Query 012896
Match_columns 454
No_of_seqs 296 out of 3108
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 4E-62 8.7E-67 486.6 45.3 373 24-397 1-377 (562)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.9E-50 6.4E-55 390.6 35.0 349 22-384 1-480 (481)
3 KOG0123 Polyadenylate-binding 100.0 5.1E-48 1.1E-52 354.6 29.8 359 24-397 2-362 (369)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.3E-45 1.1E-49 344.4 27.8 338 22-385 2-350 (352)
5 KOG0117 Heterogeneous nuclear 100.0 1E-42 2.3E-47 307.0 26.9 272 2-392 58-339 (506)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-40 2.7E-45 319.3 26.8 315 3-334 34-370 (578)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 4.6E-40 9.9E-45 315.3 28.8 281 74-386 18-309 (578)
8 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-38 2.4E-43 318.3 28.9 258 113-387 2-264 (562)
9 KOG0145 RNA-binding protein EL 100.0 1.8E-38 4E-43 260.6 23.3 311 20-384 38-358 (360)
10 KOG0127 Nucleolar protein fibr 100.0 4.6E-38 9.9E-43 284.0 26.2 344 23-366 5-516 (678)
11 KOG0148 Apoptosis-promoting RN 100.0 3.7E-38 8E-43 260.6 17.4 235 109-385 4-239 (321)
12 TIGR01622 SF-CC1 splicing fact 100.0 4.8E-36 1E-40 293.0 28.5 342 19-385 85-449 (457)
13 TIGR01645 half-pint poly-U bin 100.0 4.3E-36 9.3E-41 288.2 25.4 172 20-191 104-285 (612)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.7E-36 1.2E-40 290.8 25.1 262 111-384 2-351 (481)
15 KOG0144 RNA-binding protein CU 100.0 5.6E-36 1.2E-40 263.2 18.2 363 19-385 30-505 (510)
16 KOG0127 Nucleolar protein fibr 100.0 3.3E-34 7.1E-39 259.2 22.1 277 112-388 6-382 (678)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.2E-33 4.8E-38 278.2 28.0 256 18-280 170-501 (509)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-33 5.1E-38 277.9 23.8 270 109-385 173-503 (509)
19 KOG0110 RNA-binding protein (R 100.0 2.5E-33 5.3E-38 262.0 17.1 330 20-386 224-695 (725)
20 KOG0148 Apoptosis-promoting RN 100.0 4.2E-32 9E-37 224.8 18.9 221 21-281 4-238 (321)
21 KOG0123 Polyadenylate-binding 100.0 6E-31 1.3E-35 241.9 24.8 297 113-439 3-299 (369)
22 TIGR01659 sex-lethal sex-letha 100.0 1.2E-30 2.6E-35 238.9 21.4 171 18-190 102-275 (346)
23 KOG1190 Polypyrimidine tract-b 100.0 3.6E-29 7.7E-34 219.0 22.6 363 4-383 9-490 (492)
24 TIGR01659 sex-lethal sex-letha 100.0 2.9E-29 6.4E-34 229.8 20.6 171 198-386 103-277 (346)
25 KOG4212 RNA-binding protein hn 100.0 7.1E-28 1.5E-32 212.5 20.2 238 22-272 43-285 (608)
26 TIGR01645 half-pint poly-U bin 100.0 1.2E-27 2.6E-32 230.2 19.1 177 201-384 106-284 (612)
27 KOG0144 RNA-binding protein CU 99.9 9.6E-28 2.1E-32 211.6 12.3 175 200-391 32-213 (510)
28 KOG0147 Transcriptional coacti 99.9 8.6E-28 1.9E-32 219.1 12.0 330 17-383 173-527 (549)
29 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.6E-26 9.9E-31 215.3 20.8 171 21-191 87-350 (352)
30 KOG0124 Polypyrimidine tract-b 99.9 8.8E-26 1.9E-30 194.9 17.2 168 23-190 113-290 (544)
31 KOG0110 RNA-binding protein (R 99.9 1.8E-25 3.8E-30 209.7 19.2 259 19-283 381-695 (725)
32 KOG0145 RNA-binding protein EL 99.9 1.5E-25 3.3E-30 184.7 15.1 168 202-387 41-212 (360)
33 TIGR01622 SF-CC1 splicing fact 99.9 4.3E-25 9.3E-30 215.9 18.1 176 201-383 88-265 (457)
34 KOG1456 Heterogeneous nuclear 99.9 8.7E-23 1.9E-27 177.0 27.6 343 16-373 24-474 (494)
35 KOG0131 Splicing factor 3b, su 99.9 4E-24 8.8E-29 167.3 10.9 172 20-192 6-179 (203)
36 KOG0131 Splicing factor 3b, su 99.9 6.8E-24 1.5E-28 166.0 9.4 172 199-387 6-180 (203)
37 KOG4211 Splicing factor hnRNP- 99.9 6.6E-22 1.4E-26 178.4 20.7 338 20-365 7-491 (510)
38 KOG0109 RNA-binding protein LA 99.9 3.8E-23 8.2E-28 173.6 9.5 146 204-383 4-149 (346)
39 KOG0109 RNA-binding protein LA 99.9 8.5E-23 1.8E-27 171.5 10.4 153 24-195 3-155 (346)
40 KOG0146 RNA-binding protein ET 99.9 8.3E-22 1.8E-26 163.4 13.4 186 201-386 18-367 (371)
41 KOG0117 Heterogeneous nuclear 99.9 1.9E-21 4.1E-26 173.0 15.1 167 20-193 161-334 (506)
42 KOG4212 RNA-binding protein hn 99.9 8.1E-21 1.8E-25 168.1 12.9 249 110-382 43-292 (608)
43 KOG0124 Polypyrimidine tract-b 99.8 2.2E-20 4.9E-25 161.7 11.4 270 112-381 114-532 (544)
44 KOG4211 Splicing factor hnRNP- 99.8 3.1E-18 6.7E-23 154.9 20.7 265 111-381 10-355 (510)
45 KOG0105 Alternative splicing f 99.8 4.6E-19 9.9E-24 139.1 12.9 149 20-177 3-175 (241)
46 KOG1190 Polypyrimidine tract-b 99.8 6E-18 1.3E-22 149.0 21.2 250 20-280 147-490 (492)
47 KOG4205 RNA-binding protein mu 99.8 7.3E-19 1.6E-23 156.0 10.5 169 22-192 5-178 (311)
