++IKNL +ID++
Sbjct: 61 LN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNVFIKNLGKTIDNK 102
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
L +FS FG+I SCKV D G +G GFV F E A RA+ MNG
Sbjct: 103 ALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNG 149
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
+LY+ +L + + L + FSP G I S ++ RD + S G +V + P +A RAL
Sbjct: 1 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 60
Query: 366 MNGKMVVSKPLYVALAQRKEDRR 388
+N ++ +P+ + +QR R
Sbjct: 61 LNFDVIKGRPVRIMWSQRDPSLR 83
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 206/375 (54%), Gaps = 21/375 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR---DLSTRRSLGYGYVNFSNAQEAARA 81
++YVGDL +S LY +F+ +G ++++++ + D + Y YV FS +EA A
Sbjct: 19 TVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQEEEALEA 78
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ LNF ++ K +RVM ++ ++ GNI IKNL D K LHDTFS FG ILSC
Sbjct: 79 VNKLNFFKVHDKEMRVMLYDKE-RIKSMDRGNIVIKNLSADCDSKTLHDTFSIFGEILSC 137
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINK 199
KVA + G+ KG+GFVQF N+ A+KA++ M ++ GH ++ K E++ +I
Sbjct: 138 KVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQMD------GHAIKVEKYEKNYKIKT 191
Query: 200 SK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
FTNV+ KN +TTE+ L++ F G ++S DG + FGF N+EN+ DA
Sbjct: 192 GSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQ 251
Query: 258 RAVEALNGKK-FDDK---EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+A++ L+GK F+ K +YV +AQ K +R L FE+ + NLY+ L
Sbjct: 252 KAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN--YKRNLYVTRL 309
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
+ E++++LFS +G I S V +D + +V FST +EAS A+ + N +
Sbjct: 310 PSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEVYID 369
Query: 373 SKPLYVALAQRKEDR 387
S + V + K +R
Sbjct: 370 SVKINVTYFKSKNER 384
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 142/279 (50%), Gaps = 20/279 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++ + +L A+ L+D F+ G+++S +V ++ S + G+G+V F N A +AL+
Sbjct: 109 NIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQN-SQGKCKGFGFVQFKNKNGARKALKF 167
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGA---GNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
++G I+V ++ + K+G+ N+F KN + L + F + G + S
Sbjct: 168 GTEMQMDGHAIKVEKYEKNYKI-KTGSRAFTNVFFKNFPSTTTEQQLKEIFMSIGKVSSF 226
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND----KQVYVGHFLRKQERDTEI 197
AT +G +G+GF ++N AQKAI++L+G + + + YV KQ+R +
Sbjct: 227 YFATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSL 286
Query: 198 NKS--KFT--------NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFG 246
+ + K + N+YV L + +E++++ F +YG I S V +D + K +
Sbjct: 287 SSAFEKLSMSGLNYKRNLYVTRLPSTYGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWA 346
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
+V F +D+A+ AVE N D + V + K+ERE
Sbjct: 347 YVCFSTADEASIAVEKGNEVYIDSVKINVTYFKSKNERE 385
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 192 ERDTEINKSKFTN---VYVKNLSESTTEEDLQKSFGEYGTITSA----VVMRDGDGKSKC 244
E+ ++I K+K N VYV +LS T E DL K F G+I + VM + + C
Sbjct: 4 EKASKIEKTKKENNCTVYVGDLSLKTVESDLYKIFSTVGSIITIKLVKPVMDNFPNYTTC 63
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+ +V F ++A AV LN K DKE V K+ + ++
Sbjct: 64 YAYVLFSQEEEALEAVNKLNFFKVHDKEMRVMLYDKERIKSMD----------------- 106
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL- 363
N+ IKNL D + L FS FG I SCKV ++ G +G GFV F A +AL
Sbjct: 107 RGNIVIKNLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALK 166
Query: 364 ----LEMNGKMV 371
++M+G +
Sbjct: 167 FGTEMQMDGHAI 178
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 24/192 (12%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR--DLSTRRSLGYGYVNFSNAQEAARA 81
T+++ + + T+ QL ++F +G+V S D R G+G+ N+ NA +A +A
Sbjct: 197 TNVFFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLR---GFGFANYENAADAQKA 253
Query: 82 LEMLN----FTPLNGKPIRVMYSHRD-----------PSLRKSGAG---NIFIKNLDKAI 123
++ L+ F +P V + L SG N+++ L
Sbjct: 254 IDELSGKDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLNYKRNLYVTRLPSTY 313
Query: 124 DHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ + + FS +G I+S V D + + K + +V F + A A+EK N + ++ ++
Sbjct: 314 GKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEVYIDSVKI 373
Query: 183 YVGHFLRKQERD 194
V +F K ER+
Sbjct: 374 NVTYFKSKNERE 385
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 204/378 (53%), Gaps = 23/378 (6%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V F N ++A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
L+ + IRVM P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEK---LNGMLLNDKQVYVGHF---LRKQERDTE 196
VAT +G+SKGYGFVQF +++A+K I+ L+G+LL ++ V + ++K E ++
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGE--SK 184
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ FTN ++KN +E +L + YG +TS +GK K F F NFEN + A
Sbjct: 185 KTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 257 ARAVEALN-------GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
A++ L+ G+ + +Y+ K Q+K ER EL+ FEQ M ++ NLY
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQ-MSMQGQSYK-KNLY 302
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
I N+ + E+L +F FG+ITS V D + + ++ +STPEEAS A+ N
Sbjct: 303 ITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEI 362
Query: 370 MVVSKPLYVALAQRKEDR 387
+ L VA + K +R
Sbjct: 363 YLDGNRLQVAYFKNKLER 380
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 36/298 (12%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I++ L L FS G +LS K+ S + FV F+NEE A++AI +
Sbjct: 16 IYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYK 74
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
L+++Q+ V ++K ER E N++VKNL E T +DL +F +G I S
Sbjct: 75 HYELHNRQIRV---MKKDERPPETG-----NIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVE---ALNGKKFDDKEWYVGKAQKKSERELELKH 290
V GKSK +GFV F+ A + ++ +L+G V EL
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVV-----------EL-- 173
Query: 291 QFEQNMKEAADKFQGA---NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
+ +K+ K A N +IKN + +L +L +G +TS +G +G
Sbjct: 174 -YNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKG 232
Query: 348 SGFVAFSTPEEASRALLEMNGKMV-------VSKPLYVALAQRKEDRRARLQAQFAQM 398
F F E A A+ ++G + Y+ QRKE+R L+ F QM
Sbjct: 233 FAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQM 290
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 66 GYGYVNFSNAQEAARALEMLNFT-PL------NGKPIRVMYSHRDPS----LRK------ 108
G+ + NF N + A A++ L+ T P G+ + R LRK
Sbjct: 232 GFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMS 291
Query: 109 ----SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
S N++I N+ + + L F FGNI S V D K Y ++ + E
Sbjct: 292 MQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEE 351
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A A+E+ N + L+ ++ V +F K ER E
Sbjct: 352 ASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 383
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 133/416 (31%), Positives = 198/416 (47%), Gaps = 41/416 (9%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N T S+YV +L +V+++ L++LF G + +++ RD R LG+ YV F N A
Sbjct: 14 NTTTTMSIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHAYVTFYNPDHA 73
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKS-------------GAGNIFIKNLDKAIDH 125
AL L T L G+ + + PS S A +F+++ +D
Sbjct: 74 DAALGALKETELGGQQVTCALTEEVPSSASSMSTPPSSAHSPIDPARAVFVRDTRDGVDA 133
Query: 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 185
+ G A L + F E A K +L+D+ +
Sbjct: 134 ATTKTALESLG-------AVSLQPKGPNAFVAVFPTAEEASK--------VLSDE---LA 175
Query: 186 HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245
+ RD K+ FTN++V+ LS TTEE L+ F +G +TS ++ D ++K F
Sbjct: 176 NLEISPVRDP---KTHFTNLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGF 232
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQG 305
GFVNFE DA AV AL+G + V +AQ K ER+ ELK +E N E +G
Sbjct: 233 GFVNFEEHRDAVTAVAALDGAELCGARISVSRAQSKVERQAELKRAYEANRIERLRNARG 292
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
NLYI NL+ +I++E+L+ FS FG ITS ++M D G S+G GFV F P+ AS A+ E
Sbjct: 293 TNLYITNLNPAINNERLRAYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDHASNAIAE 352
Query: 366 MNGKMVVSKPLYVALAQRKEDRRA------RLQAQFAQMRPVA-MASTVAPRMPMY 414
M+ + + L VA+A +K+ + A R PV M + MPM+
Sbjct: 353 MHNRPIEGNVLQVAIAHKKDPQSAPYSLGKRFPPSVGGAVPVVGMHGGIPGGMPMH 408
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 204/378 (53%), Gaps = 23/378 (6%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ ++YVG+L DS L+ +F+ +G+V+SV++ + S + +V F N ++A RA+
Sbjct: 13 SLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAI 70
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
L+ + IRVM P GNIF+KNL + K L D FS FG I+SCK
Sbjct: 71 REYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEK---LNGMLLNDKQVYVGHF---LRKQERDTE 196
VAT +G+SKGYGFVQF +++A+K I+ L+G+LL ++ V + ++K E ++
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGE--SK 184
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ FTN ++KN +E +L + YG +TS +GK K F F NFEN + A
Sbjct: 185 KTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKGFAFANFENHESA 244
Query: 257 ARAVEALN-------GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
A++ L+ G+ + +Y+ K Q+K ER EL+ FEQ M ++ NLY
Sbjct: 245 LNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQ-MSMQGQSYK-KNLY 302
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK 369
I N+ + E+L +F FG+ITS V D + + ++ +STPEEAS A+ N
Sbjct: 303 ITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEI 362
Query: 370 MVVSKPLYVALAQRKEDR 387
+ L VA + K +R
Sbjct: 363 YLDGNRLQVAYFKNKLER 380
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 36/298 (12%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I++ L L FS G +LS K+ S + FV F+NEE A++AI +
Sbjct: 16 IYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFENEEDAERAIREYK 74
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
L+++Q+ V ++K ER E N++VKNL E T +DL +F +G I S
Sbjct: 75 HYELHNRQIRV---MKKDERPPETG-----NIFVKNLPEDFTGKDLDDAFSMFGEIVSCK 126
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVE---ALNGKKFDDKEWYVGKAQKKSERELELKH 290
V GKSK +GFV F+ A + ++ +L+G V EL
Sbjct: 127 VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVV-----------EL-- 173
Query: 291 QFEQNMKEAADKFQGA---NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
+ +K+ K A N +IKN + +L +L +G +TS +G +G
Sbjct: 174 -YNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELLERYGKVTSLFFPVKDNGKPKG 232
Query: 348 SGFVAFSTPEEASRALLEMNGKMV-------VSKPLYVALAQRKEDRRARLQAQFAQM 398
F F E A A+ ++G + Y+ QRKE+R L+ F QM
Sbjct: 233 FAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQM 290
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 66 GYGYVNFSNAQEAARALEMLNFT-PL------NGKPIRVMYSHRDPS----LRK------ 108
G+ + NF N + A A++ L+ T P G+ + R LRK
Sbjct: 232 GFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQKGQRKEERAEELRKMFEQMS 291
Query: 109 ----SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164
S N++I N+ + + L F FGNI S V D K Y ++ + E
Sbjct: 292 MQGQSYKKNLYITNIPEGFGCEELGSIFKEFGNITSISVGVDGANSQKQYAYICYSTPEE 351
Query: 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A A+E+ N + L+ ++ V +F K ER E
Sbjct: 352 ASIAVERGNEIYLDGNRLQVAYFKNKLERMKE 383
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 3/176 (1%)
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
KNLDK+JD+KAL+D FSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGML
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 177 LNDKQVYVGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
LND++V+VG F ++ER+ + +FTNVY+KN E +E L++ FG +G S V
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
M D GKSK FGFV+FE +DA +AV +NGK+ + K+ YV +AQKK ER+ ELK
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELKR 175
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KNL +S + L F +G I S V+ D +G SK +GFV+FE + A RA+E +NG
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+D++ +VG+ + + ERE L + A +F N+YIKN + +DDE+LK+LF
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGAR--------AKEF--TNVYIKNFGEDMDDERLKELFG 109
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
FG S KVM D SG S+G GFV+F E+A +A+ EMNGK K +YV AQ+K +R
Sbjct: 110 XFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVER 169
Query: 388 RARLQ 392
+ L+
Sbjct: 170 QTELK 174
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89
+L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA+E +N
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 90 LNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN + + V R+ L R N++IKN + +D + L + F FG LS KV
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGARAKEFTNVYIKNFGEDMDDERLKELFGXFGPALSVKV 119
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
TD +G+SKG+GFV F+ E AQKA+ ++NG N KQ+YV +K ER TE+ +
Sbjct: 120 MTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVERQTELKR 175
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNLD SJD++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +MNG +
Sbjct: 1 KNLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 371 VVSKPLYVALAQRKEDRRARLQAQ 394
+ + ++V + +++R A L A+
Sbjct: 60 LNDRKVFVGRFKSRKEREAXLGAR 83
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF G +SV+V D S +S G+G+V+F
Sbjct: 81 GARAKEF--TNVYIKNFGEDMDDERLKELFGXFGPALSVKVMTDESG-KSKGFGFVSFER 137
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR 102
++A +A+ +N NGK I V + +
Sbjct: 138 HEDAQKAVXEMNGKEXNGKQIYVXRAQK 165
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 135/194 (69%), Gaps = 6/194 (3%)
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S VM D GKSK F FV+FE +DA +AV+ +NGK+ + K+ YVG+AQKK E + E KH
Sbjct: 15 SVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVEPQTEPKH 74
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ ++ ++QG NLY+KNLDD IDDE L++ FSPFG+ITS KVM + G S+G GF
Sbjct: 75 KFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTITSAKVMME-GGRSKGFGF 133
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVAMAST 406
V FS+PEEA++A+ EMNG+ V +KPLYVALAQ KE+ A L +Q+ Q +R V A
Sbjct: 134 VCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQYMQRMASVRAVPNA-V 192
Query: 407 VAPRMPMYPPGAWI 420
+ P P P G ++
Sbjct: 193 INPYQPAPPSGYFM 206
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 108/186 (58%), Gaps = 16/186 (8%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+D + L D F LS KV TD +G+SKG+ FV F+ E AQKA++++NG LN KQ+
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 183 YVGHFLRKQERDTE------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
YVG +K E TE I + + N+YVKNL + +E L+K F +GTIT
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGTIT 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
SA VM +G G+SK FGFV F + ++A +AV+ +NG+ K YV AQ K E L
Sbjct: 118 SAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTS 176
Query: 291 QFEQNM 296
Q+ Q M
Sbjct: 177 QYMQRM 182
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 37 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96
D +L DLF +SV+V D S + S G+ +V+F ++A +A++ +N LNGK I
Sbjct: 3 DERLKDLFRP---ALSVKVMTDESGK-SKGFRFVSFERHEDAQKAVDEMNGKELNGKQIY 58
Query: 97 VMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
V + + D R G N+++KNLD ID + L FS FG I
Sbjct: 59 VGRAQKKVEPQTEPKHKFEQMKQDTITRYQGV-NLYVKNLDDGIDDEHLRKEFSPFGTIT 117
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
S KV + G+SKG+GFV F + E A KA++++NG + K +YV K+E +
Sbjct: 118 SAKVMME-GGRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEE-----SP 171
Query: 200 SKFTNVYVKNLS 211
+ T+ Y++ ++
Sbjct: 172 AHLTSQYMQRMA 183
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE+LK LF P S KVM D SG S+G FV+F E+A +A+ EMNGK + K +
Sbjct: 1 MDDERLKDLFRP---ALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 377 YVALAQRKEDRRARLQAQFAQMR 399
YV AQ+K + + + +F QM+
Sbjct: 58 YVGRAQKKVEPQTEPKHKFEQMK 80
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/102 (87%), Positives = 98/102 (96%)
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
I DEKLK+LFSP+G+ITSCKVMRDPSG+S+GSGFVAFS PEEASRAL EMNGKMVVSKPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 377 YVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGA 418
YVALAQRKE+RRARLQAQF+QMRP+AMAS+VAPRMPMYPPG
Sbjct: 61 YVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGG 102
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 215 TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
++E L++ F YGTITS VMRD G SK GFV F N ++A+RA+ +NGK K Y
Sbjct: 2 SDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLY 61
Query: 275 VGKAQKKSERELELKHQFEQ 294
V AQ+K ER L+ QF Q
Sbjct: 62 VALAQRKEERRARLQAQFSQ 81
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
I + L + FS +G I SCKV D +G SKG GFV F N E A +A+ ++NG ++ K +
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 183 YVGHFLRKQERDTEINKSKFTNVYVKNLSEST 214
YV RK+ER + +++F+ + ++ S
Sbjct: 61 YVALAQRKEERRARL-QAQFSQMRPIAMASSV 91
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
++D +L +LF+ G + S +V RD S S G G+V FSN +EA+RAL +N + KP
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGV-SKGSGFVAFSNPEEASRALSEMNGKMVVSKP 59
Query: 95 IRVMYSHR 102
+ V + R
Sbjct: 60 LYVALAQR 67
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 113/143 (79%)
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS 316
A AVE +NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS
Sbjct: 2 AAAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 61
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDEKLK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPL
Sbjct: 62 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 121
Query: 377 YVALAQRKEDRRARLQAQFAQMR 399
Y+ALAQRKEDRRA LQA F+Q+R
Sbjct: 122 YIALAQRKEDRRAHLQALFSQIR 144
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEI------------NKSKFTNVYVKNLSESTT 215
A+EK+NG+ L D +YVG +K ER+ E+ KS+ N+Y+KNL +S
Sbjct: 4 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVD 63
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L++ F EYG +TS+ VM + G S+ FGFV + N ++A RA+ +NGK K Y+
Sbjct: 64 DEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 123
Query: 276 GKAQKKSERELELKHQFEQ 294
AQ+K +R L+ F Q
Sbjct: 124 ALAQRKEDRRAHLQALFSQ 142
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 57/90 (63%)
Query: 108 KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167
KS N+++KNLD ++D + L + FS +GN+ S KV + G S+G+GFV + N E A +
Sbjct: 47 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALR 106
Query: 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
A+ ++NG ++ K +Y+ RK++R +
Sbjct: 107 ALSEMNGKMIGRKPLYIALAQRKEDRRAHL 136
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LY+ +L+ +V D +L ++F++ G V S +V + S G+G+V +SN +EA RAL
Sbjct: 52 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSE 110
Query: 85 LNFTPLNGKPIRVMYSHR 102
+N + KP+ + + R
Sbjct: 111 MNGKMIGRKPLYIALAQR 128
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 139/188 (73%), Gaps = 1/188 (0%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
+G I+IKNL+++ID+KA++DTFSAFGNIL+C VA D +G S+GYGFVQFD+EE+A+ AIE
Sbjct: 127 SGKIYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIE 186
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
K+NG+L N ++V+V ++ +++R+ E ++F N+YVKN +E +E+++++ F YG IT
Sbjct: 187 KVNGILCNSQKVHVVKYIPRRDREQE-KATQFRNLYVKNFNEDFSEQNMKEMFEPYGRIT 245
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S +M D +G+SK FGFV FEN A AV ALNGK+ DK YV +A K ER+ E+
Sbjct: 246 SHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
Query: 291 QFEQNMKE 298
+ E+ ++
Sbjct: 306 KLEERKRQ 313
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 13/187 (6%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D G S+ +GFV F++ + A A+E +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G + ++ +V K + +RE E QF NLY+KN ++ ++ +K+
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFR-------------NLYVKNFNEDFSEQNMKE 236
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
+F P+G ITS K+M D G S+ GFVAF P+ A A++ +NGK + K LYVA A K
Sbjct: 237 MFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSK 296
Query: 385 EDRRARL 391
+R+ +
Sbjct: 297 IERQQEI 303
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V F + + A A+E +
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EHGNSRGYGFVQFDSEEAARAAIEKV 188
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KN ++ + + + F +G I S K
Sbjct: 189 NGILCNSQKVHVVKYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSHK 248
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
+ TD G+SK +GFV F+N +SA A+ LNG L DK +YV L K ER EIN+
Sbjct: 249 IMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALSKIERQQEINR 305
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 118/153 (77%), Gaps = 3/153 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV
Sbjct: 1 MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTT 215
F+ E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E
Sbjct: 60 HFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDME 119
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
+E L++ F ++G S VM D GKS+ FGFV
Sbjct: 120 DEKLREIFSKFGPALSIRVMTDDGGKSRSFGFV 152
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 11/162 (6%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG+ + + ERE E M A +F N+YIK
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE--------MGARAKEF--TNVYIK 112
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
N + ++DEKL+++FS FG S +VM D G SR GFV
Sbjct: 113 NFGEDMEDEKLREIFSKFGPALSIRVMTDDGGKSRSFGFVCL 154
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 13 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERA 70
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + ++ + L + FS F
Sbjct: 71 IEKMNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMEDEKLREIFSKF 130
Query: 136 GNILSCKVATDLNGQSKGYGFV 157
G LS +V TD G+S+ +GFV
Sbjct: 131 GPALSIRVMTDDGGKSRSFGFV 152
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +
Sbjct: 15 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEK 73
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQAQ 394
MNG ++ + ++V + +++R A + A+
Sbjct: 74 MNGMLLNDRKVFVGRFKSRKEREAEMGAR 102
>gi|296235783|ref|XP_002763047.1| PREDICTED: uncharacterized protein LOC100399785, partial
[Callithrix jacchus]
Length = 445
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Query: 14 GGANANQ-FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG N F SLYVGDL VT++ LY+ F+ G ++S+R+CRD TRRSLGY YVN+
Sbjct: 299 GGCEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNY 358
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
+A RALE LNF + G+P+R+M+S RDPSLRKSG GN+FIKNL K ID+KAL++ F
Sbjct: 359 QQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIF 418
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQF 159
SAFGNILSCKVA D G KGYGFV F
Sbjct: 419 SAFGNILSCKVACDEKG-PKGYGFVHF 444
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G ILS ++ D + +S GY +V + A++A+E
Sbjct: 311 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 370
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN ++ + V + +RD + KS NV++KNL ++ + L F +G I S
Sbjct: 371 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 426
Query: 232 AVVMRDGDGKSKCFGFVNFE 251
V D G K +GFV+F+
Sbjct: 427 CKVACDEKGP-KGYGFVHFQ 445
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S + RD +S + +VN++ DA RA+E
Sbjct: 311 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 370
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN + + S+R+ L+ K N++IKNL +ID++ L
Sbjct: 371 LNFDVIKGRPVRI----MWSQRDPSLR------------KSGVGNVFIKNLGKTIDNKAL 414
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
+FS FG+I SCKV D G +G GFV F
Sbjct: 415 YNIFSAFGNILSCKVACDEKG-PKGYGFVHF 444
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 298 EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFS 354
E F A+LY+ +L + + L + FSP G I S ++ RD I+R G +V +
Sbjct: 302 EGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRD--KITRRSLGYAYVNYQ 359
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL +N ++ +P+ + +QR R
Sbjct: 360 QPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLR 393
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/191 (49%), Positives = 139/191 (72%), Gaps = 2/191 (1%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
+G I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIE
Sbjct: 101 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 160
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
K+NGML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG IT
Sbjct: 161 KVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRIT 219
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELK 289
S +M D +G+S+ FGFV FEN A AV L+GK+ D+K YV +A K+ER+ E+
Sbjct: 220 SHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 279
Query: 290 HQFEQNMKEAA 300
+ E+ ++ A
Sbjct: 280 RKLEERKRQKA 290
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 164 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 210
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF P+ A A++ ++GK + +K LYVA A
Sbjct: 211 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 270
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 271 KAERQQEI 278
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 162
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 163 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 222
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F+N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 223 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 280
>gi|123445099|ref|XP_001311313.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121893117|gb|EAX98383.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 419
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 194/375 (51%), Gaps = 15/375 (4%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+VGDL V + + +LF + G S + + +V F + + A RAL +
Sbjct: 8 LFVGDLPGYVDGNFIKELFREYGNFPSGTITVKKHKSLDKSFAFVTFESHELARRALLEV 67
Query: 86 NFTPLNGKPIRVMYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N+T L+G PIR+++S DP+ + K + I +LD+ I+ LHD FS FG ++SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPATKRAIKKDFCTLIIFDLDEYIEAAQLHDIFSNFGEVVSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ NG+ +G G+V F EE A + L +N K + + + + +++E F
Sbjct: 126 IPLT-NGKPRGDGYVTFYKEEDAMRVKNDLAQASINGKPIQIVLYCKPTRKNSE---ETF 181
Query: 203 TNVYVKNL--SESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
TNV++K L T EDL K ++G + + + DG S FGF NF DA +AV
Sbjct: 182 TNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNPSIKFNDDGTSSEFGFCNFMYHQDAVKAV 241
Query: 261 EALNGKKF--DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
E+LNGK + E+ +AQ K+ER+ L Q + + ++ +G NLYIKN+D SI+
Sbjct: 242 ESLNGKMHISGEFEFVCCRAQTKAERQAFLAEQSAEFRRRLYEETRGRNLYIKNIDRSIN 301
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGI--SRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
DE+ ++ F FG + C + R+ S+G GFV F T E A AL + K L
Sbjct: 302 DEEFEEYFKQFGEVEKCLISREAQEPHESKGFGFVLFKTKEGAQNALKNTIITPLKGKIL 361
Query: 377 YVALAQRKEDRRARL 391
YV KE+R L
Sbjct: 362 YVNYFIMKEEREHIL 376
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 134/280 (47%), Gaps = 21/280 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L + DL+ + +QL+D+F+ G+VVS ++ L+ + G GYV F ++A R
Sbjct: 96 TLIIFDLDEYIEAAQLHDIFSNFGEVVSCKI--PLTNGKPRGDGYVTFYKEEDAMRVKND 153
Query: 85 LNFTPLNGKPIR-VMYSHRDPSLRKSGAGNIFIKNLDKAI--DHKALHDTFSAFGNILSC 141
L +NGKPI+ V+Y + N+FIK L ++ L FG ++
Sbjct: 154 LAQASINGKPIQIVLYCKPTRKNSEETFTNVFIKPLLVKYFKTNEDLAKLMKDFGEFVNP 213
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG-MLLNDKQVYVG----------HFLRK 190
+ + +G S +GF F + A KA+E LNG M ++ + +V FL +
Sbjct: 214 SIKFNDDGTSSEFGFCNFMYHQDAVKAVESLNGKMHISGEFEFVCCRAQTKAERQAFLAE 273
Query: 191 QE---RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD--GKSKCF 245
Q R +++ N+Y+KN+ S +E+ ++ F ++G + ++ R+ +SK F
Sbjct: 274 QSAEFRRRLYEETRGRNLYIKNIDRSINDEEFEEYFKQFGEVEKCLISREAQEPHESKGF 333
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
GFV F+ + A A++ K YV K ERE
Sbjct: 334 GFVLFKTKEGAQNALKNTIITPLKGKILYVNYFIMKEERE 373
>gi|162605986|ref|XP_001713508.1| polyadenylate-binding protein [Guillardia theta]
gi|13794428|gb|AAK39803.1|AF165818_11 polyadenylate-binding protein [Guillardia theta]
Length = 389
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 151/260 (58%), Gaps = 4/260 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVGDL ++ D L +F + ++ +R+C+D+ + SLGY YV F++ A +AL +
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 86 NF---TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
NF T L PIR+M+ + + S+RKSG GN+FIKNL K LH FS +G ILS K
Sbjct: 66 NFYSDTELFKTPIRIMWKNNNNSIRKSGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ D G S GYGFV + + A AI LNG L+++K + V HFL K +R+ + F
Sbjct: 126 IKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLNKSQRERISSCDLF 185
Query: 203 TNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
TN+YVKNL + +E+ + FG +G ITS + + K F ++NFEN +DA A+
Sbjct: 186 TNIYVKNLPVDKLSEKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAII 245
Query: 262 ALNGKKFDDKEWYVGKAQKK 281
+N +K K V KA K
Sbjct: 246 TMNNRKIAGKSLIVCKAINK 265
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 17/246 (6%)
Query: 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF-LRKQERDTEINK 199
++ D+ +G S GY +V F++ SA+KA+ +N +D +++ + + + I K
Sbjct: 34 RICKDIFSGNSLGYSYVYFNSYSSAKKALNDMN--FYSDTELFKTPIRIMWKNNNNSIRK 91
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
S + N+++KNL + + +DL F EYG I S+ + D +G S +GFV+++ DA A
Sbjct: 92 SGYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISA 151
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD-DSID 318
+ LNGK +K V KS+RE + D F N+Y+KNL D +
Sbjct: 152 INNLNGKLISNKMITVKHFLNKSQRE----------RISSCDLF--TNIYVKNLPVDKLS 199
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
++ + LF FG ITS + + I +G ++ F E+A A++ MN + + K L V
Sbjct: 200 EKVIFNLFGVFGKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIV 259
Query: 379 ALAQRK 384
A K
Sbjct: 260 CKAINK 265
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L++ +L N + L+ LF++ G+++S ++ D + SLGYG+V++ ++A A
Sbjct: 93 GYGNLFIKNLPYNFSPKDLHSLFSEYGEILSSKIKYD-NEGSSLGYGFVHYKEMKDAISA 151
Query: 82 LEMLNFTPLNGKPIRVMY----SHRDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSAF 135
+ LN ++ K I V + S R+ NI++KNL DK + K + + F F
Sbjct: 152 INNLNGKLISNKMITVKHFLNKSQRERISSCDLFTNIYVKNLPVDK-LSEKVIFNLFGVF 210
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S + N KG+ ++ F+N E A++AI +N + K + V + K + DT
Sbjct: 211 GKITSIFIPLWYNSIPKGFAYINFENHEDAEEAIITMNNRKIAGKSLIVCKAINKIKIDT 270
Query: 196 EINK 199
INK
Sbjct: 271 -INK 273
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEAL 263
+YV +L+ S + DL++ F + I+ + +D G S + +V F + A +A+ +
Sbjct: 6 LYVGDLNVSLKDIDLERIFRKDYEISGLRICKDIFSGNSLGYSYVYFNSYSSAKKALNDM 65
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + D E + K+ + K N + K NL+IKNL + + L
Sbjct: 66 NF--YSDTELF------KTPIRIMWK-----NNNNSIRKSGYGNLFIKNLPYNFSPKDLH 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
LFS +G I S K+ D G S G GFV + ++A A+ +NGK++ +K + V
Sbjct: 113 SLFSEYGEILSSKIKYDNEGSSLGYGFVHYKEMKDAISAINNLNGKLISNKMITVKHFLN 172
Query: 384 KEDR 387
K R
Sbjct: 173 KSQR 176
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/188 (50%), Positives = 138/188 (73%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFSAFGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FE+ A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 286
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 287 EERKRQKA 294
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 114/196 (58%), Gaps = 14/196 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 168 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 214
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF +P+ A A++ ++GK + +K LYVA A
Sbjct: 215 MFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 274
Query: 384 KEDRRARLQAQFAQMR 399
K +R+ + + + +
Sbjct: 275 KAERQQEINRKLEERK 290
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 166
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 167 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 226
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F++ +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 227 LMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 284
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV +EN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 113/196 (57%), Gaps = 14/196 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARLQAQFAQMR 399
K +R+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV +EN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 113/196 (57%), Gaps = 14/196 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARLQAQFAQMR 399
K +R+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 142/205 (69%), Gaps = 7/205 (3%)
Query: 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGF 156
++ S+ P RK I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGF
Sbjct: 103 IINSNSTPDSRK-----IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGF 157
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V FD EE+A+ AIEK+NGML N+++V+V F+ +++R+ E + F N+YVKNL E TE
Sbjct: 158 VHFDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLGEEFTE 216
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYV 275
+ L++ F YG ITS +M D +G+S+ FGFV +EN A AV L+GK+ D+K YV
Sbjct: 217 QHLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYV 276
Query: 276 GKAQKKSERELELKHQFEQNMKEAA 300
+A K+ER+ E+ + E+ ++ A
Sbjct: 277 ARALSKAERQQEINRKLEERKRQKA 301
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 14/196 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F+ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLGEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARLQAQFAQMR 399
K +R+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 6/192 (3%)
Query: 13 GGGANANQF-GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVN 71
GG N+N + +Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+
Sbjct: 101 GGIINSNSTPDSRKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVH 159
Query: 72 FSNAQEAARALEMLNFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKAL 128
F + A A+E +N N + + V+ RD K+ N+++KNL + + L
Sbjct: 160 FDTEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLGEEFTEQHL 219
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHF 187
+ F +G I S K+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV
Sbjct: 220 REMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARA 279
Query: 188 LRKQERDTEINK 199
L K ER EIN+
Sbjct: 280 LSKAERQQEINR 291
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV +EN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 293
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 294 EERKRQKA 301
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 110/188 (58%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 175 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 221
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVA+ P+ A A++ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 282 KAERQQEI 289
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 173
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV ++N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
+YIKNL+ SID++ + FS FG+I +C V +D G SRG GFV F + E A A+ ++N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
G + ++ ++V + DR F +
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNL 205
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+S RDP LRKSG GNIFIKN+D++ID+KAL+DT SAFGNILSCKV D NG SKGYGFV
Sbjct: 1 MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFV 59
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--KFTNVYVKNLSESTT 215
F+ +E+A +AIE +NGMLLND++V+VGHF ++ER E+ +FTNVY+KN SE
Sbjct: 60 HFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDID 119
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248
E L+ F E+G S VM D G S+ FGFV
Sbjct: 120 REKLKSIFSEFGKTLSVCVMTDESGCSRGFGFV 152
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 11/162 (6%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
+RD + KS N+++KN+ ES + L + +G I S V+ D +G SK +GFV+FE
Sbjct: 4 QRDPGLRKSGVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFE 62
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ A RA+E +NG +D++ +VG + + ER E+ A + N+YIK
Sbjct: 63 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKERMAEM----------GAKAMEFTNVYIK 112
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353
