BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012896
(454 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/430 (75%), Positives = 378/430 (87%), Gaps = 12/430 (2%)
Query: 1 MAQVQAQGQNVNG------------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMG 48
MAQVQ QGQ NG GGA A QFG TSLYVGDL+ NVTDSQL+D F QMG
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
VV+VRVCRDL TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SGAGNIFIKNLD++IDHKALHDTFS+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKA
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
IEKLNGMLLNDKQVYVG FLR+QERD+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG
Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
ITSAVVM+DG+GKSK FGFVNFEN+DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ ++EQN+KEAADKFQ +NLY+KNLD SI DEKLK++FSPFG++TS KVMRDP+G S+GS
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA 408
GFVAF+TPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRR RLQAQF+Q+RPVAM +V
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVG 420
Query: 409 PRMPMYPPGA 418
PRMP+YPPG
Sbjct: 421 PRMPVYPPGG 430
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 511 bits (1316), Expect = e-144, Method: Compositional matrix adjust.
Identities = 245/378 (64%), Positives = 301/378 (79%), Gaps = 3/378 (0%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQAQFAQMR 399
QRKEDRRA LQA F+Q+R
Sbjct: 408 QRKEDRRAHLQALFSQIR 425
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/402 (58%), Positives = 312/402 (77%), Gaps = 6/402 (1%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 382 QRKEDRRARLQAQFAQMR-PVAMASTVAPR--MPMYPPGAWI 420
QRKE+R+A LQ+ F Q+R P M+ +P +PPG +
Sbjct: 418 QRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM 459
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/384 (60%), Positives = 298/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EIN-KSK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ K+K FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 184 bits (468), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L++ FS G +LS +V D+ +S GY +V F A++A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + + +RD + KS NV++KNL +S + L +F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V+ D +G SK + FV+FE + A +A+E +NG +D++ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN + +DDE LK+LFS FG S KVMRDP+G S+G GFV
Sbjct: 187 --------AKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
++ E+A++A+ EMNGK + K ++V AQ+K +R+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 23/294 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + LYD F+ G ++S +V D + S GY +V+F + A +A
Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKA 154
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
+E +N LN + + V + R + GA N++IKN + +D ++L + FS F
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQF 214
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER
Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Query: 196 EINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ K KF N+Y+KNL ++ +E L+K F +G+ITSA VM + DG+S
Sbjct: 275 EL-KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRS 332
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
K FGFV F + ++A +AV +NG+ K YV AQ+K ER+ L +Q+ Q +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M AA + A+LY+ +L + + L + FSP G + S +V RD I+R G +V
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 304/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/409 (55%), Positives = 303/409 (74%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 185 bits (469), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/413 (55%), Positives = 306/413 (74%), Gaps = 11/413 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG+YG S VM D GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F+PFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM---PMYPPGAWIWLSA 424
PLYVALAQRKE+R+A L Q+ Q MAS P P PP + +++A
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAA 410
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+ F +G+ S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV+F E+A +A+ +MNGK + K ++V AQ+K +R+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 302/409 (73%), Gaps = 7/409 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL + T++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMA---STVAPRMPMYPPGAWI 420
PLYVALAQRKE+R+A L Q+ Q A + P P P G ++
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/423 (53%), Positives = 309/423 (73%), Gaps = 11/423 (2%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM---PMYPPGAWIWLSAAACSWYE 431
PLYVALAQRKE+R+A L Q+ Q MAS P P PP + +++A +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAAIPPAQNR 417
Query: 432 ARW 434
A +
Sbjct: 418 AAY 420
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G S+G GFV+F E+A +A+ EMNGK + K ++V AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ +P+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 286/375 (76%), Gaps = 2/375 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N ++ +AL
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCK
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G +KGYGFV FD+ ESA AIE +NGMLLNDK+VYVGH + ++ER +++ K+
Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL TE++ FG++G ITS +++D + K + FGFVN+ N + A +AV
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K++ K+ YVG+AQKK ERE EL+ ++EQ E +K+QG NL+IKNL D +DDE
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+LK FS FG+ITS K+M D G S+G GFV ++TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 381 AQRKEDRRARLQAQF 395
AQRKE RR++L+AQ
Sbjct: 439 AQRKEVRRSQLEAQI 453
Score = 171 bits (434), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 19/292 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ GT ++++ +L+ + + L+D F+ G+++S +V D + GYG+V+F + + A
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESAN 222
Query: 80 RALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+E +N LN K + V + S R+ + K+ N++IKNLD I + D F
Sbjct: 223 AAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFG 282
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + D N + +G+GFV + N E AQKA+++LN K++YVG +K ER
Sbjct: 283 QFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
Query: 194 DTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E+ NK + N+++KNL + +E L+ F +GTITSA +M D GK
Sbjct: 343 EEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK 402
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
SK FGFV + ++A +AV +N + K YV AQ+K R +L+ Q +
Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQ 454
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 454 bits (1167), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/437 (51%), Positives = 306/437 (70%), Gaps = 18/437 (4%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPP-GAW 419