48 KOG4206 Spliceosomal protein s 99.8 9.8E-18 2.1E-22 137.5 15.2 158 21-185 7-217 (221)
49 KOG0147 Transcriptional coacti 99.8 6.2E-19 1.4E-23 161.6 7.7 176 202-382 179-356 (549)
50 KOG0146 RNA-binding protein ET 99.8 5.5E-18 1.2E-22 140.9 12.0 169 21-190 17-365 (371)
51 KOG4205 RNA-binding protein mu 99.8 2E-18 4.3E-23 153.3 8.0 174 201-388 5-180 (311)
52 PLN03134 glycine-rich RNA-bind 99.7 1.6E-17 3.5E-22 133.1 10.4 81 304-384 33-114 (144)
53 KOG0120 Splicing factor U2AF, 99.7 5.2E-17 1.1E-21 151.3 15.1 259 15-280 167-491 (500)
54 KOG1456 Heterogeneous nuclear 99.7 1.9E-15 4.2E-20 131.7 23.2 244 18-271 115-475 (494)
55 KOG1365 RNA-binding protein Fu 99.7 5.9E-17 1.3E-21 141.6 13.7 288 18-387 55-365 (508)
56 PLN03134 glycine-rich RNA-bind 99.7 8.5E-17 1.8E-21 128.9 12.3 85 20-104 31-115 (144)
57 KOG0120 Splicing factor U2AF, 99.7 7.7E-17 1.7E-21 150.2 11.3 270 110-385 174-493 (500)
58 KOG4206 Spliceosomal protein s 99.7 3.3E-16 7.2E-21 128.6 12.8 177 200-382 7-220 (221)
59 KOG1457 RNA binding protein (c 99.7 6.9E-16 1.5E-20 125.2 12.7 155 21-178 32-274 (284)
60 PF00076 RRM_1: RNA recognitio 99.6 7.3E-16 1.6E-20 108.9 8.3 70 308-377 1-70 (70)
61 KOG0105 Alternative splicing f 99.6 5.8E-15 1.3E-19 116.2 11.3 169 202-379 6-185 (241)
62 PF00076 RRM_1: RNA recognitio 99.6 2.4E-15 5.1E-20 106.2 8.2 70 26-96 1-70 (70)
63 KOG0122 Translation initiation 99.6 2.7E-15 5.9E-20 123.7 8.5 81 304-384 188-269 (270)
64 PF14259 RRM_6: RNA recognitio 99.6 8.5E-15 1.8E-19 103.2 9.1 70 308-377 1-70 (70)
65 KOG0122 Translation initiation 99.6 8E-15 1.7E-19 121.0 10.1 85 19-103 185-269 (270)
66 KOG1548 Transcription elongati 99.6 1E-13 2.2E-18 120.3 16.8 164 20-187 131-349 (382)
67 KOG0125 Ataxin 2-binding prote 99.6 2E-15 4.4E-20 129.6 6.1 79 304-383 95-173 (376)
68 KOG4207 Predicted splicing fac 99.6 2.2E-15 4.7E-20 120.9 5.3 79 304-382 12-91 (256)
69 PF14259 RRM_6: RNA recognitio 99.5 2.4E-14 5.3E-19 100.8 8.0 70 26-96 1-70 (70)
70 KOG0107 Alternative splicing f 99.5 1.5E-14 3.2E-19 113.2 7.0 78 304-385 9-86 (195)
71 KOG0106 Alternative splicing f 99.5 1.2E-14 2.7E-19 120.9 6.8 147 24-185 2-166 (216)
72 PLN03120 nucleic acid binding 99.5 3.4E-14 7.3E-19 121.6 9.5 75 305-382 4-78 (260)
73 KOG0114 Predicted RNA-binding 99.5 5.7E-14 1.2E-18 99.6 8.6 82 19-103 14-95 (124)
74 KOG0107 Alternative splicing f 99.5 2.8E-14 6.1E-19 111.7 7.5 79 21-104 8-86 (195)
75 KOG0149 Predicted RNA-binding 99.5 8.2E-15 1.8E-19 120.5 4.8 78 305-383 12-90 (247)
76 KOG0121 Nuclear cap-binding pr 99.5 2.8E-14 6E-19 105.4 6.9 84 20-103 33-116 (153)
77 KOG4307 RNA binding protein RB 99.5 2.7E-13 5.8E-18 127.6 14.2 173 13-187 301-511 (944)
78 KOG4207 Predicted splicing fac 99.5 4.3E-14 9.3E-19 113.5 7.7 87 17-103 7-93 (256)
79 KOG1457 RNA binding protein (c 99.5 1.9E-13 4.1E-18 111.1 10.6 171 199-372 31-274 (284)
80 PLN03120 nucleic acid binding 99.5 1.4E-13 2.9E-18 117.9 9.8 76 23-102 4-79 (260)
81 KOG0114 Predicted RNA-binding 99.5 3E-13 6.5E-18 96.0 9.7 80 305-386 18-97 (124)
82 KOG0106 Alternative splicing f 99.5 1.9E-14 4.1E-19 119.8 4.1 165 204-382 3-169 (216)
83 KOG0149 Predicted RNA-binding 99.5 9.5E-14 2.1E-18 114.4 7.6 81 21-102 10-90 (247)
84 KOG0111 Cyclophilin-type pepti 99.5 3.2E-14 6.9E-19 115.2 4.2 83 304-386 9-92 (298)
85 KOG1548 Transcription elongati 99.5 2.1E-12 4.5E-17 112.2 14.4 180 200-382 132-350 (382)
86 PLN03213 repressor of silencin 99.4 3.9E-13 8.4E-18 121.8 9.9 81 303-386 8-90 (759)
87 KOG0126 Predicted RNA-binding 99.4 1.9E-14 4.1E-19 113.1 1.0 77 305-381 35-112 (219)
88 PLN03121 nucleic acid binding 99.4 5.1E-13 1.1E-17 112.3 9.5 76 304-382 4-79 (243)
89 smart00362 RRM_2 RNA recogniti 99.4 5.7E-13 1.2E-17 94.4 8.2 72 307-379 1-72 (72)
90 KOG0121 Nuclear cap-binding pr 99.4 3.5E-13 7.5E-18 99.7 6.6 81 303-383 34-115 (153)
91 KOG0113 U1 small nuclear ribon 99.4 5.6E-13 1.2E-17 113.4 8.4 82 303-384 99-181 (335)
92 PLN03121 nucleic acid binding 99.4 1.1E-12 2.3E-17 110.4 9.7 78 21-102 3-80 (243)
93 KOG0126 Predicted RNA-binding 99.4 2.9E-14 6.4E-19 112.0 -0.2 80 20-99 32-111 (219)
94 smart00362 RRM_2 RNA recogniti 99.4 1.6E-12 3.4E-17 92.1 8.5 71 25-97 1-71 (72)
95 KOG0125 Ataxin 2-binding prote 99.4 1.1E-12 2.3E-17 113.1 8.8 83 19-103 92-174 (376)
96 COG0724 RNA-binding proteins ( 99.4 3.9E-12 8.5E-17 117.2 13.3 125 23-147 115-261 (306)
97 KOG0113 U1 small nuclear ribon 99.4 2E-12 4.4E-17 110.0 9.5 83 18-100 96-178 (335)