N + ID EKLK +FS FG S VM D SG SRG GFV
Sbjct: 113 NFSEDIDREKLKSIFSEFGKTLSVCVMTDESGCSRGFGFVCL 154
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +++ ++ + LYD + G ++S +V D S GYG+V+F + A RA
Sbjct: 13 GVGNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRA 70
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + + GA N++IKN + ID + L FS F
Sbjct: 71 IETMNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNVYIKNFSEDIDREKLKSIFSEF 130
Query: 136 GNILSCKVATDLNGQSKGYGFV 157
G LS V TD +G S+G+GFV
Sbjct: 131 GKTLSVCVMTDESGCSRGFGFV 152
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKN+D+SID++ L S FG+I SCKV+ D +G S+G GFV F T E A+RA+
Sbjct: 15 GNIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIET 73
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPV 401
MNG ++ + ++V + +++R A + A+ + V
Sbjct: 74 MNGMLLNDRKVFVGHFKSRKERMAEMGAKAMEFTNV 109
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 136/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA+++TFS FGNIL+C VA D G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FEN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 287
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 288 EERKRQKA 295
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + ++F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 169 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 215
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF P+ A A++ ++GK + +K LYVA A
Sbjct: 216 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALS 275
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 276 KAERQQEI 283
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +Y+ F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 167
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 168 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 227
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F+N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 228 LMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 285
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
+YIKNL+ SID++ + + FS FG+I +C V +D G SRG GFV F + E A A+ ++N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
G + ++ ++V + DR F +
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQEKATHFKNL 199
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA++DTFS FGNIL+C VA D +G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FE+ A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKL 283
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 284 EERKRQKA 291
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 14/188 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + +F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 165 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 211
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF +P+ A A++ ++GK + +K LYVA A
Sbjct: 212 MFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALS 271
Query: 384 KEDRRARL 391
K +R+ +
Sbjct: 272 KAERQQEI 279
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +YD F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEKV 163
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 164 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 223
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F++ +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 224 LMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 281
>gi|378756066|gb|EHY66091.1| hypothetical protein NERG_00787 [Nematocida sp. 1 ERTm2]
Length = 513
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 205/372 (55%), Gaps = 15/372 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGD+ + T+S L+ +F+++GQ+ +V + R +LS + Y YV F + A+E
Sbjct: 20 SIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYAYVTFFDEASVPTAIE 79
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
NF LNG IRVM ++ S+ + GNI IKNL K D++ L+DTF FG I+SCKV
Sbjct: 80 TFNFYELNGSQIRVMPLDKE-SVVNNREGNIVIKNLPKETDNQTLYDTFIIFGPIVSCKV 138
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDTEINKSK 201
+ + G G++Q+ + + A+ AI+ +N ++LN K++ + K+E+ E +
Sbjct: 139 VKNSLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKKLCAVQCVPNDKREKKRENVEKI 198
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTN+Y+KN + EE+++K EYG +TS V R G+ + F F N++ + A A+
Sbjct: 199 FTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAETGEMRGFAFANYKTHEMAEAAIL 258
Query: 262 ALNGKKF------DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
L+ K F + + YV +A+ KSER E F ++ + N+YI NL
Sbjct: 259 GLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFANPPEQEVRR----NIYITNLPG 314
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+++E + + FS +G I + K+ D +R G+V + E+A++A+ N +P
Sbjct: 315 DLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAEDAAKAVELANKSEYCGQP 373
Query: 376 LYVALAQRKEDR 387
L VA + K+ R
Sbjct: 374 LGVAFFKCKKLR 385
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 23/272 (8%)
Query: 36 TDSQ-LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
TD+Q LYD F G +VS +V ++ S G GY+ + + + A A++M+N LNGK
Sbjct: 118 TDNQTLYDTFIIFGPIVSCKVVKN-SLSECSGIGYIQYKDPKIAEVAIQMINKIMLNGKK 176
Query: 95 IRVMYSHRDPSLRKSGAG------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN 148
+ + + K NI++KN K ++ + + +G + S V
Sbjct: 177 LCAVQCVPNDKREKKRENVEKIFTNIYMKNFPKGVEEEEIKKKLEEYGELTSFFVPRAET 236
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLN------GMLLNDKQVYVGHFLRKQERDTEI----- 197
G+ +G+ F + E A+ AI L+ G + +YV K ER E
Sbjct: 237 GEMRGFAFANYKTHEMAEAAILGLHDKPFFGGNSGEGENLYVQRAKLKSERVEETAGYFA 296
Query: 198 ---NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ N+Y+ NL EED+ K F +YG I + + D ++ +G+V ++ ++
Sbjct: 297 NPPEQEVRRNIYITNLPGDLNEEDVVKYFSKYGPINTYKLGTDTKN-NRSYGYVFYQKAE 355
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
DAA+AVE N ++ + V + K REL
Sbjct: 356 DAAKAVELANKSEYCGQPLGVAFFKCKKLREL 387
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD--GDGKSKCFG 246
+K++++ +I + ++YV ++ STTE DL + F + G I + ++ R K KC+
Sbjct: 7 QKEKKEGQIGRQ--NSIYVGDIPTSTTESDLFQIFSKVGQIYTVIIPRKELSIVKDKCYA 64
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGA 306
+V F + A+E N + + + R + L + N +E
Sbjct: 65 YVTFFDEASVPTAIETFNFYELNGSQI----------RVMPLDKESVVNNRE-------G 107
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+ IKNL D++ L F FG I SCKV+++ G G++ + P+ A A+ +
Sbjct: 108 NIVIKNLPKETDNQTLYDTFIIFGPIVSCKVVKNSLSECSGIGYIQYKDPKIAEVAIQMI 167
Query: 367 NGKMVVSKPLYVALA---QRKEDRRARLQAQFAQM 398
N M+ K L ++E +R ++ F +
Sbjct: 168 NKIMLNGKKLCAVQCVPNDKREKKRENVEKIFTNI 202
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/188 (49%), Positives = 136/188 (72%), Gaps = 2/188 (1%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I+IKNL+++ID+KA+++TFS FGNIL+C VA D G S+GYGFV FD+EE+A+ AIEK+N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
GML N+++V+V F+ +++R+ E + F N+YVKNLSE TE+ L++ F YG ITS
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQE-KATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELKHQF 292
+M D +G+S+ FGFV FEN A AV L+GK+ D+K YV +A K+ER+ E+ +
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINRKL 290
Query: 293 EQNMKEAA 300
E+ ++ A
Sbjct: 291 EERKRQKA 298
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 14/196 (7%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+Y+KNL S + + ++F +G I + V +D +G S+ +GFV+F++ + A A+E +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
G ++++ +V K + +RE +E A F+ NLY+KNL + ++ L++
Sbjct: 172 GMLCNNQKVHVVKFIPRRDRE-----------QEKATHFK--NLYVKNLSEEFTEQHLRE 218
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383
+F P+G ITS K+M D G SR GFVAF P+ A A++ ++GK + +K LYVA A
Sbjct: 219 MFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALS 278
Query: 384 KEDRRARLQAQFAQMR 399
K +R+ + + + +
Sbjct: 279 KNERQQEINRKLEERK 294
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 5/178 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+Y+ +LE ++ + +Y+ F+ G +++ V +D S GYG+V+F + + A A+E +
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKD-EEGNSRGYGFVHFDSEEAARAAIEKV 170
Query: 86 NFTPLNGKPIRVM--YSHRDPSLRKSGA-GNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N N + + V+ RD K+ N+++KNL + + L + F +G I S K
Sbjct: 171 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 230
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERDTEINK 199
+ D G+S+ +GFV F+N +SA A+ L+G L D K +YV L K ER EIN+
Sbjct: 231 LMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVARALSKNERQQEINR 288
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 157/265 (59%), Gaps = 10/265 (3%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
L+G +++ K+++V F+ K ER +FTNVYV+NL E+ TE+ L + F +YG ++S
Sbjct: 35 LHGSMVDGKKLFVAKFINKDERAAMSWNQEFTNVYVENLIENVTEDILHRLFSQYGIVSS 94
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VVMRDG G+S+ GFVNF + ++A +AVE L G++ K +VGKA +K ER LK
Sbjct: 95 VVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLCGRQLGSKTLFVGKALRKDERMEMLKQH 154
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
F N A +N+Y+KNL +S++D +L+++F +G I S KVMR +G S+G GFV
Sbjct: 155 FRDN-SIAKPNMGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRHENGRSKGFGFV 213
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF-AQMRPVAMASTV-AP 409
FS EE+ +A +N V KPL V + +RKED RL F Q R A V +P
Sbjct: 214 CFSNREESKQAKRYLN---VDGKPLVVRVTERKEDTLKRLHQYFHGQPRHYTQAPLVPSP 270
Query: 410 RMPM--YPPGAWIWLSA--AACSWY 430
P+ Y P ++ +L S+Y
Sbjct: 271 TQPVLSYVPSSYGYLQPFHVGTSYY 295
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++++NL + + LH FS +G + S V D G+S+G GFV F + E+A+KA+E L
Sbjct: 67 NVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFL 126
Query: 173 NGMLLNDKQVYVGHFLRKQE---------RDTEINKSK--FTNVYVKNLSESTTEEDLQK 221
G L K ++VG LRK E RD I K ++N+YVKNLSES + L++
Sbjct: 127 CGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRLRE 186
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
FG YG I SA VMR +G+SK FGFV F N +++ +A LN D K V ++K
Sbjct: 187 IFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN---VDGKPLVVRVTERK 243
Query: 282 SERELELKHQF 292
E L+ HQ+
Sbjct: 244 -EDTLKRLHQY 253
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 16/165 (9%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +L NVT+ L+ LF+Q G V SV V RD RS G G+VNF + + A +A+E
Sbjct: 66 TNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRD-GMGRSRGLGFVNFCHLENAKKAVE 124
Query: 84 ML------NFTPLNGKPIR------VMYSH-RDPSLRKSGAG--NIFIKNLDKAIDHKAL 128
L + T GK +R ++ H RD S+ K G N+++KNL ++++ L
Sbjct: 125 FLCGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMNDTRL 184
Query: 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ F +G I+S KV NG+SKG+GFV F N E +++A LN
Sbjct: 185 REIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 229
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
G +++YV +L ++ D++L ++F + GQ+VS +V R RS G+G+V FSN +E+ +
Sbjct: 165 MGWSNMYVKNLSESMNDTRLREIFGRYGQIVSAKVMRH-ENGRSKGFGFVCFSNREESKQ 223
Query: 81 ALEMLNFTPLNGKPIRVMYSHR 102
A LN ++GKP+ V + R
Sbjct: 224 AKRYLN---VDGKPLVVRVTER 242
>gi|300120548|emb|CBK20102.2| unnamed protein product [Blastocystis hominis]
Length = 534
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/376 (34%), Positives = 194/376 (51%), Gaps = 13/376 (3%)
Query: 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99
L + F + G+V + V D +T++S YGYV+FS A+EA +ALE NF L GK +RVM
Sbjct: 5 LEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVMR 64
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQ 158
+ GN+F+KNL + +K L D FSA+GNILSCKVA D G+S YG+V
Sbjct: 65 QQLRFKQTCNPKGNLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVH 124
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
F + QK + +N ++ + +YV + K+ +DT S + YV N + TE+
Sbjct: 125 FSDPNVTQKVLADMNKDVVEEGAMYVMEY-EKRMKDTS---SDWVTCYVANFPTTLTEDG 180
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-----DDKEW 273
L+ FG+YGTI S + K GFV F N D A +AVE L + +
Sbjct: 181 LRDLFGKYGTINSVYIGYKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVL 240
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YV + Q + ER + E+ KE ++ +G LY+ D +I E+L+++F +G+I
Sbjct: 241 YVNRLQSREERASINQKILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIE 300
Query: 334 SCKVMRDPSGIS-RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
SC + RD + + GFV T E A A+ + L V LAQ +E+R L+
Sbjct: 301 SCSIARDKNTKELKPFGFVCMDTTENAQNAIRAFRESHDLK--LKVELAQTREERAKMLK 358
Query: 393 AQFAQMRPVAMASTVA 408
+ Q + V M V
Sbjct: 359 ERRKQTQGVVMQYPVV 374
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 131/289 (45%), Gaps = 22/289 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+V +L +T+ +L D F+ G ++S +V D T +SL YGYV+FS+ + L
Sbjct: 78 NLFVKNLPDLMTNKELLDKFSAYGNILSCKVAFDKETGKSLHYGYVHFSDPNVTQKVLAD 137
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N + + VM + S ++ N + L D F +G I S +
Sbjct: 138 MNKDVVEEGAMYVMEYEKRMKDTSSDWVTCYVANFPTTLTEDGLRDLFGKYGTINSVYIG 197
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK-----QVYVGHFLRKQERDTEINK 199
K GFV F N +SA KA+E L ++ + +YV ++ER + IN+
Sbjct: 198 YKRYNPQKIQGFVTFANHDSAVKAVEGLKDQVITVEGAEPMVLYVNRLQSREERAS-INQ 256
Query: 200 SKFTN-------------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCF 245
+YV ++ T E L++ F YG I S + RD + K K F
Sbjct: 257 KILEEKKKEEVERTKGRFLYVGFGDQTITLERLREIFQAYGNIESCSIARDKNTKELKPF 316
Query: 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
GFV + +++A A+ A ++ D + V AQ + ER LK + +Q
Sbjct: 317 GFVCMDTTENAQNAIRAF--RESHDLKLKVELAQTREERAKMLKERRKQ 363
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 218 DLQKSFGEYGTITSAVVMRDGDGK-SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
DL++ F +YG + + V+ D + K S+C+G+V+F +++A +A+E N KE V
Sbjct: 4 DLEEEFKKYGKVRATHVVLDKNTKQSRCYGYVDFSTAEEAEKALEGANFNILKGKEMRVM 63
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+ Q + ++ K NL++KNL D + +++L FS +G+I SCK
Sbjct: 64 RQQLRFKQTCNPK----------------GNLFVKNLPDLMTNKELLDKFSAYGNILSCK 107
Query: 337 VMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
V D +G S G+V FS P + L +MN +V +YV +++
Sbjct: 108 VAFDKETGKSLHYGYVHFSDPNVTQKVLADMNKDVVEEGAMYVMEYEKR 156
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/203 (46%), Positives = 135/203 (66%), Gaps = 5/203 (2%)
Query: 216 EEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
+E L+ FG++G S VM D G SK FGFV+F+ +D +AV+ +NGK+ + K+ Y+
Sbjct: 3 DERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYI 62
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
+A K +E + EL+ +FE ++ A ++QG NLY+KNLDD ID+ L++ FSPFG+IT
Sbjct: 63 SRAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTITGA 122
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
K M + G S G GFV FS+PEEA++A+ EMNG++V +KPL VALAQRKE+R+A L Q+
Sbjct: 123 KFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTNQY 181
Query: 396 AQMRPVAMASTVAPRMPMYPPGA 418
Q MAS A P+ P
Sbjct: 182 MQ----RMASVRAVPNPVILPAT 200
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 103/187 (55%), Gaps = 15/187 (8%)
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+D + L D F FG LS KV D G SKG+GFV F E QKA++++NG LN KQ+
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 183 YVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTI 229
Y+ + E TE+ + KF N+YVKNL + E LQK F +GTI
Sbjct: 61 YISRAHKTAEWQTEL-RCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGTI 119
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
T A M +G G S+ FGFV F + ++A +AV +NG+ K V AQ+K ER+ L
Sbjct: 120 TGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLT 178
Query: 290 HQFEQNM 296
+Q+ Q M
Sbjct: 179 NQYMQRM 185
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 25/192 (13%)
Query: 37 DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96
D +L DLF + G +SV+V D S G+G+V+F ++ +A++ +N LN K I
Sbjct: 3 DERLKDLFGKFGPALSVKVMMD-EGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIY 61
Query: 97 VMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNIL 139
+ +H+ D + R G N+++KNLD ID L FS FG I
Sbjct: 62 ISRAHKTAEWQTELRCKFEHMNQDRATRYQGV-NLYVKNLDDGIDEGCLQKEFSPFGTIT 120
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
K + G S+G+GFV+F + E A KA+ ++NG ++ K + V RK+ER +
Sbjct: 121 GAKFMME-GGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEER-----Q 174
Query: 200 SKFTNVYVKNLS 211
+ TN Y++ ++
Sbjct: 175 AHLTNQYMQRMA 186
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+DDE+LK LF FG S KVM D G S+G GFV+F E+ +A+ E+NGK + K +
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 377 YVALAQRKEDRRARLQAQFAQM 398
Y++ A + + + L+ +F M
Sbjct: 61 YISRAHKTAEWQTELRCKFEHM 82
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 126/175 (72%), Gaps = 3/175 (1%)
Query: 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFV 157
M+SHRDP+LR+SGAGN+++KNLD+ ID+KAL+DTFS FGNILSCKVA +G+S+G+GFV
Sbjct: 1 MWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFV 60
Query: 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEE 217
F+++ESA+ AI KLNGM + +K VYV F + ER+ K+ FTNVY+K++ S EE
Sbjct: 61 HFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKN-FTNVYIKHIPASWNEE 119
Query: 218 DLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+++ FG +G ITS V D G+ F FVN+ + A AVE ++GK ++E
Sbjct: 120 KIKEEFGAFGEITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDGKDVRNEE 172
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 94/179 (52%), Gaps = 15/179 (8%)
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
RD + +S NVYVKNL + + L +F +G I S V DGKS+ FGFV+FE+
Sbjct: 5 RDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFES 64
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
+ A A+ LNG + +K YV +K +ER F N+YIK+
Sbjct: 65 DESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKNF-------------TNVYIKH 111
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
+ S ++EK+K+ F FG ITS V DP G R FV ++ E+A A+ EM+GK V
Sbjct: 112 IPASWNEEKIKEEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDGKDV 168
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
N+Y+KNLD +ID++ L FS FG+I SCKV P G SRG GFV F + E A A+ ++
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 367 NGKMVVSKPLYVALAQRKEDR 387
NG + K +YVA ++ +R
Sbjct: 76 NGMQIGEKTVYVAPFKKTAER 96
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++YV +L+ N+ + LYD F+ G ++S +V +S G+G+V+F + + A A
Sbjct: 13 GAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVAL-TPDGKSRGFGFVHFESDESAEAA 71
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA----GNIFIKNLDKAIDHKALHDTFSAFGN 137
+ LN + K + V + + R G N++IK++ + + + + + F AFG
Sbjct: 72 IAKLNGMQIGEKTVYVA-PFKKTAERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGAFGE 130
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
I S V TD G+ + FV + E A+ A+E+++G
Sbjct: 131 ITSLAVQTDPKGRR--FAFVNYAEFEQARAAVEEMDG 165
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 111/140 (79%), Gaps = 1/140 (0%)
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317
+AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
DDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 378 VALAQRKEDRRARLQAQFAQ 397
VALAQRKE+R+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 86/143 (60%), Gaps = 15/143 (10%)
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSES 213
KA+E++NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDT 59
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+E L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K
Sbjct: 60 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 118
Query: 274 YVGKAQKKSERELELKHQFEQNM 296
YV AQ+K ER+ L +Q+ Q +
Sbjct: 119 YVALAQRKEERKAHLTNQYMQRV 141
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 109 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 142
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
+++ +LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA
Sbjct: 44 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 101
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
+A+ +N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 102 TKAVTEMNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 156
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 23/374 (6%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+VG+L ++ +L +LF G++V RV D T S GYG+V +S+ + AA A++
Sbjct: 229 TNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIK 288
Query: 84 MLNFTPLNGK--PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+N + G+ +R+ + S ++ +++ NL + LHD F +G + S
Sbjct: 289 HMNGRMVEGRMLEVRLAGAPSSGSTKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSV 348
Query: 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV--------GHFLRKQ- 191
KV D G SKGYGFV++ + + A AI +LNG L+ K++ V G Q
Sbjct: 349 KVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQA 408
Query: 192 --ERDTEINKS-KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGF 247
E D ++ K +NVYV+NL + L F YG +TSA V D G SK +GF
Sbjct: 409 ISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGF 468
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V F + DAA AV LNG + ++ V S E H + +KE +N
Sbjct: 469 VKFSDPHDAAHAVIELNGCLVEGRKILVRVRPPSSPVE---SHANNRTLKE----IDMSN 521
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+ N+ S++ KL +LF PFG IT V+ + S+G GFV F+ A+ A+ MN
Sbjct: 522 LYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMN 581
Query: 368 GKMVVSKPLYVALA 381
G ++ + + V +A
Sbjct: 582 GALIEGETISVRVA 595
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 190/400 (47%), Gaps = 32/400 (8%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
M +V+ G +G + + + LYV +L + + +L+DLF GQV SV+V RD +
Sbjct: 299 MLEVRLAGAPSSG---STKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHA 355
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV---------------MYSHRDPS 105
T S GYG+V +S+ Q AA A+ LN + GK + V S D
Sbjct: 356 TGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQ 415
Query: 106 LRKS-GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163
L K N++++NL ++ L + F +G + S KVA D +G SKGYGFV+F +
Sbjct: 416 LTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPH 475
Query: 164 SAQKAIEKLNGMLLNDKQVYV-----GHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
A A+ +LNG L+ +++ V + + + + +N+YV N+ S +
Sbjct: 476 DAAHAVIELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAK 535
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L + F +G IT A+V+ + SK +GFV F +S AA AV +NG + + V A
Sbjct: 536 LVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338
+ + A+ + LY+ NL ++ +KL LF PFG I +
Sbjct: 596 GLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMY 655
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
+ S FV ++ A++AL M+G ++ K L V
Sbjct: 656 AEYS-------FVLYADINSAAKALKHMDGYLIEGKRLVV 688
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 5/282 (1%)
Query: 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQ 158
+H + L++ N+F+ NL ++ L + F FG I+ +V D G SKGYGFVQ
Sbjct: 217 AHDEGKLKEGNGTNLFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQ 276
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+ + A +AI+ +NG ++ + + V L + + +YV NL E+
Sbjct: 277 YSDPRYAAEAIKHMNGRMVEGRMLEVR--LAGAPSSGSTKEMDMSKLYVCNLPLLLHEDK 334
Query: 219 LQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277
L F YG +TS VMRD G SK +GFV + + AA A+ LNG + K+ V
Sbjct: 335 LHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRV 394
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
A S + + + +N+Y++NL ++ +KL LF P+G +TS KV
Sbjct: 395 AAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKV 454
Query: 338 MRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
D SGIS+G GFV FS P +A+ A++E+NG +V + + V
Sbjct: 455 AMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILV 496
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 170/402 (42%), Gaps = 47/402 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ ++L +LF G++ V S S GYG+V F+++ AA A+
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQ-SNNSSKGYGFVKFADSHCAAEAVA 578
Query: 84 MLNFTPLNGKPIRVMYS-------------------HRDPSLRKSGAGNIFIKNLDKAID 124
M+N + G+ I V + + P + +++ NL + +
Sbjct: 579 MMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNC---RLYVTNLPQTMS 635
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L F FG I + + Y FV + + SA KA++ ++G L+ K++ V
Sbjct: 636 ADKLVSLFMPFGQIDRVVMYAE-------YSFVLYADINSAAKALKHMDGYLIEGKRLVV 688
Query: 185 ----------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
Q + + N+YV + + T E L + F YG I A
Sbjct: 689 KGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQAKK 748
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
G +G + + N+ AA A++ L+G + V A +E ++ + Q
Sbjct: 749 FDAG------YGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQ 802
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
+ NLY+ L + +KL +LF P G IT KV+ D +G+S+G GFV F
Sbjct: 803 TPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRF 862
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
+ A+ A+ MNG + L V A + A A F
Sbjct: 863 ADAYSAATAITHMNGYPLDGHMLAVRTAGVQPSDMASYMAHF 904
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSP 328
DD++ ++ K Q E H E +KE G NL++ NL S+ KL +LF P
Sbjct: 200 DDQDKHLCKRQ---ELSFSSAHD-EGKLKEG----NGTNLFVGNLPPSLASHKLIELFLP 251
Query: 329 FGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FG I +V+ D +G S+G GFV +S P A+ A+ MNG+MV + L V LA
Sbjct: 252 FGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRMLEVRLA 305
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G Q T+LYVG L VT +L +LF GQ+ +V D T S G+G+V F++
Sbjct: 805 GNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFAD 864
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPS 105
A AA A+ +N PL+G + V + PS
Sbjct: 865 AYSAATAITHMNGYPLDGHMLAVRTAGVQPS 895
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 30/200 (15%)
Query: 6 AQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL 65
AQ G + +LYVG + + VT QL +F G++V + +
Sbjct: 699 AQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQAK-------KFDA 751
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS-----------HRDPSL-----RKS 109
GYG + ++NA AA A++ L+ + G + V + R P R+
Sbjct: 752 GYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQI 811
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
N+++ L + L + F G I KV D G SKG+GFV+F + SA A
Sbjct: 812 DMTNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATA 871
Query: 169 IEKLNGMLLNDKQVYVGHFL 188
I +NG L+ GH L
Sbjct: 872 ITHMNGYPLD------GHML 885
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 203/416 (48%), Gaps = 29/416 (6%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SL + L T+SQL +LF +G S+ + RD + + LG+GYVNF + A A+
Sbjct: 10 SASLRIDHLPETATESQLAELFGAIGDFKSIHIIRDSISNKPLGHGYVNFEDVDSAIEAI 69
Query: 83 EMLNFTPLNG----KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
++L+ L G K I + ++ P+ + +G +F+KNL + +D+K + DTF++ G
Sbjct: 70 KVLDGMDLTGGNDDKGISLSFTPSQPASSAASSGTLFVKNLAEDVDNKTIFDTFASIGAP 129
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
S KV T G+S+G+ V +D+ + AQ+A+++L G+++N K + + + + E
Sbjct: 130 SSAKVMTTAEGKSRGFAIVHYDDPQLAQRALDELEGVVVNGKNIRLERYQTGAQLKEE-- 187
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
S+ VY+ L T++ L +G++ S V + D FV E+ R
Sbjct: 188 -SRKRTVYLAGLPHEVTDKQLIDLLSPFGSVIS-VKLYPKDKDRNPVAFVTMEDEQAVLR 245
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AVE LNG F+ + V + Q ++ + ++E D A LY++N+ + +
Sbjct: 246 AVEKLNGGSFERQRITVAQLQARNPATQSSGPTSARQVEETKD----ATLYVRNIYEDVQ 301
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL-----LEMNGKMVVS 373
D L + F FG ++ + R +G +RG FV F PE+ + AL LE+ G V
Sbjct: 302 DSDLSEAFGVFGPVSRVTIPRSANGDTRGFAFVVFENPEDRAHALAAGNMLEVGGGKV-- 359
Query: 374 KPLYVALAQRKEDRRARLQ--AQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAAC 427
Y A ++E LQ + F MRP A A P+ P G + + C
Sbjct: 360 --QYSAYRTKEE-----LQNMSSFG-MRPNAGAPAANPQCPPRQVGPTLPCTVYLC 407
>gi|47229360|emb|CAF99348.1| unnamed protein product [Tetraodon nigroviridis]
Length = 128
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 100/125 (80%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSC 141
NILSC
Sbjct: 124 NILSC 128
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSA 232
+F +G I S
Sbjct: 118 TFSAFGNILSC 128
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 21/135 (15%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G I S V RD +S + +VNF+ DA RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 263 LNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N FD + G+ + S+R+ L+ K N++IKNLD SID++
Sbjct: 72 MN---FDVIK---GRPVRIMWSQRDPSLR------------KSGVGNIFIKNLDKSIDNK 113
Query: 321 KLKQLFSPFGSITSC 335
L FS FG+I SC
Sbjct: 114 ALYDTFSAFGNILSC 128
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G+I S +V RD I+R G +V
Sbjct: 1 MNPSAASYPMASLYVGDLHPDVTEAMLYEKFSPAGAILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 189/345 (54%), Gaps = 31/345 (8%)
Query: 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-----GNIFIKNLD 120
Y +V F + ++A R +E N+T L+ + + +M + SG N+F+KN+
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLM-------ILTSGNVFPENANLFVKNIP 144
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
K K L++ F FG+I SCKV+ D NG+S+GYGFVQ++ ESA KAI L K
Sbjct: 145 KEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKFEGK 204
Query: 181 QVYVGHF---LRKQER-DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
+ + F LR Q+ D+ + S FTNV+VKN S TE L+ +YG I S +
Sbjct: 205 TLSISRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPL 264
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE-----------WYVGKAQKKSERE 285
+ + F VNFE ++DAA+AVE L+ K E +Y+ KA+++ ERE
Sbjct: 265 NEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPFYIQKAERRKERE 324
Query: 286 LELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
++ Q E ++K K NLYI ++ ++ +++++ LFS FG+I S K+ + S
Sbjct: 325 ETIRKQLEALSLKGINSK---NNLYIAHIPETFSEDEIRDLFSKFGTIVSIKLQKTSSEN 381
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
++ G++ F TPEEA+ A M+G ++ + L ++ + K +RRA
Sbjct: 382 NKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRA 426
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 140/296 (47%), Gaps = 40/296 (13%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L+V ++ T +LY++F G + S +V D S S GYG+V + + A +A+ L
Sbjct: 138 LFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVD-SNGESRGYGFVQYETVESADKAIADL 196
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGA----------GNIFIKNLDKAIDHKALHDTFSAF 135
GK + + S D SLR N+F+KN ++ L D +
Sbjct: 197 RDEKFEGKTLSI--SRFDRSLRDQKHSDSSSSTSSFTNVFVKNFPSSLTEAKLKDILEKY 254
Query: 136 GNILSCKVATDLNGQSKGYGF--VQFDNEESAQKAIEKLNGMLL------NDKQV----- 182
G I C + LN +S+ GF V F+ E A KA+E L+ + D V
Sbjct: 255 GPI--CSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPF 312
Query: 183 YVGHFLRKQERDTEINK-----------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
Y+ R++ER+ I K SK N+Y+ ++ E+ +E++++ F ++GTI S
Sbjct: 313 YIQKAERRKEREETIRKQLEALSLKGINSK-NNLYIAHIPETFSEDEIRDLFSKFGTIVS 371
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ + +K FG++ F+ ++AA A EA++G D+ + + + K+ER E
Sbjct: 372 IKLQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLDNSKLRISFYKAKNERRAE 427
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 123/262 (46%), Gaps = 35/262 (13%)
Query: 153 GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV-----GHFLRKQERDTEINKSKFTNVYV 207
Y FV F + E A++ +EK N L+D+++ + G+ + N++V
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLMILTSGNVFPEN-----------ANLFV 140
Query: 208 KNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK 267
KN+ + T + L + F ++G+I S V D +G+S+ +GFV +E + A +A+ L +K
Sbjct: 141 KNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEK 200
Query: 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
F+ GK S + L+ Q + + F N+++KN S+ + KLK +
Sbjct: 201 FE------GKTLSISRFDRSLRDQKHSDSSSSTSSF--TNVFVKNFPSSLTEAKLKDILE 252
Query: 328 PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-----------PL 376
+G I S + + G V F E+A++A+ ++ K + S P
Sbjct: 253 KYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQDSSVATCPF 312
Query: 377 YVALAQRKEDRRARLQAQFAQM 398
Y+ A+R+++R ++ Q +
Sbjct: 313 YIQKAERRKEREETIRKQLEAL 334
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 193 RDTEINKSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
R I SK V NLS T+ +L F + M+ D + FV F
Sbjct: 40 RMVSIQHSKSLVTVRCGNLSPKTSIAELVALFSREPVAIEDIKMKKNDLIQSSYAFVTFL 99
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ +DA R VE N D+E + L + F +N ANL++K
Sbjct: 100 SIEDAKRIVEKYNYTTLHDREMTLMI--------LTSGNVFPEN----------ANLFVK 141
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
N+ +KL ++F FGSI SCKV D +G SRG GFV + T E A +A+ ++ +
Sbjct: 142 NIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRDEKF 201
Query: 372 VSKPLYVALAQR 383
K L ++ R
Sbjct: 202 EGKTLSISRFDR 213
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 97/198 (48%), Gaps = 26/198 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+++V + +++T+++L D+ + G + S+ + + +G+ VNF A++AA+A+E
Sbjct: 231 TNVFVKNFPSSLTEAKLKDILEKYGPICSIYLPLN-EKSEPVGFACVNFEKAEDAAKAVE 289
Query: 84 MLNF-----------TPLNGKPIRVMYSHR----DPSLRK----------SGAGNIFIKN 118
L+ + + P + + R + ++RK + N++I +
Sbjct: 290 NLHNKHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEALSLKGINSKNNLYIAH 349
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
+ + + D FS FG I+S K+ + +K +G++ F E A A E ++G LL+
Sbjct: 350 IPETFSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLD 409
Query: 179 DKQVYVGHFLRKQERDTE 196
+ ++ + + K ER E
Sbjct: 410 NSKLRISFYKAKNERRAE 427
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 118/163 (72%), Gaps = 10/163 (6%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
M D GKS+ FGFV+FE +DA +A NG F + W QKK ER+ ELK +FEQ
Sbjct: 1 MTDDSGKSRGFGFVSFERHEDAQKAD---NG--FLKENWI----QKKVERQAELKRKFEQ 51
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS
Sbjct: 52 MKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFS 110
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 111 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 153
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 10/158 (6%)
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGML----LNDKQVYVGHFLRK--QERDTEIN 198
TD +G+S+G+GFV F+ E AQKA NG L + K RK Q + +
Sbjct: 2 TDDSGKSRGFGFVSFERHEDAQKAD---NGFLKENWIQKKVERQAELKRKFEQMKQDRMT 58
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ + N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV F + ++A +
Sbjct: 59 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATK 117
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 118 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 155
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 64 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLE-GGRSKGFGFVCFSSPEEATKAVTEM 122
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER ++ TN Y++ ++
Sbjct: 123 NGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 156
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 133/242 (54%), Gaps = 51/242 (21%)
Query: 10 NVNGGGANANQFGTT------------SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR 57
NV G +A+ G T SLYVG+LE VT++ L++LF+ +G V S+RVCR
Sbjct: 35 NVEGAQGDADTAGPTPNSAVPQPQASASLYVGELEPQVTEAMLFELFSHIGPVASIRVCR 94
Query: 58 DLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK 117
D TRRSLGY YVN++ + +ALE LN+T +NG+P R+M+S RDP+LRK+G GN+FIK
Sbjct: 95 DAVTRRSLGYAYVNYNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQGNVFIK 154
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVA----------------------TDLN------- 148
NLD AID+KALHDT S + K TD
Sbjct: 155 NLDVAIDNKALHDTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADK 214
Query: 149 ----------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
G+SKG+GFV F N E A KA+ +N ++++K +YV RK R ++
Sbjct: 215 KDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLE 274
Query: 199 KS 200
+S
Sbjct: 275 QS 276
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 56/228 (24%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV L TE L + F G + S V RD +S + +VN+ + D +A+E L
Sbjct: 63 LYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 122
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N + + + S+R+ L+ + N++IKNLD +ID++ L
Sbjct: 123 NYTVINGRPCRI----MWSQRDPALRKNGQ------------GNVFIKNLDVAIDNKALH 166
Query: 324 QLFSPFGSITSCK-----------------VMRDPS----------------------GI 344
S K V ++ S G
Sbjct: 167 DTISEGEDEDKVKEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGK 226
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
S+G GFV FS PE+A++A+ +MN +M+ +KPLYVALAQRK+ R+ +L+
Sbjct: 227 SKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLE 274
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 48/224 (21%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ L+ + L + FS G + S +V D + +S GY +V ++ +KA+E+L