KPLYVALAQRKE+R+A L Q+ Q MR ++ +S P MP P A+
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAY 420
Query: 420 IWLSAAACSWYEARWGS 436
+ RW S
Sbjct: 421 YGCGPVTPTQPAPRWTS 437
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 166/299 (55%), Gaps = 20/299 (6%)
Query: 106 LRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160
+ SG+G ++++ +L + L++ FS G ILS +V D+ +S GY ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQ 220
A++A++ +N +L + + + +RD + KS N+++KNL +S + L
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALY 116
Query: 221 KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280
+F +G I S V D G S+ FGFV+FE + A +A+ +NG +D++ +VG +
Sbjct: 117 DTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD 340
+ ERE EL A + N+Y+KNL +D++ L+ LFS FG + S KVMRD
Sbjct: 176 RREREAEL----------GARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 341 PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG SR GFV F EEA +A++ MNGK V + LY AQ++ +R+ L+ +F QM+
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/381 (56%), Positives = 294/381 (77%), Gaps = 3/381 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+ TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD TRRSLGY YVNF NA
Sbjct: 40 NADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAA 99
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RA+E LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFG
Sbjct: 100 DGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG 159
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVAT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +
Sbjct: 160 NILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAK 218
Query: 197 INKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
I +++ FTNVY KN+ T+++ +K F ++G ITS V+ RD DGKSK FGFVNFE+ +
Sbjct: 219 IEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHN 278
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+A +AV+ L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+
Sbjct: 279 EAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIP 338
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+S DDE+L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++
Sbjct: 339 ESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNR 398
Query: 375 PLYVALAQRKEDRRARLQAQF 395
PLYVALAQRK+ RR +L+AQ
Sbjct: 399 PLYVALAQRKDVRRQQLEAQI 419
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/380 (57%), Positives = 290/380 (76%), Gaps = 5/380 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+LE V+++ LYD+F+ +G V S+RVCRD T SLGY YVNF + + +A+E
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+T + GKP R+M+S RDPSLRK G+GNI+IKNL AID+K+LH+TFS FGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD NG S+G+GFV F+NE A+ AIE ++GML+ND++VYV + K++R +++ K+KF
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN+ + T++E+ ++ FG+YG ITSAV+ +D +GK + FGFVNFE+ AA+AV+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN +F ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDSIDDEKL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+PFG+ITS KVMRD +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 383 RKEDRRARLQAQFA---QMR 399
RKE RR +L Q QMR
Sbjct: 399 RKEVRRNQLAQQIQARNQMR 418
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ + + +LF + G++ S + +D S + G+G+VNF + AA+A++
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 84 MLNFTPLNGKPIRVMYSH----------------RDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN G+ + V + R L K N+F+KNLD +ID +
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F+ FG I S KV D G S+G+GFV F E A KAI + N ++ K +YV
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 188 LRKQERDTEI 197
RK+ R ++
Sbjct: 398 QRKEVRRNQL 407
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
E +T ++ ++YV L + +E L F G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + +A+E LN K + S+R+ L+ K N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRI----MWSQRDPSLR------------KKGSGNIYI 130
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L + FS FG+I SCKV D +G+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ + +YVAL K+DR+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/424 (52%), Positives = 294/424 (69%), Gaps = 47/424 (11%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 45 SANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF D
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 345 DDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKE 404
Query: 343 -------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR+
Sbjct: 405 SEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 464
Query: 390 RLQA 393
+L+A
Sbjct: 465 QLEA 468
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKN+D + DE+ +++F FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST + A A+ EMN K + + LYV AQ+K +R L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 62/238 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ VTD + +F + G++ S + RD + S G+G+VNFS A A++
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVD 291
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + G+ + R H R+ LRK N+++KNL +D +
Sbjct: 292 EMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + FS FG I S KV D
Sbjct: 352 LRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKK 411
Query: 147 ----LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+ G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 412 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 469
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/427 (53%), Positives = 295/427 (69%), Gaps = 56/427 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQA 393
RR++L+A
Sbjct: 474 RRSQLEA 480
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQLEAS 481
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 52/137 (37%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
A+++ +LY+ +L ++ D +L +LF+ G + S +V RD +
Sbjct: 334 ASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKE 393
Query: 63 -------------------------------------RSLGYGYVNFSNAQEAARALEML 85
+S G+G+V FS+ EA++A+ +
Sbjct: 394 PETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEM 453
Query: 86 NFTPLNGKPIRVMYSHR 102
N ++GKP+ V + R
Sbjct: 454 NQRMVHGKPLYVALAQR 470
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/443 (49%), Positives = 308/443 (69%), Gaps = 22/443 (4%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NATGAG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMY 414
G++V +KPLYVALAQRKE+R+A L Q+ Q MR + A+ P MP
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQP 414
Query: 415 PPGAWIWLSAAACSWYEARWGSH 437
P + + A +W SH
Sbjct: 415 PNRTFYSPNPVAPVRQAPQWTSH 437
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/426 (52%), Positives = 294/426 (69%), Gaps = 49/426 (11%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF D