98 smart00360 RRM RNA recognition 99.4 2.7E-12 5.8E-17 90.6 8.4 70 28-97 1-70 (71)
99 KOG0128 RNA-binding protein SA 99.4 2.9E-15 6.3E-20 144.4 -9.4 321 24-383 480-814 (881)
100 PF13893 RRM_5: RNA recognitio 99.4 2.4E-12 5.2E-17 85.8 7.0 56 322-381 1-56 (56)
101 cd00590 RRM RRM (RNA recogniti 99.4 4.8E-12 1E-16 90.1 9.0 74 307-380 1-74 (74)
102 smart00360 RRM RNA recognition 99.4 2.5E-12 5.4E-17 90.7 7.2 70 310-379 1-71 (71)
103 KOG0130 RNA-binding protein RB 99.4 1.5E-12 3.3E-17 97.2 6.0 80 304-383 71-151 (170)
104 PLN03213 repressor of silencin 99.3 3.6E-12 7.7E-17 115.7 9.3 79 20-102 7-87 (759)
105 KOG1365 RNA-binding protein Fu 99.3 8.3E-12 1.8E-16 109.8 10.4 162 23-186 161-358 (508)
106 KOG0130 RNA-binding protein RB 99.3 3.3E-12 7.1E-17 95.4 6.7 88 16-103 65-152 (170)
107 cd00590 RRM RRM (RNA recogniti 99.3 1.3E-11 2.8E-16 87.9 9.2 74 25-99 1-74 (74)
108 KOG0108 mRNA cleavage and poly 99.3 6.3E-12 1.4E-16 117.2 8.3 83 306-388 19-102 (435)
109 smart00361 RRM_1 RNA recogniti 99.3 1.4E-11 3.1E-16 86.0 6.8 60 319-378 2-69 (70)
110 KOG0108 mRNA cleavage and poly 99.2 2.5E-11 5.4E-16 113.3 9.4 82 24-105 19-100 (435)
111 KOG0111 Cyclophilin-type pepti 99.2 6.3E-12 1.4E-16 102.0 4.0 86 21-106 8-93 (298)
112 PF13893 RRM_5: RNA recognitio 99.2 3.4E-11 7.4E-16 80.2 6.6 56 40-100 1-56 (56)
113 KOG0129 Predicted RNA-binding 99.2 2.5E-10 5.5E-15 105.0 13.7 157 15-171 251-432 (520)
114 KOG4660 Protein Mei2, essentia 99.2 4.5E-11 9.7E-16 110.9 7.4 153 18-181 70-241 (549)
115 COG0724 RNA-binding proteins ( 99.2 2.2E-10 4.8E-15 105.4 11.1 164 202-365 115-286 (306)
116 smart00361 RRM_1 RNA recogniti 99.1 1.6E-10 3.4E-15 80.7 7.2 61 37-97 2-69 (70)
117 KOG4307 RNA binding protein RB 99.1 2.9E-09 6.2E-14 101.1 14.2 254 114-371 314-623 (944)
118 KOG4454 RNA binding protein (R 99.1 6.2E-11 1.3E-15 96.5 2.5 154 18-184 4-157 (267)
119 KOG0128 RNA-binding protein SA 99.1 3.3E-11 7.2E-16 116.9 0.8 236 21-280 569-814 (881)
120 KOG4208 Nucleolar RNA-binding 99.1 4E-10 8.7E-15 91.4 6.8 80 305-384 49-130 (214)
121 KOG0153 Predicted RNA-binding 99.0 4.4E-10 9.5E-15 98.1 6.9 76 303-383 226-302 (377)
122 KOG0415 Predicted peptidyl pro 99.0 3.8E-10 8.2E-15 98.5 6.3 87 300-386 234-321 (479)
123 KOG0132 RNA polymerase II C-te 99.0 6.1E-10 1.3E-14 106.9 6.4 77 304-385 420-496 (894)
124 KOG4208 Nucleolar RNA-binding 99.0 1.9E-09 4.2E-14 87.5 7.8 87 17-103 43-130 (214)
125 KOG0415 Predicted peptidyl pro 98.9 1.4E-09 3.1E-14 95.0 6.3 88 15-102 231-318 (479)
126 KOG0129 Predicted RNA-binding 98.9 4.7E-09 1E-13 96.8 9.4 163 200-365 257-432 (520)
127 KOG0226 RNA-binding proteins [ 98.9 8.3E-10 1.8E-14 92.2 4.1 169 204-384 98-270 (290)
128 KOG4454 RNA binding protein (R 98.9 3.4E-10 7.3E-15 92.2 1.6 140 201-372 8-151 (267)
129 KOG0132 RNA polymerase II C-te 98.9 3.1E-09 6.8E-14 102.2 7.8 106 21-132 419-527 (894)
130 KOG0153 Predicted RNA-binding 98.9 3.5E-09 7.6E-14 92.6 7.2 82 15-102 220-302 (377)
131 KOG0112 Large RNA-binding prot 98.9 8.6E-10 1.9E-14 107.7 3.9 162 202-388 372-535 (975)
132 KOG0533 RRM motif-containing p 98.8 1.5E-08 3.2E-13 87.0 7.3 81 305-385 83-163 (243)
133 PF04059 RRM_2: RNA recognitio 98.8 6.9E-08 1.5E-12 70.5 8.8 78 24-101 2-85 (97)
134 KOG0112 Large RNA-binding prot 98.8 5.1E-09 1.1E-13 102.5 3.6 157 19-185 368-526 (975)
135 KOG0226 RNA-binding proteins [ 98.8 1.5E-08 3.2E-13 84.9 5.8 154 129-282 117-271 (290)
136 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.4E-12 69.4 8.3 81 305-385 1-88 (97)
137 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.9E-08 6.4E-13 92.2 6.3 80 304-383 404-484 (940)
138 KOG4660 Protein Mei2, essentia 98.7 1.1E-08 2.4E-13 95.3 3.1 70 304-377 74-143 (549)
139 KOG0533 RRM motif-containing p 98.7 1.1E-07 2.5E-12 81.6 8.8 85 18-103 78-162 (243)
140 KOG0151 Predicted splicing reg 98.7 5.8E-08 1.2E-12 92.7 7.4 84 302-385 171-258 (877)
141 KOG4661 Hsp27-ERE-TATA-binding 98.6 9.7E-08 2.1E-12 88.8 8.3 85 20-104 402-486 (940)
142 PF11608 Limkain-b1: Limkain b 98.6 1.7E-07 3.7E-12 64.6 7.4 70 24-103 3-77 (90)
143 KOG4210 Nuclear localization s 98.6 2.5E-08 5.4E-13 89.2 3.4 176 202-386 88-266 (285)
144 KOG0116 RasGAP SH3 binding pro 98.6 1.7E-07 3.8E-12 87.3 7.8 80 21-101 286-365 (419)
145 KOG4209 Splicing factor RNPS1, 98.5 4.3E-07 9.3E-12 78.4 7.3 82 302-384 98-180 (231)
146 KOG4210 Nuclear localization s 98.5 2.4E-07 5.1E-12 83.0 5.5 169 21-190 86-264 (285)
147 KOG0151 Predicted splicing reg 98.4 6.9E-07 1.5E-11 85.6 7.5 84 19-102 170-256 (877)