Sbjct: 63 LYVGELEPQVTEAMLFELFSHIGPVASIRVCRDAVTRRSLGYAYVNYNTTSDGEKALEEL 122
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE------- 225
N ++N + + +RD + K+ NV++KNL + + L + E
Sbjct: 123 NYTVINGRPCRI----MWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTISEGEDEDKV 178
Query: 226 -----------YGTITSAVVMRDGD---------------------GKSKCFGFVNFENS 253
+ V D + GKSK FGFV F N
Sbjct: 179 KEEPKEGAEEETPAPEAEVKKEDSETDAESQEAADKKDAKKGDKKLGKSKGFGFVCFSNP 238
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
+DA +AV +N + D+K YV AQ+K R K+Q EQ+++
Sbjct: 239 EDATKAVADMNQRMIDNKPLYVALAQRKDVR----KNQLEQSIQ 278
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEASRA 362
A+LY+ L+ + + L +LFS G + S +V RD ++R G +V ++T + +A
Sbjct: 61 ASLYVGELEPQVTEAMLFELFSHIGPVASIRVCRD--AVTRRSLGYAYVNYNTTSDGEKA 118
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRR 388
L E+N ++ +P + +QR R
Sbjct: 119 LEELNYTVINGRPCRIMWSQRDPALR 144
>gi|402466517|gb|EJW01988.1| hypothetical protein EDEG_03560 [Edhazardia aedis USNM 41457]
Length = 571
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 152/252 (60%), Gaps = 7/252 (2%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD--LSTRRSLGYGYVNFSNAQEAARAL 82
++YVGDL D+ L+ LF+ G V+S+++ + L + SL Y YVN+ N+ A +A+
Sbjct: 7 TVYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAV 66
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLR--KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
+ LNF L+G IRVM ++ +L+ K G NI +KNL + D+K L+DTFS FG+I+S
Sbjct: 67 QNLNFAELHGTQIRVMLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDIIS 126
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
KVA D + KG+GFV + ++ S +KAI +G +N + V FLRK++R E +K
Sbjct: 127 SKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVEKDKI 186
Query: 201 K--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+ FTN Y+KN +EE L++ YG ITS VV R+ D K F F NF++ A +
Sbjct: 187 EELFTNCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAFCNFKDHVSAKK 245
Query: 259 AVEALNGKKFDD 270
A+E L+ +D
Sbjct: 246 AIEDLHDLSIED 257
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 126/257 (49%), Gaps = 16/257 (6%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKG---YGFVQFDNEESAQKAIE 170
+++ +L+ LH FS G +LS K+ + N +S G Y +V ++N + A KA++
Sbjct: 8 VYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQ 67
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
LN L+ Q+ V L ++++ + K N+ VKNL S + L +F +G I
Sbjct: 68 NLNFAELHGTQIRV--MLYNKQKNLKGQKIGKYNIIVKNLPVSCDNKTLYDTFSVFGDII 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ V D + K K FGFV +++ +A+ +G + V K +K +R +E K
Sbjct: 126 SSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKFLRKEDRVVE-KD 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ E+ N YIKN + +E+LK++ + +G ITS V R+ +G F
Sbjct: 185 KIEELF---------TNCYIKNFG-GLSEEQLKEICANYGEITSFVVPRNADNSLKGFAF 234
Query: 351 VAFSTPEEASRALLEMN 367
F A +A+ +++
Sbjct: 235 CNFKDHVSAKKAIEDLH 251
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 186/408 (45%), Gaps = 47/408 (11%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ G ++ V +L + + LYD F+ G ++S +V D S + G+G+V + +
Sbjct: 94 KIGKYNIIVKNLPVSCDNKTLYDTFSVFGDIISSKVAVD-SENKPKGFGFVCYKDKMSVK 152
Query: 80 RALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGA----GNIFIKNLDKAIDHKALHDTFS 133
+A+ + + T +NG ++V D + K N +IKN + + L + +
Sbjct: 153 KAILLAHGTNMNGNMLKVAKFLRKEDRVVEKDKIEELFTNCYIKNFG-GLSEEQLKEICA 211
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
+G I S V + + KG+ F F + SA+KAIE L+ + + D + K+
Sbjct: 212 NYGEITSFVVPRNADNSLKGFAFCNFKDHVSAKKAIEDLHDLSIEDICEKFDIKISKRLS 271
Query: 194 DTEINKSKFTNVYVK-------------NLSEST---TEEDLQKSFGEYGTITSAVVMRD 237
D E ++K N K N ES T D QK + ++ + +
Sbjct: 272 DAEGEENKNLNSSNKYKLSDDESSSTSENKEESKGKKTNIDDQKEDLKSENESNNEISNN 331
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF-EQNM 296
GKS NS D A E L ++ +Y+ +AQ + ER H+F ++ +
Sbjct: 332 NTGKSN-----ESTNSSDLNAAFENLKITTVEN--FYIQRAQTRQER-----HEFLKEFI 379
Query: 297 KEAADKFQG--ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF--VA 352
K+AA++ NLYI L + ++ + ++FS G+IT+ K+ D I+ G F +
Sbjct: 380 KKAAEENLSYKRNLYITTLPPTASEKDVLEIFSKHGTITNFKLKSD---INTGLKFCYIC 436
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRP 400
+ TPEEA AL N ++ L V+ + K++R+ + + A++ P
Sbjct: 437 YKTPEEALIALERGNETILDGHKLNVSFFKTKKERQ---EDKIAKIEP 481
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK---CFGFVNFENSDDAARAVE 261
VYV +L+ T + DL + F GT+ S ++ + + +S C+ +VN+ENSD A +AV+
Sbjct: 8 VYVGDLNPLTLDTDLHRLFSTQGTVLSIKMIHNPNLESTGSLCYAYVNYENSDCALKAVQ 67
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LN + + V K ++N+K K N+ +KNL S D++
Sbjct: 68 NLNFAELHGTQIRVMLYNK------------QKNLK--GQKIGKYNIIVKNLPVSCDNKT 113
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L FS FG I S KV D +G GFV + +A+L +G + L VA
Sbjct: 114 LYDTFSVFGDIISSKVAVDSENKPKGFGFVCYKDKMSVKKAILLAHGTNMNGNMLKVAKF 173
Query: 382 QRKEDR 387
RKEDR
Sbjct: 174 LRKEDR 179
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 146/246 (59%), Gaps = 28/246 (11%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEIN-KSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
++GMLLN V+VG F +E++ E+ ++K + V G +
Sbjct: 1 MDGMLLNGLNVFVGRFRSPKEQEAELGARAKESKV---------------------GPAS 39
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V+ D GKSK FGFV+FE +D A++ +NGK+F + Y+ A KK E + ELK
Sbjct: 40 SVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVEEQTELKC 98
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+FEQ ++ ++QGAN+ +KNLD+SIDDE+L++ FSPFG I S VM + G S+ GF
Sbjct: 99 KFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMME-GGCSKRFGF 157
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR 410
V FS+PEE ++A+ MNGK+V SKPL+VALAQ KE R A Q+ Q MAS A
Sbjct: 158 VCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQ----KMASVRAVP 213
Query: 411 MPMYPP 416
P+ P
Sbjct: 214 HPVINP 219
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
S G S KV TD G+SKG+GFV F+ E Q A++ +NG + Q Y+ +K E
Sbjct: 33 SKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKVE 91
Query: 193 RDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
TE+ K KF NV VKNL ES +E LQK F +G I SA VM +G
Sbjct: 92 EQTEL-KCKFEQMKQDRITRYQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG- 149
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
G SK FGFV F + ++ A+AV A+NGK K +V AQ K +R +Q+ Q M
Sbjct: 150 GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQKM 206
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 26/184 (14%)
Query: 45 NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-- 102
+++G SV+V D +S G+G+V+F ++ A++ +N +G + + +
Sbjct: 33 SKVGPASSVKVITD-EGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYICLAPKKV 90
Query: 103 ---------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
D R GA N+ +KNLD++ID + L FS FG I S V +
Sbjct: 91 EEQTELKCKFEQMKQDRITRYQGA-NVCVKNLDESIDDERLQKEFSPFGIINSANVMME- 148
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYV 207
G SK +GFV F + E KA+ +NG ++ K ++V K++R + FTN Y+
Sbjct: 149 GGCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQR-----LAHFTNQYM 203
Query: 208 KNLS 211
+ ++
Sbjct: 204 QKMA 207
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 108/135 (80%), Gaps = 1/135 (0%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQ
Sbjct: 61 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 383 RKEDRRARLQAQFAQ 397
RKE+R+A L Q+ Q
Sbjct: 120 RKEERQAHLTNQYMQ 134
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 15/138 (10%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+NG LN KQ+YVG +K ER TE+ K KF N+YVKNL + +E
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 59
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F +GTITSA VM +G G+SK FGFV F + ++A +AV +NG+ K YV A
Sbjct: 60 LRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 118
Query: 279 QKKSERELELKHQFEQNM 296
Q+K ER+ L +Q+ Q M
Sbjct: 119 QRKEERQAHLTNQYMQRM 136
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 45 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER + TN Y++ ++
Sbjct: 104 NGRIVATKPLYVALAQRKEERQAHL-----TNQYMQRMA 137
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+
Sbjct: 44 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVT 101
Query: 84 MLNFTPLNGKPIRVMYSHR 102
+N + KP+ V + R
Sbjct: 102 EMNGRIVATKPLYVALAQR 120
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 178/351 (50%), Gaps = 66/351 (18%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
L+K GN++++ L L FS +G ++SCK+ D G SKGYGF+ F + A
Sbjct: 89 LKKQLPGNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDDFGVSKGYGFINFADRIEA 148
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
QKAI+ LNG+ ++ ++V H + K++R + E+ K K+TN+YVKN + T+E L + F
Sbjct: 149 QKAIDNLNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVF 208
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY---VGKAQK 280
G+YG + S + + ++ + F+NF++ +DA RA E L+G F+ Y +GKA++
Sbjct: 209 GQYGDVESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDG--FEIAPGYRLQLGKAER 266
Query: 281 KSER-----------ELELKHQFEQNMKE--------------------------AADKF 303
+ +R L + Q+ E A ++
Sbjct: 267 RKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQY 326
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------GI 344
Q +NLYI +L D+ L +LF+PFG I S K+M P G
Sbjct: 327 QDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGR 386
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMV-VSKPLYVALAQRKEDR--RARLQ 392
SRG GFV F+ P +AS+AL+ MNG V S L V+ AQRKE++ + RL
Sbjct: 387 SRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLH 437
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 138/300 (46%), Gaps = 36/300 (12%)
Query: 124 DHKALHDTFSAFGNI-----LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178
D L + + F N ++C+V N +S F +F+ ++ +K E L +
Sbjct: 21 DSAVLENLLAVFKNTYNYPEVNCEVLKG-NSESPKTVFARFEEKDHFEKFKEFLEQRDIE 79
Query: 179 DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
+ V H L+KQ N+YV+ L +TT +DL + F YG + S ++ D
Sbjct: 80 YEHVATEHELKKQLP---------GNLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYDD 130
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNM 296
G SK +GF+NF + +A +A++ LNG D +V K +R ELE++
Sbjct: 131 FGVSKGYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRDRLKELEMR------- 183
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356
K + NLY+KN D + EKL Q+F +G + S + + +RG F+ F +
Sbjct: 184 -----KLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSH 238
Query: 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPP 416
E+A RA ++G + P Y + E R+ R+Q Q +P + P P Y P
Sbjct: 239 EDAVRAQENLDGFEIA--PGYRLQLGKAERRKDRMQNQMNSYKPNYL-----PFQPQYMP 291
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 78/348 (22%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYV L T L +F++ G +VS ++ D S GYG++NF++ EA +A++
Sbjct: 96 NLYVRGLLPTTTSDDLVRIFSRYGALVSCKIIYD-DFGVSKGYGFINFADRIEAQKAIDN 154
Query: 85 LNFTPLNGKPIRVMY--SHRDP----SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
LN ++G + V + S RD +RK N+++KN + + L F +G++
Sbjct: 155 LNGVNVDGNHLFVNHHISKRDRLKELEMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDV 214
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-------------------LLND 179
S + ++GY F+ F + E A +A E L+G + N
Sbjct: 215 ESVFLPQGTGNHNRGYAFINFKSHEDAVRAQENLDGFEIAPGYRLQLGKAERRKDRMQNQ 274
Query: 180 KQVYVGHFLRKQERDTEINKSKFTNVYV-------KNLSESTT----------------- 215
Y ++L Q + N+Y NL + T
Sbjct: 275 MNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIVSPDSNLISTATGLPIAGPQYQDSNLYII 334
Query: 216 -------EEDLQKSFGEYGTITSAVVM-------------------RDGDGKSKCFGFVN 249
++DL + F +G I SA +M + +G+S+ FGFV
Sbjct: 335 HLPLEFKDQDLYELFAPFGQIMSAKIMTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVC 394
Query: 250 FENSDDAARAVEALNGKKFDDKEWY-VGKAQKKSER-ELELKHQFEQN 295
F DA++A+ ++NG + DD V AQ+K + E H + QN
Sbjct: 395 FNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLHHYNQN 442
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 74/246 (30%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+LYV + ++T +L +F Q G V SV + + + + GY ++NF + ++A RA E
Sbjct: 188 TNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQG-TGNHNRGYAFINFKSHEDAVRAQE 246
Query: 84 ML--------------------------------NFTPLNGKPIRVMYSHR--------- 102
L N+ P + + H
Sbjct: 247 NLDGFEIAPGYRLQLGKAERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNLYPSFIV 306
Query: 103 --DPSLRKSGAG-----------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT---- 145
D +L + G N++I +L + L++ F+ FG I+S K+ T
Sbjct: 307 SPDSNLISTATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKIMTYPPN 366
Query: 146 ---------------DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
G+S+G+GFV F+ A KA+ +NG ++D V F ++
Sbjct: 367 DSAVIDEGEEDTESKSREGRSRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQR 426
Query: 191 QERDTE 196
+E E
Sbjct: 427 KENKFE 432
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 383 RKEDRRARLQAQFAQ 397
RKE+R+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++ +E
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 59
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K YV A
Sbjct: 60 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 118
Query: 279 QKKSERELELKHQFEQNM 296
Q+K ER+ L +Q+ Q +
Sbjct: 119 QRKEERKAHLTNQYMQRV 136
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+
Sbjct: 44 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 101
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
+N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 102 EMNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 151
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNLDD+IDDEKL
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 60
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V SKPLYVALAQ
Sbjct: 61 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 119
Query: 383 RKEDRRARLQAQFAQ 397
RKE+R+A L Q+ Q
Sbjct: 120 RKEERKAHLTNQYMQ 134
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEED 218
+NG ++ K ++VG +K ER E+ K KF N+Y+KNL ++ +E
Sbjct: 1 MNGKEISGKIIFVGRAQKKVERQAEL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 59
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV +NG+ K YV A
Sbjct: 60 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 118
Query: 279 QKKSERELELKHQFEQNM 296
Q+K ER+ L +Q+ Q +
Sbjct: 119 QRKEERKAHLTNQYMQRV 136
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 45 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 103
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 104 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 137
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+
Sbjct: 44 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 101
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
+N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 102 EMNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 151
>gi|331243001|ref|XP_003334145.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313135|gb|EFP89726.1| hypothetical protein PGTG_15382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 149/268 (55%), Gaps = 11/268 (4%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL AN+T+ +L +F+Q V+SV++ S + Y Y+ +S+A + A+
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKGPRAYAYIAYSSADKVDEAIR 88
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N T GKP RVM R ++ N+F+++L A+ A HDTF+ FG ILS ++
Sbjct: 89 EYNHTKFAGKPCRVMKPKRG-IVKGPPEANVFVQDLPLALSALAFHDTFAEFGEILSSRL 147
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN----DKQVYVGHFLRKQERDTEINK 199
+ D SKGYGF+Q+ E AQ AI + NG LL+ +K + F++K + ++
Sbjct: 148 SVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLDVAGGEKPIRTSIFVKKDAPSSPTSR 207
Query: 200 S---KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+ +F N++ KNL T E + ++ +YG ITSAV+ D DGK F +F+N DA
Sbjct: 208 AAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTAFASFQNHSDA 267
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSER 284
R ++A K D E Y +A K+ER
Sbjct: 268 VRVIKATQRKGPD--EVYAVRALSKAER 293
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 14/254 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKV---ATDLNGQSKGYGFVQFDNEESAQKAI 169
++++ +L I + L FS +LS ++ + + G + Y ++ + + + +AI
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKG-PRAYAYIAYSSADKVDEAI 87
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
+ N K V K +R + NV+V++L + + +F E+G I
Sbjct: 88 REYNHTKFAGKPCRV----MKPKRGI-VKGPPEANVFVQDLPLALSALAFHDTFAEFGEI 142
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S+ + D + SK +GF+ + + A A+ NG D V +K + +K
Sbjct: 143 LSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLLD-----VAGGEKPIRTSIFVK 197
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+ A + NL+ KNL I E K +S +G ITS + D G G+
Sbjct: 198 KDAPSSPTSRAAAREFKNLFFKNLPADITLEAFKATWSKYGVITSAVLTVDEDGKPTGTA 257
Query: 350 FVAFSTPEEASRAL 363
F +F +A R +
Sbjct: 258 FASFQNHSDAVRVI 271
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVM---RDGDGKSKCFGFVNFENSDDAARAV 260
+VYV +L + TEE+L K F + + S + R G + + ++ + ++D A+
Sbjct: 29 SVYVGDLPANITEEELIKVFSQASPVLSVQIKFPSRSVKG-PRAYAYIAYSSADKVDEAI 87
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
N KF K R ++ K + EA N+++++L ++
Sbjct: 88 REYNHTKFAGKPC----------RVMKPKRGIVKGPPEA-------NVFVQDLPLALSAL 130
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
F+ FG I S ++ D +S+G GF+ ++T E+A A+ E NG ++
Sbjct: 131 AFHDTFAEFGEILSSRLSVDRENVSKGYGFIQYATVEQAQAAIAETNGSLL 181
>gi|14571650|emb|CAC42811.1| Poly(A)-binding protein cytoplasmic 5 [Cricetulus griseus]
Length = 177
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL VT+ LY F G + R+CRD T LGYGYVNF +A AL +NF
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIK+LDK+ID++ L FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
NG SKGY +V FD+ +A +AI +NG+ LN++QVYV
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC-FGFVNFENSDDAARAVEALNG 265
V +L TE+ L K F G + + RD S +G+VNF DA A+ +N
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL 325
+ K + + +Q K N++IK+LD SID+ L L
Sbjct: 82 DLINGKPFRLMWSQPDDRLR----------------KSGVGNIFIKHLDKSIDNRTLFYL 125
Query: 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
FS FG+I SCKV+ D +G S+G +V F + A+RA+ MNG + ++ +YV
Sbjct: 126 FSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYV 177
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR-GSGFVAFSTPEEASRALLEMNG 368
+ +L + ++ L + F P G + ++ RDP S G G+V F P +A AL MN
Sbjct: 22 VGDLGPEVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 369 KMVVSKPLYVALAQRKEDRR 388
++ KP + +Q + R
Sbjct: 82 DLINGKPFRLMWSQPDDRLR 101
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/88 (87%), Positives = 85/88 (96%)
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ITSCKVMRDPSGISRGSGFVAFSTPEE++RAL EMNGKMV+SKPLYVALAQRKE+RRAR
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 391 LQAQFAQMRPVAMASTVAPRMPMYPPGA 418
LQAQF+QMRPVAM ++APRMPMYPPGA
Sbjct: 61 LQAQFSQMRPVAMPPSIAPRMPMYPPGA 88
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
TITS VMRD G S+ GFV F +++ARA+ +NGK K YV AQ+K ER
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 288 LKHQFEQ 294
L+ QF Q
Sbjct: 61 LQAQFSQ 67
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I SCKV D +G S+G GFV F E + +A+ ++NG ++ K +YV RK+ER
Sbjct: 1 TITSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRAR 60
Query: 197 INKSKFTNV 205
+ +++F+ +
Sbjct: 61 L-QAQFSQM 68
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 161/291 (55%), Gaps = 12/291 (4%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166
R GNIF+KNL ++ K L D FS FG I+SCKVAT G+SKGYGFVQF +++A+
Sbjct: 6 RPPETGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAK 65
Query: 167 KAIE---KLNGMLLNDKQVYVGHFLRKQER-DTEINKSKFTNVYVKNLSESTTEEDLQKS 222
K I+ LNG++L ++ V + ++ +++ + FTN ++KN TTE++L +
Sbjct: 66 KVIKNFNNLNGLMLGGNKIAVELYNPDMKKGESKKVSTMFTNCFIKNFPVDTTEKELLEL 125
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK-KFDD-----KEWYVG 276
YG +TS DGK K F F NFE+ + A A+ L+G FD + +Y+
Sbjct: 126 LVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQ 185
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
K Q+K ER EL+ FEQ + ++ NLYI N+ + E+L +F FGSITS
Sbjct: 186 KGQRKEERAEELRKMFEQ-LSMQGQSYR-KNLYITNIPEGFGAEELNNIFKEFGSITSMS 243
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
V D + + ++ +STPEEAS A+ N + L V+ + K +R
Sbjct: 244 VGIDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLER 294
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 130/288 (45%), Gaps = 29/288 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +++V +L + T L D F+ G++VS +V +S GYG+V F + A + +
Sbjct: 10 TGNIFVKNLPESFTSKDLDDAFSMFGEIVSCKVA-TTPQGKSKGYGFVQFKEKKAAKKVI 68
Query: 83 EMLNFTPLNGKPI---RVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTF 132
+ NF LNG + ++ +P ++K + N FIKN K L +
Sbjct: 69 K--NFNNLNGLMLGGNKIAVELYNPDMKKGESKKVSTMFTNCFIKNFPVDTTEKELLELL 126
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND------KQVYVGH 186
+G + S +G+ KG+ F F++ ESA AI L+G D + Y+
Sbjct: 127 VRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSSKDGGEPFYIQK 186
Query: 187 FLRKQERDTEINK----------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236
RK+ER E+ K S N+Y+ N+ E E+L F E+G+ITS V
Sbjct: 187 GQRKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEGFGAEELNNIFKEFGSITSMSVGI 246
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
DG K + ++ + ++A+ AVE N D V + K ER
Sbjct: 247 DGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVSYFKNKLER 294
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+RK ER E N++VKNL ES T +DL +F +G I S V GKSK +GF
Sbjct: 1 MRKDERPPETG-----NIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGF 55
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK---FQ 304
V F+ A + ++ N G ++ +EL + +MK+ K
Sbjct: 56 VQFKEKKAAKKVIKNFNNLN--------GLMLGGNKIAVEL---YNPDMKKGESKKVSTM 104
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
N +IKN +++L +L +G +TS G +G F F + E A A+
Sbjct: 105 FTNCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAIN 164
Query: 365 EMNGKMVV------SKPLYVALAQRKEDRRARLQAQFAQM 398
++G +P Y+ QRKE+R L+ F Q+
Sbjct: 165 NLHGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQL 204
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARAL 82
T+ ++ + + T+ +L +L + G+V S+ +D + G+ + NF + + A A+
Sbjct: 106 TNCFIKNFPVDTTEKELLELLVRYGKVTSLYFPIKD--DGKPKGFAFANFESHESALNAI 163
Query: 83 EMLNFT-PLN-----GKPIRVMYSHRDPS----LRK----------SGAGNIFIKNLDKA 122
L+ P + G+P + R LRK S N++I N+ +
Sbjct: 164 NNLHGAFPFDSSKDGGEPFYIQKGQRKEERAEELRKMFEQLSMQGQSYRKNLYITNIPEG 223
Query: 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
+ L++ F FG+I S V D K Y ++ + E A A+E+ N + L+ ++
Sbjct: 224 FGAEELNNIFKEFGSITSMSVGIDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRL 283
Query: 183 YVGHFLRKQERDTE 196
V +F K ER E
Sbjct: 284 QVSYFKNKLERMKE 297
>gi|269859758|ref|XP_002649603.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
gi|220066966|gb|EED44435.1| poly(A)-binding protein [Enterocytozoon bieneusi H348]
Length = 484
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 203/375 (54%), Gaps = 22/375 (5%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGD+ N T ++L ++F + V ++ + + L+ + + +V F +A A A++
Sbjct: 23 IHVGDISLNTTANELKEVFKGLN-VTNIIMKKTLNGQ--YAFAFVKFDSANAAQEAVQKY 79
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N+T LNGK I + S D + S + NIF+ N+ + K L + F FG +LSCK++
Sbjct: 80 NYTMLNGKEILLTIS--DTQFKYSQSANIFVNNIPTDMSAKDLEEIFKNFGPVLSCKISR 137
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF-LRKQERDTEINKSKFTN 204
G+SKGYG+V + N +SA+KA+ + +N+ ++V + +K R++E NK+ FTN
Sbjct: 138 TSEGKSKGYGYVMYKNLKSAKKAVTNCQNVKINENILFVDFYNPQKSARNSE-NKA-FTN 195
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+ KN + TE +L+ +YG IT+ DGK F VN+ + + A RA++ L+
Sbjct: 196 CFCKNFPPNYTEAELKNLLKKYGEITTIYFPTKSDGKPVGFACVNYAHPESAVRAIDELH 255
Query: 265 GK------------KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312
K KF + +Y+ K +KK ERE LK F N +K + NL+I+N
Sbjct: 256 NKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILK-SFYGNSVGFRNKLK-RNLFIQN 313
Query: 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372
+ S +++L ++ FG+IT K+ D + G+V +ST EEA+ AL + ++
Sbjct: 314 VPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKSKQVLLD 373
Query: 373 SKPLYVALAQRKEDR 387
L +++ + K +R
Sbjct: 374 GNQLELSIYKSKYER 388
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 27/199 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+ + + N T+++L +L + G++ ++ S + +G+ VN+++ + A RA++
Sbjct: 194 TNCFCKNFPPNYTEAELKNLLKKYGEITTIYFPTK-SDGKPVGFACVNYAHPESAVRAID 252
Query: 84 MLNF------------TPLNGKPIRVMYSHRDPS---LRKSGAGN-----------IFIK 117
L+ T +P + + + + KS GN +FI+
Sbjct: 253 ELHNKQIFNNNQMQKDTKFAIEPFYIQKNEKKKEREQILKSFYGNSVGFRNKLKRNLFIQ 312
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
N+ + L + FGNI K+ D K +G+V + E A A+EK +LL
Sbjct: 313 NVPTSFSEDELLEILKKFGNITDFKLKLDTLHPEKQFGYVCYSTIEEAAVALEKSKQVLL 372
Query: 178 NDKQVYVGHFLRKQERDTE 196
+ Q+ + + K ER TE
Sbjct: 373 DGNQLELSIYKSKYERSTE 391
>gi|93359570|gb|ABF13311.1| poly-A binding protein, partial [Phaseolus vulgaris]
Length = 172
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/87 (87%), Positives = 81/87 (93%)
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ITSCKVMRDP+G+SRGSGFVAFSTPEEASRAL EMNGKMVVSKPLYV LAQRKEDRRAR
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 391 LQAQFAQMRPVAMASTVAPRMPMYPPG 417
LQAQFAQMRPV M +V PR+PMYPPG
Sbjct: 61 LQAQFAQMRPVGMPPSVGPRVPMYPPG 87
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
TITS VMRD +G S+ GFV F ++A+RA+ +NGK K YV AQ+K +R
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 288 LKHQFEQ 294
L+ QF Q
Sbjct: 61 LQAQFAQ 67
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
I SCKV D NG S+G GFV F E A +A+ ++NG ++ K +YV RK++R
Sbjct: 1 TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRAR 60
Query: 197 INKSKFTNVYVKNLSEST 214
+ +++F + + S
Sbjct: 61 L-QAQFAQMRPVGMPPSV 77
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 192/384 (50%), Gaps = 35/384 (9%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
++ G L V +L+ + D QL D+F + G ++ +C+ S S+G G V + + +A
Sbjct: 74 SKVGAIKLVVKNLDPRMDDQQLRDIFGEFG---TMTLCKVAS---SIGVGLVTYESFDDA 127
Query: 79 ARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138
A+ +N LNG+ ++V HR P R S + ++NL ++L FG +
Sbjct: 128 HAAMTQVNGMYLNGQQVQV---HRLPE-RPS----LIVRNLPADASEESLAALCRPFGRV 179
Query: 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN 198
+ + + G V D E A AI L+G L Q+ V + ER+ E
Sbjct: 180 GVATIVQEAP-EDAPMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAERECESA 238
Query: 199 KSKFTN-----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
++ + +KN+ ++ L++ F +GTI S +MRD GKSK +GFV + +
Sbjct: 239 VAQRLERLQGKLVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTT 298
Query: 254 DDAARAVEALNGKKFD------DKEWYVGKAQK---KSERELELKHQFEQNMKEAADKFQ 304
+ A++A+ A +G+ FD D + K+ R E++H E K
Sbjct: 299 EAASKAMAATHGQTFDRLTRPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRK-- 356
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
NL I+NL +SID+++L+ LF+PFG I +C V+RD G SR GFV F+T EEAS+A+
Sbjct: 357 --NLCIRNLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVA 414
Query: 365 EMNGKMV--VSKPLYVALAQRKED 386
EM+GK P+ V L+ R D
Sbjct: 415 EMHGKPSPGTQMPMTVTLSHRARD 438
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 206/445 (46%), Gaps = 86/445 (19%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L + +++ ++ D QL +LF G ++S+ + RD T +S GYG+V +S + A++A+
Sbjct: 250 LVIKNMDVDMDDDQLEELFAPFGTIISLHIMRD-ETGKSKGYGFVAYSTTEAASKAMAAT 308
Query: 86 N---FTPLNGKPIRVMY-----------SHRDPSLRKSGA--------GNIFIKNLDKAI 123
+ F L +P+ V ++R +R N+ I+NL ++I
Sbjct: 309 HGQTFDRLT-RPLDVTIFTSSEHDGMFKANRVAEVRHHAEVARIAQFRKNLCIRNLGESI 367
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
D K L F+ FG I +C V D G+S+ GFV F E A KA+ +++G Q+
Sbjct: 368 DEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQMP 427
Query: 184 VGHFLRKQERDTE------------------------INKSKFTNVYVKNLSESTTEEDL 219
+ L + RD + I K +YVKN+ + EDL
Sbjct: 428 MTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKL--IYVKNIDPAVELEDL 485
Query: 220 QKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
Q+ FG++G I S+ +MRD G SK G V++ ++D A AV A++GK+ G+
Sbjct: 486 QRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRL----TATGQPL 541
Query: 280 KKSERELELKHQFEQNMKEAADKFQG---ANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+ S + + D+F A+L IKNL+ SI+ L+ LFSPFG I S +
Sbjct: 542 RVS-------------LPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSSR 588
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR----ARLQ 392
+ + V F + E A+ +NG +V P+ + RK DRR A L
Sbjct: 589 TIE----TQPRAALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRK-DRRSVYVANLP 643
Query: 393 AQFAQMRPVAM-------ASTVAPR 410
A + ++ +A+ +T+ PR
Sbjct: 644 ANYNYVKLMALFADCGKIVTTIVPR 668
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 168/349 (48%), Gaps = 34/349 (9%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+YV +++ V L +F Q G +VS + RD S G G+V++ +A A A+ +
Sbjct: 471 IYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRD-DAGISKGIGHVDYLHADAARAAVAAM 529
Query: 86 NFTPLN--GKPIRVMYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAFGNILSC 141
+ L G+P+RV S DP R S ++ IKNL+++I+ AL D FS FG ILS
Sbjct: 530 DGKRLTATGQPLRV--SLPDPRDRFSPIRYASLIIKNLEQSINLSALRDLFSPFGCILSS 587
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
+ + Q + V F +EE+ Q AI +NG ++N V ++RK R
Sbjct: 588 RT---IETQPRA-ALVDFLSEEACQNAIANINGAIVNGLPVTASPYVRKDRR-------- 635
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
+VYV NL + L F + G I + +V RD GFV F+ A E
Sbjct: 636 --SVYVANLPANYNYVKLMALFADCGKIVTTIVPRD----FSTVGFVCFDQPASVELA-E 688
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+G + +E YV + L+ ++ LY+ N+D ++K
Sbjct: 689 RFHGHVLEGEELYVSR--------FPLQTDPAPPPHATSEVAPYHILYLTNVDFEASEDK 740
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
+++L +P+G++T+ V R G SRG FV F+ E+AS+A ++G++
Sbjct: 741 VRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 125/246 (50%), Gaps = 20/246 (8%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SL + +LE ++ S L DLF+ G ++S R + R +L V+F + + A+
Sbjct: 559 SLIIKNLEQSINLSALRDLFSPFGCILSSRTI-ETQPRAAL----VDFLSEEACQNAIAN 613
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+N +NG P+ P +RK ++++ NL ++ L F+ G I++ V
Sbjct: 614 INGAIVNGLPVTA-----SPYVRKDRR-SVYVANLPANYNYVKLMALFADCGKIVTTIVP 667
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS---- 200
D + GFV FD S + A E+ +G +L +++YV F + + + +
Sbjct: 668 RDFST----VGFVCFDQPASVELA-ERFHGHVLEGEELYVSRFPLQTDPAPPPHATSEVA 722
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+ +Y+ N+ +E+ +++ YGT+T+ V R DG S+ F FV+F N +DA++A
Sbjct: 723 PYHILYLTNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAK 782
Query: 261 EALNGK 266
+AL+G+
Sbjct: 783 DALSGQ 788
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 8 GQNVNGGGANANQF---GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
G VNG A+ + S+YV +L AN +L LF G++V+ V RD ST
Sbjct: 616 GAIVNGLPVTASPYVRKDRRSVYVANLPANYNYVKLMALFADCGKIVTTIVPRDFST--- 672
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV--MYSHRDPSLRKSGAGNI------FI 116
G+V F A E + L G+ + V DP+ + ++
Sbjct: 673 --VGFVCFDQPASVELA-ERFHGHVLEGEELYVSRFPLQTDPAPPPHATSEVAPYHILYL 729
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176
N+D + + + +G + + V +G S+G+ FV F N E A KA + L+G +
Sbjct: 730 TNVDFEASEDKVRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSGQI 789
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 179/337 (53%), Gaps = 12/337 (3%)
Query: 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA 111
S +V T + LGYGY+ F++ +EA R L+ +N LNG+ +R++ H +
Sbjct: 113 SAKVVLHKRTSKPLGYGYLQFNSKEEADRCLQDMNNYVLNGQALRIV--HSVSKFDYNPK 170
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171
N+ +KNLDK + + L D+F FG+I S K+ T +G S+GY F+QF +EE A+KA+
Sbjct: 171 ANLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNA 230
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N + K++ + +K R+ ++KF N++VKNL + T ++ L+ FG++G I S
Sbjct: 231 MNQAEIKGKKIEINRHEKKATRENP-QQTKFNNLFVKNLPKGTDDDQLKGLFGKFGEIES 289
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V RD G K +G+V F+ D A AV +N K+ DD+ V + K + E +
Sbjct: 290 VTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQIDDQFLIVNQHISKKDNEPTQGSR 349
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS-PFGSITSCKVMRDPSGISRGS-- 348
+ + +K +N+YIK + + + +E+L++ FS +I S K+ + I
Sbjct: 350 LNP-ITQNLNKTFNSNIYIKFIPNEVTEEELRKTFSMKDANIVSIKLTKFVKKIEDQEVQ 408
Query: 349 ----GFVAFSTPEEASRALLEMNGKMVV-SKPLYVAL 380
++ + T A +A+ + V +KPL V L
Sbjct: 409 PYQFAYILYDTVLGAQKAIQTFDQSTVFGNKPLLVEL 445
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 129/233 (55%), Gaps = 41/233 (17%)
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVY+K++ S TEE +++ FG +G ITS + D G+ F FVNF + A AVE
Sbjct: 4 FTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVE 61
Query: 262 ALNGKKFDDKE---------------------------------------WYVGKAQKKS 282
++G+ ++E YV +AQ K+
Sbjct: 62 DMDGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKA 121
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
ER LK QF +F G NLY+KNL +++DD +LK++F PFG+ITS KVM D
Sbjct: 122 ERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDK 181
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ ++
Sbjct: 182 GVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 55/232 (23%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IK++ + + + + F AFG I S + TD G+ + FV F E A+ A+E +
Sbjct: 6 NVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTDPKGRR--FAFVNFAEFEQARAAVEDM 63
Query: 173 NGMLLNDKQ---------------------------------------VYVGHFLRKQER 193
+G + +++ +YV K ER
Sbjct: 64 DGEDVRNEEEKAADKAQREREREERRVAREAVGDEVESDDDVEPESYRLYVARAQSKAER 123
Query: 194 DTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+ K +F N+YVKNL E+ + +L++ F +GTITS VM D G
Sbjct: 124 -AAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKG 182
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
S+ FGFV F ++A +AV ++ K K YVG +K+ +R L+ ++
Sbjct: 183 VSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G N+++KNL + +D L F FG I S KV TD G S+G+GFV F E A KA+
Sbjct: 143 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 202
Query: 170 EKLNGMLLNDKQVYVGHFLRKQER 193
++ L+ K +YVG ++++R
Sbjct: 203 TDMHLKLIGGKPLYVGMHEKREQR 226
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G GA +FG +LYV +L V D++L +F G + SV+V D S G+G+V F
Sbjct: 134 GKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFGFVCF 192
Query: 73 SNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRK 108
S +EA +A+ ++ + GKP+ V M+ R+ L +
Sbjct: 193 STHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLER 229
>gi|303391122|ref|XP_003073791.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
gi|303302939|gb|ADM12431.1| polyadenylate-binding protein 2 [Encephalitozoon intestinalis ATCC
50506]
Length = 410
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 163/291 (56%), Gaps = 13/291 (4%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166
R GNIF+KNL + K L D FS FG I SCKVAT +G+SKGYGFVQF +++A+
Sbjct: 6 RPPETGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGFVQFKEKKAAK 65
Query: 167 KAIE---KLNGMLLNDKQVYVGHFLRKQER-DTEINKSKFTNVYVKNLSESTTEEDLQKS 222
K I+ LNG++L + ++ V + + ++ + + + FTN ++KN EE+L++
Sbjct: 66 KVIKNFNNLNGLMLGENKIVVELYNPEMKKGENKKTPTMFTNCFIKNFPVDVEEENLREL 125
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK-KFDDKE----WYVGK 277
+YG +TS DGK K F F NFE+ + A A++ L+ F D E +Y+ K
Sbjct: 126 LEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQK 185
Query: 278 AQKKSERELELKHQFEQ-NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
Q+K ER EL+ FEQ +M+ + K NLYI N+ + E+L +F FG+ITS
Sbjct: 186 GQRKEERAEELRKTFEQLSMQGQSYK---KNLYITNIPEGFGAEELNNIFREFGNITSMS 242
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
V D + + +V +STPEEAS A+ N + L VA + K +R
Sbjct: 243 VGTDGANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLER 293
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 28/287 (9%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +++V +L N T L D F+ G++ S +V S +S GYG+V F + A + +
Sbjct: 10 TGNIFVKNLPENFTSKDLDDAFSMFGEITSCKVA-TTSHGKSKGYGFVQFKEKKAAKKVI 68
Query: 83 EMLNFTPLNGKPI---RVMYSHRDPSLRK-------SGAGNIFIKNLDKAIDHKALHDTF 132
+ NF LNG + +++ +P ++K + N FIKN ++ + L +
Sbjct: 69 K--NFNNLNGLMLGENKIVVELYNPEMKKGENKKTPTMFTNCFIKNFPVDVEEENLRELL 126
Query: 133 SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN-----GMLLNDKQVYVGHF 187