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 345 DDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKP 404
Query: 343 ---------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ R
Sbjct: 405 KESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 464
Query: 388 RARLQA 393
R++L+A
Sbjct: 465 RSQLEA 470
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKN+D + DE+ +++F FG ITS + R
Sbjct: 220 DRQSKFEEMKANF-------------TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSR 266
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST + A A+ EMN K + + LYV AQ+K +R L+ Q+ R
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 64/240 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ VTD + +F + G++ S + RD + S G+G+VNFS A A++
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVD 291
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + G+ + R H R+ LRK N+++KNL +D +
Sbjct: 292 EMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + FS FG I S KV D
Sbjct: 352 LRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEP 411
Query: 147 ------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
+ G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 412 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 471
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/437 (49%), Positives = 305/437 (69%), Gaps = 17/437 (3%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A ++ SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G+ILSCKV D G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVA---------MASTVAPRMPMYPPGAWI 420
KPLYVALAQRKE+R+A L Q+ Q MR + A+ P MP A+
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFY 420
Query: 421 WLSAAACSWYEARWGSH 437
+ A +W SH
Sbjct: 421 SPNPVAPVRPAPQWASH 437
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/417 (51%), Positives = 300/417 (71%), Gaps = 10/417 (2%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NATGAG-----YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ F P+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSA 424
G++V +KPLYVALAQRKE+R+A L Q+ Q R M + P + + A +LSA
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATMRAMPGPLLGSFQQPANYFLSA 410
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/416 (51%), Positives = 295/416 (70%), Gaps = 8/416 (1%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEARW 434
ALAQRKE+R+A L ++ Q MAS A PP + + + A +
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSGYFMTAVPQTQNHAAYY 417
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 167/298 (56%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 163/289 (56%), Gaps = 16/289 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I S
Sbjct: 63 MNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILS 118
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 119 CKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-- 176
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GFV
Sbjct: 177 ------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFV 228
Query: 352 AFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
AF T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 229 AFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 163/295 (55%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV-MYSHRDPSLRKSGA-----GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V + R ++ G N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/432 (50%), Positives = 291/432 (67%), Gaps = 55/432 (12%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 103
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 104 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 163
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 164 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 223
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ K+ FTN+Y+KN+ TEE+ +K F ++G ITSA + RD +GKS+ FGFVN+ +
Sbjct: 224 FDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHE 283
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ ++ K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 284 SAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 343
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---------------------------- 346
D +DDEKL++LF P+G+ITS KVMRD + R
Sbjct: 344 DDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEE 403
Query: 347 -------------------------GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
G GFV FS+P+EAS+A+ EMN +MV KPLYVALA
Sbjct: 404 KPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 463
Query: 382 QRKEDRRARLQA 393
QRK+ RR++L+A
Sbjct: 464 QRKDVRRSQLEA 475
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 161/293 (54%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N ++A+
Sbjct: 50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 109
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E LN L+ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 110 EDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNI 165
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K +R+
Sbjct: 166 LSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFD 225
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+YIKN+D + +E+ +++F FG ITS + RDP G SR
Sbjct: 226 EMKANF-------------TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSR 272
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV +ST E A A+ EM+ K V ++ LYV AQ+K +R L+ Q+ R
Sbjct: 273 GFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAAR 325
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 70/246 (28%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ +VT+ + +F Q G++ S + RD + S G+G+VN+S + A A++
Sbjct: 232 TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGK-SRGFGFVNYSTHESAQAAVD 290
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
++ + + + R H R+ LRK N+++KNL +D +
Sbjct: 291 EMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 350
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L + F +G I S KV D
Sbjct: 351 LRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDE 410
Query: 147 ------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
L G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R
Sbjct: 411 EKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 470
Query: 195 TEINKS 200
+++ S
Sbjct: 471 SQLEAS 476
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/398 (53%), Positives = 297/398 (74%), Gaps = 5/398 (1%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
E N ++V KPLYVA+AQRK+ RR++L Q QMR
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMR 418
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/382 (55%), Positives = 289/382 (75%), Gaps = 5/382 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAI 125
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILS K