148 KOG4676 Splicing factor, argin 98.4 3.2E-07 6.8E-12 81.7 3.7 215 111-384 7-226 (479)
149 KOG0116 RasGAP SH3 binding pro 98.4 7E-07 1.5E-11 83.3 6.1 81 304-385 287-368 (419)
150 KOG4209 Splicing factor RNPS1, 98.3 7.7E-07 1.7E-11 76.9 5.8 85 18-103 96-180 (231)
151 PF11608 Limkain-b1: Limkain b 98.3 3.6E-06 7.7E-11 58.2 6.5 69 306-383 3-76 (90)
152 KOG4676 Splicing factor, argin 98.1 1.6E-06 3.5E-11 77.3 2.2 149 25-178 9-214 (479)
153 KOG2193 IGF-II mRNA-binding pr 98.1 8.7E-07 1.9E-11 79.7 0.5 154 203-384 2-157 (584)
154 PF08777 RRM_3: RNA binding mo 98.0 1.2E-05 2.6E-10 60.4 6.0 60 23-88 1-60 (105)
155 PF08777 RRM_3: RNA binding mo 98.0 2.1E-05 4.5E-10 59.2 7.0 76 306-386 2-82 (105)
156 KOG1995 Conserved Zn-finger pr 97.8 1.4E-05 3E-10 71.2 3.4 82 304-385 65-155 (351)
157 KOG2193 IGF-II mRNA-binding pr 97.8 2.4E-06 5.3E-11 76.9 -1.5 154 112-281 2-157 (584)
158 KOG1995 Conserved Zn-finger pr 97.8 3.9E-05 8.5E-10 68.4 5.6 84 20-103 63-154 (351)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.1E-05 1.8E-09 48.1 4.9 53 23-82 1-53 (53)
160 COG5175 MOT2 Transcriptional r 97.7 8.3E-05 1.8E-09 65.3 6.2 76 307-382 116-201 (480)
161 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.7E-05 2.1E-09 47.7 4.5 52 306-363 2-53 (53)
162 KOG2314 Translation initiation 97.6 0.00014 3E-09 68.5 7.1 77 305-381 58-141 (698)
163 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00042 9.2E-09 51.2 7.3 77 305-383 6-91 (100)
164 KOG0115 RNA-binding protein p5 97.4 0.0004 8.7E-09 59.0 6.3 99 255-378 6-108 (275)
165 COG5175 MOT2 Transcriptional r 97.4 0.00041 8.9E-09 61.1 6.5 82 21-102 112-202 (480)
166 KOG4849 mRNA cleavage factor I 97.4 0.00028 6E-09 62.4 5.5 74 306-379 81-157 (498)
167 KOG3152 TBP-binding protein, a 97.4 0.00014 3.1E-09 61.6 3.2 74 22-95 73-158 (278)
168 KOG1855 Predicted RNA-binding 97.3 0.00021 4.5E-09 65.1 4.1 69 19-87 227-308 (484)
169 PF08952 DUF1866: Domain of un 97.3 0.0011 2.3E-08 52.1 7.4 77 302-386 24-109 (146)
170 KOG4849 mRNA cleavage factor I 97.3 0.00028 6E-09 62.4 4.7 77 21-97 78-156 (498)
171 KOG0115 RNA-binding protein p5 97.3 0.00049 1.1E-08 58.5 5.8 89 75-172 4-92 (275)
172 KOG2202 U2 snRNP splicing fact 97.3 0.00011 2.3E-09 62.6 1.4 64 320-383 83-147 (260)
173 KOG3152 TBP-binding protein, a 97.1 0.00024 5.2E-09 60.3 2.2 70 306-375 75-157 (278)
174 KOG1855 Predicted RNA-binding 97.1 0.00037 8E-09 63.5 2.9 66 304-369 230-309 (484)
175 KOG1996 mRNA splicing factor [ 97.0 0.0015 3.2E-08 56.5 5.9 67 319-385 300-368 (378)
176 PF08675 RNA_bind: RNA binding 97.0 0.0047 1E-07 43.1 7.2 58 20-86 6-63 (87)
177 KOG2314 Translation initiation 97.0 0.0025 5.3E-08 60.4 7.6 79 20-99 55-140 (698)
178 KOG1996 mRNA splicing factor [ 97.0 0.0021 4.6E-08 55.6 6.3 66 38-103 301-367 (378)
179 PF08952 DUF1866: Domain of un 97.0 0.0021 4.6E-08 50.4 5.7 74 21-103 25-107 (146)
180 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0021 4.5E-08 47.5 5.3 71 21-96 4-84 (100)
181 KOG2416 Acinus (induces apopto 96.9 0.0016 3.6E-08 61.9 5.5 80 303-387 442-525 (718)
182 PF15023 DUF4523: Protein of u 96.8 0.0082 1.8E-07 46.4 7.9 80 15-102 78-161 (166)
183 PF15023 DUF4523: Protein of u 96.6 0.0062 1.3E-07 47.0 6.0 74 302-382 83-160 (166)
184 PF07576 BRAP2: BRCA1-associat 96.6 0.035 7.6E-07 42.0 9.6 73 18-92 8-81 (110)
185 PF10309 DUF2414: Protein of u 96.5 0.013 2.8E-07 38.8 6.2 54 306-366 6-62 (62)
186 KOG2202 U2 snRNP splicing fact 96.4 0.0018 4E-08 55.3 1.8 62 40-102 85-147 (260)
187 PF04847 Calcipressin: Calcipr 96.3 0.0052 1.1E-07 51.3 4.2 63 318-385 8-72 (184)
188 PF10309 DUF2414: Protein of u 96.3 0.027 5.9E-07 37.3 6.6 54 23-85 5-62 (62)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0052 1.1E-07 51.2 3.8 73 20-92 4-82 (176)
190 PF08675 RNA_bind: RNA binding 96.2 0.022 4.7E-07 39.8 5.9 56 305-367 8-63 (87)
191 PF07576 BRAP2: BRCA1-associat 95.6 0.1 2.3E-06 39.4 8.2 75 306-381 13-92 (110)
192 PF10567 Nab6_mRNP_bdg: RNA-re 95.6 0.3 6.5E-06 43.0 11.7 156 17-173 9-212 (309)
193 KOG2135 Proteins containing th 95.5 0.01 2.3E-07 55.2 2.8 82 16-104 365-447 (526)
194 KOG2416 Acinus (induces apopto 95.4 0.013 2.8E-07 56.1 3.2 82 15-102 436-521 (718)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.078 1.7E-06 44.2 7.0 78 305-382 7-96 (176)
196 KOG2135 Proteins containing th 95.0 0.011 2.5E-07 54.9 1.5 73 306-384 373-446 (526)
197 KOG2068 MOT2 transcription fac 94.9 0.012 2.7E-07 52.6 1.5 76 307-382 79-161 (327)