+G + S T +G+ KG+ F F++ E A AI+ L+ G + + Y+
Sbjct: 127 EKYGKVTSLFFPTKEDGKPKGFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQKG 186
Query: 188 LRKQERDTEINK----------SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD 237
RK+ER E+ K S N+Y+ N+ E E+L F E+G ITS V D
Sbjct: 187 QRKEERAEELRKTFEQLSMQGQSYKKNLYITNIPEGFGAEELNNIFREFGNITSMSVGTD 246
Query: 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
G K + +V + ++A+ AVE N D V + K ER
Sbjct: 247 GANSQKQYAYVCYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLER 293
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 30/222 (13%)
Query: 188 LRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
+RK ER E N++VKNL E+ T +DL +F +G ITS V GKSK +GF
Sbjct: 1 MRKDERPPETG-----NIFVKNLPENFTSKDLDDAFSMFGEITSCKVATTSHGKSKGYGF 55
Query: 248 VNFENSDDAARAVEA---LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK-- 302
V F+ A + ++ LNG + + V EL + MK+ +K
Sbjct: 56 VQFKEKKAAKKVIKNFNNLNGLMLGENKIVV-----------EL---YNPEMKKGENKKT 101
Query: 303 -FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
N +IKN +++E L++L +G +TS G +G F F + E A
Sbjct: 102 PTMFTNCFIKNFPVDVEEENLRELLEKYGKVTSLFFPTKEDGKPKGFAFANFESHECALN 161
Query: 362 ALLEMN-----GKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398
A+ ++ G +P Y+ QRKE+R L+ F Q+
Sbjct: 162 AIKNLHETFPFGDGESGEPFYIQKGQRKEERAEELRKTFEQL 203
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 66 GYGYVNFSNAQEAARALEMLNFT-PL----NGKPIRVMYSHRDPS----LRK-------- 108
G+ + NF + + A A++ L+ T P +G+P + R LRK
Sbjct: 147 GFAFANFESHECALNAIKNLHETFPFGDGESGEPFYIQKGQRKEERAEELRKTFEQLSMQ 206
Query: 109 --SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166
S N++I N+ + + L++ F FGNI S V TD K Y +V + E A
Sbjct: 207 GQSYKKNLYITNIPEGFGAEELNNIFREFGNITSMSVGTDGANSQKQYAYVCYSTPEEAS 266
Query: 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
A+E+ N + L+ ++ V +F K ER E
Sbjct: 267 IAVERGNEIYLDGNRLQVAYFKNKLERMKE 296
>gi|365760899|gb|EHN02583.1| Pes4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 598
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 188/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA RA+E L
Sbjct: 80 LFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERAMEEL 139
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NG+ IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 140 NYTDVNGREIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 199
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--------- 193
+ + K GFV F+NE++A+ I+ N K++ G K+ R
Sbjct: 200 LDS-----RKDIGFVYFENEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 254
Query: 194 -----DTEINKSKFTN---------------------VYVKNLSESTTEEDLQKSFGEYG 227
+T I K + N +++KNL TT +D+ F E G
Sbjct: 255 SRLDAETIIEKEQALNATQLKRNDGASKNNQSSSQNSIFIKNLPIITTRDDVLNFFSEVG 314
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV +++++D+ +A++ N F K+ V +AQ K ER
Sbjct: 315 PIKS-IYLSNATKVKYLWAFVTYKSNEDSEKAIKRYNNFYFRGKKLLVSRAQDKEERAKF 373
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 374 IESQ------------KMSTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYNESSA 420
Query: 348 --SGFVAFSTPEEASRALLEMNGKMV 371
SG + F E+A+R +N ++V
Sbjct: 421 TYSGHIKFRNFEDATRIFNFLNNRLV 446
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 33/222 (14%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
K +++ +L E+ TEE L+ FG++ + SA V D KS G++NFE+ ++A RA
Sbjct: 76 KLIPLFIGDLHETVTEETLKGIFGKFPSFVSAKVCLDSITKKSLGHGYLNFEDKEEAERA 135
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---DDS 316
+E LN + +E + + + + F +N G N++ NL +
Sbjct: 136 MEELNYTDVNGREIRIMPSLRNT--------TFRKNF--------GTNVFFSNLPLNNPL 179
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPL 376
+ FS +G I SCK+ + GFV F + A + N K +
Sbjct: 180 LTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFENEKTARNVIKMYNNTSFFGKKI 234
Query: 377 YVALAQRKEDR--------RARLQAQFAQMRPVAMASTVAPR 410
+ KE R ++RL A+ + A+ +T R
Sbjct: 235 LCGIHFDKEVRSVPNFETQKSRLDAETIIEKEQALNATQLKR 276
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 183 YVGHFLRKQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
+VG+F ++ER+ E+ KFTNVY+KN E T+E L++ F +G S VM+D G
Sbjct: 1 FVGNFKSRKEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERG 60
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
+S+ FGFVNF + DA +AV+ +NG + + K YVG+AQK+ ER+ ELK +FE ++
Sbjct: 61 RSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRI 120
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
++QG NLY+KNLDD IDDE+L++ F+P+G+ITS KV
Sbjct: 121 QRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKV 157
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 14/135 (10%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKN + + L + FSAFG LS +V D G+S+G+GFV F + AQKA++++
Sbjct: 24 NVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEM 83
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDL 219
NG LN K +YVG ++ ER E+ K KF N+YVKNL + +E L
Sbjct: 84 NGTELNGKVIYVGRAQKRLERQGEL-KRKFELIKQDRIQRYQGVNLYVKNLDDGIDDERL 142
Query: 220 QKSFGEYGTITSAVV 234
+K F YGTITSA V
Sbjct: 143 RKEFAPYGTITSAKV 157
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 10/122 (8%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
+VG + + ERE EL + A KF N+YIKN + DEKLK++FS FG
Sbjct: 1 FVGNFKSRKEREEELGSK--------ALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTL 50
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
S +VM+D G SRG GFV F+ +A +A+ EMNG + K +YV AQ++ +R+ L+
Sbjct: 51 SVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKR 110
Query: 394 QF 395
+F
Sbjct: 111 KF 112
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 21/146 (14%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G+ A +F T++Y+ + + TD +L ++F+ G+ +SVRV +D RS G+G+VNF++
Sbjct: 16 GSKALKF--TNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAH 72
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIK 117
+A +A++ +N T LNGK I V + + D R G N+++K
Sbjct: 73 HGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGV-NLYVK 131
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKV 143
NLD ID + L F+ +G I S KV
Sbjct: 132 NLDDGIDDERLRKEFAPYGTITSAKV 157
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
Query: 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
AQKKSER ELK + EQ+ E K+QG NLY+KNLD+S+DDE LK+ F FG+ITS KV
Sbjct: 1 AQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKV 60
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
M D +G S+G GFV F PEEA+ A+ EMN KMV SKPLYVALAQRKEDRRA+L +Q+ Q
Sbjct: 61 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQ 120
Query: 398 -MRPVAMASTVAPRMPMYPP 416
+ + M S V P MY P
Sbjct: 121 RLASMRMHSNV-PGGGMYNP 139
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+Q + + K + N+YVKNL ES +E L+K F +G ITSA VM D +G+SK FGFV
Sbjct: 16 EQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVC 75
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FE ++A AV +N K K YV AQ+K +R +L Q+ Q +
Sbjct: 76 FEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 122
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 62/97 (63%)
Query: 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFD 160
H+ ++K N+++KNLD+++D +AL F FGNI S KV TD NG+SKG+GFV F+
Sbjct: 18 HKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFE 77
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
E A A+ ++N ++ K +YV RK++R ++
Sbjct: 78 KPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQL 114
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +LYV +L+ +V D L F G + S +V D RS G+G+V F +EA
Sbjct: 25 KYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTD-ENGRSKGFGFVCFEKPEEAT 83
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLR 107
A+ +N + KP+ V + R R
Sbjct: 84 TAVTEMNSKMVCSKPLYVALAQRKEDRR 111
>gi|331224641|ref|XP_003324992.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303982|gb|EFP80573.1| hypothetical protein PGTG_06529 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 306
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 129/238 (54%), Gaps = 9/238 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALE 83
S+YVGDL +T+ QL +F+Q V +R+ +TR Y YV +S+A A A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N T GKP RVM S + S A N+F+K+L + A HDTF+ FG +LS K+
Sbjct: 89 EFNQTEFLGKPCRVMKSIHGAAKGLSEA-NVFVKHLPAKLSAIAFHDTFADFGEVLSSKL 147
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN----DKQVYVGHFLRKQERDTEINK 199
A D KGYGFVQ+ E AQKAI + NG L+ K + F++K+ R I
Sbjct: 148 AIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIKTSLFIKKENR---IVS 204
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257
+F NV+ +NLS T E ++++ +YG ITSA + DGK GF NFE AA
Sbjct: 205 REFKNVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGFANFEKPSAAA 262
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVM--RDGDGKSKCFGFVNFENSDDAARAVE 261
+VYV +L TEE L + F + + + + + + +V + ++D A A+
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
N +F K V K ++ AA AN+++K+L +
Sbjct: 89 EFNQTEFLGKPCRVMK-----------------SIHGAAKGLSEANVFVKHLPAKLSAIA 131
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV----VSKPLY 377
F+ FG + S K+ D + +G GFV ++T E+A +A+ E NG + +KP+
Sbjct: 132 FHDTFADFGEVLSSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLDVEGATKPIK 191
Query: 378 VALAQRKEDR 387
+L +KE+R
Sbjct: 192 TSLFIKKENR 201
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 18/250 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNI--LSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L I + L FS + + K+ + Y +V + + ++A AI
Sbjct: 29 SVYVGDLPPEITEEQLTQVFSQASPVEKIRIKLPKRNTRFRRAYAYVTYSSADAATAAIR 88
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+ N K V + + NV+VK+L + +F ++G +
Sbjct: 89 EFNQTEFLGKPCRVMKSIHGAAKGLSE-----ANVFVKHLPAKLSAIAFHDTFADFGEVL 143
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ + D K +GFV + ++ A +A+ NG D V A K + L +K
Sbjct: 144 SSKLAIDHLNVPKGYGFVQYATAEQAQKAIRETNGSTLD-----VEGATKPIKTSLFIKK 198
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ +E F+ N++ +NL I EK KQ +S +G ITS + G G+GF
Sbjct: 199 ENRIVSRE----FK--NVFFRNLSTKITLEKFKQTWSKYGVITSAFLSLGKDGKPTGTGF 252
Query: 351 VAFSTPEEAS 360
F P A+
Sbjct: 253 ANFEKPSAAA 262
>gi|440302784|gb|ELP95091.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 546
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 180/352 (51%), Gaps = 23/352 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++V L NVTDS L + + +VVS+ V ++ S Y+N S A R +
Sbjct: 22 TIFVSGLTNNVTDSLLSSVVMEKFPTEVVSIHVTKNES-HFDTPIAYINMSTHDAAKRVI 80
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
LN ++GKPI + ++ +D R N+F+KN+ K+++ K L D FSA G LS K
Sbjct: 81 STLNGVMVDGKPINMFWALKDFKQRTDTQTNLFVKNIKKSVNQKELQDVFSAIGETLSVK 140
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLRKQERDTEINKSK 201
++ + G+S G+G+V++ E+ Q A++K + + ++ +V KQ NKS+
Sbjct: 141 LSLNEKGESNGFGYVKYRTLEATQAALDKSDELKAKIGEETFVVQKFEKQ------NKSR 194
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSA------VVMRDGDGKSKCFGFVNFENSDD 255
TN+YV N+ + TEE K F +G I V+ + K GFV+FEN +D
Sbjct: 195 KTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFENEED 254
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
AA+AV A + E V + K ER E K + + K++ NLY+ L +
Sbjct: 255 AAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYKDFNLYVDTLKE 314
Query: 316 SIDDEKLKQLFSPFGSITSCKVM---RDPSGISRGSGFVAFSTPEEASRALL 364
SI ++++++ G I S + R P+G++ ++ ++T E A+ A++
Sbjct: 315 SITEKEIREGLGEEGEIYSLSIRWVDRKPTGVA----YLCYTTAEGANNAIV 362
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+V +++ +V +L D+F+ +G+ +SV++ + S G+GYV + + AL+
Sbjct: 110 TNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLN-EKGESNGFGYVKYRTLEATQAALD 168
Query: 84 MLN-FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ G+ V+ + KS N+++ N+DK + + F FG I
Sbjct: 169 KSDELKAKIGEETFVVQKFEKQN--KSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTS 226
Query: 143 --------VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
V+ + +K GFV F+NEE A KA+ +L + ++ V ++ K+ER
Sbjct: 227 DKKPQVLFVSEETKDTAK--GFVDFENEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERR 284
Query: 195 TEIN------------KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E K K N+YV L ES TE+++++ GE G I S + +R D K
Sbjct: 285 REWKAKTAEVKANIKGKYKDFNLYVDTLKESITEKEIREGLGEEGEIYS-LSIRWVDRKP 343
Query: 243 KCFGFVNFENSDDAARAV 260
++ + ++ A A+
Sbjct: 344 TGVAYLCYTTAEGANNAI 361
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 129/272 (47%), Gaps = 35/272 (12%)
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR--KQERDT 195
++S V + + ++ ++A++ I LNG++++ K + + L+ KQ DT
Sbjct: 49 VVSIHVTKNESHFDTPIAYINMSTHDAAKRVISTLNGVMVDGKPINMFWALKDFKQRTDT 108
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
+ TN++VKN+ +S +++LQ F G S + + G+S FG+V +
Sbjct: 109 Q------TNLFVKNIKKSVNQKELQDVFSAIGETLSVKLSLNEKGESNGFGYVKY----- 157
Query: 256 AARAVEALNG--KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
R +EA K D+ + +G+ E + +FE+ +K + NLY+ N+
Sbjct: 158 --RTLEATQAALDKSDELKAKIGE-------ETFVVQKFEKQ-----NKSRKTNLYVYNI 203
Query: 314 DDSIDDEKLKQLFSPFGSI--TSCK----VMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
D + +E+ + F FG I TS K + GFV F E+A++A+
Sbjct: 204 DKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFENEEDAAKAVSAPK 263
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ + + VA + KE+RR +A+ A+++
Sbjct: 264 NSVLGNGEIVVAYYKNKEERRREWKAKTAEVK 295
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-----RVCRDLSTRRSLGYGYVNFS 73
N+ T+LYV +++ VT+ Q F G + +V + G+V+F
Sbjct: 191 NKSRKTNLYVYNIDKKVTEEQFIKYFETFGPIRKTSDKKPQVLFVSEETKDTAKGFVDFE 250
Query: 74 NAQEAARALEMLNFTPL-NGKPIRVMYSHRDPSLRKSGAG---------------NIFIK 117
N ++AA+A+ + L NG+ + Y +++ R+ A N+++
Sbjct: 251 NEEDAAKAVSAPKNSVLGNGEIVVAYYKNKEERRREWKAKTAEVKANIKGKYKDFNLYVD 310
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
L ++I K + + G I S + ++ + G ++ + E A AI K G L
Sbjct: 311 TLKESITEKEIREGLGEEGEIYSLSIRW-VDRKPTGVAYLCYTTAEGANNAIVK--GTQL 367
Query: 178 NDKQVYVGHFLRKQE 192
K V FL KQE
Sbjct: 368 GWK---VFKFLNKQE 379
>gi|328851168|gb|EGG00325.1| hypothetical protein MELLADRAFT_28015 [Melampsora larici-populina
98AG31]
Length = 223
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 14/228 (6%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L +V L ++F+Q V++ RVC D T++ GYGYV+++ +EA AL
Sbjct: 1 SLYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALRE 60
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N L GKPIRVM S+ N+FIKNL K+ LHD+F FG ILS K++
Sbjct: 61 FNHINLKGKPIRVMRSYSGKPKEFPSEANLFIKNLPKSFTPINLHDSFERFGKILSSKIS 120
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL---------NDKQVYVGHFLRKQERDT 195
D G SKGYG++QF+N + + +AI N N K++ V +++ ++R
Sbjct: 121 FDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVKPEDR-- 178
Query: 196 EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
K KFTNV+ +NL TEE K E+G ITS ++ K+K
Sbjct: 179 ---KPKFTNVFFRNLPLDFTEESFSKYASEFGKITSLILNPINKSKAK 223
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 17/225 (7%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ NL ++ + L + FS +++ +V D + + +GYG+V + E A A+ +
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 173 NGMLLNDKQVYV--GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
N + L K + V + + +E +E N+++KNL +S T +L SF +G I
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKEFPSE------ANLFIKNLPKSFTPINLHDSFERFGKIL 115
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ + D G SK +G++ FEN D+ A+ N +FD K+ K KK + +K
Sbjct: 116 SSKISFDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMKKLKVTSYVKP 175
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
+ + KF N++ +NL +E + S FG ITS
Sbjct: 176 E------DRKPKF--TNVFFRNLPLDFTEESFSKYASEFGKITSL 212
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+YV NL++ +DL F + + +A V D K + +G+V++ ++A A+
Sbjct: 2 LYVGNLTDDVNVQDLLNIFSQASPVINARVCIDRITQKPRGYGYVSYATPEEADLALREF 61
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K V ++ +E ANL+IKNL S L
Sbjct: 62 NHINLKGKPIRVMRSYSGKPKEFP----------------SEANLFIKNLPKSFTPINLH 105
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG---------KMVVSK 374
F FG I S K+ D G S+G G++ F P++++ A+L N + K
Sbjct: 106 DSFERFGKILSSKISFDQLGNSKGYGYIQFENPKDSNEAILNSNDFQFDIKDEEESKNMK 165
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPV 401
L V + EDR+ + F + P+
Sbjct: 166 KLKVTSYVKPEDRKPKFTNVFFRNLPL 192
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 118/174 (67%), Gaps = 7/174 (4%)
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
+FE+ + A +AVEALNG K YV QK+ ER+ ELK +F++ E +++QG NL
Sbjct: 3 SFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNL 62
Query: 309 YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG 368
Y+KNL D+IDD +L++ F+ FG+ITS KVM G S+G GFV F +PEEA++A++EMN
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 369 KMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWL 422
K++ ++PLYVALAQ+K+DR+A+L +Q+ M T + MP + G + L
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQY-------MQRTSSRDMPEHRIGPGVNL 169
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 18/197 (9%)
Query: 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE------------INKSKFTNVY 206
F++ E+A+KA+E LNG K +YV ++ ER E IN+ + N+Y
Sbjct: 4 FEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNLY 63
Query: 207 VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
VKNL+++ + L+K F ++GTITSA VM DG+SK FGFV F + ++AA+A+ +N K
Sbjct: 64 VKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNEK 123
Query: 267 KFDDKEWYVGKAQKKSERELELKHQFEQ-----NMKEAADKFQGANLYIKNLDDSIDDEK 321
+ + YV AQKK +R+ +L Q+ Q +M E G NL+IKNLD SIDDEK
Sbjct: 124 LIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIG-PGVNLFIKNLDKSIDDEK 182
Query: 322 LKQLFSPFGSITSCKVM 338
L++ FS FG+ITS KV+
Sbjct: 183 LREEFSQFGTITSAKVV 199
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 32/197 (16%)
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD----------------PSLRKSGAGNI 114
+F + + A +A+E LN GK I V ++ + + N+
Sbjct: 3 SFEDPEAAEKAVEALNGNDNAGKIIYVRCDQKEIERQAELKEKFQRIRMERINRYQGVNL 62
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174
++KNL ID L F+ FG I S KV T +G+SKG+GFV F + E A KAI ++N
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKF----------------TNVYVKNLSESTTEED 218
L+ + +YV +KQ+R ++ N+++KNL +S +E
Sbjct: 123 KLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDDEK 182
Query: 219 LQKSFGEYGTITSAVVM 235
L++ F ++GTITSA V+
Sbjct: 183 LREEFSQFGTITSAKVV 199
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 25/148 (16%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSNAQ 76
N++ +LYV +L N+ D +L F Q G + S +V ++T RS G+G+V F + +
Sbjct: 55 NRYQGVNLYVKNLADNIDDVRLRKEFAQFGTITSAKV---MTTEDGRSKGFGFVCFRSPE 111
Query: 77 EAARALEMLNFTPLNGKPIRVMY-------------------SHRDPSLRKSGAG-NIFI 116
EAA+A+ +N + +P+ V S RD + G G N+FI
Sbjct: 112 EAAKAIVEMNEKLIEARPLYVALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFI 171
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVA 144
KNLDK+ID + L + FS FG I S KV
Sbjct: 172 KNLDKSIDDEKLREEFSQFGTITSAKVV 199
>gi|262192741|gb|ACY30440.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 99
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/78 (91%), Positives = 77/78 (98%)
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
DPSG+S+GSGFVAFSTPEEASRAL EMNGKMVVSKPLYVALAQRKE+RRARLQAQF+QMR
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 60
Query: 400 PVAMASTVAPRMPMYPPG 417
P+AMAS+VAPRMPMYPPG
Sbjct: 61 PIAMASSVAPRMPMYPPG 78
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 237 DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
D G SK GFV F ++A+RA+ +NGK K YV AQ+K ER L+ QF Q
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 58
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
D +G SKG GFV F E A +A+ ++NG ++ K +YV RK+ER + +++F+ +
Sbjct: 1 DPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARL-QAQFSQM 59
Query: 206 YVKNLSESTTEEDLQKSFGEYG 227
++ S G +G
Sbjct: 60 RPIAMASSVAPRMPMYPPGGHG 81
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 21/241 (8%)
Query: 157 VQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTE 216
V F+ + A++ + ++ +LLN+ + H DTE +K+K +YVKN + E
Sbjct: 5 VHFEIQVEAKRVVHAVD-VLLNESGMSDEHV-----NDTE-SKTKTCPIYVKNFVKEIDE 57
Query: 217 EDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276
+D FG+ G T ++ + G+ FG + F DA RAV+ + G + Y+
Sbjct: 58 DDF---FGKCGASTK--IINNDCGQQTEFGLLPFNKQKDAIRAVDKMKGM-----DIYLA 107
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK 336
+A+ K +R+ E + E K ++ NLY+KNL IDD +LK+ F+PFG+ITS K
Sbjct: 108 QAKIKEKRQTEFSKKPEPLHK---PRYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAK 164
Query: 337 VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396
VMR+ G S+G GFV FSTP EA +AL EMNGK++ SKPLYVA AQRK++R+ L Q+
Sbjct: 165 VMRE-GGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAWAQRKQERQVSLAQQYT 223
Query: 397 Q 397
Q
Sbjct: 224 Q 224
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 114/208 (54%), Gaps = 20/208 (9%)
Query: 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFD 160
H + + K+ I++KN K ID D F G S K+ + GQ +G + F+
Sbjct: 33 HVNDTESKTKTCPIYVKNFVKEIDED---DFFGKCG--ASTKIINNDCGQQTEFGLLPFN 87
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE-------INKSKF--TNVYVKNLS 211
++ A +A++K+ GM +Y+ K++R TE ++K ++ N+YVKNLS
Sbjct: 88 KQKDAIRAVDKMKGM-----DIYLAQAKIKEKRQTEFSKKPEPLHKPRYNSVNLYVKNLS 142
Query: 212 ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
+ L+K F +GTITSA VMR+G G+SK FGFV F +A +A+ +NGK K
Sbjct: 143 YEIDDYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKILASK 201
Query: 272 EWYVGKAQKKSERELELKHQFEQNMKEA 299
YV AQ+K ER++ L Q+ Q M++A
Sbjct: 202 PLYVAWAQRKQERQVSLAQQYTQRMEKA 229
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ + +LYV +L + D +L F G + S +V R+ RS G+G+V FS EA
Sbjct: 130 RYNSVNLYVKNLSYEIDDYRLKKEFAPFGTITSAKVMREGG--RSKGFGFVCFSTPAEAR 187
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKA 122
+AL +N L KP+ V ++ R R+ + + ++KA
Sbjct: 188 KALSEMNGKILASKPLYVAWAQRKQE-RQVSLAQQYTQRMEKA 229
>gi|14318545|ref|NP_116678.1| Pes4p [Saccharomyces cerevisiae S288c]
gi|1172434|sp|P39684.2|PES4_YEAST RecName: Full=Protein PES4; AltName: Full=DNA polymerase epsilon
suppressor 4
gi|836778|dbj|BAA09262.1| DNA polymerase epsilon suppressor 4 [Saccharomyces cerevisiae]
gi|151940784|gb|EDN59171.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345636|gb|EDZ72395.1| YFR023Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256268849|gb|EEU04202.1| Pes4p [Saccharomyces cerevisiae JAY291]
gi|259146215|emb|CAY79474.1| Pes4p [Saccharomyces cerevisiae EC1118]
gi|285811918|tpg|DAA12463.1| TPA: Pes4p [Saccharomyces cerevisiae S288c]
gi|392299695|gb|EIW10788.1| Pes4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 611
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 188/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--------- 193
+ + K GFV F++E++A+ I+ N K++ G K+ R
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 194 -----DTEINKSKFTN---------------------VYVKNLSESTTEEDLQKSFGEYG 227
+T I K + N +++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ F E+A+R +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 151/272 (55%), Gaps = 23/272 (8%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
+++ +L + +T + L + G+VV+V L R++ + +V F + A +A++
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVT----LKERQNGNFAFVTFDTPESALKAIKEF 66
Query: 86 NFTPLNGKPIRVMYSHRD-PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N+T LNG PI + + ++ +L KSG GN++++ LD I+ LH+ F +G ++SCK+
Sbjct: 67 NYTKLNGSPIVITPTTQEYQNLIKSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCKLP 126
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--- 201
T +G +KGY +VQF + A+KA +LN ++N K++ V + +K+ER + + +
Sbjct: 127 TGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPY-KKKERPQKTSPASNPR 185
Query: 202 --------FTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
FTN++++NL + E DL F E+G + S ++ DG GF N +
Sbjct: 186 GAPASDDVFTNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPDG-----FSGFCNMID 240
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
D A RA++ALNGK D K V +A K ER
Sbjct: 241 HDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 124/275 (45%), Gaps = 14/275 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
+ I NL I + G +++ + NG + FV FD ESA KAI++ N
Sbjct: 11 VHISNLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTPESALKAIKEFN 67
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LN + + QE I KS N+YV+ L L + F YG + S
Sbjct: 68 YTKLNGSPIVITP--TTQEYQNLI-KSGEGNLYVRGLDVYIEVSQLHELFQTYGEVISCK 124
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ DG +K + +V F + +DA +A LN + K+ V +KK +
Sbjct: 125 LPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYKKKERPQKTSPASNP 184
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEK-LKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
+ + D F N++I+NL ++ +E L LFS FG + S K++ D G S GF
Sbjct: 185 RGAPASDDVF--TNIFIRNLPSNVRNETDLGNLFSEFGVVISTKMLPD--GFS---GFCN 237
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+ A RA+ +NGK++ K L V A KE+R
Sbjct: 238 MIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEER 272
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSL--GYGYVNFSNAQEAA 79
G +LYV L+ + SQL++LF G+V+S C+ + L GY YV F + +A
Sbjct: 92 GEGNLYVRGLDVYIEVSQLHELFQTYGEVIS---CKLPTGTDGLNKGYAYVQFRDPNDAE 148
Query: 80 RALEMLNFTPLNGKPIRV-MYSHRD------PSLRKSGAG-------NIFIKNLDKAIDH 125
+A LN +NGK I V Y ++ P+ GA NIFI+NL + +
Sbjct: 149 KARVELNDAVINGKKISVEPYKKKERPQKTSPASNPRGAPASDDVFTNIFIRNLPSNVRN 208
Query: 126 KA-LHDTFSAFGNILSCKVATDLNGQSKGY-GFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
+ L + FS FG ++S K+ D G+ GF + +SA +AI+ LNG +++ K +
Sbjct: 209 ETDLGNLFSEFGVVISTKMLPD------GFSGFCNMIDHDSAVRAIQALNGKVIDGKVLE 262
Query: 184 VGHFLRKQER 193
V + K+ER
Sbjct: 263 VVRAISKEER 272
>gi|190406596|gb|EDV09863.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 611
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 188/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--------- 193
+ + K GFV F++E++A+ I+ N K++ G K+ R
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 194 -----DTEINKSKFTN---------------------VYVKNLSESTTEEDLQKSFGEYG 227
+T I K + N +++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ F E+A+R +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
>gi|170042459|ref|XP_001848942.1| polyadenylate-binding protein [Culex quinquefasciatus]
gi|167866018|gb|EDS29401.1| polyadenylate-binding protein [Culex quinquefasciatus]
Length = 339
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 143/254 (56%), Gaps = 31/254 (12%)
Query: 132 FSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191
FS+ GN+LSCKVA D+ G SKGY FV F SA AI+++NG+ +N + V
Sbjct: 2 FSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPL---- 57
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFE 251
FT ++V+N + T+ LQ+ F YG+I + V KS+ GF+ ++
Sbjct: 58 ----------FTKLHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYD 101
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
+ + A A+EALNGK D GKA R + + + Q A+ + ++++
Sbjct: 102 SPEAAGHALEALNGKALSD-----GKAL----RVVPVPERVLQPAPRLAEG-EAVQVFVR 151
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
NLD SID+ L +LF+P+G + ++++ G S+G GFV +++ E+A+RA++EMN + V
Sbjct: 152 NLDASIDNRHLGELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREV 210
Query: 372 VSKPLYVALAQRKE 385
K +YV LA+ KE
Sbjct: 211 AGKRIYVVLARGKE 224
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 137/291 (47%), Gaps = 34/291 (11%)
Query: 43 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102
+F+ +G V+S +V D+ S GY +V F A A++ +N +NG + V
Sbjct: 1 MFSSVGNVLSCKVALDIQGC-SKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAV----- 54
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNE 162
P K + ++N + L + F+ +G+I + V +S+G GF+ +D+
Sbjct: 55 SPLFTK-----LHVRNFGDRLTQTTLQELFAPYGSIKAHGV------KSRGCGFIIYDSP 103
Query: 163 ESAQKAIEKLNGMLLNDKQVY--VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
E+A A+E LNG L+D + V R + + + + V+V+NL S L
Sbjct: 104 EAAGHALEALNGKALSDGKALRVVPVPERVLQPAPRLAEGEAVQVFVRNLDASIDNRHLG 163
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV----G 276
+ F YG + ++++ GKSK FGFV + + + AARA+ +N ++ K YV G
Sbjct: 164 ELFAPYGDVQRGFIVKE-QGKSKGFGFVTYASGEQAARAIVEMNDREVAGKRIYVVLARG 222
Query: 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
K + K E++ H E A +L +K + D ++LK L +
Sbjct: 223 KEKPKPVSEVDAGH-------EPATTTDDTSLLLKTITDP---DELKSLLA 263
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL-----LEMNGKMVVSKPLYVA 379
+FS G++ SCKV D G S+G FV F A A+ L +NG + PL+
Sbjct: 1 MFSSVGNVLSCKVALDIQGCSKGYAFVYFYATSSAHSAIDRVNGLAVNGASLAVSPLFTK 60
Query: 380 LAQRK-EDR--RARLQAQFA 396
L R DR + LQ FA
Sbjct: 61 LHVRNFGDRLTQTTLQELFA 80
>gi|452239|dbj|BAA05461.1| PES4 PAB-like protein [Saccharomyces cerevisiae]
Length = 555
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 188/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCIDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--------- 193
+ + K GFV F++E++A+ I+ N K++ G K+ R
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 194 -----DTEINKSKFTN---------------------VYVKNLSESTTEEDLQKSFGEYG 227
+T I K + N +++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ F E+A+R +N ++V
Sbjct: 434 TYSGFIKFRNFEDATRIFNFLNNRLV 459
>gi|349577937|dbj|GAA23104.1| K7_Pes4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 611
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 188/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L ++F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKEIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK IR+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--------- 193
+ + K GFV F++E++A+ I+ N K++ G K+ R
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 194 -----DTEINKSKFTN---------------------VYVKNLSESTTEEDLQKSFGEYG 227
+T I K + N +++KNL TT +D+ F E G
Sbjct: 268 SRLDAETIIEKEQSLNEKHSKGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + + FV ++NS D+ +A++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D S
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSS 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SG + F E+A+R +N ++V
Sbjct: 434 TYSGLIKFRNFEDATRIFNFLNNRLV 459
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L VT L LF++ G V++V L + + Y +V+F+ +EA A+
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVI----LKQKPTSCYAFVDFTLQEEAETAVRDF 71
Query: 86 NFTPLNGKPIRVMYSHRDP-SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
N+T LNG+ I V + S SG GN+FIK LD++ID LH+ F+ +G I+SC++
Sbjct: 72 NYTKLNGETIIVTRTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCRIP 131
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN-----K 199
T LNGQ +G+G+VQF +E A+ A+++L +N K + +G FL++ ER
Sbjct: 132 T-LNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPLSAAFQNNLD 190
Query: 200 SKFTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
S FTNV+VKNL ++ T L + F E+G +TSA ++ + + G+V + A R
Sbjct: 191 SSFTNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAVR 245
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
AV L G+ K V ++ +ER +K E+
Sbjct: 246 AVVGLCGRTIFGKRLSVCRSLSPAERANFIKKPIEE 281
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 20/275 (7%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I + NL + + L FS G +++ + + Y FV F +E A+ A+ N
Sbjct: 16 IHVANLPPTVTVEFLKSLFSEAGTVINVILK---QKPTSCYAFVDFTLQEEAETAVRDFN 72
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LN + + V R S N+++K L ES L + F YG I S
Sbjct: 73 YTKLNGETIIVT---RTTAPVVSAISSGQGNLFIKGLDESIDCLQLHELFANYGEIVSCR 129
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
+ +G+ + FG+V F +DA A++ L + K +G K+SER L F+
Sbjct: 130 I-PTLNGQPRGFGYVQFLKQEDAEHAMKELADSTVNGKPIQIGPFLKRSERPL--SAAFQ 186
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDE-KLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
N+ + N+++KNL D+I+ L +LF FG +TS +++ + R G+V
Sbjct: 187 NNLDSSF-----TNVFVKNLPDNINTLLSLLRLFHEFGDVTSARIVPE-----RHIGYVM 236
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
S E A RA++ + G+ + K L V + +R
Sbjct: 237 MSEHEAAVRAVVGLCGRTIFGKRLSVCRSLSPAER 271
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L++ L+ ++ QL++LF G++VS R+ R G+GYV F ++A A
Sbjct: 97 GQGNLFIKGLDESIDCLQLHELFANYGEIVSCRIPTLNGQPR--GFGYVQFLKQEDAEHA 154
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRK--------------SGAGNIFIKNLDKAIDH-K 126
++ L + +NGKPI++ P L++ S N+F+KNL I+
Sbjct: 155 MKELADSTVNGKPIQI-----GPFLKRSERPLSAAFQNNLDSSFTNVFVKNLPDNINTLL 209
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
+L F FG++ S ++ + + G+V E+A +A+ L G + K++ V
Sbjct: 210 SLLRLFHEFGDVTSARIVPE-----RHIGYVMMSEHEAAVRAVVGLCGRTIFGKRLSVCR 264
Query: 187 FLRKQERDTEINKS 200
L ER I K
Sbjct: 265 SLSPAERANFIKKP 278
>gi|367013040|ref|XP_003681020.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
gi|359748680|emb|CCE91809.1| hypothetical protein TDEL_0D02250 [Torulaspora delbrueckii]
Length = 622
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 181/387 (46%), Gaps = 54/387 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+L++GDLE +VT++ L D+F + + SV++C D ++ +SLGYGY+NF+N+++A +A
Sbjct: 96 VVALFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAEKAT 155
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
E N+ P+ G+ +R+M S R+ RK+ N+F NL D + + +DTF +G IL
Sbjct: 156 EEFNYRPIEGQEVRIMPSLRNSFYRKNVGTNVFFSNLPLEDSRLTTRVFYDTFKKYGKIL 215
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF---LRKQ---- 191
SCK+ + K GF+ F+N++SA+K I+ NG +V G HF RK
Sbjct: 216 SCKL-----DKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKDFRKYPEFE 270
Query: 192 --------------------------ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGE 225
+RD+ V+VKNL T E++ F
Sbjct: 271 KRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNEEILDFFSN 330
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285
G + S + S + FV ++ D +++++ N K+F ++ V KA K
Sbjct: 331 IGPVKSVFSSKAPKFNS-LWAFVTYKRGSDTSKSIQFYNDKEFKNRRLIVSKAVPK---- 385
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCKVMRDPSGI 344
E K+Q N K Q I ++ +++E L QL I +
Sbjct: 386 -EGKNQSPSNYKNYKTIVQ-----IDDVSPVLNEEFLSQLCIQERIKINKLHITSFNEKT 439
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMV 371
SGF+ T +A+R +N +++
Sbjct: 440 LTYSGFIKCKTKNDATRVFASLNNRLI 466
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 43/327 (13%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172
+FI +L+ ++ L D F F ++ S K+ D N G+S GYG++ F N E A+KA E+
Sbjct: 99 LFIGDLEPSVTENMLRDIFGKFRSLTSVKICLDSNSGKSLGYGYLNFANSEDAEKATEEF 158
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS---ESTTEEDLQKSFGEYGTI 229
N + ++V + LR ++ K+ TNV+ NL T +F +YG I
Sbjct: 159 NYRPIEGQEVRIMPSLR----NSFYRKNVGTNVFFSNLPLEDSRLTTRVFYDTFKKYGKI 214
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S + K K GF+ F N A + ++ NGK+F + G K R+
Sbjct: 215 LSCKL-----DKRKDIGFIYFNNDQSARKVIKDYNGKEFFGNKVLCGIHFDKDFRKYP-- 267
Query: 290 HQFEQNM------------------------KEAADKFQGAN-LYIKNLDDSIDDEKLKQ 324
+FE+ + +++ + N +++KNL +E++
Sbjct: 268 -EFEKRISNLDSITVAMEELTTEDSNKVVLQRDSGSQVPHPNAVFVKNLPMDCTNEEILD 326
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384
FS G + S + P S + FV + + S+++ N K ++ L V+ A K
Sbjct: 327 FFSNIGPVKSVFSSKAPKFNSLWA-FVTYKRGSDTSKSIQFYNDKEFKNRRLIVSKAVPK 385
Query: 385 EDRRARLQAQFAQMRPVAMASTVAPRM 411
E + + + + + V+P +
Sbjct: 386 EGKNQS-PSNYKNYKTIVQIDDVSPVL 411
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 199/418 (47%), Gaps = 38/418 (9%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 288 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 347
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G+ + V + + PS +++ +++ NL +++
Sbjct: 348 PRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 406
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 407 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 466
Query: 185 ---------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+ + + +N+YV N+ S + L + F +G IT A V+
Sbjct: 467 VSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVV 526
Query: 236 RDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
D D +K +GF+ F +S+ A +A+ A+NG + V R L
Sbjct: 527 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASI 578
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+ + + LYI NL S+ +K+ LF+PFG IT KV+ ++ V ++
Sbjct: 579 SAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYA 631
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
A +A+ M+G MV K L V ++ + QA ++ + MA+ R+P
Sbjct: 632 DAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNAS--QAGGKPIKEIDMANLYVGRVP 687