Sbjct: 126 EELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVK 185
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ EE+AQ AIE +NGMLLND++VYVG + K++R++++ K+
Sbjct: 186 VATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKA 245
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+YVKN+ + TE++ ++ F +G ITS + +D +GKSK FGFVNFE + AA+AV
Sbjct: 246 NYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAV 305
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLD+ ID E
Sbjct: 306 EELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSE 365
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV FSTPEEA++A+ EMN +MV KPLYVAL
Sbjct: 366 KLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVAL 425
Query: 381 AQRKEDRRARLQAQFA---QMR 399
AQRK+ RR++L+ Q QMR
Sbjct: 426 AQRKDVRRSQLEQQIQARNQMR 447
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/430 (50%), Positives = 294/430 (68%), Gaps = 53/430 (12%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+ +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 41 STSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 100
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 101 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 160
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 161 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 220
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KNL + +EE+ ++ F ++G ITSA + RD +GKS+ FGFVN+ D
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 340
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D IDDEKL+++F+P+G+ITS KVMRD +
Sbjct: 341 DDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAA 400
Query: 343 -------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
G S+G GFV FS+P+EAS+A+ EMN +M+ KPLYVALAQR
Sbjct: 401 KESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQR 460
Query: 384 KEDRRARLQA 393
K+ RR++L+A
Sbjct: 461 KDVRRSQLEA 470
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N ++A+E
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ K + +RD + K+ NV++KNL + + L +F +G I S
Sbjct: 109 LNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K +R+ E+
Sbjct: 165 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEM 224
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+YIKNLD I +E+ +Q+F FG ITS + RD G SRG
Sbjct: 225 KANF-------------TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGF 271
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV +ST + A A+ EMN K V + LYV AQ+K +R L+ Q+ R
Sbjct: 272 GFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 68/244 (27%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +L+ +++ + +F + G++ S + RD + S G+G+VN+S A A++
Sbjct: 229 TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGK-SRGFGFVNYSTHDSAQAAVD 287
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + G+ + R H R+ LRK N+++KNL ID +
Sbjct: 288 EMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 347
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L + F+ +G I S KV D N
Sbjct: 348 LREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQ 407
Query: 149 ------------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R ++
Sbjct: 408 DKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQ 467
Query: 197 INKS 200
+ S
Sbjct: 468 LEAS 471
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/431 (50%), Positives = 290/431 (67%), Gaps = 53/431 (12%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQA 393
RK+ RR++L+A
Sbjct: 454 RKDVRRSQLEA 464
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 170/321 (52%), Gaps = 21/321 (6%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
+NG +DK+ +VG K +R+ E+K F N+YIKN+D ++
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF-------------TNIYIKNIDPEVE 235
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+ ++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV
Sbjct: 236 DEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Query: 379 ALAQRKEDRRARLQAQFAQMR 399
AQ+K +R L+ Q+ R
Sbjct: 296 GRAQKKHEREEELRKQYEAAR 316
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 68/244 (27%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++Y+ +++ V D + LF + G++ S + RD S +S G+G+VNFS + A A+E
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVE 281
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
+N + + + R H R+ LRK N+++KNL +D
Sbjct: 282 EMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDK 341
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L + F +G I S KV D
Sbjct: 342 LRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEK 401
Query: 149 ------------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R ++
Sbjct: 402 KEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Query: 197 INKS 200
+ S
Sbjct: 462 LEAS 465
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER--ELELKHQFEQNMK 297
GKSK FGFV F + D+A++AV +N + + K YV AQ+K R +LE Q N++
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/373 (54%), Positives = 282/373 (75%), Gaps = 2/373 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD T+ SLGY YVN+++ + +A++
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+ +NG+P R+M+S RDP++RK G+GNIFIKNL AID+KALH+TFS FG +LSCKVA
Sbjct: 111 LNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVA 170
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK--F 202
D NG S+G+GFV F E A+ AIE +NGML+N +VYV + K++R +++ ++K F
Sbjct: 171 LDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANF 230
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TN+YVKN+ TT+E+ ++ F +YG I SA + +D +GK K FGFVNF + + AA+AVE
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LNGK+F + YVG+AQKK ER ELK Q+EQ E KFQG NL+IKNLDDSIDDEKL
Sbjct: 291 LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKL 350
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+P+G+ITS +VMRD G S+G GFV FS+PEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 351 KEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQ 410
Query: 383 RKEDRRARLQAQF 395
RK+ RR++L Q
Sbjct: 411 RKDVRRSQLAQQI 423
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ TD + LF+Q G++VS + +D + + G+G+VNF + AA+A+E
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVE 289
Query: 84 MLNFTPLNGKPIRV----------------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN + + V +R L K N+FIKNLD +ID +
Sbjct: 290 ELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK 349
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F+ +G I S +V D G SKG+GFV F + E A KA+ + N ++ K +YV
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 188 LRKQERDTEI 197
RK R +++
Sbjct: 410 QRKDVRRSQL 419
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364
A+LY+ LD +I + L +FSP G I+S +V RD + S G +V ++ E +A+
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 365 EMNGKMVVSKPLYVALAQR 383