198 KOG2591 c-Mpl binding protein, 94.8 0.079 1.7E-06 50.5 6.4 69 305-379 175-247 (684)
199 PF03880 DbpA: DbpA RNA bindin 94.4 0.14 3E-06 35.8 5.6 59 315-381 11-74 (74)
200 KOG4574 RNA-binding protein (c 94.2 0.027 5.8E-07 56.3 2.1 74 308-386 301-376 (1007)
201 KOG0804 Cytoplasmic Zn-finger 94.1 0.19 4.1E-06 46.9 7.1 69 21-91 72-141 (493)
202 PF11767 SET_assoc: Histone ly 93.8 0.25 5.5E-06 33.3 5.6 55 316-378 11-65 (66)
203 PF10567 Nab6_mRNP_bdg: RNA-re 93.7 2 4.3E-05 38.1 12.3 168 201-369 14-214 (309)
204 PF04847 Calcipressin: Calcipr 93.7 0.18 3.8E-06 42.2 5.7 62 36-103 8-71 (184)
205 KOG2068 MOT2 transcription fac 93.6 0.046 1E-06 49.0 2.3 83 21-103 75-163 (327)
206 KOG0804 Cytoplasmic Zn-finger 93.4 0.24 5.1E-06 46.3 6.4 67 305-372 74-141 (493)
207 KOG2591 c-Mpl binding protein, 93.2 0.26 5.5E-06 47.3 6.5 73 18-97 170-246 (684)
208 PF11767 SET_assoc: Histone ly 93.2 0.32 6.8E-06 32.9 5.2 55 34-97 11-65 (66)
209 KOG4574 RNA-binding protein (c 93.0 0.073 1.6E-06 53.4 2.8 76 25-106 300-377 (1007)
210 KOG4285 Mitotic phosphoprotein 92.0 0.42 9.1E-06 42.2 5.8 72 307-385 199-271 (350)
211 KOG4285 Mitotic phosphoprotein 91.2 1.1 2.3E-05 39.7 7.5 64 23-94 197-260 (350)
212 PF07292 NID: Nmi/IFP 35 domai 90.9 0.16 3.4E-06 36.5 1.9 66 68-133 1-74 (88)
213 PF03880 DbpA: DbpA RNA bindin 90.1 1.5 3.2E-05 30.6 6.2 57 34-99 12-73 (74)
214 KOG2318 Uncharacterized conser 88.3 3.3 7.3E-05 40.3 8.9 126 19-184 170-300 (650)
215 KOG2253 U1 snRNP complex, subu 87.4 0.29 6.4E-06 48.0 1.5 70 303-380 38-107 (668)
216 KOG4019 Calcineurin-mediated s 86.0 0.47 1E-05 38.7 1.7 76 306-386 11-92 (193)
217 PF07292 NID: Nmi/IFP 35 domai 84.8 2 4.2E-05 31.0 4.2 70 155-224 1-74 (88)
218 KOG2318 Uncharacterized conser 83.3 4 8.6E-05 39.8 6.8 79 303-381 172-305 (650)
219 PF14111 DUF4283: Domain of un 82.1 1.6 3.4E-05 35.5 3.4 115 26-146 18-140 (153)
220 KOG2253 U1 snRNP complex, subu 78.2 2.7 5.8E-05 41.7 3.9 71 20-99 37-107 (668)
221 KOG4410 5-formyltetrahydrofola 77.5 5.2 0.00011 35.2 5.0 49 24-77 331-379 (396)
222 KOG1295 Nonsense-mediated deca 68.8 5.3 0.00011 37.0 3.3 70 22-91 6-78 (376)
223 PRK14548 50S ribosomal protein 64.0 21 0.00046 25.5 4.9 57 308-366 23-81 (84)
224 TIGR03636 L23_arch archaeal ri 62.9 25 0.00053 24.7 5.0 58 307-366 15-74 (77)
225 PRK14548 50S ribosomal protein 62.1 38 0.00083 24.2 5.9 56 27-85 24-81 (84)
226 KOG2295 C2H2 Zn-finger protein 60.9 1.5 3.3E-05 42.3 -1.7 75 20-94 228-302 (648)
227 TIGR03636 L23_arch archaeal ri 60.6 46 0.001 23.4 6.0 57 26-85 16-74 (77)
228 PF15513 DUF4651: Domain of un 60.1 15 0.00033 24.3 3.3 21 320-340 9-29 (62)
229 PF03468 XS: XS domain; Inter 57.6 13 0.00028 28.5 3.2 56 25-83 10-75 (116)
230 KOG4213 RNA-binding protein La 52.3 13 0.00027 30.6 2.4 72 23-99 111-183 (205)
231 PF15513 DUF4651: Domain of un 50.2 39 0.00083 22.5 3.9 22 217-238 9-30 (62)
232 PF03468 XS: XS domain; Inter 48.5 34 0.00074 26.3 4.2 50 113-164 10-68 (116)
233 PF07530 PRE_C2HC: Associated 47.6 33 0.00072 23.4 3.6 62 38-102 2-64 (68)
234 KOG4019 Calcineurin-mediated s 44.1 16 0.00036 30.1 1.9 74 24-103 11-90 (193)
235 PF14111 DUF4283: Domain of un 43.0 16 0.00035 29.5 1.8 84 152-236 55-139 (153)
236 KOG4410 5-formyltetrahydrofola 41.0 26 0.00057 31.0 2.8 48 305-357 330-378 (396)
237 KOG4483 Uncharacterized conser 39.8 1.4E+02 0.003 28.2 7.2 56 109-170 389-445 (528)
238 TIGR02542 B_forsyth_147 Bacter 39.8 1E+02 0.0023 23.3 5.3 26 30-57 10-35 (145)
239 KOG4008 rRNA processing protei 39.7 24 0.00052 30.4 2.3 36 18-53 35-70 (261)
240 KOG4483 Uncharacterized conser 39.1 59 0.0013 30.5 4.8 56 22-84 390-446 (528)
241 KOG4365 Uncharacterized conser 38.2 5.5 0.00012 37.4 -1.8 79 307-386 5-84 (572)
242 KOG2891 Surface glycoprotein [ 38.0 28 0.0006 30.7 2.5 81 303-383 147-267 (445)
243 smart00596 PRE_C2HC PRE_C2HC d 37.3 55 0.0012 22.3 3.2 61 38-101 2-63 (69)
244 KOG2295 C2H2 Zn-finger protein 36.7 5.1 0.00011 38.9 -2.3 69 304-372 230-299 (648)
245 PTZ00191 60S ribosomal protein 34.9 1.1E+02 0.0023 24.6 5.0 56 308-365 84-141 (145)
246 KOG1295 Nonsense-mediated deca 34.0 57 0.0012 30.5 3.9 68 305-372 7-78 (376)
247 COG5193 LHP1 La protein, small 33.8 20 0.00043 33.6 1.0 62 23-84 174-245 (438)
248 COG5638 Uncharacterized conser 31.9 1.2E+02 0.0025 28.7 5.4 80 301-380 142-294 (622)
249 PRK10629 EnvZ/OmpR regulon mod 31.7 2.5E+02 0.0055 22.0 7.6 69 21-97 33-105 (127)