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 182/393 (46%), Gaps = 40/393 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 613
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 614 GQIT--KVLMNLE-----YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV----KRSELCT 662
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 663 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 717
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 718 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 776
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 777 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 834
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
L MNG + L V +A D + A F
Sbjct: 835 LTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 867
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 669 GGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRFD 722
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIFI 116
N AA A++ L+ + G + V + P+ + G N+++
Sbjct: 723 NPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLYV 781
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 782 SHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGY 841
Query: 176 LLNDKQVYVGHFL 188
L+ GH L
Sbjct: 842 PLD------GHVL 848
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 773 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 832
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
AL +N PL+G + V + P S + + H +HD
Sbjct: 833 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHD 875
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G
Sbjct: 1 RQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GG 59
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
S+G GFV FS+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 60 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 113
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
KQ+R I + + N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV
Sbjct: 13 KQDR---ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVC 68
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 69 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 115
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 82
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER ++ TN Y++ ++
Sbjct: 83 NGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 116
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+ +
Sbjct: 25 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEM 82
Query: 86 NFTPLNGKPIRVMYSHR 102
N + KP+ V + R
Sbjct: 83 NGRIVATKPLYVALAQR 99
>gi|401625916|gb|EJS43897.1| pes4p [Saccharomyces arboricola H-6]
Length = 611
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 188/386 (48%), Gaps = 59/386 (15%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
L++GDL VT+ L ++F + VS +VC D T++SLG+GY+NF + +EA +A+E L
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSCK 142
N+T +NGK +R+M S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTEINGKEVRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--------- 193
+ + K GFV F++E++A+ I+ N K++ G K+ R
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 194 -----DTEINKSKFTN---------------------VYVKNLSESTTEEDLQKSFGEYG 227
+T I K + N +++KNL TT +D+ F E G
Sbjct: 268 SRLDSETIIEKEQALNDKKVQRNDGDSKNNLSSSQNSIFIKNLPTITTRDDILNFFSEVG 327
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I S + + + F+ +++ +D+ RA++ N F K+ V +AQ K ER
Sbjct: 328 PIKS-IYLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDKEERAKF 386
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD--PSGIS 345
++ Q + + L+++NL + E LK L +I K+ D +
Sbjct: 387 IESQ------------KISTLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQMDGYNENSA 433
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMV 371
SG++ F E+A+R +N ++V
Sbjct: 434 TYSGYIKFKNFEDATRIFNFLNNRLV 459
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 37/308 (12%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+FI +L + + + L + F F + +S KV D + +S G+G++ FD++E A+KA+E+L
Sbjct: 93 LFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKAMEEL 152
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSEST---TEEDLQKSFGEYGTI 229
N +N K+V + LR +T K+ TNV+ NL + T +F YG I
Sbjct: 153 NYTEINGKEVRIMPSLR----NTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKI 208
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG------------- 276
S + D + K GFV FE+ A ++ N F K+ G
Sbjct: 209 LSCKL----DSR-KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNF 263
Query: 277 ---KAQKKSERELELKHQFEQNMKEAADKFQGANL-------YIKNLDDSIDDEKLKQLF 326
K++ SE +E + + D NL +IKNL + + F
Sbjct: 264 ETQKSRLDSETIIEKEQALNDKKVQRNDGDSKNNLSSSQNSIFIKNLPTITTRDDILNFF 323
Query: 327 SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
S G I S + + + F+ + + E++ RA+ N K L VA AQ KE+
Sbjct: 324 SEVGPIKSI-YLSTATKVKYLWAFITYKSGEDSERAIKRYNNFYFRGKKLLVARAQDKEE 382
Query: 387 RRARLQAQ 394
R +++Q
Sbjct: 383 RAKFIESQ 390
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 26/170 (15%)
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARA 259
K +++ +L E+ TEE L++ FG++ + SA V D KS G++NF++ ++A +A
Sbjct: 89 KLVPLFIGDLHETVTEETLKEIFGKFPSFVSAKVCLDSVTKKSLGHGYLNFDDKEEAEKA 148
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---DDS 316
+E LN + + KE + + + + F +N G N++ NL +
Sbjct: 149 MEELNYTEINGKEVRIMPSLRNT--------TFRKNF--------GTNVFFSNLPLNNPL 192
Query: 317 IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366
+ FS +G I SCK+ + GFV F E+ +R +++M
Sbjct: 193 LTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFED-EKTARNVIKM 236
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/418 (28%), Positives = 199/418 (47%), Gaps = 38/418 (9%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 200 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 259
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G+ + V + + PS +++ +++ NL +++
Sbjct: 260 PRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 318
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 378
Query: 185 ---------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235
+ + + +N+YV N+ S + L + F +G IT A V+
Sbjct: 379 VSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVV 438
Query: 236 RDGDGKS-KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
D D S K +GF+ F +S+ A +A+ A+NG + V R L
Sbjct: 439 ADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV--------RVAGLSPSASI 490
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
+ + + LYI NL S+ +K+ LF+PFG IT KV+ ++ V ++
Sbjct: 491 SAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL-----MNLEYSLVWYA 543
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMP 412
A +A+ M+G MV K L V ++ + QA ++ + MA+ R+P
Sbjct: 544 DAPSAIKAVQHMDGYMVEGKRLVVKRSELCTTNAS--QAGGKPIKEIDMANLYVGRVP 599
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 182/393 (46%), Gaps = 40/393 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 466 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 525
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 526 GQI--TKVLMNLE-----YSLVWYADAPSAIKAVQHMDGYMVEGKRLVV----KRSELCT 574
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 575 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 629
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 630 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 688
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 689 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 746
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
L MNG + L V +A D + A F
Sbjct: 747 LTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 779
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 581 GGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRFD 634
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIFI 116
N AA A++ L+ + G + V + P+ + G N+++
Sbjct: 635 NPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLYV 693
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 694 SHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGY 753
Query: 176 LLNDKQVYVGHFL 188
L+ GH L
Sbjct: 754 PLD------GHVL 760
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 685 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 744
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
AL +N PL+G + V + P S + + H +HD
Sbjct: 745 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHD 787
>gi|403164939|ref|XP_003324991.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165464|gb|EFP80572.2| hypothetical protein PGTG_06528 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 449
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 137/265 (51%), Gaps = 10/265 (3%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQV--VSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
S++VGDL ++T Q+ +F+Q+ + +S+R R + ++ Y YV + +A++A+ A+
Sbjct: 174 SVFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAIKKLRAYAYVTYHSAEDASTAI 233
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N T GKP RV+ D L+ + NI++ L ++ A HDTFS FG ILS K
Sbjct: 234 REFNQTVFEGKPCRVVRVQHD-DLKSNKEANIYVGGLPPSLTGVAFHDTFSEFGEILSSK 292
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK---QVYVGHFLRKQERDTEINK 199
+ + S +GF+Q+ E A+ AI+K NG L+ K + Q + +
Sbjct: 293 LVVNPKNVSNPFGFIQYATAEEAEIAIQKTNGATLDMKDSTRPISTSLFEGQAKPPR--Q 350
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
F NVY KN+ + T + E+G TS + +D DGK GF NF N++DA +
Sbjct: 351 PPFHNVYFKNIPKDITRRCFDQFCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDAVKI 410
Query: 260 VEALNGKKFDDKEWYVGKAQKKSER 284
VE + +++ + +A + ER
Sbjct: 411 VEYI--RQYAPMGLHAARAYTRGER 433
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 118/280 (42%), Gaps = 27/280 (9%)
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
TPLN P + ++ R S+ S +F+ +L +I H+ + FS IL +
Sbjct: 155 TPLNHFPPQ--HASRTTSVDHS----VFVGDLPGSITHEQIVKVFSQVSPILKISIRYPR 208
Query: 148 NGQSK---GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTN 204
+ K Y +V + + E A AI + N + K V +R Q D + NK N
Sbjct: 209 SQAIKKLRAYAYVTYHSAEDASTAIREFNQTVFEGKPCRV---VRVQHDDLKSNKE--AN 263
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
+YV L S T +F E+G I S+ ++ + S FGF+ + +++A A++ N
Sbjct: 264 IYVGGLPPSLTGVAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEAEIAIQKTN 323
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA-ADKFQGANLYIKNLDDSIDDEKLK 323
G D K+ S R + FE K F N+Y KN+ I
Sbjct: 324 GATLDMKD---------STRPISTS-LFEGQAKPPRQPPFH--NVYFKNIPKDITRRCFD 371
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
Q FG TS + +D G G GF FS +A + +
Sbjct: 372 QFCEEFGPTTSTFLKKDADGKPMGIGFANFSNTNDAVKIV 411
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 184 VGHFLRKQ-ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM---RDGD 239
+ HF + R T ++ S V+V +L S T E + K F + I +
Sbjct: 157 LNHFPPQHASRTTSVDHS----VFVGDLPGSITHEQIVKVFSQVSPILKISIRYPRSQAI 212
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
K + + +V + +++DA+ A+ N F+ K R + ++H ++ KEA
Sbjct: 213 KKLRAYAYVTYHSAEDASTAIREFNQTVFEGKPC----------RVVRVQHDDLKSNKEA 262
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
N+Y+ L S+ FS FG I S K++ +P +S GF+ ++T EEA
Sbjct: 263 -------NIYVGGLPPSLTGVAFHDTFSEFGEILSSKLVVNPKNVSNPFGFIQYATAEEA 315
Query: 360 SRALLEMNG 368
A+ + NG
Sbjct: 316 EIAIQKTNG 324
>gi|320581163|gb|EFW95384.1| poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 716
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 169/346 (48%), Gaps = 46/346 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
TSL+VGDL+ ++++ L ++FN+ ++SV++ D T SLGYGYVN+SN +A A+E
Sbjct: 180 TSLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAME 239
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+T + IR+M S RD S R+ N+F+ NL + + L+D F GN+LSCK
Sbjct: 240 SLNYTTIGSSEIRIMPSLRDKSQRERIGANVFLSNLSSHLTTRQLYDRFRKHGNVLSCKY 299
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD----TEINK 199
+ SK F+ F+++E A + ++ N L+ + VYVG + K++R+ T
Sbjct: 300 DS-----SKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGATASAS 354
Query: 200 SKFT----------------------------NVYVKNLSESTTEEDLQKSFGEYGTITS 231
SK T +++V+NL + E ++ YG + S
Sbjct: 355 SKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYGPVLS 414
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ R K+ C+ V N + +AV LN + + ++ +V +A K E+ K +
Sbjct: 415 -VLARKVPKKNGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEKSYSRKQE 473
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKV 337
+ K + I L+ + +K + FGSI S ++
Sbjct: 474 VQPKYK--------LKILITGLNVNTHKDKFQNWCLTFGSIKSVEL 511
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 138/309 (44%), Gaps = 37/309 (11%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++F+ +LDK++ L + F+ + +LS K+ D G S GYG+V + NE+ A A+E
Sbjct: 181 SLFVGDLDKSLSELDLKNVFNKYPGLLSVKIPADCQTGNSLGYGYVNYSNEDQANFAMES 240
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN + ++ + LR + + I NV++ NLS T L F ++G + S
Sbjct: 241 LNYTTIGSSEIRIMPSLRDKSQRERIG----ANVFLSNLSSHLTTRQLYDRFRKHGNVLS 296
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL----- 286
SK F++FE+ + A V+ N D + YVG K +REL
Sbjct: 297 CKY-----DSSKQQAFIHFESKEVAYEVVKTYNHTTLDGRLVYVGLHILKKDRELFGATA 351
Query: 287 ----ELKHQFE-----------QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331
+L + + QN K D +++++NL +I++ +K L P+G
Sbjct: 352 SASSKLTEKRDISQIPTFSPTFQNTKHKNDISTHYSIFVRNLPLNIEEHVIKSLVEPYGP 411
Query: 332 ITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED---- 386
+ S + P G V S E +A+ +N + + L+V A KE+
Sbjct: 412 VLSVLARKVPK--KNGCWALVTLSNQESVDKAVSHLNMVEINKQQLFVTRAIPKEEKSYS 469
Query: 387 RRARLQAQF 395
R+ +Q ++
Sbjct: 470 RKQEVQPKY 478
>gi|410074177|ref|XP_003954671.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
gi|372461253|emb|CCF55536.1| hypothetical protein KAFR_0A00980 [Kazachstania africana CBS 2517]
Length = 642
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 185/393 (47%), Gaps = 50/393 (12%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T L++G L +VT+S L +LFN+ + SV++C D T++SLGYGY+NFS + E
Sbjct: 91 QKKVTPLFIGGLGPHVTESMLKELFNKFSSLYSVKICYDSETKKSLGYGYLNFSGSDEID 150
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFG 136
R +E N+T + G I++M S R+ RK+ NIF NL + + + +DTF +G
Sbjct: 151 RVIEEFNYTEVFGSEIKIMPSLRNSLYRKNIGTNIFFSNLPLENSELTTRVFYDTFKKYG 210
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG----------- 185
ILSCK+ K GFV +++++ A++ IEK N ++ G
Sbjct: 211 KILSCKL-----DHRKNIGFVYYEDDKVAREVIEKYNNTTFFGAKILCGLHFDKELRNFP 265
Query: 186 -----------HFLRKQERDTEINKSKFTN-----------VYVKNLSESTTEEDLQKSF 223
H + + E +T K+ V+VKNL TTE+++ F
Sbjct: 266 DFEKRKSYLDKHIILEDELNTVEGKTSMLTKIKSSLPHPNAVFVKNLPIDTTEDEILDFF 325
Query: 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
G + S + KS+ + F+ ++ D RA+E L+GKK+ D++ V KA+ + +
Sbjct: 326 SVVGPVKSVFTSKVLKFKSE-WAFITYKKGSDTERAIEELDGKKYKDRKISVTKAKARQQ 384
Query: 284 RELELKHQFEQN----MKEAADKFQGANLYIKNLDDSIDDEKLKQL-FSPFGSITSCKVM 338
+ + Q +Q +K+A+ K + + NL E L +L K+
Sbjct: 385 QHHHHQQQQQQQQQPIVKKASTK---TTIQLNNLSTICTKEFLVELCIQEHLKFDRLKIT 441
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
GF F T ++A + +NGK+V
Sbjct: 442 EYEPDSGTFKGFATFKTKDDAKKFYNYLNGKLV 474
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNE 162
DPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 61
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 62 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +
Sbjct: 12 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 70
Query: 366 MNGKMVVSKPLYVALAQRKEDRRA 389
MNG ++ + ++V + +++R A
Sbjct: 71 MNGMLLNDRKVFVGRFKSRKEREA 94
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D + KS N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE
Sbjct: 3 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQ 61
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ A RA+E +NG +D++ +VG+ + + ERE E
Sbjct: 62 EAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 95
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A RA
Sbjct: 10 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 67
Query: 82 LEMLNFTPLNGKPIRV 97
+E +N LN + + V
Sbjct: 68 IEKMNGMLLNDRKVFV 83
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%), Gaps = 3/108 (2%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G+GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AI
Sbjct: 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAI 62
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTT 215
EK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN +T
Sbjct: 63 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGST 110
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
N++IKNLD SID++ L FS FG+I SCKV+ D +G S+G GFV F T E A RA+ +
Sbjct: 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 64
Query: 366 MNGKMVVSKPLYVALAQRKEDRRARLQAQ 394
MNG ++ + ++V + +++R A L A+
Sbjct: 65 MNGMLLNDRKVFVGRFKSRKEREAELGAR 93
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 11/110 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+++KNL +S + L +F +G I S V+ D +G SK +GFV+FE + A RA+E +
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 65
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
NG +D++ +VG+ + + ERE EL + A +F N+YIKN
Sbjct: 66 NGMLLNDRKVFVGRFKSRKEREAELGAR--------AKEF--TNVYIKNF 105
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
G+ ++++ +L+ ++ + LYD F+ G ++S +V D + S GYG+V+F + A R
Sbjct: 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAER 60
Query: 81 ALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNL 119
A+E +N LN + + V + R + GA N++IKN
Sbjct: 61 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNF 105
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 200/429 (46%), Gaps = 49/429 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 287 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 346
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G+ + V + + PS +++ +++ NL +++
Sbjct: 347 PRCASEAIKRMNGRLVEGRALEVRVAGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 405
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 406 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 465
Query: 185 --------------------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
+ + + +N+YV N+ S + L + F
Sbjct: 466 VSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFL 525
Query: 225 EYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G IT A V+ D D +K +GF+ F +S+ A +A+ A+NG + V
Sbjct: 526 PFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV-------- 577
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R L + + + LYI NL S+ +K+ LF+PFG IT KV+
Sbjct: 578 RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL----- 630
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAM 403
++ V ++ A++A+ M+G MV K L V ++ + QA ++ + M
Sbjct: 631 MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNAS--QAGGKPIKEIDM 688
Query: 404 ASTVAPRMP 412
A+ R+P
Sbjct: 689 ANLYVGRVP 697
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 182/393 (46%), Gaps = 40/393 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 504 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 563
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 564 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 623
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 624 GQIT--KVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVV----KRSELCT 672
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 673 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 727
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 728 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 786
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 787 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 844
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
L MNG + L V +A D + A F
Sbjct: 845 LTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 877
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 678 AGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRF 731
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIF 115
N AA A++ L+ + G + V + P+ + G N++
Sbjct: 732 DNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLY 790
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 791 VSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 850
Query: 175 MLLNDKQVYVGHFL 188
L+ GH L
Sbjct: 851 YPLD------GHVL 858
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 783 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 842
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
AL +N PL+G + V + P S + + H +HD
Sbjct: 843 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHD 885
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 200/429 (46%), Gaps = 49/429 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 200 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 259
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G ++V + + PS +++ +++ NL +++
Sbjct: 260 PRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 318
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 378
Query: 185 --------------------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
+ + + +N+YV N+ S + L + F
Sbjct: 379 VSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFL 438
Query: 225 EYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G IT A V+ D D +K +GF+ F +S+ A +A+ A+NG + V
Sbjct: 439 PFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV-------- 490
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R L + + + LYI NL S+ +K+ LF+PFG IT KV+
Sbjct: 491 RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL----- 543
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAM 403
++ V ++ A++A+ M+G MV K L V ++ + QA ++ + M
Sbjct: 544 MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNAS--QAGGKPIKEIDM 601
Query: 404 ASTVAPRMP 412
A+ R+P
Sbjct: 602 ANLYVGRVP 610
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 182/393 (46%), Gaps = 40/393 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 417 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 476
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 477 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 536
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 537 GQI--TKVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVV----KRSELCT 585
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 586 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 640
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 641 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 699
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 700 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 757
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
L MNG + L V +A D + A F
Sbjct: 758 LTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 790
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 591 AGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRF 644
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIF 115
N AA A++ L+ + G + V + P+ + G N++
Sbjct: 645 DNPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLY 703
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174
+ +L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 704 VSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 763
Query: 175 MLLNDKQVYVGHFL 188
L+ GH L
Sbjct: 764 YPLD------GHVL 771
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 696 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 755
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
AL +N PL+G + V + P S + + H +HD
Sbjct: 756 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHD 798
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 200/429 (46%), Gaps = 49/429 (11%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF GQ+V RV D T S GYG+V +S+
Sbjct: 284 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 343
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYS--------HRDPSLRKSGAGNIFIKNLDKAIDHK 126
+ A+ A++ +N + G ++V + + PS +++ +++ NL +++
Sbjct: 344 PRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPS-KETDMAKLYVCNLSLSMNTD 402
Query: 127 ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV- 184
L F FG + + KVA D G SKGYGFVQ+ + A +A+ LNG L++ +++ V
Sbjct: 403 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 462
Query: 185 --------------------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224
+ + + +N+YV N+ S + L + F
Sbjct: 463 VSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFL 522
Query: 225 EYGTITSAVVMRDGDG-KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G IT A V+ D D +K +GF+ F +S+ A +A+ A+NG + V
Sbjct: 523 PFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGEMIIV-------- 574
Query: 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG 343
R L + + + LYI NL S+ +K+ LF+PFG IT KV+
Sbjct: 575 RVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPFGQIT--KVL----- 627
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAM 403
++ V ++ A++A+ M+G MV K L V ++ + QA ++ + M
Sbjct: 628 MNLEYSLVWYADAPSATKAVQHMDGYMVEGKRLVVKRSELCTTNAS--QAGGKPIKEIDM 685
Query: 404 ASTVAPRMP 412
A+ R+P
Sbjct: 686 ANLYVGRVP 694
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 182/393 (46%), Gaps = 40/393 (10%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV ++ +++ +L +LF G++ RV D T + GYG++ F++++ A +A+
Sbjct: 501 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 560
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIFIKNLDKAIDHKALHDTFSAF 135
+N + G+ I V + PS S ++I NL +++ + + F+ F
Sbjct: 561 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKMVNLFAPF 620
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I KV +L Y V + + SA KA++ ++G ++ K++ V ++ E T
Sbjct: 621 GQI--TKVLMNLE-----YSLVWYADAPSATKAVQHMDGYMVEGKRLVV----KRSELCT 669
Query: 196 ---------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
I + N+YV + S TE+ F +G + A + R + +G
Sbjct: 670 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR-----FQRYG 724
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNMKEAADKF 303
V F+N AA A++ L+G + V A +E L Q N + D
Sbjct: 725 MVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDM- 783
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
NLY+ +L +++E+L LF P G IT KV+ + +G+S+G GFV F+ A+ A
Sbjct: 784 --TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVA 841
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
L MNG + L V +A D + A F
Sbjct: 842 LTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHF 874
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFS 73
GG + +LYVG + +++T+ Q DLF G+VV R+ R +R YG V F
Sbjct: 676 GGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFR---FQR---YGMVRFD 729
Query: 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-----------------NIFI 116
N AA A++ L+ + G + V + P+ + G N+++
Sbjct: 730 NPSCAAAAIDHLDGYQIGGSILAVRVAGL-PAESNAAKGALTSQMSSNEQGQIDMTNLYV 788
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+L ++++ L D F G I KV + G SKG+GFV+F + SA A+ +NG
Sbjct: 789 SHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGY 848
Query: 176 LLNDKQVYVGHFL 188
L+ GH L
Sbjct: 849 PLD------GHVL 855
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
Q T+LYV L + V + +L DLF GQ+ +V + T S G+G+V F++A AA
Sbjct: 780 QIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAA 839
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHD 130
AL +N PL+G + V + P S + + H +HD
Sbjct: 840 VALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFY--------SHFTMHD 882
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ G + ++++ V +AQKKSER+ ELK ++EQ E ++QG NLY+KNL D+I+DE
Sbjct: 5 SVPGSEKVEQKFTVCRAQKKSERQAELKRRYEQYKAERIQRYQGVNLYVKNLHDTINDET 64
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ F +G+ITS KVM D G S+G GFV F +EA++A++EMN K++ +KPLYVALA
Sbjct: 65 LRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALA 124
Query: 382 QRKEDRRARLQAQFAQ-MRPVAMASTVAPRMPMYPPGA 418
QRKEDR+A+L +Q+ Q + + M + MY P +
Sbjct: 125 QRKEDRKAQLASQYMQRLAAMRMQNPAGLMGTMYAPAS 162
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
+Q + I + + N+YVKNL ++ +E L+ +F YG ITSA VM D G+SK FGFV
Sbjct: 36 EQYKAERIQRYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVC 95
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
FE +D+A +AV +N K ++K YV AQ+K +R+ +L Q+ Q +
Sbjct: 96 FEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKAQLASQYMQRL 142
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 55/85 (64%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNL I+ + L F ++GNI S KV D +G+SKG+GFV F+ + A KA+ ++
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEI 197
N ++ +K +YV RK++R ++
Sbjct: 110 NNKIIENKPLYVALAQRKEDRKAQL 134
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
++ +LYV +L + D L F G + S +V D RS G+G+V F A EA
Sbjct: 45 RYQGVNLYVKNLHDTINDETLRSNFESYGNITSAKVMCD-EHGRSKGFGFVCFEKADEAT 103
Query: 80 RALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL 119
+A+ +N + KP+ V + R RK+ + +++ L
Sbjct: 104 KAVVEMNNKIIENKPLYVALAQRKED-RKAQLASQYMQRL 142
>gi|14571727|emb|CAC42820.1| Poly(A)-binding protein cytoplasmic 5 [Mus musculus]
Length = 119
Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/120 (60%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
LGYGYVNF +A AL +NF +NGKP R+M+S D LRKSG GNIFIKNLDK ID
Sbjct: 1 LGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTID 60
Query: 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
++AL FSAFGNILSCKV D NG SKGY +V FD+ +A +AI +NG+ LN++QVYV
Sbjct: 61 NRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQVYV 119
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
+G+VNF DA A+ +N + K + + +Q K
Sbjct: 3 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLR----------------KSG 46
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
N++IKNLD +ID+ L LFS FG+I SCKV+ D +G S+G +V F + A+RA+
Sbjct: 47 VGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIW 105
Query: 365 EMNGKMVVSKPLYV 378
+NG + ++ +YV
Sbjct: 106 HVNGVRLNNRQVYV 119
Score = 58.9 bits (141), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 153 GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSE 212
GYG+V F A+ A+ +N L+N K L + D + KS N+++KNL +
Sbjct: 2 GYGYVNFRFPADAEWALNTMNFDLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDK 57
Query: 213 STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272
+ L F +G I S V+ D +G SK + +V+F++ A RA+ +NG + ++++
Sbjct: 58 TIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHVNGVRLNNRQ 116
Query: 273 WYV 275
YV
Sbjct: 117 VYV 119
Score = 40.4 bits (93), Expect = 1.8, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAAR 80
G ++++ +L+ + + L+ LF+ G ++S +V C D ++ GY YV+F + A R
Sbjct: 46 GVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSK---GYAYVHFDSLAAANR 102
Query: 81 ALEMLNFTPLNGKPIRV 97
A+ +N LN + + V
Sbjct: 103 AIWHVNGVRLNNRQVYV 119
>gi|255720292|ref|XP_002556426.1| KLTH0H12958p [Lachancea thermotolerans]
gi|238942392|emb|CAR30564.1| KLTH0H12958p [Lachancea thermotolerans CBS 6340]
Length = 639
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 42/293 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SL++GDL+ VT+ L F+ + SV++C D T++SLGYGY+NF++AQEA A+E
Sbjct: 94 SSLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIE 153
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
++ L GK +R+M S R+ RK+ N+F NL + A+ + +++F +G +LS
Sbjct: 154 KFSYVKLFGKEVRIMPSMRNSYFRKNIGTNVFFTNLPLENPALTTRVFYESFRKYGRVLS 213
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---EI 197
CK+ + K GFV F+++ SA+KAI+ N ++ G K R + E
Sbjct: 214 CKL-----DRRKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQFEK 268
Query: 198 NKSKF------------------------------TNVYVKNLSESTTEEDLQKSFGEYG 227
+SK T+V+VKNL EDL F + G
Sbjct: 269 RRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKVG 328
Query: 228 TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
I S V D + +GF+ ++ S D RA+E LNG F K V +A K
Sbjct: 329 PIKS-VYTSKADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRAVK 380
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 37/302 (12%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++FI +LDK + K L FS F + S K+ D +S GYG++ F + + A +AIEK
Sbjct: 95 SLFIGDLDKGVTEKMLLHAFSGFKTLASVKICIDSETKKSLGYGYLNFTSAQEADEAIEK 154
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL---SESTTEEDLQKSFGEYGT 228
+ + L K+V + +R ++ K+ TNV+ NL + + T +SF +YG
Sbjct: 155 FSYVKLFGKEVRIMPSMR----NSYFRKNIGTNVFFTNLPLENPALTTRVFYESFRKYGR 210
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD----------DKEWYVGKA 278
+ S + R K GFV FE+ A +A++ N +++ DK+
Sbjct: 211 VLSCKLDR-----RKNIGFVYFESDISAKKAIDDFNSREYFGNKIACGLHFDKDIRKSPQ 265
Query: 279 QKKSERELE----LKHQFE-------QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327
+K +LE +K E ++ ++ ++++KNL + +E L FS
Sbjct: 266 FEKRRSKLEGLTVIKESLESEACTDSNSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFS 325
Query: 328 PFGSITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
G I S V + + S GF+ + + RAL E+NG + + K + V A +
Sbjct: 326 KVGPIKS--VYTSKADVYTTSWGFITYKRSRDTIRALEELNGAIFMGKRVEVTRAVKYNG 383
Query: 387 RR 388
R
Sbjct: 384 ER 385
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYV 70
N G + +TS++V +L V + L + F+++G + SV + D+ T +G++
Sbjct: 292 NSLGDSPGPTPSTSVHVKNLPIGVCNEDLLNYFSKVGPIKSVYTSKADVYT---TSWGFI 348
Query: 71 NFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN 113
+ +++ RALE LN GK + V + + RKS + N
Sbjct: 349 TYKRSRDTIRALEELNGAIFMGKRVEVTRAVKYNGERKSTSTN 391
>gi|324525699|gb|ADY48582.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 121
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 83/106 (78%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ SLYVGDL +VT++ L++ F+ G V+S+RVCRD TRRSLGY YVNF +A R
Sbjct: 16 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAER 75
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
AL+ +NF + GKPIR+M+S RDPS+R+SGAGNIFIKNLDK+ID+K
Sbjct: 76 ALDTMNFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNK 121
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L + FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 19 ASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALD 78
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
+N ++ K + + +RD + +S N+++KNL +S
Sbjct: 79 TMNFDVMYGKPIRIMW----SQRDPSMRRSGAGNIFIKNLDKS 117
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVAFSTPEEA 359
+ A+LY+ +L + + L + FS G + S +V RD I+R G +V F P +A
Sbjct: 16 YPMASLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRD--AITRRSLGYAYVNFQQPADA 73
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRR 388
RAL MN ++ KP+ + +QR R
Sbjct: 74 ERALDTMNFDVMYGKPIRIMWSQRDPSMR 102
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
++YV +L TE L + F G + S V RD +S + +VNF+ DA RA++
Sbjct: 20 SLYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDT 79
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+N K + +Q+ + +M+ + N++IKNLD SID++
Sbjct: 80 MNFDVMYGKPIRIMWSQR------------DPSMRRSG----AGNIFIKNLDKSIDNK 121
>gi|440293231|gb|ELP86374.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba invadens IP1]
Length = 538
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 175/352 (49%), Gaps = 25/352 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++V L NVT+S LY + QV SV V R+ ++ Y VN + + A +A+
Sbjct: 14 TVFVSGLTKNVTESLLYKEISAKFESQVASVHVSRNEHYDTAIAY--VNMNTHEAAKKAI 71
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E +N ++GKP+ + +S +D R N+F+KN+ K + K + D F FG I+S K
Sbjct: 72 ETMNGALIDGKPVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 131
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
++ + NG S G+G+V++ E+A KA+E N + K + K E+ T K+K
Sbjct: 132 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQT---KNKK 186
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS------AVVMRDGDGKSKCFGFVNFENSDDA 256
TN+YV N+ +S EE K F +G + V+ D GFV+FEN +DA
Sbjct: 187 TNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASKDEYPTAMGFVDFENEEDA 246
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD- 315
+A+ A E V K ER+ E + + + M K++ N+Y+K +D
Sbjct: 247 QKALTAPKNNVLGQGEIKVVYYMSKKERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDS 306
Query: 316 --SIDDEKLKQLFSPFGSITSCKVM---RDPSGISRGSGFVAFSTPEEASRA 362
S D +++ F+ G I S ++ + P+ ++ +V F++ E +A
Sbjct: 307 EHSTSDAEIRSAFADCGEIYSIRIKYFNKSPTDVA----YVCFTSQEGYDKA 354
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 132/291 (45%), Gaps = 38/291 (13%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGY----GFVQFDNEESAQKAI 169
+F+ L K + L+ SA +VA+ +++ Y +V + E+A+KAI
Sbjct: 15 VFVSGLTKNVTESLLYKEISA---KFESQVASVHVSRNEHYDTAIAYVNMNTHEAAKKAI 71
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E +NG L++ K V + L+ ++ TE TN++VKN+ ++ +++++Q F +G I