E+N + +P + ++R
Sbjct: 110 ELNYAEINGRPCRIMWSER 128
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/414 (51%), Positives = 292/414 (70%), Gaps = 43/414 (10%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+E+ ++ F ++G +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 342 --SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEA 472
Score = 165 bits (417), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 161/291 (55%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+E+
Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL + + L +F +G I S
Sbjct: 121 LNYTLIKGRPCRI----MWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILS 176
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---EL 288
V +D G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+ E+
Sbjct: 177 CKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEM 236
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
K F N+Y+KN+++ + DE+ ++LF+ FG +TS + RD G SRG
Sbjct: 237 KANF-------------TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGF 283
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV F+T E A++A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 284 GFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAAR 334
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 58/234 (24%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ VTD + +LF + G+V S + RD +S G+G+VNF+ + AA+A++
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHEAAAQAVD 299
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRKS N++IKNL +D
Sbjct: 300 ELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDK 359
Query: 128 LHDTFSAFGNILSCKVATD----------------------------------------- 146
L FS +G I S KV D
Sbjct: 360 LRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDR 419
Query: 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N +++ K +YV RK R +++ S
Sbjct: 420 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEAS 473
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 41/132 (31%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
AN++ +LY+ +L +V D +L +F++ G + S +V RD
Sbjct: 338 ANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKE 397
Query: 63 -------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97
+S G+G+V FSN +A +A+ +N ++GKP+ V
Sbjct: 398 GETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYV 457
Query: 98 MYSHRDPSLRKS 109
+ R +RKS
Sbjct: 458 ALAQRK-DVRKS 468
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 281/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLY+KNLDD DD+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 381 AQRKEDRRARLQAQFAQ 397
AQRK+ RR L++Q AQ
Sbjct: 405 AQRKDVRRQALESQIAQ 421
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 132 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 190
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 191 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 249
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV ++N ESA+KA+++LN +N K++Y G K ER+
Sbjct: 250 FGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 309
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+YVKNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 310 AELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 369
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 370 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 425
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + F+ G + S +V D + +S GY +V + N ++A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL +S + L +F +G I S
Sbjct: 107 LNYSLIKGQSCRI----MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER---ELEL 288
V D +GKS+ F FV++ + A A++A+NG +DK+ YVG K ER EL
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 222
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ QF N+YIKN+D + D + + L PFG S + RD G+S+G
Sbjct: 223 RAQF-------------TNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGF 269
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV + E A +A+ E+N K V K LY AQ K +R A L+ + R
Sbjct: 270 GFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKR 320
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 281/377 (74%), Gaps = 2/377 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLY+KNLDD DD+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 381 AQRKEDRRARLQAQFAQ 397
AQRK+ RR L++Q AQ
Sbjct: 405 AQRKDVRRQALESQIAQ 421
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 21/296 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ ++ + L+D F G ++S +V D +S G+ +V++S + A A
Sbjct: 132 GQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAA 190
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLRKSGA-------GNIFIKNLDKAIDHKALHDTFSA 134
++ +N LN K + V + H R S N++IKN+D + D
Sbjct: 191 IKAVNGMLLNDKKVYVGH-HVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKP 249
Query: 135 FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD 194
FG +S ++ D G SKG+GFV ++N ESA+KA+++LN +N K++Y G K ER+
Sbjct: 250 FGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSERE 309
Query: 195 TEINKSK------------FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242
E+ KS N+YVKNL + ++ L+ F +GTITS+ VMRD G S
Sbjct: 310 AELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVS 369
Query: 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKE 298
+ FGFV + + D+A +AV +NGK K YV AQ+K R L+ Q Q ++
Sbjct: 370 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQ 425
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 21/291 (7%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ LD ++ L + F+ G + S +V D + +S GY +V + N ++A+E
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
LN L+ + + +RD + K+ N+++KNL +S + L +F +G I S
Sbjct: 107 LNYSLIKGQSCRI----MWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSER---ELEL 288
V D +GKS+ F FV++ + A A++A+NG +DK+ YVG K ER EL
Sbjct: 163 CKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEEL 222
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ QF N+YIKN+D + D + + L PFG S + RD G+S+G
Sbjct: 223 RAQF-------------TNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGF 269
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
GFV + E A +A+ E+N K V K LY AQ K +R A L+ + R
Sbjct: 270 GFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKR 320
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/390 (55%), Positives = 282/390 (72%), Gaps = 13/390 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ N +A RAL
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN TP+ GK R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCK
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKS 200
V TD SKG+GFV ++ +ESA KAI K+NGM++N ++V+VG F +ER TE+
Sbjct: 129 VVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEV--- 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNV+ KNLSE + L++ +YG IT+ +M D GKSK FGF NFE+++ A V