250 PF02714 DUF221: Domain of unk 30.9 74 0.0016 29.5 4.4 35 246-282 1-35 (325)
251 COG5507 Uncharacterized conser 30.6 73 0.0016 23.2 3.2 20 66-85 67-86 (117)
252 PF00403 HMA: Heavy-metal-asso 28.3 1.7E+02 0.0037 18.9 5.4 54 307-365 1-58 (62)
253 PF11823 DUF3343: Protein of u 27.0 65 0.0014 22.2 2.5 22 348-369 3-24 (73)
254 PF02714 DUF221: Domain of unk 24.7 1.2E+02 0.0026 28.2 4.6 33 68-102 1-33 (325)
255 COG0445 GidA Flavin-dependent 23.8 2.6E+02 0.0056 28.2 6.5 80 66-145 237-335 (621)
256 PF08734 GYD: GYD domain; Int 23.7 2.9E+02 0.0063 20.0 5.5 45 38-86 23-68 (91)
257 PF00585 Thr_dehydrat_C: C-ter 22.3 3.1E+02 0.0068 19.8 5.5 61 26-88 12-74 (91)
258 PRK10629 EnvZ/OmpR regulon mod 22.2 3.9E+02 0.0084 20.9 7.0 71 305-382 35-109 (127)
259 cd04904 ACT_AAAH ACT domain of 21.9 2.5E+02 0.0053 19.2 4.7 50 319-368 14-65 (74)
260 KOG1924 RhoA GTPase effector D 21.1 96 0.0021 32.2 3.2 15 158-172 205-219 (1102)
261 PF14893 PNMA: PNMA 20.8 68 0.0015 29.9 2.0 73 23-101 18-95 (331)
262 PF11411 DNA_ligase_IV: DNA li 20.7 80 0.0017 18.4 1.5 16 33-48 19-34 (36)
263 PF03439 Spt5-NGN: Early trans 20.4 1.7E+02 0.0036 20.8 3.6 36 331-370 33-68 (84)
264 COG5193 LHP1 La protein, small 20.3 52 0.0011 30.9 1.2 58 307-364 176-244 (438)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4e-62 Score=486.59 Aligned_cols=373 Identities=64% Similarity=1.037 Sum_probs=338.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
.+|||+|||+++||++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeE
Q 012896 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (454)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~ 183 (454)
+..+.....+|||+|||.++++++|+++|+.||.|.+|++..+.++.++|||||+|.+.++|..|++.+++..+.++.+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 77777788899999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHH
Q 012896 184 VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263 (454)
Q Consensus 184 v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 263 (454)
+.....+.... .......++|+|+||+.++++++|+++|+.||.|.++.+..+.++.++|+|||+|.+.++|.+|+..+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 98766554442 22344567899999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCCCC----CceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEee
Q 012896 264 NGKKFD----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339 (454)
Q Consensus 264 ~~~~~~----g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~ 339 (454)
++..+. ++.+.+.++....+......................++|||+||+..+++++|+++|++||.|.+|+++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999988877765555554444444444456678899999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchHHHHHHHHHHHhc
Q 012896 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397 (454)
Q Consensus 340 ~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 397 (454)
+.+|.++|||||+|.+.++|.+|+..|||..++|++|.|.++..+..+......+..+
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q 377 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQ 377 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888777665554443
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.9e-50 Score=390.55 Aligned_cols=349 Identities=20% Similarity=0.265 Sum_probs=279.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCcCCCCcceeeec
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML--NFTPLNGKPIRVMY 99 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~i~v~~ 99 (454)
++++|||+|||++++|++|+++|++||+|.++.++++ +++|||+|.+.++|++|++.+ ++..+.|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5899999999999999999999999999999999864 369999999999999999975 67889999999999
Q ss_pred ccCCCcccc----------CCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHH
Q 012896 100 SHRDPSLRK----------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169 (454)
Q Consensus 100 ~~~~~~~~~----------~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~ 169 (454)
+........ ....+|+|.||++.+++++|+++|+.||.|.+|.+.++.. .++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHH
Confidence 864421111 1223689999999999999999999999999999987532 468999999999999999
Q ss_pred HHhcCceeCC--ceeEEeccccccc--------------------ch-----------hh--------------------
Q 012896 170 EKLNGMLLND--KQVYVGHFLRKQE--------------------RD-----------TE-------------------- 196 (454)
Q Consensus 170 ~~l~~~~~~~--~~l~v~~~~~~~~--------------------~~-----------~~-------------------- 196 (454)
+.|+|..+.+ +.|.|.++..... +. ..