Sbjct: 72 ETMNGALIDGKPVNMFWSLKDFKQRTETQ----TNLFVKNIKKTVSQKEMQDVFMTFGEI 127
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVE--ALNGKKFDDKEWYVGKAQKKSERELE 287
S + + +G S FG+V + + A +AVE A K + + V K +K++
Sbjct: 128 ISVKLSVNENGASNGFGYVKYRTIEAALKAVENAAEIKAKIGEDNFIVAKFEKQT----- 182
Query: 288 LKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK------VMRDP 341
K + NLY+ N+D S+++E+ + F FG + +
Sbjct: 183 --------------KNKKTNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFASK 228
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
GFV F E+A +AL ++ + V K++R+ Q
Sbjct: 229 DEYPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVVYYMSKKERKREYQ 279
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 37/236 (15%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+V +++ V+ ++ D+F G+++SV++ + S G+GYV + + A +A+E
Sbjct: 101 TNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAALKAVE 159
Query: 84 MLNFTPLNGKPIRVMYSHRD------PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG- 136
N I+ + K+ N+++ N+DK+++ + F FG
Sbjct: 160 -------NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQFVKYFETFGP 212
Query: 137 ------NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
N A+ + GFV F+NEE AQKA+ +L ++ V +++ K
Sbjct: 213 LRKNPDNKFQVLFASK-DEYPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVVYYMSK 271
Query: 191 QERDTEIN------------KSKFTNVYVK--NLSE-STTEEDLQKSFGEYGTITS 231
+ER E K K N+YVK N SE ST++ +++ +F + G I S
Sbjct: 272 KERKREYQLKNNEIMASIKGKYKEFNMYVKTSNDSEHSTSDAEIRSAFADCGEIYS 327
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 194 DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
D + NK+ F + KN++ES +++ F + S V R+ + +VN
Sbjct: 8 DFDENKTVFVSGLTKNVTESLLYKEISAKFE--SQVASVHVSRN-EHYDTAIAYVNMNTH 64
Query: 254 DDAARAVEALNGKKFDDKE----WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLY 309
+ A +A+E +NG D K W + ++++E + NL+
Sbjct: 65 EAAKKAIETMNGALIDGKPVNMFWSLKDFKQRTETQ--------------------TNLF 104
Query: 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
+KN+ ++ ++++ +F FG I S K+ + +G S G G+V + T E A +A+
Sbjct: 105 VKNIKKTVSQKEMQDVFMTFGEIISVKLSVNENGASNGFGYVKYRTIEAALKAV 158
>gi|440293224|gb|ELP86367.1| polyadenylate-binding protein, putative [Entamoeba invadens IP1]
Length = 519
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 174/353 (49%), Gaps = 28/353 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+++V L NVT+S LY + QV SV V R+ YVN + + A +A+
Sbjct: 16 TIFVSSLSKNVTESLLYKEISAKFESQVASVHVSRN--EHYDTAIAYVNMNTHEAAKKAI 73
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E +N ++GK + + +S +D R N+F+KN+ K + K + D F FG I+S K
Sbjct: 74 ETMNGALIDGKTVNMFWSLKDFKQRTETQTNLFVKNIKKTVSQKEMQDVFMTFGEIISVK 133
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
++ + NG S G+G+V++ E+A KA+E N + K + K E+ T K+K
Sbjct: 134 LSVNENGASNGFGYVKYRTIEAALKAVE--NAAEIKAKIGEDNFIVAKFEKQT---KNKK 188
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITS------AVVMRDGDGKSKCFGFVNFENSDDA 256
TN+YV N+ +S EE K F +G + V+ D GFV+FEN +DA
Sbjct: 189 TNLYVSNIDKSVNEEQFVKYFETFGPLRKNPDNKFQVLFACDDKHPTAMGFVDFENEEDA 248
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERE---LELKHQFEQNMKEAADKFQGANLYIKNL 313
+A+ A E V +SER L+ + + N++ K++ N+YI L
Sbjct: 249 QKALTAPKNNVLGQGEIKVDYYMSRSERSRVWLQKSLEIKSNIQ---GKYKDFNMYINTL 305
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVM---RDPSGISRGSGFVAFSTPEEASRAL 363
+ D +++ F+ G I S +V + P+ I+ FV F++ E ++A+
Sbjct: 306 KEPTSDAEIRSAFADCGEIYSVRVKYYEKVPTSIA----FVCFTSQEAFNKAM 354
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 110/236 (46%), Gaps = 34/236 (14%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L+V +++ V+ ++ D+F G+++SV++ + S G+GYV + + A +A+E
Sbjct: 103 TNLFVKNIKKTVSQKEMQDVFMTFGEIISVKLSVN-ENGASNGFGYVKYRTIEAALKAVE 161
Query: 84 MLNFTPLNGKPIRVMYSHRDPSL------RKSGAGNIFIKNLDKAIDHKALHDTFSAFG- 136
N I+ + + K+ N+++ N+DK+++ + F FG
Sbjct: 162 -------NAAEIKAKIGEDNFIVAKFEKQTKNKKTNLYVSNIDKSVNEEQFVKYFETFGP 214
Query: 137 ------NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
N A D + GFV F+NEE AQKA+ +L ++ V +++ +
Sbjct: 215 LRKNPDNKFQVLFACD-DKHPTAMGFVDFENEEDAQKALTAPKNNVLGQGEIKVDYYMSR 273
Query: 191 QER-------DTEIN-----KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
ER EI K K N+Y+ L E T++ +++ +F + G I S V
Sbjct: 274 SERSRVWLQKSLEIKSNIQGKYKDFNMYINTLKEPTSDAEIRSAFADCGEIYSVRV 329
>gi|297733643|emb|CBI14890.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 71/77 (92%)
Query: 73 SNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
SN Q+AARAL++LNFTPLNGKP+R+MYSHRDPS+RKSG NIFIKNLDK IDHKALHDTF
Sbjct: 274 SNPQDAARALDVLNFTPLNGKPLRIMYSHRDPSIRKSGTENIFIKNLDKGIDHKALHDTF 333
Query: 133 SAFGNILSCKVATDLNG 149
SAFGNILSCK ATD +G
Sbjct: 334 SAFGNILSCKEATDASG 350
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 252 NSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311
N DAARA++ LN + K + + + + +++++ + N++IK
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMYSHR------------DPSIRKSGTE----NIFIK 318
Query: 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
NLD ID + L FS FG+I SCK D SG+
Sbjct: 319 NLDKGIDHKALHDTFSAFGNILSCKEATDASGM 351
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
N + A +A++ LN LN K + + + RD I KS N+++KNL + + L
Sbjct: 275 NPQDAARALDVLNFTPLNGKPLRIMY----SHRDPSIRKSGTENIFIKNLDKGIDHKALH 330
Query: 221 KSFGEYGTITSAVVMRDGDGKSKC 244
+F +G I S D G C
Sbjct: 331 DTFSAFGNILSCKEATDASGMQGC 354
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 27/175 (15%)
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--NKSKFTNV 205
NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNV
Sbjct: 89 NG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 147
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD---------- 255
Y+KN E +E L+ FG++G S VM D GKSK FGFV+FE +D
Sbjct: 148 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVMMEGGR 207
Query: 256 --------------AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 208 SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 262
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 108/180 (60%), Gaps = 34/180 (18%)
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD 301
SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL + A
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR--------AK 142
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF-------- 353
+F N+YIKN + +DDE+LK LF FG S KVM D SG S+G GFV+F
Sbjct: 143 EF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 200
Query: 354 ----------------STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
S+PEEA++A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 201 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 260
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 37/186 (19%)
Query: 58 DLSTRR--SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA--- 111
DL ++ S GYG+V+F + A RA+E +N LN + + V + R + GA
Sbjct: 83 DLPNKKNGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 142
Query: 112 --GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ--- 166
N++IKN + +D + L D F FG LS KV TD +G+SKG+GFV F+ E AQ
Sbjct: 143 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKVM 202
Query: 167 ---------------------KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNV 205
KA+ ++NG ++ K +YV RK+ER ++ TN
Sbjct: 203 MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQ 257
Query: 206 YVKNLS 211
Y++ ++
Sbjct: 258 YMQRMA 263
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 25/111 (22%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR------------ 62
GA A +F T++Y+ + ++ D +L DLF + G +SV+V D S +
Sbjct: 138 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERH 195
Query: 63 -----------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102
RS G+G+V FS+ +EA +A+ +N + KP+ V + R
Sbjct: 196 EDAQKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 246
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
GK+ KK+ER+ L+ E+ E K G+N+YIKN+ D +DD+ L++ F+ FG+ITS
Sbjct: 27 GKSSKKAERKQYLQLLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSV 86
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
K+MRD GIS+G GFV +STP+EA A+ M G M KPLYVA+AQRKEDR+ARL+ +F
Sbjct: 87 KIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRF 146
Query: 396 AQMRPVAMASTVAPRMPM-YP 415
A++ MA T +P +P YP
Sbjct: 147 AEL--ATMAGTASPVIPTGYP 165
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 67/108 (62%)
Query: 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246
L +++R+ I KS +NVY+KN+S+ ++ L++ F E+G ITS +MRD G SK FG
Sbjct: 41 LLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFG 100
Query: 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
FV + D+A AV ++ G F K YV AQ+K +R+ L+ +F +
Sbjct: 101 FVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRFAE 148
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDN 161
R+ + KS N++IKN+ +D L + F+ FGNI S K+ D G SKG+GFV +
Sbjct: 47 RNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYST 106
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK 199
+ A+ A+ + G++ K +YV RK++R + +
Sbjct: 107 PDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQ 144
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+++Y+ ++ V D L + F + G + SV++ RD S G+G+V +S EA A+
Sbjct: 57 SNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRD-DKGISKGFGFVCYSTPDEAKCAVS 115
Query: 84 MLNFTPLNGKPIRVMYSHR 102
+ GKP+ V + R
Sbjct: 116 SMRGVMFYGKPLYVAIAQR 134
>gi|147863122|emb|CAN82975.1| hypothetical protein VITISV_026120 [Vitis vinifera]
Length = 213
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 72/83 (86%)
Query: 336 KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
+VMRDP+GISRGSGFVAFST +EASR L +MNGKMV SKPLYVALAQ KEDRR RLQAQF
Sbjct: 103 QVMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQF 162
Query: 396 AQMRPVAMASTVAPRMPMYPPGA 418
+QMRP AMA +V PRM MYPPG
Sbjct: 163 SQMRPTAMAPSVGPRMSMYPPGT 185
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
VMRD +G S+ GFV F + +A+R + +NGK K YV AQ K +R L+ QF
Sbjct: 104 VMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQFS 163
Query: 294 Q 294
Q
Sbjct: 164 Q 164
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
+V D NG S+G GFV F + A + + +NG ++ K +YV K++R T +
Sbjct: 103 QVMRDPNGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRL 158
>gi|298712686|emb|CBJ48711.1| polyadenylate-binding protein, putative [Ectocarpus siliculosus]
Length = 80
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 73/79 (92%)
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
MRD DGKSKCFGFVNFEN+DDAA+AVEALNGKK DDKEWYVGKAQKKSERE ELK +FEQ
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Query: 295 NMKEAADKFQGANLYIKNL 313
+MKE ADK+QGANLY+KN
Sbjct: 61 SMKETADKYQGANLYVKNF 79
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 12/77 (15%)
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------- 197
D++G+SK +GFV F+N + A KA+E LNG ++DK+ YVG +K ER+ E+
Sbjct: 3 DMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQSM 62
Query: 198 ----NKSKFTNVYVKNL 210
+K + N+YVKN
Sbjct: 63 KETADKYQGANLYVKNF 79
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
MRD G S+ GFV F ++A++A+ +NGK V K YV AQ+K +R L+ +F Q
Sbjct: 1 MRDMDGKSKCFGFVNFENADDAAKAVEALNGKKVDDKEWYVGKAQKKSERENELKLRFEQ 60
Query: 398 -MRPVA 402
M+ A
Sbjct: 61 SMKETA 66
>gi|363750089|ref|XP_003645262.1| hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888895|gb|AET38445.1| Hypothetical protein Ecym_2746 [Eremothecium cymbalariae
DBVPG#7215]
Length = 681
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 147/299 (49%), Gaps = 41/299 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++GDL+ VT+ L D FN+ VS ++C D +T++SLGYGY+NFSN ++A R +E
Sbjct: 120 VALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIE 179
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
N+ P+ G+ +R+M S R+ RK+ N+F NL + A+ + +D F +G ILS
Sbjct: 180 EFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKYGKILS 239
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HFLRKQERDTEINK 199
CK+ + K GFV F+ + SA++AI + NG + G HF R + E K
Sbjct: 240 CKL-----DRRKNIGFVYFEKDSSAKQAIAEYNGKQFYGNNILCGIHFDRNVRKSPEFEK 294
Query: 200 SKF-------------------------------TNVYVKNLSESTTEEDLQKSFGEYGT 228
K V++KNL ++ + L F + G
Sbjct: 295 RKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNSDSDLLLDYFSQIGP 354
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ S + + + + F+ F+ DA A+++LN + + + +AQK + +++
Sbjct: 355 VKS-IFTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQLLGRTIELSRAQKNFQSDID 412
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 34/313 (10%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKG 153
+++ S P+L +FI +LD+ + K L DTF+ F + +S K+ D N +S G
Sbjct: 103 VKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLG 162
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL--- 210
YG++ F NEE A++ IE+ N + + ++V + L R++ K+ TNV+ NL
Sbjct: 163 YGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSL----RNSFYRKNIGTNVFFSNLPLE 218
Query: 211 SESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD 270
+ + T +F +YG I S + R K GFV FE A +A+ NGK+F
Sbjct: 219 NLALTTRVFYDAFKKYGKILSCKLDR-----RKNIGFVYFEKDSSAKQAIAEYNGKQFYG 273
Query: 271 KEWYVGKAQKKSER---ELELKHQFEQNM---KE-----------AADKFQGAN---LYI 310
G ++ R E E + ++M KE + K +G + ++I
Sbjct: 274 NNILCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFI 333
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL + D + L FS G + S + S ++ F+ F +A A+ +N
Sbjct: 334 KNLPLNSDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQ 392
Query: 371 VVSKPLYVALAQR 383
++ + + ++ AQ+
Sbjct: 393 LLGRTIELSRAQK 405
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 110/298 (36%), Gaps = 70/298 (23%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
+T YD F + G+++S ++ R R+++G+ Y F A +A+ N G
Sbjct: 222 LTTRVFYDAFKKYGKILSCKLDR----RKNIGFVY--FEKDSSAKQAIAEYNGKQFYGNN 275
Query: 95 IRVMYSHRDPSLRKS-------------------------------------GAGNIFIK 117
I + H D ++RKS +FIK
Sbjct: 276 I-LCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIK 334
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NL D L D FS G + S ++++ + + F+ F AQ AI+ LN L
Sbjct: 335 NLPLNSDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDSLNHSQL 393
Query: 178 NDKQVYVGHFLRKQERD------------------------TEINKSKFTNVYVKNLSES 213
+ + + + + D ++ N S VY+ +LS
Sbjct: 394 LGRTIELSRAQKNFQSDIDAANAGTGNTGGSIKSADSEGSSSQHNSSYKLTVYLSSLSSI 453
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF-GFVNFENSDDAARAVEALNGKKFDD 270
+E+ LQ E T + +R D + F GFV + +DA R E LN K D
Sbjct: 454 CSEQFLQCFCAEERIKTKRISIRFYDEDTLTFSGFVQCQTRNDANRLFELLNDKLLGD 511
>gi|410730871|ref|XP_003980256.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
gi|401780433|emb|CCK73580.1| hypothetical protein NDAI_0G05970 [Naumovozyma dairenensis CBS 421]
Length = 611
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 183/387 (47%), Gaps = 60/387 (15%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
TT LY+G L +VT+ L++ F + S+++CRD T SLGYGY+NFSN+ EA + +
Sbjct: 100 TTPLYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEATKLI 159
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
+ N+T L G I++M S R+ RK+ N+F NL +K + + +DTF +G IL
Sbjct: 160 DDYNYTNLFGNEIKIMPSMRNTLYRKNIGTNVFFSNLPLENKQLTTRKFYDTFKKYGEIL 219
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER---DTE 196
SCK+ + K GFV F+N+++A +AI+ N + ++ G K+ R D +
Sbjct: 220 SCKLDS-----RKNIGFVYFENDKAALQAIKDYNNKVFFGNKIICGIHFDKEIRTFPDFD 274
Query: 197 INKS-------------------KFTN-----------VYVKNLSESTTEEDLQKSFGEY 226
KS KF V++KNL +T ++++ F +
Sbjct: 275 KRKSYLDSQLIIEDELEAGGEFLKFKQEPKCIVPHPNAVFIKNLPMTTNDDEILDFFSKI 334
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G + S + S + FV ++ S D A++ L+ F D+ V KA+ K
Sbjct: 335 GPVKSVFASQVLKYNS-LWAFVTYKKSSDTELAIQKLDQTYFKDRAISVTKAKSK----- 388
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGI 344
K F+ + K+ +Y+KNL I +E+ + I K+ DP I
Sbjct: 389 --KTNFKIHDKKT--------VYLKNL-SPICNERFIERICLQERIRVQKISVDPISPDI 437
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMV 371
+GFV T +A++ M+ +++
Sbjct: 438 LTNTGFVTCKTEVDANKLFNFMDKRLI 464
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
K K T +Y+ LS+ TEE L ++F +Y T+ S + RD +S +G++NF NS +A
Sbjct: 97 KPKTTPLYIGGLSKDVTEETLFEAFEDYKTLASIKICRDSVTNESLGYGYLNFSNSVEAT 156
Query: 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---D 314
+ ++ N E + + + + + +N+ G N++ NL +
Sbjct: 157 KLIDDYNYTNLFGNEIKIMPSMRNT--------LYRKNI--------GTNVFFSNLPLEN 200
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+ K F +G I SCK+ + GFV F + A +A+ + N K+
Sbjct: 201 KQLTTRKFYDTFKKYGEILSCKL-----DSRKNIGFVYFENDKAALQAIKDYNNKVFFGN 255
Query: 375 PLYVALAQRKEDR 387
+ + KE R
Sbjct: 256 KIICGIHFDKEIR 268
>gi|302308066|ref|NP_984845.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|299789279|gb|AAS52669.2| AEL016Cp [Ashbya gossypii ATCC 10895]
gi|374108067|gb|AEY96974.1| FAEL016Cp [Ashbya gossypii FDAG1]
Length = 678
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 145/299 (48%), Gaps = 41/299 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++GDL+ VT+ L D FN+ VS ++C D +T++SLGYGY+NFSN ++A R +E
Sbjct: 116 VALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLGYGYLNFSNEEDAERVIE 175
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
N+ P+ G+ +R+M S R+ RK+ N+F NL + A+ + +D F FG ILS
Sbjct: 176 EFNYIPIFGREVRIMPSLRNSFYRKNIGTNVFFSNLPLENLALTTRVFYDAFKKFGKILS 235
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HFLRKQERDTEINK 199
CK+ + K GFV F+ + +A++AI + NG + G HF R + E K
Sbjct: 236 CKL-----DRRKNIGFVYFEKDSAAKQAIAEYNGKEFFGNNILCGIHFDRNVRKSPEFEK 290
Query: 200 SKF-------------------------------TNVYVKNLSESTTEEDLQKSFGEYGT 228
K V++KNL + + L F + G
Sbjct: 291 RKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIKNLPLNPDSDLLLDYFSQIGP 350
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
+ S + + + + F+ F+ DA A++ LN + + + +AQK + +++
Sbjct: 351 VKS-IFTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQLLGRTIELSRAQKNFQTDID 408
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 146/313 (46%), Gaps = 34/313 (10%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKG 153
+++ S P+L +FI +LD+ + K L DTF+ F + +S K+ D N +S G
Sbjct: 99 VKLGRSKDSPTLTSKKLVALFIGDLDEKVTEKNLRDTFNKFDSFVSAKICIDSNTKKSLG 158
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL--- 210
YG++ F NEE A++ IE+ N + + ++V + L R++ K+ TNV+ NL
Sbjct: 159 YGYLNFSNEEDAERVIEEFNYIPIFGREVRIMPSL----RNSFYRKNIGTNVFFSNLPLE 214
Query: 211 SESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD 270
+ + T +F ++G I S + R K GFV FE A +A+ NGK+F
Sbjct: 215 NLALTTRVFYDAFKKFGKILSCKLDR-----RKNIGFVYFEKDSAAKQAIAEYNGKEFFG 269
Query: 271 KEWYVGKAQKKSER---ELELKHQFEQNM---KE-----------AADKFQGAN---LYI 310
G ++ R E E + ++M KE + K +G + ++I
Sbjct: 270 NNILCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFI 329
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL + D + L FS G + S + S ++ F+ F +A A+ +N
Sbjct: 330 KNLPLNPDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQ 388
Query: 371 VVSKPLYVALAQR 383
++ + + ++ AQ+
Sbjct: 389 LLGRTIELSRAQK 401
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 110/298 (36%), Gaps = 70/298 (23%)
Query: 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94
+T YD F + G+++S ++ R R+++G+ Y F A +A+ N G
Sbjct: 218 LTTRVFYDAFKKFGKILSCKLDR----RKNIGFVY--FEKDSAAKQAIAEYNGKEFFGNN 271
Query: 95 IRVMYSHRDPSLRKSG-------------------------------------AGNIFIK 117
I + H D ++RKS +FIK
Sbjct: 272 I-LCGIHFDRNVRKSPEFEKRKARLEDMTLVKESLVMDNNQEIPSGSKMKGPHPNAVFIK 330
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
NL D L D FS G + S ++++ + + F+ F AQ AI+ LN L
Sbjct: 331 NLPLNPDSDLLLDYFSQIGPVKSI-FTSNVSKLNSAWAFITFKKGSDAQDAIDNLNHSQL 389
Query: 178 NDKQVYVGHFLRKQERD------------------------TEINKSKFTNVYVKNLSES 213
+ + + + + D T+ + S VY+ +LS
Sbjct: 390 LGRTIELSRAQKNFQTDIDAANAGAGNNSSTTRSNDSDPCSTQHSSSYKLTVYLSSLSSI 449
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF-GFVNFENSDDAARAVEALNGKKFDD 270
+E+ LQ E T + +R D + F GFV + +DA R E LN K D
Sbjct: 450 CSEQFLQCFCAEERIKTKRISIRFYDEATLTFSGFVQCQTRNDANRLFELLNNKLLGD 507
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
++QG NLYIKNLDD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++
Sbjct: 1 RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATK 59
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
A+ EMNG++V SKPLYVALAQRKE+R+A L Q+ Q
Sbjct: 60 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 95
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+SK FGFV F + ++A +AV
Sbjct: 5 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTE 63
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
+NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 64 MNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 97
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 64
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER K+ TN Y++ ++
Sbjct: 65 NGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 98
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LY+ +L+ + D +L F+ G + S +V L RS G+G+V FS+ +EA +A+
Sbjct: 5 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVT 62
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD--KAIDHKALHDTF 132
+N + KP+ V + R RK+ N +++ + +A+ A+ + F
Sbjct: 63 EMNGRIVGSKPLYVALAQRK-EERKAHLTNQYMQRVAGMRALPANAILNQF 112
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 198/433 (45%), Gaps = 55/433 (12%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
+ + +SLYV +L ++T +L F G+++ +V RD +T + GYG+V +SN+ E
Sbjct: 302 SEEIDMSSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHE 361
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA--------------GNIFIKNLDKAI 123
AA A+ LN + GK + V S P+L S N+++ N+ +I
Sbjct: 362 AANAIIHLNGHLVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSI 421
Query: 124 DHKALHDTFSAFGNILSCKVATDLNGQS-KG-YGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
D K L + F FG I +VA S KG YGFV+F + + A +AI ++G L+ +
Sbjct: 422 DTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALVEGET 481
Query: 182 VYVG-------------HFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
+ V H L EINKS+ +Y+ NL ST + + K F +G
Sbjct: 482 LVVRVAGLSSSASSPAVHGLPIPS--PEINKSR---IYITNLPRSTNADMMVKLFVPFGQ 536
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
I+ V+ + + V + + A +A++ ++G K V ++ S
Sbjct: 537 ISKVVMNLE-------YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSD--SCPTDAA 587
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
H Q++ + + AN+++ + +++ ++L +LF PFG I +V + +G
Sbjct: 588 GHTSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH-----QGY 642
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALA--QRKEDRRA-----RLQAQFAQMRPV 401
G F+ P A+ A+ MNG + L V +A D A +LQ + R +
Sbjct: 643 GMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQI 702
Query: 402 AMASTVAPRMPMY 414
MA+ +P+Y
Sbjct: 703 DMANLYVCHLPLY 715
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 151/289 (52%), Gaps = 26/289 (8%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+++ NL ++ L + F FG I+ KVA + G SKGYGFV++D+ SA AI +
Sbjct: 205 NLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINR 264
Query: 172 LNGMLLNDKQVYV--------GHFLRKQERDTEINKSK----FTNVYVKNLSESTTEEDL 219
+NG L++ K + V G Q ++ +++YV+NLS S T+E+L
Sbjct: 265 MNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEEL 324
Query: 220 QKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV--- 275
+ F +G I A V RD G +K +GFV + NS +AA A+ LNG + K+ V
Sbjct: 325 LQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVRVS 384
Query: 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC 335
G + S +E H + +KE ANLY+ N+ SID +KL ++F PFG IT
Sbjct: 385 GVSPALSNSAVE-SHTDARLIKE----IDMANLYVCNIPTSIDTKKLIEIFLPFGKITHA 439
Query: 336 KVMRDP---SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+V SG R GFV F+ + A+ A+ M+G +V + L V +A
Sbjct: 440 RVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRVA 487
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 191/435 (43%), Gaps = 53/435 (12%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + T+LYVG+L A+V +L +LF G++V +V + T S GYG+V + +
Sbjct: 195 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDD 254
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-----SHRDPSLRKSG-----------AGNIFIKN 118
A A+ +N ++GK + V S +PS++ +++++N
Sbjct: 255 PHSATAAINRMNGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRN 314
Query: 119 LDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177
L ++ + L F FG I+ KV D G +KGYGFV++ N A AI LNG L+
Sbjct: 315 LSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLV 374
Query: 178 NDKQVYV----------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
K++ V + I + N+YV N+ S + L + F +G
Sbjct: 375 EGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLYVCNIPTSIDTKKLIEIFLPFG 434
Query: 228 TITSA-VVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
IT A V G GK + +GFV F +S AA A+ ++G + + V A S
Sbjct: 435 KITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITLMDGALVEGETLVVRVAGLSSSA 493
Query: 285 ELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI 344
H + + + + +YI NL S + + + +LF PFG I+ + + S
Sbjct: 494 SSPAVH----GLPIPSPEINKSRIYITNLPRSTNADMMVKLFVPFGQISKVVMNLEYS-- 547
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR-------RARLQAQFAQ 397
V ++ A +A+ M+G M+ K L V R+ D Q+ +
Sbjct: 548 -----LVYYADVASAVKAIKHMDGYMIGGKRLVV----RRSDSCPTDAAGHTSTQSLGKE 598
Query: 398 MRPVAMASTVAPRMP 412
++ + MA+ R+P
Sbjct: 599 VKEIDMANVFVGRIP 613
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 111/436 (25%), Positives = 183/436 (41%), Gaps = 63/436 (14%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNFSNAQEAARALEM 84
LYV ++ ++ +L ++F G++ RV T G YG+V F+++Q AA A+ +
Sbjct: 412 LYVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITL 471
Query: 85 LNFTPLNGKPIRVMYSH---------------RDPSLRKSGAGNIFIKNLDKAIDHKALH 129
++ + G+ + V + P + KS I+I NL ++ + +
Sbjct: 472 MDGALVEGETLVVRVAGLSSSASSPAVHGLPIPSPEINKS---RIYITNLPRSTNADMMV 528
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV----- 184
F FG I KV +L Y V + + SA KAI+ ++G ++ K++ V
Sbjct: 529 KLFVPFGQI--SKVVMNLE-----YSLVYYADVASAVKAIKHMDGYMIGGKRLVVRRSDS 581
Query: 185 ------GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG 238
GH Q E+ + NV+V + + + L + F +G I V
Sbjct: 582 CPTDAAGH-TSTQSLGKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVF--- 637
Query: 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL-----ELKHQFE 293
+ + +G F + AA A++ +NG + V A + + +LK Q
Sbjct: 638 --QHQGYGMFRFNDPFSAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMP 695
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVA 352
N D ANLY+ +L I EKL ++F P G IT +V+ D +GIS+G GFV
Sbjct: 696 GNEGRQIDM---ANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVR 752
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKE----DRRARLQAQFAQMRPVAMASTVA 408
F+ A+ AL MNG + L V +A +L +QF P M +
Sbjct: 753 FADTYSAAVALTHMNGYPLEGHILEVRIAGVHPSDMGSYMTQLYSQFTYPDPSTMVVGI- 811
Query: 409 PRMPMYPPGAWIWLSA 424
P W + A
Sbjct: 812 ------PTSYWPYYGA 821
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 31/193 (16%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G + +++VG + + V QL +LF GQ+V VRV + GYG F++
Sbjct: 596 GKEVKEIDMANVFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH------QGYGMFRFND 649
Query: 75 AQEAARALEMLNFTPLNGKPIRVMY-----------SHRDPSLRKSG-------AGNIFI 116
AA A++ +N + G + V + D L+ G N+++
Sbjct: 650 PFSAAAAIDHMNGYQIGGSALVVRVAGLPNPGDFSAATDDLKLQMPGNEGRQIDMANLYV 709
Query: 117 KNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175
+L I + L + F G I +V TD G SKG+GFV+F + SA A+ +NG
Sbjct: 710 CHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGY 769
Query: 176 LLNDKQVYVGHFL 188
L GH L
Sbjct: 770 PLE------GHIL 776
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
G Q +LYV L +T +L ++F GQ+ RV D T S G+G+V F++
Sbjct: 696 GNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFAD 755
Query: 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPS 105
AA AL +N PL G + V + PS
Sbjct: 756 TYSAAVALTHMNGYPLEGHILEVRIAGVHPS 786
>gi|384248056|gb|EIE21541.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 537
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 36/241 (14%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
+V+V LS + E L++ FG G + SAVVMRD G S+ FGFVNF +D+A RA++
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADK-FQGANLYIKNLDDSIDDEKL 322
N W V KA+K+ EQ + +++ NL+I+ ++ I +L
Sbjct: 85 NKIPHCAGTWLVRKAEKRKP---------EQKAGQVSEQGLDLCNLFIRGVEPEISSIRL 135
Query: 323 KQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+ +F FG + S K++ DP +G S+ +GF+ F+ PEEA+RA+ EMNGK V SK L+V LA
Sbjct: 136 QSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSKRLFVTLA 195
Query: 382 QRK--EDRRARLQAQFAQ-----MRPVAMA-----STVAPRMP-------------MYPP 416
Q++ D + + F Q P MA S +AP+ P MYPP
Sbjct: 196 QKRATTDPQGIIHPPFEQSAAQPSTPTGMAYFMPMSGMAPQYPQGAHGHPAFQPYGMYPP 255
Query: 417 G 417
G
Sbjct: 256 G 256
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Query: 9 QNVNGGGANANQ-----FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
Q NGGG A + + S++V L V+ L ++F ++G+V S V RD
Sbjct: 4 QGTNGGGPGAQEAVNPATESCSVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRD-HFGA 62
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGA--------GNIF 115
S G+G+VNF+ A EA RA++ N P V + + +K+G N+F
Sbjct: 63 SRGFGFVNFTKADEADRAIQQFNKIPHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCNLF 122
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNG 174
I+ ++ I L F AFG ++S K+ D G SK GF++F E A +AI ++NG
Sbjct: 123 IRGVEPEISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNG 182
Query: 175 MLLNDKQVYV 184
+ K+++V
Sbjct: 183 KQVGSKRLFV 192
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
++F+ L + + L + F G + S V D G S+G+GFV F + A +AI++
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKS--------KFTNVYVKNLSESTTEEDLQKSFG 224
N + +RK E+ K+ N++++ + + LQ F
Sbjct: 85 NKI----PHCAGTWLVRKAEKRKPEQKAGQVSEQGLDLCNLFIRGVEPEISSIRLQSMFE 140
Query: 225 EYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283
+G + S+ ++ D G SKC GF+ F ++AARA+ +NGK+ K +V AQK++
Sbjct: 141 AFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSKRLFVTLAQKRAT 200
Query: 284 RELE--LKHQFEQN 295
+ + + FEQ+
Sbjct: 201 TDPQGIIHPPFEQS 214
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
GNI+++ L I + L F FG I S K+ D G+SKGYGF+ + + SA AI
Sbjct: 128 PGNIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAIS 187
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
KLNG+L+N ++Y+ H + K+ER I+ KS FTN+Y+KNL T + + F ++G
Sbjct: 188 KLNGLLVNGSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQFESLFAKFGE 247
Query: 229 ITSAVV--MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY-VGKAQKKSER 284
I+S+ + + DGD SK FGF+NF+N + A A+E+LN + ++ V +AQ++ ER
Sbjct: 248 ISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRRDER 306
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 13/192 (6%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
N+YV+ L T EDL K F +G ITS+ ++ D G+SK +GF+N+ + A A+ L
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKL 189
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
NG + + Y+ K ER + FE K NLYIKNL ++ +
Sbjct: 190 NGLLVNGSKLYLNHHIAKKERIQRI--DFE--------KSNFTNLYIKNLPIDYTIDQFE 239
Query: 324 QLFSPFGSITSCKV--MRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVSKPLYVAL 380
LF+ FG I+S + + D S+ GF+ F E A A+ +N ++ ++ L V+
Sbjct: 240 SLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSR 299
Query: 381 AQRKEDRRARLQ 392
AQR+++R +
Sbjct: 300 AQRRDERNEQFH 311
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 55/85 (64%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
Q +NLY++NL SIDD L F+PFG I S K+M G SRG GFV F T EASRAL
Sbjct: 423 QPSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRAL 482
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRR 388
+ M+G ++ + L+V+ AQ+ +R
Sbjct: 483 IAMHGNVLHGQMLHVSFAQKNNKKR 507
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YV L +T L+ +F G++ S ++ D RS GYG++N+S+ A A+
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVND-EFGRSKGYGFINYSDGSSADDAISK 188
Query: 85 LNFTPLNGKPIRVMYSH--------RDPSLRKSGAGNIFIKNL--DKAIDHKALHDTFSA 134
LN +NG ++ +H + KS N++IKNL D ID F+
Sbjct: 189 LNGLLVNGS--KLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYTIDQ--FESLFAK 244
Query: 135 FGNILSCKVATDLNG---QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ-VYVGHFLRK 190
FG I S DLN SK +GF+ F N ESA AIE LN ++ Q + V R+
Sbjct: 245 FGEI-SSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNNFEISPNQFLSVSRAQRR 303
Query: 191 QERDTEIN 198
ER+ + +
Sbjct: 304 DERNEQFH 311
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
+N+YV+NL+ S + L SF +G I SA +M +G+S+ +GFV F S +A+RA+ A
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIA 484
Query: 263 LNGKKFDDKEWYVGKAQKKSER 284
++G + +V AQK +++
Sbjct: 485 MHGNVLHGQMLHVSFAQKNNKK 506
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170
N++++NL +ID LH +F+ FG I+S K+ T G+S+GYGFV F A +A+
Sbjct: 424 PSNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALI 483
Query: 171 KLNGMLLNDKQVYV 184
++G +L+ + ++V
Sbjct: 484 AMHGNVLHGQMLHV 497
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
++LYV +L ++ DS L+ F G +VS ++ S GYG+V F + EA+RAL
Sbjct: 425 SNLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMT-TDEGESRGYGFVCFRTSPEASRALI 483
Query: 84 MLNFTPLNGKPIRVMYSHRD 103
++ L+G+ + V ++ ++
Sbjct: 484 AMHGNVLHGQMLHVSFAQKN 503
>gi|123975938|ref|XP_001314386.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896695|gb|EAY01839.1| hypothetical protein TVAG_002940 [Trichomonas vaginalis G3]
Length = 307
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 146/269 (54%), Gaps = 19/269 (7%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+++V +L + T + LF++ G V++V L + + Y +V F++ +EA +A+
Sbjct: 17 AIHVSNLPISATVEFIRTLFSECGTVINVF----LKNKPTGSYCFVEFADKEEAEKAVRD 72
Query: 85 LNFTPLNGKPIRVMYSHRDPSLR-KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N+T LNG+ I + ++ R SG GN+F++ +D++I+ LH+ FS FG ++SCK+
Sbjct: 73 FNYTKLNGESIVITLTNHGIMQRIVSGEGNLFVRGIDESIEAPQLHELFSHFGEVISCKI 132
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL----RKQERDTEIN- 198
LNG+ +GY +VQF N +A+++L +N K + + F+ R+ + TE N
Sbjct: 133 PV-LNGKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKFINRGMRQPNKATEQNI 191
Query: 199 --KSKFTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
FTN+++KNL ES T DL + F EYG + SA ++ + K GF + +
Sbjct: 192 ATDPTFTNIFIKNLPESINTLLDLLRLFQEYGQVVSARIVPE-----KRSGFAKMIDHES 246
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSER 284
A RAV LNG+ ++ SER
Sbjct: 247 AVRAVLGLNGRVIYGHTISCCRSLSLSER 275
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 25/274 (9%)
Query: 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDN 161
R P LR+ I + NL + + + FS G +++ + N + Y FV+F +
Sbjct: 7 RTP-LRQPKDNAIHVSNLPISATVEFIRTLFSECGTVINVFLK---NKPTGSYCFVEFAD 62
Query: 162 EESAQKAIEKLNGMLLNDKQVYV---GHFLRKQERDTEINKSKFTNVYVKNLSESTTEED 218
+E A+KA+ N LN + + + H + ++ E N++V+ + ES
Sbjct: 63 KEEAEKAVRDFNYTKLNGESIVITLTNHGIMQRIVSGE------GNLFVRGIDESIEAPQ 116
Query: 219 LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278
L + F +G + S + +GK + + +V F N D RA++ L + K + K
Sbjct: 117 LHELFSHFGEVISCKI-PVLNGKPRGYAYVQFANPADGDRAMKELADSTINGKAITIEKF 175
Query: 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD-EKLKQLFSPFGSITSCKV 337
+ R + EQN+ A D N++IKNL +SI+ L +LF +G + S ++
Sbjct: 176 INRGMR--QPNKATEQNI--ATDP-TFTNIFIKNLPESINTLLDLLRLFQEYGQVVSARI 230
Query: 338 MRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371
+ + + SGF E A RA+L +NG+++
Sbjct: 231 VPE-----KRSGFAKMIDHESAVRAVLGLNGRVI 259
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 29/196 (14%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G +L+V ++ ++ QL++LF+ G+V+S ++ + + GY YV F+N + RA
Sbjct: 99 GEGNLFVRGIDESIEAPQLHELFSHFGEVISCKI--PVLNGKPRGYAYVQFANPADGDRA 156
Query: 82 LEMLNFTPLNGKPIRV-MYSHR---------------DPSLRKSGAGNIFIKNLDKAIDH 125
++ L + +NGK I + + +R DP+ NIFIKNL ++I+
Sbjct: 157 MKELADSTINGKAITIEKFINRGMRQPNKATEQNIATDPTF-----TNIFIKNLPESINT 211
Query: 126 KA-LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L F +G ++S ++ + K GF + + ESA +A+ LNG ++ +
Sbjct: 212 LLDLLRLFQEYGQVVSARIVPE-----KRSGFAKMIDHESAVRAVLGLNGRVIYGHTISC 266
Query: 185 GHFLRKQERDTEINKS 200
L ER +N++
Sbjct: 267 CRSLSLSERAAFMNRN 282
>gi|351699217|gb|EHB02136.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 205
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 85/120 (70%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A + SL VGDL ++ ++ LY+ F++ G V+ +RVC D+ TRRSLG+ YV+F