Sbjct: 186 KFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVV 245
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E NGK F K Y G+AQKK ERE ELKH FE K+QG NLYIKN+DDSID++
Sbjct: 246 ENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDND 298
Query: 321 KLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL+++FS FG+ITS VM+ D + S+G GFV ++ P+EA+RA+ EMNG+M+ +KPLYVA
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVA 358
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAP 409
LAQRK+ RRA+L+ Q Q + + P
Sbjct: 359 LAQRKDIRRAQLEMQHQQKFKTGIRQQMPP 388
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/418 (50%), Positives = 291/418 (69%), Gaps = 47/418 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +N MLLN+K+VYVG+ + K++R ++ K+
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+S T+E+ + F +YG +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D IDD+
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+FS +G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 343 -------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
G S+G GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+ +L+A
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEA 481
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 159/293 (54%), Gaps = 21/293 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V +++ +KA+
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 124 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 179
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + AA+A++ +N ++K+ YVG K +R+
Sbjct: 180 LSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFE 239
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346
E+K F N+Y+KN+ DE+ + LF+ +G +TS + RD G SR
Sbjct: 240 EMKANF-------------TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSR 286
Query: 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G GFV F+T E A++A+ E+NGK + LYV AQ+K +R L+ + R
Sbjct: 287 GFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAAR 339
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 62/238 (26%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV ++ TD + DLF + G V S + RD S +S G+G+VNF+ + AA+A+E
Sbjct: 246 TNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARD-SEGKSRGFGFVNFTTHECAAKAVE 304
Query: 84 MLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKA 127
LN G+ + R H R+ LRKS N++IKNL ID
Sbjct: 305 ELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDK 364
Query: 128 LHDTFSAFGNILSCKVATDLN--------------------------------------- 148
L FS +G I S KV D
Sbjct: 365 LRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEK 424
Query: 149 ------GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F N + A KA+ ++N ++ K +YV RK R ++ S
Sbjct: 425 KGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEAS 482
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 44/129 (34%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
AN++ +LY+ +L ++ D +L +F++ G + S +V RD T
Sbjct: 343 ANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENK 402
Query: 63 -----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93
+S G+G+V FSN +A +A+ +N + GK
Sbjct: 403 KEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGK 462
Query: 94 PIRVMYSHR 102
P+ V + R
Sbjct: 463 PLYVALAQR 471
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/388 (54%), Positives = 286/388 (73%), Gaps = 5/388 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N ++ + SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++
Sbjct: 28 NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHD 87
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
A A+E LNFTP+ GK R+M+S RDPSLRK GAGNIFIKNL ID+KAL+DTFS FG
Sbjct: 88 AAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG 147
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILS KVATD G+SKG+G+V F+ +ESA +AI+ LNGMLLN +++YVG L K+ER+++
Sbjct: 148 NILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK 207
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN++ TT+++ ++ ++G S V+ R +G++K FGFVNF N +
Sbjct: 208 FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHE 267
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA + VE LN +F + YV +AQKK ER+ ELK Q+E E K+QG NL+IKNLD
Sbjct: 268 DAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLD 327
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
DSIDD+KL++ F+P+G+ITS KVM +G S+G GFV FSTPEEA++A+ E N ++V K
Sbjct: 328 DSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 375 PLYVALAQRKEDRRARLQAQFA---QMR 399
PLYVA+AQRK+ RR++L Q QMR
Sbjct: 388 PLYVAIAQRKDVRRSQLAQQIQARNQMR 415
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGI 344
L L+ + E +E + A+LY+ +LD S+ + L +FSP G+++S +V RD +
Sbjct: 15 LSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKT 74
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
S G +V F+ + A A+ ++N + K + +QR R +
Sbjct: 75 SLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/399 (53%), Positives = 291/399 (72%), Gaps = 5/399 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS FG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ +EEDL+K F YG ITS + +D +GKSK FGFVN+E + A +AV
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 381 AQRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYPP 416
AQRK+ RR++L+ Q QMR A+T PP
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPP 449
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/398 (53%), Positives = 292/398 (73%), Gaps = 4/398 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+ P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + +EE +K F +G ITS + +D DGKSK FGFVNFE+ + A +AV
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPP 416
AQRK+ RR++L+ Q + M + A +P PP
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIPP 448
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/403 (50%), Positives = 291/403 (72%), Gaps = 5/403 (1%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A+ +A+ ++ G+ +Q SLYVG+L+ +VT++ L+++FN +G V SVRVCRD T
Sbjct: 24 AEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAIT 83
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
RRSLGY YVNF N + RALE LN++P+ +P R+M+S RDP+LRK+GAGNI+IKNLD
Sbjct: 84 RRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDP 143
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
AID+KALHDTFSAFG ILSCK+ATD G S+G+GFV +++ ESA+ AI+ +NGMLLNDK+
Sbjct: 144 AIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKK 203
Query: 182 VYVGHFLRKQER--DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
V+VG + K +R E K+ FTNV++KNL TE + ++ ++G +S + + +
Sbjct: 204 VFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDE 263
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GK FGFV+++ D A +A++ L+ +F + + G+A+KK ER EL+ Q+E + E