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 9999999865 3566655432110 00 00
Q ss_pred --------------------------------------hccCccceEEEeCCCC-CCCHHHHHHhhcccCCeeEEEEEEC
Q 012896 197 --------------------------------------INKSKFTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRD 237 (454)
Q Consensus 197 --------------------------------------~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~ 237 (454)
....+..+|+|+||++ .+++++|+++|+.||.|..+.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0012456899999998 6999999999999999999999875
Q ss_pred CCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHH---H------HHHHHhhHH----------
Q 012896 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL---K------HQFEQNMKE---------- 298 (454)
Q Consensus 238 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~---~------~~~~~~~~~---------- 298 (454)
.+|+|||+|.+.++|..|+..|++..+.|+.|.|.++.......... . ..+......
T Consensus 312 ----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 ----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred ----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 36899999999999999999999999999999999875432111000 0 000000000
Q ss_pred HhhhcCCceEEEecCCCcCCHHHHHhccccCCC--ceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcc-
Q 012896 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS--ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP- 375 (454)
Q Consensus 299 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~- 375 (454)
....+++.+|||+|||..+++++|+++|+.||. |..+++....++ .+++|||+|.+.++|.+|+..|||..|.++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 001245678999999999999999999999998 888988765544 5789999999999999999999999999985
Q ss_pred -----eEEEEccch
Q 012896 376 -----LYVALAQRK 384 (454)
Q Consensus 376 -----l~v~~~~~~ 384 (454)
|+|+|++++
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999999753
No 3
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-48 Score=354.55 Aligned_cols=359 Identities=65% Similarity=1.037 Sum_probs=329.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
..|||+ +++||+.|+++|+++|+|.+|++++|. + +-|||||.|.+.++|.+|+..+|...+.|++++|.|+.++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468899 899999999999999999999999997 5 8999999999999999999999999999999999999998
Q ss_pred CccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeE
Q 012896 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (454)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~ 183 (454)
+.. +||.||++.++...|.+.|+.||.|++|++..+.+| ++|| ||+|.+++.|.+|++.++|..+.++.+.
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 766 999999999999999999999999999999999888 8999 9999999999999999999999999999
Q ss_pred Eecccccccchhhh--ccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHH
Q 012896 184 VGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261 (454)
Q Consensus 184 v~~~~~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 261 (454)
+.....+.++.... .......+++.+++.+.+++.|...|..+|.|.++.++.+..+.+++|+||.|.+.++|..|+.
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 99888776654333 3345667899999999999999999999999999999999998899999999999999999999
Q ss_pred HHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC
Q 012896 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341 (454)
Q Consensus 262 ~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 341 (454)
.+++..+.+..+.|..+....+..........+............+|||.|++..++++.|+++|+.||.|.+++|..+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999998777777777766666666667778899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchHHHHHHHHHHHhc
Q 012896 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397 (454)
Q Consensus 342 ~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 397 (454)
.|+++||+||.|.+.++|.+|+..+||..+.++.+.|.++.....+..+.+....+
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~ 362 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGA 362 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhcce
Confidence 99999999999999999999999999999999999999998666666665555444
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.3e-45 Score=344.44 Aligned_cols=338 Identities=27% Similarity=0.443 Sum_probs=232.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
+..+|||+|||.+++|++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCc
Q 012896 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180 (454)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~ 180 (454)
.... .....+|||+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.|++..+.++
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 5432 2245689999999999999999999999999999998875 678899999999999999999999999988774
Q ss_pred --eeEEecccccccchhhhccCccce-----EEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCCh
Q 012896 181 --QVYVGHFLRKQERDTEINKSKFTN-----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253 (454)
Q Consensus 181 --~l~v~~~~~~~~~~~~~~~~~~~~-----l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~ 253 (454)
.+.+.++................. .....++..+.. ..-+.+... ...+...
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--------------~~~~~~~ 218 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA-------AGIGPMHHA--------------AARFRPS 218 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc-------cCCCCccCc--------------ccccccC
Confidence 456655443321111000000000 000000000000 000000000 0000000
Q ss_pred -HHHHHHH-HHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCC
Q 012896 254 -DDAARAV-EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS 331 (454)
Q Consensus 254 -~~a~~a~-~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 331 (454)
....... .............. ....+....... ...............+.+|||+|||..+++++|+++|++||.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~ 295 (352)
T TIGR01661 219 AGDFTAVLAHQQQQHAVAQQHAA-QRASPPATDGQT--AGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGA 295 (352)
T ss_pred cchhhhhhhhhhhhccccccccc-ccCCCccccccc--cccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCC
Confidence 0000000 00000000000000 000000000000 000000000011123447999999999999999999999999
Q ss_pred ceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 332 ITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 332 v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
|.+|+|+++. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..+.
T Consensus 296 v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 296 VQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred eEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999997 89999999999999999999999999999999999999997654
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=307.02 Aligned_cols=272 Identities=26% Similarity=0.444 Sum_probs=229.5
Q ss_pred ccccccCCCCCCCCCC----CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHH
Q 012896 2 AQVQAQGQNVNGGGAN----ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77 (454)
Q Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~ 77 (454)
+++.+.||..-++..+ ..++.++.|||+.||.|+.|++|..+|++.|+|.+++++.|+.+|.++|||||.|.+++.
T Consensus 58 ~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~ 137 (506)
T KOG0117|consen 58 TLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEE 137 (506)
T ss_pred eEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHH
Confidence 3566667664444333 345889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcCCC-CcceeeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccC-ceeEEEEeeCC--CCCeee
Q 012896 78 AARALEMLNFTPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATDL--NGQSKG 153 (454)
Q Consensus 78 A~~a~~~l~~~~~~-g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~--~~~~~g 153 (454)
|+.|++.||+.+|. |+.|.|+.+-.+ ++|||+|||.++++++|++.+++.+ .|++|.+.+++ ..+++|
T Consensus 138 Aq~Aik~lnn~Eir~GK~igvc~Svan--------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRG 209 (506)
T KOG0117|consen 138 AQEAIKELNNYEIRPGKLLGVCVSVAN--------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRG 209 (506)
T ss_pred HHHHHHHhhCccccCCCEeEEEEeeec--------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccc
Confidence 99999999999995 999999887765 7899999999999999999999887 57888888775 367899
Q ss_pred EEEEEecCHHHHHHHHHHhc--CceeCCceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeE
Q 012896 154 YGFVQFDNEESAQKAIEKLN--GMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS 231 (454)
Q Consensus 154 ~a~V~f~~~~~A~~a~~~l~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~ 231 (454)
||||+|.+...|..|...|- ...+.|..+.|.|+.+....