Sbjct: 3 AAVRSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
EA RAL+ +NF + GK I +M+ +DPSL KSG GN+FIKNLDK+ID+KAL+DTFSA
Sbjct: 63 AEAERALDTMNFDGIKGKQIYIMWPQKDPSLTKSGVGNVFIKNLDKSIDNKALYDTFSAL 122
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 105 SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 163
++R ++ + +L L++ FS G +L +V D + +S G+ +V F
Sbjct: 4 AVRSYPVASLSVGDLHSDAAEAVLYEKFSRAGPVLPIRVCGDVITRRSLGHAYVSFQQPA 63
Query: 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
A++A++ +N + KQ+Y+ ++D + KS NV++KNL +S + L +F
Sbjct: 64 EAERALDTMNFDGIKGKQIYI----MWPQKDPSLTKSGVGNVFIKNLDKSIDNKALYDTF 119
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
ELK Q+E E K+QG NL++KNLDDS+DDEKL++ FSPFG+I S KVMR G S+
Sbjct: 2 ELKKQYEAARLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSK 61
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV FSTPEEA+RA+ E N ++V KPLYVA+AQRKE RRA+L AQ Q R
Sbjct: 62 NFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQL-AQQVQAR 113
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%)
Query: 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 252
R ++ K + N++VKNL +S +E LQ+ F +GTI SA VMR DGKSK FGFV F
Sbjct: 11 RLEKMTKYQGVNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFST 70
Query: 253 SDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
++A RA+ N + K YV AQ+K R +L Q +
Sbjct: 71 PEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQ 111
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+F+KNLD ++D + L + FS FG I+S KV +G+SK +GFV F E A +AI +
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEI 197
N ++ K +YV RK+ R ++
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVRRAQL 106
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L+V +L+ +V D +L + F+ G ++S +V R +S +G+V FS +EA RA+
Sbjct: 21 VNLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRT-EDGKSKNFGFVCFSTPEEATRAIT 79
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N + GKP+ V + R R A + +N
Sbjct: 80 EKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQARN 114
>gi|254584953|ref|XP_002498044.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
gi|238940938|emb|CAR29111.1| ZYRO0G00814p [Zygosaccharomyces rouxii]
Length = 654
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 144/294 (48%), Gaps = 43/294 (14%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T +L++GDL+ + + L +F + + SV+VC D T +SLGYGY+NFS Q+ A
Sbjct: 102 TIALFIGDLDEQIDEEILIQIFKKFKSLTSVKVCTDAETGKSLGYGYLNFSRRQDTLAAT 161
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
E N+ P+ GK +R+M S R+ RK+ NIF NL + + + +DTF +GNIL
Sbjct: 162 EEFNYRPIFGKEVRIMPSLRNTFYRKNIGTNIFFSNLPLENSNLTTRVFYDTFKVYGNIL 221
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF---LRK----Q 191
SCK+ + K GF+ FDN+ +A+ I++ NG ++ G HF LRK +
Sbjct: 222 SCKL-----DKRKNIGFIYFDNDHAARVVIKEFNGSEFFGNKILCGIHFDKELRKFPEFE 276
Query: 192 ER-----DTEINKSKFT---------------------NVYVKNLSESTTEEDLQKSFGE 225
+R D I K + T ++VKNL S ++++ F
Sbjct: 277 KRKSSLNDITIPKEQLTLGPTDAKTVEHDSTQHLPHPNAIFVKNLPPSCPDDEILDYFSN 336
Query: 226 YGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279
G + S V + FV ++ D +AV+ +G +F ++ V KA+
Sbjct: 337 LGPVKS-VFSSTSHKYESSWAFVTYKKGSDTNKAVKIYHGAQFKGRKLSVIKAE 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 25/188 (13%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEAL 263
+++ +L E EE L + F ++ ++TS V D + GKS +G++NF D A E
Sbjct: 105 LFIGDLDEQIDEEILIQIFKKFKSLTSVKVCTDAETGKSLGYGYLNFSRRQDTLAATEEF 164
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL---DDSIDDE 320
N + KE + + L++ F + K G N++ NL + ++
Sbjct: 165 NYRPIFGKEVRIMPS---------LRNTFYR-------KNIGTNIFFSNLPLENSNLTTR 208
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
F +G+I SCK+ + + GF+ F A + E NG + +
Sbjct: 209 VFYDTFKVYGNILSCKLDK-----RKNIGFIYFDNDHAARVVIKEFNGSEFFGNKILCGI 263
Query: 381 AQRKEDRR 388
KE R+
Sbjct: 264 HFDKELRK 271
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
Query: 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361
++QG NLY+KNLDD IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++
Sbjct: 7 RYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATK 65
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397
A+ EMNG++V +KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 66 AVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 101
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVN 249
KQ+R I + + N+YVKNL + +E L+K F +GTITSA VM +G G+SK FGFV
Sbjct: 1 KQDR---ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVC 56
Query: 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q M
Sbjct: 57 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 103
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 70
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLS 211
NG ++ K +YV RK+ER ++ TN Y++ ++
Sbjct: 71 NGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 104
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+ +
Sbjct: 13 LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEM 70
Query: 86 NFTPLNGKPIRVMYSHR 102
N + KP+ V + R
Sbjct: 71 NGRIVATKPLYVALAQR 87
>gi|123449065|ref|XP_001313255.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895132|gb|EAY00326.1| hypothetical protein TVAG_307720 [Trichomonas vaginalis G3]
Length = 274
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 21/269 (7%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG-YGYVNFSNAQEAARALEM 84
++V +L N TD L F G V++V S R+ G + ++ F N + A RA+
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVS-----SKHRANGNFAFIQFDNKESAIRAVAN 63
Query: 85 LNFTPLNGKPIRVMYSHRD-PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
N+T LNG+PI + Y+ + + SG GNI IK LD+ I+ LH+ FS FG ++SCKV
Sbjct: 64 YNYTKLNGEPIIITYASIEYMRIIHSGLGNICIKGLDENIEASQLHELFSNFGEVISCKV 123
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE--INKSK 201
G+++G+ ++QF N A +A ++L +N K + + +++K + +N+
Sbjct: 124 PMQY-GKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKKDNPNKPQYVNRKS 182
Query: 202 -----FTNVYVKNLSEST-TEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
FTN++++NL +S + DL F ++G + SA ++ D K GF N + D
Sbjct: 183 GMNDVFTNIFIRNLPDSVRSLADLVTLFVDFGPVISARIILD-----KKAGFCNMADHDS 237
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSER 284
A RA+ LNGK +A K ER
Sbjct: 238 AVRALNGLNGKILYGNTLITCRALTKEER 266
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 18/277 (6%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
I + NL L F GN+L+ NG + F+QFDN+ESA +A+ N
Sbjct: 9 IHVSNLPPNATDDFLRSFFQDCGNVLNVSSKHRANGN---FAFIQFDNKESAIRAVANYN 65
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233
LN + + + + + R I S N+ +K L E+ L + F +G + S
Sbjct: 66 YTKLNGEPIIITYASIEYMR---IIHSGLGNICIKGLDENIEASQLHELFSNFGEVISCK 122
Query: 234 VMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
V GK++ F ++ F+N DA RA + L + K + KK K Q+
Sbjct: 123 VPMQY-GKNRGFAYIQFKNPMDADRARQELADATINGKPISIEAYVKKDNPN---KPQYV 178
Query: 294 QNMKEAADKFQGANLYIKNLDDSIDD-EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352
D F N++I+NL DS+ L LF FG + S +++ D + +GF
Sbjct: 179 NRKSGMNDVF--TNIFIRNLPDSVRSLADLVTLFVDFGPVISARIILD-----KKAGFCN 231
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
+ + A RAL +NGK++ L A KE+R A
Sbjct: 232 MADHDSAVRALNGLNGKILYGNTLITCRALTKEERLA 268
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++ + L+ N+ SQL++LF+ G+V+S +V R G+ Y+ F N +A RA
Sbjct: 90 GLGNICIKGLDENIEASQLHELFSNFGEVISCKVPMQYGKNR--GFAYIQFKNPMDADRA 147
Query: 82 LEMLNFTPLNGKPIRV-MYSHRD----PSL--RKSGAG----NIFIKNLDKAIDHKA-LH 129
+ L +NGKPI + Y +D P RKSG NIFI+NL ++ A L
Sbjct: 148 RQELADATINGKPISIEAYVKKDNPNKPQYVNRKSGMNDVFTNIFIRNLPDSVRSLADLV 207
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
F FG ++S ++ D K GF + +SA +A+ LNG +L + L
Sbjct: 208 TLFVDFGPVISARIILD-----KKAGFCNMADHDSAVRALNGLNGKILYGNTLITCRALT 262
Query: 190 KQER 193
K+ER
Sbjct: 263 KEER 266
>gi|366988141|ref|XP_003673837.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
gi|342299700|emb|CCC67456.1| hypothetical protein NCAS_0A08980 [Naumovozyma castellii CBS 4309]
Length = 605
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/436 (25%), Positives = 192/436 (44%), Gaps = 65/436 (14%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
TSL++ L +VT++ LYD+F++ +VS+++C D +++SL YGY+NFS+ EA +A+
Sbjct: 91 VTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELEAKKAV 150
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNIL 139
+ N+T L G I++M S R+ RK+ N+F NL +K + +A +DTF +G IL
Sbjct: 151 DDFNYTILFGNEIKMMPSLRNTIYRKNIGTNVFFANLPLENKHLTTRAFYDTFKGYGEIL 210
Query: 140 SCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER------ 193
SCK+ + K GFV FDN++ AQ I N + ++ G K+ R
Sbjct: 211 SCKL-----DKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHFDKEIRNFPNFD 265
Query: 194 ------------DTEINKSKF---------------TNVYVKNLSESTTEEDLQKSFGEY 226
D E+ + ++VKNL +E++ F +
Sbjct: 266 KRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVPDEEILDHFSKL 325
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G + S KS + F+ ++ D RA N KF K V +A+ K+
Sbjct: 326 GPVKSVFSSNVTKYKSS-WAFITYKKQTDTIRATNHFNNTKFQGKTITVSRAKLKNTE-- 382
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
+Y+ N+ + E L++L G I + K+ P
Sbjct: 383 -----------------GNRTVYLNNVSVVCNQEFLRRLCLQEG-IKAQKIYLKPDDHDS 424
Query: 347 --GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMA 404
SG++ ++ + A R +NGK + ++V+ + K+ + Q+ Q + +
Sbjct: 425 YSCSGYIKCNSKDNAKRVFEILNGKFIGGCYIHVSWDKIKDPLKDE-QSDITQNKHNILP 483
Query: 405 STVAPRMPMYPPGAWI 420
+ P + G +I
Sbjct: 484 NLFLPNPAIQKHGNFI 499
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 35/303 (11%)
Query: 107 RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG-QSKGYGFVQFDNEESA 165
RK ++FI L + L+D FS + +++S K+ D + +S YG++ F +E A
Sbjct: 87 RKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYLNFSDELEA 146
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNL---SESTTEEDLQKS 222
+KA++ N +L ++ + L R+T K+ TNV+ NL ++ T +
Sbjct: 147 KKAVDDFNYTILFGNEIKMMPSL----RNTIYRKNIGTNVFFANLPLENKHLTTRAFYDT 202
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F YG I S + K K GFV F+N A + N K + + G K
Sbjct: 203 FKGYGEILSCKL-----DKRKNIGFVYFDNDKPAQMVINDFNNKIYFGNKIICGLHFDKE 257
Query: 283 ERELELKHQFEQNMKEAA---DKFQGAN------------------LYIKNLDDSIDDEK 321
R + + N+ D+ + AN +++KNL + DE+
Sbjct: 258 IRNFPNFDKRKANIDNKIIIDDELEAANIGVQFKKNSELILPHPNAIFVKNLPFDVPDEE 317
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
+ FS G + S + + F+ + + RA N K + V+ A
Sbjct: 318 ILDHFSKLGPVKSV-FSSNVTKYKSSWAFITYKKQTDTIRATNHFNNTKFQGKTITVSRA 376
Query: 382 QRK 384
+ K
Sbjct: 377 KLK 379
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGFV 248
+ R+ K T++++ L++ TE L F +Y ++ S + D D K S +G++
Sbjct: 79 RDSRNYRSRKRIVTSLFINGLADDVTENMLYDVFSKYQSLVSLKICCDSDSKKSLNYGYL 138
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANL 308
NF + +A +AV+ N E + + + + + +N+ G N+
Sbjct: 139 NFSDELEAKKAVDDFNYTILFGNEIKMMPSLRNT--------IYRKNI--------GTNV 182
Query: 309 YIKNL---DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365
+ NL + + F +G I SCK+ + + GFV F + A + +
Sbjct: 183 FFANLPLENKHLTTRAFYDTFKGYGEILSCKLDK-----RKNIGFVYFDNDKPAQMVIND 237
Query: 366 MNGKMVVSKPLYVALAQRKEDR 387
N K+ + L KE R
Sbjct: 238 FNNKIYFGNKIICGLHFDKEIR 259
>gi|50302861|ref|XP_451368.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640499|emb|CAH02956.1| KLLA0A08338p [Kluyveromyces lactis]
Length = 766
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 182/391 (46%), Gaps = 52/391 (13%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L++GDL NVT+ L+++FN+ SV++C D +T++SLGYGY+NF + ++A A++
Sbjct: 138 TALFIGDLPGNVTEDMLHNIFNKFKSFNSVKICVDSNTKKSLGYGYLNFGDPKDAENAVD 197
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILS 140
N+ P+ G+ IR+M S R+ RK+ N+F NL + + + +D F FG ILS
Sbjct: 198 EYNYMPIFGREIRMMPSLRNTYFRKNIGTNVFFSNLPLDNTKLTTRVFYDEFKKFGKILS 257
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HFLRKQERDTEINK 199
CK+ + K GF+ F+N+ +A++AI++ NG D + G HF R
Sbjct: 258 CKL-----DRRKNIGFIYFENDAAAKEAIKQYNGKEFFDSTIMCGVHFDR---------- 302
Query: 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259
N+ +S E + + M D + V + S++ +
Sbjct: 303 ---------NVRKSPEFEQKINRINNLTVVKEKLEMEDDNN-------VTTDPSENGKKD 346
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAAD-KFQGAN-LYIKNLDDSI 317
V A N DD + VG A K E+ KE+ + K N +++KNL +
Sbjct: 347 VVAGNDTDDDDDDKAVGNATKS---------LVEETNKESKNTKLPHPNAIFVKNLPINP 397
Query: 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377
+ L FS G + S D S F+ + ++ A+ ++NG + + +
Sbjct: 398 SHDNLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLNGCKYMKRTIE 456
Query: 378 VALAQRKEDRRARLQAQFA-QMRPVAMASTV 407
V +K +R ++QF RP TV
Sbjct: 457 V----KKTERHHLEESQFENNTRPNNYKKTV 483
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 9/186 (4%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173
IF+KNL H L + FS G + S +D++ + F+ + + + AIEKLN
Sbjct: 388 IFVKNLPINPSHDNLLNFFSKIGPVKSV-YTSDVSKFDSSWAFITYKRIQDTKTAIEKLN 446
Query: 174 GMLLNDKQVYVG----HFLRKQ--ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG 227
G + + V H L + E +T N K T V++ NLS EE L G+
Sbjct: 447 GCKYMKRTIEVKKTERHHLEESQFENNTRPNNYKKT-VFLTNLSVICNEEFLNFLCGQER 505
Query: 228 TITSAVVMRDGDGKSKCF-GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
T VV+R + K+ + G+V + +DA R E + K D E Q K + +
Sbjct: 506 IKTERVVVRYYEEKTDTYSGYVRCASRNDAQRLFELMENKLLGDSEVKASWQQPKDVKLI 565
Query: 287 ELKHQF 292
E++ +
Sbjct: 566 EVEPSY 571
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 138/291 (47%), Gaps = 29/291 (9%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
G T+L V L N+T +L LF+ +G+V S ++ RD SLGYG+VN+ A++A R
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
A+ LN L K I+V Y+ PS N++I L + + K + D FS FG I++
Sbjct: 77 AINTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 134
Query: 141 CKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------MLLNDKQVY--- 183
+V D G S+G F++FD A++AI NG N V+
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNPVHHQA 194
Query: 184 ---------VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
V H + N S +++ NL + E L + FG +G +T+ V
Sbjct: 195 QRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKV 254
Query: 235 MRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+RD K K FGFV N ++AA A+ +LNG + DK V KS +
Sbjct: 255 IRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 305
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 137/296 (46%), Gaps = 26/296 (8%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168
G N+ + L + + L FS+ G + S K+ D + G S GYGFV + + A++A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
I LNG+ L K + V + +E+ K N+Y+ L + T++D++ F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY----ARPSSEVIKD--ANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 229 ITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE 287
I ++ V+ D G S+ F+ F+ +A A+ + NG K + K +
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI--TVKFAANPNP 189
Query: 288 LKHQ-----FEQNMKEAADKFQGAN----------LYIKNLDDSIDDEKLKQLFSPFGSI 332
+ HQ F + G N ++I NL D+ L Q+F PFG++
Sbjct: 190 VHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAV 249
Query: 333 TSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
T+ KV+RD + +G GFV + EEA+ A+ +NG + K L V+ K +
Sbjct: 250 TNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 305
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 24/205 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+++L+ F G + SA ++RD G S +GFVN+ + DA RA+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ SE + ANLYI L ++ +
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSE------------------VIKDANLYISGLPRTMTQKD 121
Query: 322 LKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
++ +FS FG I + +V+ D +G+SRG F+ F EA A+ NG S+P+ V
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAM 403
A QAQ + P+ +
Sbjct: 182 KFAANPNP--VHHQAQRFRFSPMGV 204
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 288 LKHQFEQNMKEAADKFQG-ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGIS 345
+ + +E +M E G NL + L ++ ++L+ LFS G + S K++RD +G S
Sbjct: 1 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
G GFV + T ++A RA+ +NG + SK + V+ A+
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97
>gi|50290407|ref|XP_447635.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526945|emb|CAG60572.1| unnamed protein product [Candida glabrata]
Length = 602
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 186/417 (44%), Gaps = 64/417 (15%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L+VG+L +T +L ++F +S +VC + RSLG+GY+NF N ++A RA E
Sbjct: 65 ALFVGNLAEEITSERLTEMFKVYKSFISAKVCTNADDNRSLGHGYINFGNKEDAERATED 124
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNL---DKAIDHKALHDTFSAFGNILSC 141
N+ + GK IR+M S RD RK+ NIF NL + + H+ +D F +GN+LS
Sbjct: 125 FNYNKIMGKEIRIMPSIRDSVYRKNFGTNIFFSNLPLQKEKLTHRMFYDIFRKYGNVLSV 184
Query: 142 KVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG-HF---LRKQ------ 191
K+ + SK GFV F+++ A+ I++ N + G HF LRK+
Sbjct: 185 KLDS-----SKNIGFVYFEDDTIARDVIKEFNNKEFLGNIISCGLHFDKELRKKPNFDKQ 239
Query: 192 ----------ERDTEI---NKSKF------------TNVYVKNLSESTTEEDLQKSFGEY 226
E++ EI NK + +++KNL T ++ F E
Sbjct: 240 ISKLDDDIIIEKEKEIFDSNKVEIKIDKDKVAIIQPNGIFIKNLPLDTNNNEILAIFSEV 299
Query: 227 GTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL 286
G I S + + + + FV +++ +A+ NGK ++ +V A K
Sbjct: 300 GPIKSVFLSPLNESREYLWAFVTYKDKASVEKAISLFNGKAIGNRNVFVTHAYSK----- 354
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMR--DPSG 343
N+ L++ NL D + LKQ+ + KV + +P
Sbjct: 355 -------YNIPTPK-----PILFLSNLSPICDRKFLKQIMNQLSVKPEDIKVHQSENPEH 402
Query: 344 ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRP 400
++ +G + F T ++ +A +N K+V +Y + K+++ +F Q+ P
Sbjct: 403 VT-STGTIQFKTQDDLDKAKKFLNNKLVSGSIIYATTRKSKKNQEQTNYREFCQILP 458
>gi|145347251|ref|XP_001418087.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578315|gb|ABO96380.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 319
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 118/201 (58%), Gaps = 11/201 (5%)
Query: 1 MAQVQAQGQNVNGGGAN------ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVR 54
MA + A G+ G G N A++ ++YVG+L+ VT+ L++LF Q G V +V
Sbjct: 1 MAPI-AGGRITAGAGVNLLGQHGADRNAEATVYVGNLDPQVTEEVLWELFLQAGPVTNVY 59
Query: 55 VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNI 114
V +D T GYG+V F N ++A +++LN L GKPI+V S D R N+
Sbjct: 60 VPKDRVTSTHQGYGFVEFRNEEDAEYGIKILNMVKLFGKPIKVNKSVGD--RRDEVGANL 117
Query: 115 FIKNLDKAIDHKALHDTFSAFGNIL-SCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKL 172
FI NLD ID K L+DTFSAFG ++ + K+ D NG SKG+GFV +D+ E++ AIE +
Sbjct: 118 FIGNLDPDIDEKLLYDTFSAFGVVINTPKIMRDPDNGASKGFGFVAYDSFEASDAAIEAM 177
Query: 173 NGMLLNDKQVYVGHFLRKQER 193
NG L +KQ+ V + +K +
Sbjct: 178 NGQFLCNKQINVQYAYKKDSK 198
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
VYV NL TEE L + F + G +T+ V +D + +GFV F N +DA ++ L
Sbjct: 31 VYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRNEEDAEYGIKIL 90
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K V K+ E+ GANL+I NLD ID++ L
Sbjct: 91 NMVKLFGKPIKVNKSVGDRRDEV------------------GANLFIGNLDPDIDEKLLY 132
Query: 324 QLFSPFGS-ITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG I + K+MRDP +G S+G GFVA+ + E + A+ MNG+ + +K + V A
Sbjct: 133 DTFSAFGVVINTPKIMRDPDNGASKGFGFVAYDSFEASDAAIEAMNGQFLCNKQINVQYA 192
Query: 382 QRKEDRRARLQAQ 394
+K+ + R +Q
Sbjct: 193 YKKDSKGERHGSQ 205
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 9/192 (4%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ NLD + + L + F G + + V D + +GYGFV+F NEE A+ I+ L
Sbjct: 31 VYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRNEEDAEYGIKIL 90
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT-ITS 231
N + L K + V + +R E+ N+++ NL E+ L +F +G I +
Sbjct: 91 NMVKLFGKPIKVNKSV--GDRRDEVG----ANLFIGNLDPDIDEKLLYDTFSAFGVVINT 144
Query: 232 AVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
+MRD D G SK FGFV +++ + + A+EA+NG+ +K+ V A KK +
Sbjct: 145 PKIMRDPDNGASKGFGFVAYDSFEASDAAIEAMNGQFLCNKQINVQYAYKKDSKGERHGS 204
Query: 291 QFEQNMKEAADK 302
Q E+ + ++ ++
Sbjct: 205 QAERLLAQSIER 216
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ AD+ A +Y+ NLD + +E L +LF G +T+ V +D + +G GFV F
Sbjct: 20 QHGADRNAEATVYVGNLDPQVTEEVLWELFLQAGPVTNVYVPKDRVTSTHQGYGFVEFRN 79
Query: 356 PEEASRALLEMNGKMVVSKPLYV--ALAQRKEDRRARL 391
E+A + +N + KP+ V ++ R+++ A L
Sbjct: 80 EEDAEYGIKILNMVKLFGKPIKVNKSVGDRRDEVGANL 117
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++Y+G+L+ VTD +++LF Q G VV+V + +D + GYG+V F + ++A A+++
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
++ L GKPI+V + +D ++ GA N+FI NLD ID K L++TFSAFG+ILS K+
Sbjct: 80 MHMIKLYGKPIKVNKASQDKRTQEVGA-NLFIGNLDTEIDEKTLYETFSAFGHILSTKIM 138
Query: 145 TDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
+ G SKGYGFV +DN ES+ A+ +NG L K + V + +K
Sbjct: 139 RNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKK 185
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 25/206 (12%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
+Y+ NL + T++ + + F + G + + + +D G+ + +GFV F++ +DA A++
Sbjct: 20 TIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYAIKI 79
Query: 263 LNGKKFDDKEWYVGKA-QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
++ K K V KA Q K +E+ GANL+I NLD ID++
Sbjct: 80 MHMIKLYGKPIKVNKASQDKRTQEV------------------GANLFIGNLDTEIDEKT 121
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
L + FS FG I S K+MR+P +G+S+G GFV++ E + AL MNG+ + +K + V
Sbjct: 122 LYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEY 181
Query: 381 AQRKEDRRARLQAQ----FAQMRPVA 402
A +K+ + R +Q A RP+A
Sbjct: 182 AFKKDAKGERHGSQAERLLAANRPLA 207
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 7/183 (3%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P ++ I+I NLD+ + + + F G +++ + D ++G+ +GYGFV+F +E
Sbjct: 11 PLYERNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSE 70
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
E A AI+ ++ + L K + V + +R E+ N+++ NL E+ L ++
Sbjct: 71 EDADYAIKIMHMIKLYGKPIKVNK-ASQDKRTQEVG----ANLFIGNLDTEIDEKTLYET 125
Query: 223 FGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
F +G I S +MR+ + G SK +GFV+++N + + A+ A+NG+ K V A KK
Sbjct: 126 FSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKK 185
Query: 282 SER 284
+
Sbjct: 186 DAK 188
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRA 362
Q A +YI NLD + D+ + +LF G + + + +D SG +G GFV F + E+A A
Sbjct: 17 QEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDADYA 76
Query: 363 LLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+ M+ + KP+ V A +D+R +
Sbjct: 77 IKIMHMIKLYGKPIKVNKAS--QDKRTQ 102
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 82/102 (80%), Gaps = 1/102 (0%)
Query: 274 YVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333
YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLDD IDDE+L++ FSPFG+IT
Sbjct: 2 YVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTIT 61
Query: 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
S KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KP
Sbjct: 62 SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 102
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 15/98 (15%)
Query: 182 VYVGHFLRKQERDTEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGT 228
+YVG +K ER TE+ K KF N+YVKNL + +E L+K F +GT
Sbjct: 1 IYVGRAQKKVERQTEL-KRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 59
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266
ITSA VM +G G+SK FGFV F + ++A +AV +NG+
Sbjct: 60 ITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 96
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172
N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++
Sbjct: 35 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 93
Query: 173 NGMLLNDK 180
NG ++ K
Sbjct: 94 NGRIVATK 101
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+LYV +L+ + D +L F+ G + S +V + RS G+G+V FS+ +EA +A+
Sbjct: 34 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVT 91
Query: 84 MLNFTPLNGKP 94
+N + KP
Sbjct: 92 EMNGRIVATKP 102
>gi|432092097|gb|ELK24806.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 179
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 80/115 (69%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+ + SLYV DL +VTD+ LY+ F+ V+S+ VC + SLGY Y+NF +
Sbjct: 5 ASSYPMASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPAD 64
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF 132
A RAL+ +NF + GKPI +M+S RDPS+RKS GNIFIK LDK+ID+KAL+DTF
Sbjct: 65 AERALDTMNFDVIKGKPIHIMWSQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-GISRGSGFVAFS 354
M AA + A+LY+ +L + D L + FSP + S V + S G ++ F
Sbjct: 1 MNTAASSYPMASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+++ +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIHIMWSQRDPSVR 94
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L++ FS +LS V + + S GY ++ F A++A++
Sbjct: 11 ASLYVADLHWDVTDAMLYEQFSPARPVLSIWVCHNKIISHSLGYAYINFQQPADAERALD 70
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSF 223
+N ++ K +++ +RD + KS N+++K L +S + L +F
Sbjct: 71 TMNFDVIKGKPIHIMW----SQRDPSVRKSAVGNIFIKKLDKSIDNKALYDTF 119
>gi|328767802|gb|EGF77850.1| hypothetical protein BATDEDRAFT_33617 [Batrachochytrium
dendrobatidis JAM81]
Length = 308
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
S+YVG++E TDS +++LF Q G VV+V + +D T+ GYG+V F Q+A A ++
Sbjct: 12 SVYVGNIEDRATDSLIWELFLQAGPVVNVYLPKDRVTQMHQGYGFVEFMTEQDAEYASKV 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKP+RV + D GA +FI NLD +D KAL+DTFSAFG I S K+
Sbjct: 72 MNMVRLYGKPLRVNKATSDKMALDVGA-TLFISNLDMTVDEKALYDTFSAFGMIASTPKI 130
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190
+ + G+SKGYGFV F E++ AIE +NG L ++ + V + L+K
Sbjct: 131 SRNPETGESKGYGFVSFSTFEASDAAIEAMNGQFLANRAIAVSYALKK 178
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 26/205 (12%)
Query: 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK-SKCFGF 247
R+++R+ E +VYV N+ + T+ + + F + G + + + +D + + +GF
Sbjct: 3 RQEDRNKE------ASVYVGNIEDRATDSLIWELFLQAGPVVNVYLPKDRVTQMHQGYGF 56
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
V F DA A + +N + K V KA K A D GA
Sbjct: 57 VEFMTEQDAEYASKVMNMVRLYGKPLRVNKATSD---------------KMALDV--GAT 99
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
L+I NLD ++D++ L FS FG I S K+ R+P +G S+G GFV+FST E + A+
Sbjct: 100 LFISNLDMTVDEKALYDTFSAFGMIASTPKISRNPETGESKGYGFVSFSTFEASDAAIEA 159
Query: 366 MNGKMVVSKPLYVALAQRKEDRRAR 390
MNG+ + ++ + V+ A +K+ + R
Sbjct: 160 MNGQFLANRAIAVSYALKKDGKGER 184
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 9 QNVNGGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
++ GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T
Sbjct: 10 RSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNH 69
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
GYG+V F N +A AL+++N L GK +R+ S +D GA N+F+ NLD +D
Sbjct: 70 QGYGFVEFRNEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVD 128
Query: 125 HKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
K ++DTFSAFGNI+S K+ D G S+G+GFV FD E++ A+ +NG + ++ ++
Sbjct: 129 EKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIH 188
Query: 184 VGHFLRKQER 193
V + +K R
Sbjct: 189 VSYAYKKDTR 198
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEA 262
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++
Sbjct: 30 TLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKL 89
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
+N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 90 MNMVKLYGKALRLNKS-AQDRRNFDV----------------GANVFLGNLDPDVDEKTI 132
Query: 323 KQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG+I S K+MRDP +G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 133 YDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 382 QRKEDRRAR 390
+K+ R R
Sbjct: 193 YKKDTRGER 201
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A AL MN + K L L + +DRR
Sbjct: 78 RNEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 6/186 (3%)
Query: 13 GGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYG 68
GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T GYG
Sbjct: 14 GGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYG 73
Query: 69 YVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKAL 128
+V F+N +A AL+++N L GK +R+ S +D GA NIF+ NLD +D K +
Sbjct: 74 FVEFTNEVDADYALKLMNMVKLYGKSLRLNKSAQDRRNFDVGA-NIFLGNLDPDVDEKTI 132
Query: 129 HDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
+DTFS FGNIL+ K+ D G S+G+GFV FD E++ A+ +NG + ++ ++V +
Sbjct: 133 YDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYA 192
Query: 188 LRKQER 193
+K R
Sbjct: 193 YKKDTR 198
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 19/188 (10%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEVDADYALKLM 90
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 91 NMVKLYGKSLRLNKS-AQDRRNFDV----------------GANIFLGNLDPDVDEKTIY 133
Query: 324 QLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I + K+MRDP +GISRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 134 DTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 383 RKEDRRAR 390
+K+ R R
Sbjct: 194 KKDTRGER 201
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+ +A AL MN + K L L + +DRR
Sbjct: 78 TNEVDADYALKLMNMVKLYGKSLR--LNKSAQDRR 110
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 9 QNVNGGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
++ GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T
Sbjct: 10 RSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNH 69
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
GYG+V F N +A AL+++N L GK +R+ S +D GA N+F+ NLD +D
Sbjct: 70 QGYGFVEFRNEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVD 128
Query: 125 HKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
K ++DTFSAFGNI+S K+ D G S+G+GFV FD E++ A+ +NG + ++ ++
Sbjct: 129 EKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIH 188
Query: 184 VGHFLRKQER 193
V + +K R
Sbjct: 189 VSYAYKKDTR 198
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 19/188 (10%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKLM 90
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 91 NMVKLYGKALRLNKS-AQDRRNFDV----------------GANVFLGNLDPDVDEKTIY 133
Query: 324 QLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I S K+MRDP +G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 134 DTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 383 RKEDRRAR 390
+K+ R R
Sbjct: 194 KKDTRGER 201
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A AL MN + K L L + +DRR
Sbjct: 78 RNEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 9 QNVNGGGANANQF----GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
++ GGGA+ Q +LY+G+L++ V D L++LF Q G V +V V RD T
Sbjct: 10 RSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNH 69
Query: 65 LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAID 124
GYG+V F N +A AL+++N L GK +R+ S +D GA N+F+ NLD +D
Sbjct: 70 QGYGFVEFRNEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGA-NVFLGNLDPDVD 128
Query: 125 HKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183
K ++DTFSAFGNI+S K+ D G S+G+GFV FD E++ A+ +NG + ++ ++
Sbjct: 129 EKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIH 188
Query: 184 VGHFLRKQER 193
V + +K R
Sbjct: 189 VSYAYKKDTR 198
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 19/188 (10%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
+Y+ NL ++ L + F + G + + V RD G + +GFV F N DA A++ +
Sbjct: 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKLM 90
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K + K+ + R ++ GAN+++ NLD +D++ +
Sbjct: 91 NMVKLYGKALRLNKS-AQDRRNFDV----------------GANVFLGNLDPDVDEKTIY 133
Query: 324 QLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG+I S K+MRDP +G+SRG GFV+F T E + AL MNG+ + ++P++V+ A
Sbjct: 134 DTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHVSYAY 193
Query: 383 RKEDRRAR 390
+K+ R R
Sbjct: 194 KKDTRGER 201
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAF 353
++ + ++ Q A LYI NLD +DD+ L +LF G + + V RD +G +G GFV F
Sbjct: 18 DITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEF 77
Query: 354 STPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
+A AL MN + K L L + +DRR
Sbjct: 78 RNEVDADYALKLMNMVKLYGKALR--LNKSAQDRR 110
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 108/169 (63%), Gaps = 3/169 (1%)
Query: 27 YVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86
YVG+L+ VT+ L++LF Q G VV+V V +D T GYG+V F + ++A A+++LN
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVAT 145
L GKPIRV + +D GA N+F+ NLD +D K L+DTFSAFG I++ K+
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGA-NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
Query: 146 DLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GFV +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 147 DPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL TEE L + F + G + + V +D + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL++ NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFVGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GFV++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 131/256 (51%), Gaps = 14/256 (5%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYVG+L V ++ L D+F+ +G V VR+ +D +T S G +V F + Q AA AL+
Sbjct: 6 ALYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKT 65
Query: 85 LNFTPLNGKPIRVMYS-HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
+N L K +R+ ++ ++ + + +IF+ NL + L F G +V
Sbjct: 66 INGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARV 125
Query: 144 ATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
D + G+SKG+GFV F +E+A+KA+ +++G + ++ G K E T ++
Sbjct: 126 MWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTV 185
Query: 203 -------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
TNVYV NL EEDL+ +FG YG IT G +GFV + +
Sbjct: 186 DRADPANTNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHKGG-----YGFVTYRDHSA 240
Query: 256 AARAVEALNGKKFDDK 271
A +A+ +NGK+ K
Sbjct: 241 AVQAIVGMNGKELKGK 256
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 15/263 (5%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172
+++ NL ++ L D FS G + ++ D G S G FV+F++ ++A A++ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
NG +L +K+V + +K++ + N + ++++V NLS + L ++F G + A
Sbjct: 67 NGRILYNKEVRIQWAFQKEKTE---NTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDA 123
Query: 233 VVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
VM D G+SK FGFV+F + A +A+ ++G + + G A K+E L
Sbjct: 124 RVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGL--- 180
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
+ + + AD N+Y+ NL + +E L+ F +G IT K G GFV
Sbjct: 181 -DIDTVDRADP-ANTNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHKG-----GYGFV 233
Query: 352 AFSTPEEASRALLEMNGKMVVSK 374
+ A +A++ MNGK + K
Sbjct: 234 TYRDHSAAVQAIVGMNGKELKGK 256
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78
N + ++VG+L +V D L F +G+ RV D ST RS G+G+V+F + A
Sbjct: 89 NTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAA 148
Query: 79 ARALEMLNFTPLNGKPIRVMYSHR----------DPSLRKSGAG-NIFIKNLDKAIDHKA 127
+AL ++ + IR ++H D R A N+++ NL + +
Sbjct: 149 EKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEVMEED 208
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182
L F A+G I K GYGFV + + +A +AI +NG L K V
Sbjct: 209 LRAAFGAYGEITGLKPC-----HKGGYGFVTYRDHSAAVQAIVGMNGKELKGKMV 258
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEM 366
LY+ NL +++ L+ +FS G+++ ++++D +G S GS FV F + A+ AL +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 367 NGKMVVSKPLYVALAQRKE 385
NG+++ +K + + A +KE
Sbjct: 67 NGRILYNKEVRIQWAFQKE 85
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YVG+L V + L F G++ ++ C GYG+V + + A +A+
Sbjct: 193 TNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCH------KGGYGFVTYRDHSAAVQAIV 246
Query: 84 MLNFTPLNGKPIRVMY 99
+N L GK ++ +
Sbjct: 247 GMNGKELKGKMVKCSW 262
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 50/300 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + +A +A+
Sbjct: 35 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 94
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ +L K ++ K + FS +G I++ ++
Sbjct: 95 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRI 152
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------------------MLL 177
D + G S+G GF++FD A++AI+ LNG +L
Sbjct: 153 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLT 212
Query: 178 NDKQV----YVG--HFLRKQERDTEINKSKFTN---------------VYVKNLSESTTE 216
+ Q Y G H ++ R + I TN ++V NLS E
Sbjct: 213 HLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADE 272