Sbjct: 264 GKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEK 323
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
+K+QG NLYIKNLDD+IDD+KL+ F+P G+ITS KVM D +G S+G GFV +S+PEEA
Sbjct: 324 LNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEA 383
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMR 399
++A+ EMN ++V KPLYV LAQRK+ RR++LQ Q QMR
Sbjct: 384 TKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMR 426
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/399 (53%), Positives = 291/399 (72%), Gaps = 5/399 (1%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF ++ +A+
Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTF+AFG ILSCK
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G SK +GFV ++ E+A+ AIE +NGMLLND++VYVG + K++R+++ K+
Sbjct: 170 VATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY KN+ +EE+ +K F YG ITS + +D +GKSK FGFVNFEN + A +AV
Sbjct: 230 NFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 290 DELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFGSITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVAL
Sbjct: 350 KLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVAL 409
Query: 381 AQRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYPP 416
AQRK+ RR++L+ Q QMR A+T PP
Sbjct: 410 AQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPP 448
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 297 KEAADKFQ----GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFV 351
+EAAD Q A+LY+ L+ S+++ L ++FSP G + S +V RD + S G +V
Sbjct: 38 EEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYV 97
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+ +A+ ++N ++ +P + +QR R
Sbjct: 98 NFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLR 134
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/379 (54%), Positives = 281/379 (74%), Gaps = 5/379 (1%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +RA+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ ++G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+ FT
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL+ ++ F +G +TS + D +GKS+ FGFVNFEN + A AV+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+ D ++ YVG+AQKK ER ELK +E E K+QG NL++KNLDDSID EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 384 KEDRRARLQAQFA---QMR 399
K+ RR++L+ Q QMR
Sbjct: 420 KDVRRSQLEQQIQARNQMR 438
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/326 (57%), Positives = 250/326 (76%), Gaps = 2/326 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 101
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 102 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 161
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + TEE+ ++ F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 341
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRD 340
D +DDEKL++LF P+G+ITS KVMRD
Sbjct: 342 DDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 204/390 (52%), Gaps = 62/390 (15%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 193
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKN+D+ + + + F F
Sbjct: 194 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKF 253
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A++++N + +++YVG +K ER+
Sbjct: 254 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD
Sbjct: 314 ELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD------ 367
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
N E + DKE +A K++E+E + E+ ++ AD
Sbjct: 368 ----TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEKPADS- 411
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G D + L G S+G GFV FS+P+EAS+A+
Sbjct: 412 -GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDEASKAV 450
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 451 TEMNQRMVNGKPLYVALAQRKDVRRSQLEA 480
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 166/309 (53%), Gaps = 21/309 (6%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKG 153
+ + S P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
Y +V ++N ++A+E LN L+ K + +RD + K+ NV++KNL +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 YVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
+VG K +R+ E+K F N+YIKN+D + +E+ ++LF FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
ITS + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K +R
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 391 LQAQFAQMR 399
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS 200
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R +++ S
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 481
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS 64
A+++ +LYV +L +V D +L +LF G + S +V RD + R+
Sbjct: 327 ASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIERT 373
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRD 372
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 164/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKNLD IDD++ +++F FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQA 393
+ P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR++L+A
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 482
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
A+++ +LYV +L ++ D +L +LF G + S +V RD + R
Sbjct: 332 ASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVER 377
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/321 (57%), Positives = 252/321 (78%), Gaps = 3/321 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ + K+
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN++ T+++ + F +YG +TS+ + RD + GKS+ FGFVNF + +DA++A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN K+F + YVG+AQKK ERE EL+ +E +E A K+QG NLYIKNLDD +DD
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD 340
EKL+QLFS FG ITS KVMRD
Sbjct: 360 EKLRQLFSEFGPITSAKVMRD 380
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 161/294 (54%), Gaps = 22/294 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGIS 345
E+K F N+Y+KN++ + D++ + LF +G +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
RG GFV F++ E+AS+A+ E+N K + LYV AQ+K +R L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 75/344 (21%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ + A++A
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN++ + F
Sbjct: 206 IKHVNGMLLNEK--KVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE 263
Query: 134 AFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+G++ S +A D G+S+G+GFV F + E A KA+++LN + + +YVG +K E
Sbjct: 264 KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHE 323
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-- 238
R+ E+ KS + N+Y+KNL + +E L++ F E+G ITSA VMRD
Sbjct: 324 REEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Query: 239 ----------------------------DGKSK-----------------CFGFVNFENS 253