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+ V
Sbjct: 273 SVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 332
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 43/312 (13%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 95
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV +L ++ ++++++ F +YG IT
Sbjct: 96 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIIT 149
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK------------FDDKEWYVGKA 278
S +++ G S+ GF+ F+ +A A++ LNG+K ++ G+A
Sbjct: 150 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 209
Query: 279 ------QKKSEREL-ELKHQ-----FEQNMKEAADKFQGANL----------YIKNLDDS 316
Q + R L HQ F ++ G +L ++ NL
Sbjct: 210 LLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPE 269
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 270 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 329
Query: 376 LYVALAQRKEDR 387
L V+ K+ +
Sbjct: 330 LQVSFKTSKQHK 341
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 35 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 94
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG K K V A+ S + ANLY+ +L +++ ++
Sbjct: 95 TLNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSSLPKTMNQKE 136
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYV 378
++QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ + S+P+ V
Sbjct: 137 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITV 196
Query: 379 ALA 381
A
Sbjct: 197 KFA 199
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 261 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 320
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 321 NGYRLGDRVLQVSF 334
>gi|365812510|ref|NP_001002172.2| ELAV-like protein 2 [Danio rerio]
Length = 389
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 152/330 (46%), Gaps = 64/330 (19%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N ++ T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ +
Sbjct: 61 NGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPK 120
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A +A+ LN L K I+V Y+ PS N+++ L K + K L FS FG
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQFG 178
Query: 137 NILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG--------------------- 174
I++ ++ D + G S+G GF++FD A++AI+ LNG
Sbjct: 179 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Query: 175 --------MLLNDKQVYVGHFLRKQER---DTEIN-----KSKFTN-------------- 204
+ + + Y G ++ +R D +N KS+F+
Sbjct: 239 SSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGINL 298
Query: 205 ---------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSD 254
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D
Sbjct: 299 PAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 358
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+AA A+ +LNG + D+ V K+ +
Sbjct: 359 EAAVAIASLNGYRLGDRVLQVSFKTNKTHK 388
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 174/395 (44%), Gaps = 65/395 (16%)
Query: 51 VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN---FTPLNGKPIRVMYSHRDPSLR 107
++VR+C S RS + ++ AA ++ N T NG P V + P
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPSCTSSNG-PNSVSNTCTSPVEM 59
Query: 108 KSGA----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
+G+ N+ + L + + + L F + G I SCK+ D + GQS GYGFV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
+ A+KAI LNG+ L K + V + + I + N+YV L ++ T+++L++
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQL 173
Query: 223 FGEYG-TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF------------- 268
F ++G ITS +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFAN 233
Query: 269 ----------------DDKEWYVGKAQKKSER---------ELELKHQFEQNMKEAADKF 303
Y G ++++R +K +F +
Sbjct: 234 NPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSL 293
Query: 304 QGANL----------YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVA 352
G NL ++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV
Sbjct: 294 AGINLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 353
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
+ +EA+ A+ +NG + + L V+ K +
Sbjct: 354 MTNYDEAAVAIASLNGYRLGDRVLQVSFKTNKTHK 388
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ DA +A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 128 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 169
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS FG I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 170 LEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITV 229
Query: 379 ALAQRKEDRRAR 390
A + ++
Sbjct: 230 KFANNPSQKSSQ 241
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 51/310 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM------------LLNDKQVYVGHFLRK 190
D + G S+G GF++FD A++AI+ LNG N+ V H +
Sbjct: 185 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILS 244
Query: 191 QERDTEINK------------SKFTN-----------------------VYVKNLSESTT 215
Q + + S+F+ ++V NL+
Sbjct: 245 QLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDAD 304
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 305 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 364
Query: 275 VGKAQKKSER 284
V K+ +
Sbjct: 365 VSFKTSKTHK 374
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 44/313 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 128 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK +
Sbjct: 182 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHT 241
Query: 285 ELELKHQ-----FEQNMKEAADKFQ------------------------GANLYIKNLDD 315
L +Q + + + A +F G +++ NL
Sbjct: 242 ILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAP 301
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 302 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 361
Query: 375 PLYVALAQRKEDR 387
L V+ K +
Sbjct: 362 VLQVSFKTSKTHK 374
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 168
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 169 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 228
Query: 379 ALAQRKEDR 387
A +
Sbjct: 229 KFANNPSQK 237
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 85/123 (69%)
Query: 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI 332
YV +AQ K+ER LK QF +F G NLY+KNL +++DD +LK++F PFG+I
Sbjct: 50 LYVARAQSKAERAAVLKEQFAAGKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTI 109
Query: 333 TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
TS KVM D G+SRG GFV FST EEA++A+ +M+ K++ KPLYV + +++E R RLQ
Sbjct: 110 TSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQ 169
Query: 393 AQF 395
++
Sbjct: 170 QRY 172
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
N+YVKNL E+ + +L++ F +GTITS VM D G S+ FGFV F ++A +AV
Sbjct: 83 VNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTD 142
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQF 292
++ K K YVG +K+ +R L+ ++
Sbjct: 143 MHLKLIGGKPLYVGMHEKREQRLERLQQRY 172
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
G N+++KNL + +D L F FG I S KV TD G S+G+GFV F E A KA+
Sbjct: 81 GGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAV 140
Query: 170 EKLNGMLLNDKQVYVGHFLRKQER 193
++ L+ K +YVG ++++R
Sbjct: 141 TDMHLKLIGGKPLYVGMHEKREQR 164
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNF 72
G GA +FG +LYV +L V D++L +F G + SV+V D S G+G+V F
Sbjct: 72 GKGAQGGRFGGVNLYVKNLGETVDDNELKRMFEPFGTITSVKVMTD-DKGVSRGFGFVCF 130
Query: 73 SNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRK 108
S +EA +A+ ++ + GKP+ V M+ R+ L +
Sbjct: 131 STHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLER 167
>gi|123407360|ref|XP_001302992.1| embryonic poly [Trichomonas vaginalis G3]
gi|121884333|gb|EAX90062.1| embryonic poly, putative [Trichomonas vaginalis G3]
Length = 426
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 129/239 (53%), Gaps = 16/239 (6%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++VGDL +V ++ + ++F G S V + +V F + + A RA+ +
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 86 NFTPLNGKPIRVMYSHRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
N+T L+G PIR+++S DP + K+ G +FI+ LD+ I+ LHD FS FG I+SCK
Sbjct: 68 NYTKLDGVPIRILWS--DPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSCK 125
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKF 202
+ NG+S+GYGF+ F E+ A++A L +N K + + + + ++ E F
Sbjct: 126 IPL-TNGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE---ETF 181
Query: 203 TNVYVKNLSEST--TEEDLQKSFGEYGTIT-----SAVVMRDGDGKSKCFGFVNFENSD 254
TNV++K L T++DL F E+G + + R DG S FGF++F++ +
Sbjct: 182 TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSSCEFGFLHFKHHE 240
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 17/180 (9%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
V+V +L S E +++ F +YG+ S V ++ K F FV FE+ + A RA+ +
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K D + + ++R ++ N+ GA L+I+ LD++I+ +L
Sbjct: 68 NYTKLDGVPIRILWSDPGTKRAIK------NNV--------GA-LFIRGLDENIEVSQLH 112
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
FS FG I SCK+ +G SRG GF+ F ++A RA ++ + KP+ + Q+
Sbjct: 113 DAFSNFGEIVSCKIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQK 171
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+L++ L+ N+ SQL+D F+ G++VS ++ L+ +S GYG++ F +A RA
Sbjct: 96 ALFIRGLDENIEVSQLHDAFSNFGEIVSCKI--PLTNGKSRGYGFITFYKEDDAKRAKTD 153
Query: 85 LNFTPLNGKPIRVMYSHRDPSLR--KSGAGNIFIKNLDKAI--DHKALHDTFSAFGNILS 140
L +NGKPI++ + ++ P+ + + N+FIK L I L + F FG+ +
Sbjct: 154 LADASINGKPIQIEF-YQKPTRKNPEETFTNVFIKPLPADIFKTDDDLANFFKEFGDFVV 212
Query: 141 CKVATDL-----NGQSKGYGFVQFDNEE 163
A +G S +GF+ F + E
Sbjct: 213 TGKANPAIKRKEDGSSCEFGFLHFKHHE 240
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 27/248 (10%)
Query: 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ-SKGYGFVQFDNEESAQKAIEKL 172
+F+ +L ++D + + F +G+ S V + K + FV F++ E A++AI ++
Sbjct: 8 VFVGDLPGSVDENFIKEIFKDYGSFPSGTVTVKKHKSLDKSFAFVTFESHELAKRAISEV 67
Query: 173 NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSA 232
N L+ + + L K+ ++++ L E+ L +F +G I S
Sbjct: 68 NYTKLDGVPIRI---LWSDPGTKRAIKNNVGALFIRGLDENIEVSQLHDAFSNFGEIVSC 124
Query: 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQF 292
+ +GKS+ +GF+ F DDA RA L + K + QK + + E
Sbjct: 125 KIPLT-NGKSRGYGFITFYKEDDAKRAKTDLADASINGKPIQIEFYQKPTRKNPE----- 178
Query: 293 EQNMKEAADKFQGANLYIKNLDDSI--DDEKLKQLFSPFGSIT-----SCKVMRDPSGIS 345
+ F N++IK L I D+ L F FG + + R G S
Sbjct: 179 --------ETF--TNVFIKPLPADIFKTDDDLANFFKEFGDFVVTGKANPAIKRKEDGSS 228
Query: 346 RGSGFVAF 353
GF+ F
Sbjct: 229 CEFGFLHF 236
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 150 QSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
+SKG+GFV F +ESAQ A+E LN K Y+G F K+ER+ E
Sbjct: 283 ESKGFGFVLFKTKESAQNALENAVITPLNGKTPYIGLFKMKEERERE 329
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 3/169 (1%)
Query: 27 YVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86
YVG+L+ +++ L++LF Q G VV+V V +D T + GYG+V F + ++A A+++LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVAT 145
L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
Query: 146 DLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ AA++ Q A Y+ NLD I +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 50/300 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + +A +A+
Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 93
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ +L K ++ K + FS +G I++ ++
Sbjct: 94 TLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRI 151
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG-------------------------MLL 177
D + G S+G GF++FD A++AI+ LNG +L
Sbjct: 152 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLT 211
Query: 178 NDKQV----YVG--HFLRKQERDTEINKSKFTN---------------VYVKNLSESTTE 216
+ Q Y G H ++ R + I TN ++V NLS E
Sbjct: 212 HLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADE 271
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+ V
Sbjct: 272 SVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 331
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 43/312 (13%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + F + G I SCK+ D + GQS GYGFV + + A KAI
Sbjct: 35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 94
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV +L ++ ++++++ F +YG IT
Sbjct: 95 LNGLKLQTKTIKVSY---ARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIIT 148
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK------------FDDKEWYVGKA 278
S +++ G S+ GF+ F+ +A A++ LNG+K ++ G+A
Sbjct: 149 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQA 208
Query: 279 ------QKKSEREL-ELKHQ-----FEQNMKEAADKFQGANL----------YIKNLDDS 316
Q + R L HQ F ++ G +L ++ NL
Sbjct: 209 LLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPE 268
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D+ L QLF PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 269 ADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 328
Query: 376 LYVALAQRKEDR 387
L V+ K+ +
Sbjct: 329 LQVSFKTSKQHK 340
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+ + FG G I S ++RD G+S +GFVN+ + +DA +A+
Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 93
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG K K V A+ S + ANLY+ +L +++ ++
Sbjct: 94 TLNGLKLQTKTIKVSYARPSSA------------------SIRDANLYVSSLPKTMNQKE 135
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYV 378
++QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ + S+P+ V
Sbjct: 136 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITV 195
Query: 379 ALA 381
A
Sbjct: 196 KFA 198
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
++V +L +S L+ LF G V +V+V RD +T + G+G+V +N EAA A+ L
Sbjct: 260 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 319
Query: 86 NFTPLNGKPIRVMY 99
N L + ++V +
Sbjct: 320 NGYRLGDRVLQVSF 333
>gi|440797982|gb|ELR19056.1| spliceosomal protein, putative [Acanthamoeba castellanii str. Neff]
Length = 316
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 111/174 (63%), Gaps = 3/174 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
++YVG+L++ V+++ L++L Q G VV+V + +D T GYG+V F+ ++A A+++
Sbjct: 12 TVYVGELDSRVSEALLWELMLQSGPVVNVYIPKDKLTNLHQGYGFVEFATEEDAEYAIKI 71
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC-KV 143
+N L GKP+RV + RD GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 72 MNMIKLYGKPLRVNKAKRDGKTVDVGA-NLFIGNLDAEVDEKLLYDTFSAFGVIITTPKI 130
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
D G+S+G+GFV FD+ ES+ AIE +N L ++ + V + ++K + E
Sbjct: 131 MRDPETGESRGFGFVSFDSFESSDAAIESMNNQYLCNRAITVSYAIKKDSKTGE 184
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 20/186 (10%)
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEAL 263
VYV L +E L + + G + + + +D + +GFV F +DA A++ +
Sbjct: 13 VYVGELDSRVSEALLWELMLQSGPVVNVYIPKDKLTNLHQGYGFVEFATEEDAEYAIKIM 72
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K K V KA K+ + +++ GANL+I NLD +D++ L
Sbjct: 73 NMIKLYGKPLRVNKA-KRDGKTVDV----------------GANLFIGNLDAEVDEKLLY 115
Query: 324 QLFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
FS FG I T+ K+MRDP +G SRG GFV+F + E + A+ MN + + ++ + V+ A
Sbjct: 116 DTFSAFGVIITTPKIMRDPETGESRGFGFVSFDSFESSDAAIESMNNQYLCNRAITVSYA 175
Query: 382 QRKEDR 387
+K+ +
Sbjct: 176 IKKDSK 181
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 50/309 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM------------LLNDKQVYVGHFLRK 190
D + G S+G GF++FD A++AI+ LNG N+ V H +
Sbjct: 185 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILS 244
Query: 191 QERDT-----------EINKSKFTN-----------------------VYVKNLSESTTE 216
Q + + + +F+ ++V NL+ E
Sbjct: 245 QLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADE 304
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+ V
Sbjct: 305 SILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 364
Query: 276 GKAQKKSER 284
K+ +
Sbjct: 365 SFKTSKTHK 373
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 150/312 (48%), Gaps = 43/312 (13%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 128 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK +
Sbjct: 182 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHT 241
Query: 285 ELELKHQ-----FEQNMKEAADKFQ-----------------------GANLYIKNLDDS 316
L +Q + + + A +F+ G +++ NL
Sbjct: 242 ILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPD 301
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 302 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 361
Query: 376 LYVALAQRKEDR 387
L V+ K +
Sbjct: 362 LQVSFKTSKTHK 373
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 168
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 169 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 228
Query: 379 ALA 381
A
Sbjct: 229 KFA 231
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 78/95 (82%)
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
++ QGANLY+KNLDD+IDD +LK+ FS FGSITS KVM D G S+G GFV F+T EEAS
Sbjct: 2 NRTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEAS 61
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
+A+ EM+G+++VSKPLYV AQRKE+R+A L +Q+
Sbjct: 62 KAINEMSGRIIVSKPLYVTFAQRKEERKAFLASQY 96
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 106 LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165
+ ++ N+++KNLD AID L + FS FG+I S KV D G SKG+GFV F +E A
Sbjct: 1 MNRTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEA 60
Query: 166 QKAIEKLNGMLLNDKQVYVGHFLRKQER 193
KAI +++G ++ K +YV RK+ER
Sbjct: 61 SKAINEMSGRIIVSKPLYVTFAQRKEER 88
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 63/100 (63%)
Query: 197 INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256
+N+++ N+YVKNL ++ + L++ F ++G+ITSA VM D G SK FGFV F ++A
Sbjct: 1 MNRTQGANLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEA 60
Query: 257 ARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
++A+ ++G+ K YV AQ+K ER+ L Q+ +
Sbjct: 61 SKAINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNHRV 100
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+LYV +L+ + D++L + F++ G + S +V D S G+G+V F+ +EA++A+
Sbjct: 8 NLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCD-EKGASKGFGFVCFATQEEASKAINE 66
Query: 85 LNFTPLNGKPIRVMYSHR 102
++ + KP+ V ++ R
Sbjct: 67 MSGRIIVSKPLYVTFAQR 84
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 108/169 (63%), Gaps = 3/169 (1%)
Query: 27 YVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86
YVG+L+ VT+ L++LF Q G VV+V V +D T GYG+V F + ++A A+++LN
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVAT 145
L GKPIRV + +D GA N+F+ NLD +D K L+DTFSAFG I++ K+
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGA-NLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
Query: 146 DLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GFV +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 147 DPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL TEE L + F + G + + V +D + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL++ NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKASQ-DKKSLDV----------------GANLFVGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GFV++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ V++ L++LF Q G VV+V V +D T GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAIKV 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
LN L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSVDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 145 MRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS-KCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D S + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + K++ D GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKASQD---------------KKSVDV--GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 10/246 (4%)
Query: 8 GQNVNG-GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
G N+ G A NQ T YVG+L+ + + L++LF Q G VV+V V +D T + G
Sbjct: 10 GANLLGQHAAERNQDATA--YVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQG 67
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
YG+V F + ++A A+++LN L GKPIRV + +D GA N+FI NLD +D K
Sbjct: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEK 126
Query: 127 ALHDTFSAFGNILS-CKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184
L+DTFSAFG I++ K+ D G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V
Sbjct: 127 LLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
Query: 185 GHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT-SAVVMRDGDGKSK 243
+ +K DT+ + V S TT++ + G T + +G
Sbjct: 187 SYAYKK---DTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSAPQANGVAPVP 243
Query: 244 CFGFVN 249
FVN
Sbjct: 244 PRPFVN 249
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL EE L + F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ AA++ Q A Y+ NLD I +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|402697279|gb|AFQ90827.1| polyA-binding protein cytoplasmic 1, partial [Chrysemys picta]
Length = 127
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILS KV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG S VM D GKSK FGFV+FE +
Sbjct: 60 LGARAKEFTNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHE 119
Query: 255 DAARAV 260
DA +AV
Sbjct: 120 DAQKAV 125
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 11/137 (8%)
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + + ERE EL
Sbjct: 2 ILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 60
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ A +F N+YIKN + +DDE+LK+LF S KVM D SG S+G
Sbjct: 61 GAR--------AKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGF 110
Query: 349 GFVAFSTPEEASRALLE 365
GFV+F E+A +A+ E
Sbjct: 111 GFVSFERHEDAQKAVAE 127
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 64 SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIK 117
S GYG+V+F + A RA+E +N LN + + V + R + GA N++IK
Sbjct: 14 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 73
Query: 118 NLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169
N + +D + L + F LS KV TD +G+SKG+GFV F+ E AQKA+
Sbjct: 74 NFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 125
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
+I S KV+ D +G S+G GFV F T E A RA+ +MNG ++ + ++V + +++R A
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 59
Query: 391 LQAQ 394
L A+
Sbjct: 60 LGAR 63
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN 74
GA A +F T++Y+ + ++ D +L +LF +SV+V D S +S G+G+V+F
Sbjct: 61 GARAKEF--TNVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESG-KSKGFGFVSFER 117
Query: 75 AQEAARAL 82
++A +A+
Sbjct: 118 HEDAQKAV 125
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
+ YVG+L+ V++ L++LF Q G VV+V V +D T GYG+V F + ++A A+++
Sbjct: 26 TAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKI 85
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKV 143
+N L GKPIRV + +D GA N+FI NLD +D K LHDTFSAFG I++ K+
Sbjct: 86 MNMIKLFGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKI 144
Query: 144 ATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D G S+G+GF+ +D+ +++ AIE +NG L ++Q+ V + +K +
Sbjct: 145 MRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + +GFV F + +DA A++ +N
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKIMN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLFGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLHD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + + + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 115 FIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLN 173
++ NLD + + L + F G +++ V D + +GYGFV+F +EE A AI+ +N
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKIMN 87
Query: 174 GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI-TSA 232
+ L K + V + ++ ++ N+++ NL E+ L +F +G I T+
Sbjct: 88 MIKLFGKPIRVNK-ASQDKKSLDVG----ANLFIGNLDPDVDEKLLHDTFSAFGVIVTNP 142
Query: 233 VVMRDGD-GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+MRD + G S+ FGF+++++ D + A+EA+NG+ +++ V A KK +
Sbjct: 143 KIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ MN + KP+ V
Sbjct: 76 EEDADYAIKIMNMIKLFGKPIRV 98
>gi|296484904|tpg|DAA27019.1| TPA: ELAV-like 2-like [Bos taurus]
Length = 620
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 50/296 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 313 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 372
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 373 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 430
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG---------------------------- 174
D + G S+G GF++FD A++AI+ LNG
Sbjct: 431 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILS 490
Query: 175 -MLLNDKQVYVGHFLRKQER---------------DTEINKSKFTN--VYVKNLSESTTE 216
+ + + Y G ++ +R I T ++V NL+ E
Sbjct: 491 QLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADE 550
Query: 217 EDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271
L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 551 SILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 606
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 144/293 (49%), Gaps = 43/293 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 314 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 373
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 374 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 427
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK ++
Sbjct: 428 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 487
Query: 285 ELELKHQ-----FEQNMKEAADKFQ-----------------------GANLYIKNLDDS 316
L +Q + + + A +F+ G +++ NL
Sbjct: 488 ILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPD 547
Query: 317 IDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNG 368
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG
Sbjct: 548 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 600
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 313 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 372
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 373 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 414
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +GISRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 415 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 474
Query: 379 ALA 381
A
Sbjct: 475 KFA 477
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLE 365
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 314 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 373
Query: 366 MNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 374 LNGLRLQTKTIKVSYAR 390
>gi|449459840|ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
gi|449498825|ref|XP_004160645.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
Length = 379
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 108/169 (63%), Gaps = 3/169 (1%)
Query: 27 YVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86
YVG+L+ V++ L++LF Q G VV+V V +D T GYG++ F + ++A A+++LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLN 87
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVAT 145
L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
Query: 146 DLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + +GF+ F + +DA A++ LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ A ++ Q A Y+ NLD + +E L +LF G + + V +D + + +G GF+ F +
Sbjct: 16 QHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|49119672|gb|AAH72716.1| Zgc:91918 [Danio rerio]
Length = 360
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 152/330 (46%), Gaps = 64/330 (19%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N ++ T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ +
Sbjct: 32 NGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPK 91
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A +A+ LN L K I+V Y+ PS N+++ L K + K L FS FG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQFG 149
Query: 137 NILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG--------------------- 174
I++ ++ D + G S+G GF++FD A++AI+ LNG
Sbjct: 150 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Query: 175 --------MLLNDKQVYVGHFLRKQER---DTEIN-----KSKFTN-------------- 204
+ + + Y G ++ +R D +N KS+F+
Sbjct: 210 SSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGINL 269
Query: 205 ---------VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSD 254
++V NL+ E L + FG +G +T+ V+RD K K FGFV N D
Sbjct: 270 PAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 329
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSER 284
+AA A+ +LNG + D+ V K+ +
Sbjct: 330 EAAVAIASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 57/326 (17%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + A+KAI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 99
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F ++G IT
Sbjct: 100 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQFGRIIT 153
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF---------------------- 268
S +++ G S+ GF+ F+ +A A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQA 213
Query: 269 -------DDKEWYVGKAQKKSER---------ELELKHQFEQNMKEAADKFQGANL---- 308
Y G ++++R +K +F + G NL
Sbjct: 214 LLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGVTSLAGINLPAHA 273
Query: 309 ------YIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASR 361
++ NL D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+
Sbjct: 274 GTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAV 333
Query: 362 ALLEMNGKMVVSKPLYVALAQRKEDR 387
A+ +NG + + L V+ K +
Sbjct: 334 AIASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 22/192 (11%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ DA +A+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 98
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 140
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS FG I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 141 LEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITV 200
Query: 379 ALAQRKEDRRAR 390
A + ++
Sbjct: 201 KFANNPSQKSSQ 212
>gi|224094731|ref|XP_002310211.1| predicted protein [Populus trichocarpa]
gi|222853114|gb|EEE90661.1| predicted protein [Populus trichocarpa]
Length = 184
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 3/169 (1%)
Query: 27 YVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86
YVG+L+ V++ L++LF Q G VV+V V +D T GYG+V F + ++A A+++LN
Sbjct: 9 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 68
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVAT 145
L GKPIRV + +D GA N+FI NLD +D K LHDTFSAFG I++ K+
Sbjct: 69 MIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMR 127
Query: 146 DL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 128 DPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 176
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + +GFV F + +DA A++ LN
Sbjct: 9 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 68
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 69 MIKLYGKPIRVNKASQ-DKKSLDV----------------GANLFIGNLDPDVDEKLLHD 111
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 112 TFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 171
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 172 KKDTKGER 179
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+L++G+L+ +V + L+D F+ G +V+ ++ RD T S G+G++++ + + + A+E
Sbjct: 94 NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIE 153
Query: 84 MLNFTPLNGKPIRVMYSHR 102
+N L + I V Y+++
Sbjct: 154 AMNGQYLCNRQITVSYAYK 172
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRA 362
Q A Y+ NLD + +E L +LF G + + V +D + + +G GFV F + E+A A
Sbjct: 4 QDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 63
Query: 363 LLEMNGKMVVSKPLYV 378
+ +N + KP+ V
Sbjct: 64 IKVLNMIKLYGKPIRV 79
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 3/169 (1%)
Query: 27 YVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86
YVG+L+ +++ L++LF Q G VV+V V +D T + GYG+V F + ++A A+++LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 87 FTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVAT 145
L GKPIRV + +D GA N+FI NLD +D K L+DTFSAFG I++ K+
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
Query: 146 DLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
D + G S+G+GF+ +D+ E++ AIE +NG L ++Q+ V + +K +
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 20/188 (10%)
Query: 206 YVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALN 264
YV NL +EE L + F + G + + V +D + + +GFV F + +DA A++ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
K K V KA + ++ L++ GANL+I NLD +D++ L
Sbjct: 88 MIKLYGKPIRVNKA-SQDKKSLDV----------------GANLFIGNLDPDVDEKLLYD 130
Query: 325 LFSPFGSI-TSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FG I T+ K+MRDP +G SRG GF+++ + E + A+ MNG+ + ++ + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 383 RKEDRRAR 390
+K+ + R
Sbjct: 191 KKDTKGER 198
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 297 KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFST 355
+ +A++ Q A Y+ NLD I +E L +LF G + + V +D + +G GFV F +
Sbjct: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 356 PEEASRALLEMNGKMVVSKPLYV 378
E+A A+ +N + KP+ V
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRV 98
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 51/310 (16%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+
Sbjct: 38 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 97
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++
Sbjct: 98 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 155
Query: 144 ATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM------------LLNDKQVYVGHFLRK 190
D + G S+G GF++FD A++AI+ LNG N+ V H +
Sbjct: 156 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILS 215
Query: 191 QERDTEINK------------SKFTN-----------------------VYVKNLSESTT 215
Q + + S+F+ ++V NL+
Sbjct: 216 QLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAPDAD 275
Query: 216 EEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274
E L + FG +G +T+ V+RD K K FGFV N D+AA A+ +LNG + D+
Sbjct: 276 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 335
Query: 275 VGKAQKKSER 284
V K+ +
Sbjct: 336 VSFKTSKTHK 345
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 44/313 (14%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
N+ + L + + + L F + G I SCK+ D + GQS GYGFV + + + A+KAI
Sbjct: 39 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 98
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYG-TIT 230
LNG+ L K + V + + I + N+YV L ++ T+++L++ F +YG IT
Sbjct: 99 LNGLRLQTKTIKVSY---ARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIIT 152
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV------GKAQKKSER 284
S +++ G S+ GF+ F+ +A A++ LNG+K + +QK +
Sbjct: 153 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHT 212
Query: 285 ELELKHQ-----FEQNMKEAADKFQ------------------------GANLYIKNLDD 315
L +Q + + + A +F G +++ NL
Sbjct: 213 ILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINFPGHAGTGWCIFVYNLAP 272
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D+ L Q+F PFG++T+ KV+RD + +G GFV + +EA+ A+ +NG + +
Sbjct: 273 DADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 332
Query: 375 PLYVALAQRKEDR 387
L V+ K +
Sbjct: 333 VLQVSFKTSKTHK 345
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVE 261
TN+ V L ++ T+E+L+ FG G I S ++RD G+S +GFVN+ + DA +A+
Sbjct: 38 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 97
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNG + K V A+ S + ANLY+ L ++ ++
Sbjct: 98 TLNGLRLQTKTIKVSYARPSSA------------------SIRDANLYVSGLPKTMTQKE 139
Query: 322 LKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYV 378
L+QLFS +G I + +++ D +G+SRG GF+ F EA A+ +NG+ ++P+ V
Sbjct: 140 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 199
Query: 379 ALA 381
A
Sbjct: 200 KFA 202
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 38 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 97
Query: 365 EMNGKMVVSKPLYVALAQ 382
+NG + +K + V+ A+
Sbjct: 98 TLNGLRLQTKTIKVSYAR 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,884,086,821
Number of Sequences: 23463169
Number of extensions: 281807103
Number of successful extensions: 1061264
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 18081
Number of HSP's successfully gapped in prelim test: 10711
Number of HSP's that attempted gapping in prelim test: 872715
Number of HSP's gapped (non-prelim): 117589
length of query: 454
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 308
effective length of database: 8,933,572,693
effective search space: 2751540389444
effective search space used: 2751540389444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)