D K + FGFV F N
Sbjct: 384 EPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANP 443
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
DDA +AV +N + ++K YV AQ+K R K+Q EQ+++
Sbjct: 444 DDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 392
GFV F+ P++A++A+ EMN +MV +KPLYVALAQRK+ R+ +L+
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE 479
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 46/131 (35%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
A+++ +LY+ +L+ V D +L LF++ G + S +V RD T
Sbjct: 340 ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEK 399
Query: 63 -------------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLN 91
+S G+G+V F+N +A +A+ +N +N
Sbjct: 400 NKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVN 459
Query: 92 GKPIRVMYSHR 102
KP+ V + R
Sbjct: 460 NKPLYVALAQR 470
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/318 (56%), Positives = 245/318 (77%), Gaps = 2/318 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++++ +AL
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 107 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER ++ K+
Sbjct: 167 VAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ T+ED ++ F ++G ITSA + RD GKS+ FGFVN+ + AA AV
Sbjct: 227 NFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN +F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL+D +DDE
Sbjct: 287 DHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 321 KLKQLFSPFGSITSCKVM 338
KL+ +F+PFG+ITS KV+
Sbjct: 347 KLRDMFTPFGTITSAKVI 364
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 154/290 (53%), Gaps = 15/290 (5%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS+ G + S +V D + +S GY +V +++ E +KA+
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN ++ K + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 107 EELNYTVIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNI 162
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
S V +D G SK +GFV++E ++ A A++ +NG ++K+ +VG K ER
Sbjct: 163 LSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKER----M 218
Query: 290 HQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349
+FE+ K N+Y+KN+D + DE ++LF G ITS + RD G SRG G
Sbjct: 219 SKFEEM------KANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFG 272
Query: 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
FV + E A+ A+ +N + LYV AQ+K +R L+ Q+ R
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAAR 322
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 162/341 (47%), Gaps = 76/341 (22%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 134 GQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNA 192
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSLR--------KSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN+D + + + F
Sbjct: 193 IKHVNGMLLNEK--KVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFE 250
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
G+I S +A D G+S+G+GFV + E+A A++ LN + +++YVG +K ER
Sbjct: 251 KHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHER 310
Query: 194 DTEINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSA-VVMRD--- 237
+ E+ K SK+ N+Y+KNL++ +E L+ F +GTITSA V++RD
Sbjct: 311 EEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEK 370
Query: 238 --------------------------------------GD-----------GKSKCFGFV 248
GD GKSK FGFV
Sbjct: 371 KDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFV 430
Query: 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK 289
F N D+A +AV +N K + K YV AQ+K R+ +L+
Sbjct: 431 CFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLE 471
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVA 402
G S+G GFV FS P+EA++A+ EMN KM+ KPLYVALAQRK+ R+ +L+A +
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQLR 481
Query: 403 MAST------------VAP-RMP-MYPPGA 418
M +AP + P MYPPGA
Sbjct: 482 MQQQQQQQFGGIPQMFIAPGQQPMMYPPGA 511
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 164/288 (56%), Gaps = 16/288 (5%)
Query: 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEK 171
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 172 LNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ 291
+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 292 FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351
A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GFV
Sbjct: 186 --------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQKK--SERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD GK+ + S+R+ L+ N++IKNLD
Sbjct: 66 KALDTMN---FD---IIKGKSIRLMWSQRDAYLRRS------------GIGNVFIKNLDK 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G S+G FV F A RA+ EMNGK++
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCK 166
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPV 401
++V + ++DR A L+++ ++ V
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNV 192
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 278/419 (66%), Gaps = 7/419 (1%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA V A + + ++ T SLYVGDL +VT+ LYD F + + SVR+C+D S
Sbjct: 1 MATVHAALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDAS 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
+ RSL YGY NF + Q+A A+E N + LNGK IRVM+S R P R++G GN+F+KNL
Sbjct: 61 SGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLP 120
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+++ + L D F FGNI+SCKVAT +G+S+GYGFVQF+ E++A AI+ LN ++ DK
Sbjct: 121 ESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK 180
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
++YVG F++K +R + K+TN+Y+KNL +E+ L++ F E+G I S + +D +
Sbjct: 181 EIYVGKFMKKTDRVKP--EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR 238
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
+ + FVNF+N +DA RA E +NG KF K YVG+AQKK+ERE L+ QF++ +E
Sbjct: 239 LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQK 298
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+ +N+Y+KN++ ++ +E+L++ FS G+ITS K+M D G S+G GFV FSTPEEA
Sbjct: 299 MIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAI 358
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF---AQMRPVAMASTVAP--RMPMY 414
A+ +G+M KPLYVA+AQ+KEDR+ +LQ QF + R + +++V P P+Y
Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLY 417
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,314,145
Number of Sequences: 539616
Number of extensions: 6754438
Number of successful extensions: 28109
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 20945
Number of HSP's gapped (non-prelim): 4105
length of query: 454
length of database: 191,569,459
effective HSP length: 121
effective length of query: 333
effective length of database: 126,275,923
effective search space: 42049882359
effective search space used: 42049882359
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)