T Consensus 210 FaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~-------------------------------------- 251 (506)
T KOG0117|consen 210 FAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP-------------------------------------- 251 (506)
T ss_pred eEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC--------------------------------------
Confidence 99999999999999998762 34555666666665432110
Q ss_pred EEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Q 012896 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311 (454)
Q Consensus 232 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 311 (454)
+.+.+.+ -..|||+
T Consensus 252 --------------------ded~ms~----------------------------------------------VKvLYVR 265 (506)
T KOG0117|consen 252 --------------------DEDTMSK----------------------------------------------VKVLYVR 265 (506)
T ss_pred --------------------Chhhhhh----------------------------------------------eeeeeee
Confidence 0110000 0139999
Q ss_pred cCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchHHHHHHH
Q 012896 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARL 391 (454)
Q Consensus 312 nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~ 391 (454)
||+..+|+|.|+++|++||.|+.|+.++| ||||.|.+.++|.+|++.+||++|+|..|.|.+|++..+++..+
T Consensus 266 NL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 266 NLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred ccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 99999999999999999999999999988 99999999999999999999999999999999999988877665
Q ss_pred H
Q 012896 392 Q 392 (454)
Q Consensus 392 ~ 392 (454)
.
T Consensus 339 ~ 339 (506)
T KOG0117|consen 339 K 339 (506)
T ss_pred h
Confidence 3
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.2e-40 Score=319.26 Aligned_cols=315 Identities=23% Similarity=0.360 Sum_probs=250.2
Q ss_pred cccccCCCCCCCCC----CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHH
Q 012896 3 QVQAQGQNVNGGGA----NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEA 78 (454)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A 78 (454)
+.+.+|+..-++.. ...+...++|||+|||++++|++|+++|++||+|.+++|++| .+++++|||||+|.+.++|
T Consensus 34 ~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A 112 (578)
T TIGR01648 34 LVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEA 112 (578)
T ss_pred ccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHH
Confidence 44555554433322 223456799999999999999999999999999999999999 7899999999999999999
Q ss_pred HHHHHHhCCcCCC-CcceeeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCc-eeEEEEeeC--CCCCeeeE
Q 012896 79 ARALEMLNFTPLN-GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN-ILSCKVATD--LNGQSKGY 154 (454)
Q Consensus 79 ~~a~~~l~~~~~~-g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~~~~~--~~~~~~g~ 154 (454)
++|++.||+..+. |+.+.|..+.. .++|||+|||+++++++|.+.|+.++. +.++.+... ..+.++||
T Consensus 113 ~~Ai~~lng~~i~~Gr~l~V~~S~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGF 184 (578)
T TIGR01648 113 KEAVKLLNNYEIRPGRLLGVCISVD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGF 184 (578)
T ss_pred HHHHHHcCCCeecCCcccccccccc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCce
Confidence 9999999999885 78888866543 468999999999999999999999863 555544433 23567899
Q ss_pred EEEEecCHHHHHHHHHHhcC--ceeCCceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhccc--CCee
Q 012896 155 GFVQFDNEESAQKAIEKLNG--MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY--GTIT 230 (454)
Q Consensus 155 a~V~f~~~~~A~~a~~~l~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~ 230 (454)
|||+|.++++|..|++.|.. ..+.++.|.|.++........ .......+|||+||+..+++++|+++|+.| |.|.
T Consensus 185 AFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~ 263 (578)
T TIGR01648 185 AFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVE 263 (578)
T ss_pred EEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceE
Confidence 99999999999999988853 467899999998876543322 122345789999999999999999999999 9999
Q ss_pred EEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHH----------HHHHHHhhHHHh
Q 012896 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL----------KHQFEQNMKEAA 300 (454)
Q Consensus 231 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~ 300 (454)
.+.++ ++||||+|.+.++|.+|+..|++..+.|+.|.|.++.+........ ............
T Consensus 264 rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~ 336 (578)
T TIGR01648 264 RVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQV 336 (578)
T ss_pred EEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcc
Confidence 98765 4599999999999999999999999999999999998754331100 000000011112
Q ss_pred hhcCCceEEEecCCCcCCHHHHHhccccCCCceE
Q 012896 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS 334 (454)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~ 334 (454)
..+...+++++|+++..+++.+.++|..+|.|..
T Consensus 337 ~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 337 YDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred cCccccccccccccccccccchhhccccCccccC
Confidence 2345678999999999999999999999987653
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.6e-40 Score=315.33 Aligned_cols=281 Identities=23% Similarity=0.349 Sum_probs=230.4
Q ss_pred CHHHHHHHHHHhCCcCCCCcceeeecccCCCc---cccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCC
Q 012896 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDPS---LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ 150 (454)
Q Consensus 74 ~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~~---~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~ 150 (454)
-.+.|.+|+.++++..+........+..+.+. .......+|||+|||+++++++|+++|+++|.|.+++++.+.++.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 36888999998887777655555555433221 122345789999999999999999999999999999999998899
Q ss_pred eeeEEEEEecCHHHHHHHHHHhcCceeC-CceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCC-
Q 012896 151 SKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT- 228 (454)
Q Consensus 151 ~~g~a~V~f~~~~~A~~a~~~l~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~- 228 (454)
++|||||+|.+.++|++|++.|++..+. ++.+.+.... ..++|||+|||..+++++|.+.|+.++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~------------~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV------------DNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc------------cCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998885 6666664432 2468999999999999999999999864
Q ss_pred eeEEEEEEC--CCCCceeEEEEEeCChHHHHHHHHHHcC--CCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcC
Q 012896 229 ITSAVVMRD--GDGKSKCFGFVNFENSDDAARAVEALNG--KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304 (454)
Q Consensus 229 v~~~~~~~~--~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (454)
+..+.+... ..++++||+||+|.+.++|..|+..+.. ..+.++.|.|.|+.+...... .....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-------------~~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-------------DVMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------ccccc
Confidence 444444333 2457899999999999999999988754 457899999999876543211 11123
Q ss_pred CceEEEecCCCcCCHHHHHhccccC--CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.++|||+||+..+++++|+++|++| |.|++|++++ +||||+|++.++|.+|++.|||..|.|+.|+|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4679999999999999999999999 9999998765 499999999999999999999999999999999998
Q ss_pred chHH
Q 012896 383 RKED 386 (454)
Q Consensus 383 ~~~~ 386 (454)
+...
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7654
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.1e-38 Score=318.34 Aligned_cols=258 Identities=41% Similarity=0.679 Sum_probs=230.9
Q ss_pred ceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccc
Q 012896 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (454)
Q Consensus 113 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~ 191 (454)
+|||+|||+++++++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|.+|+..+++..+.|+.|++.|.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999986 58899999999999999999999999999999999998865432
Q ss_pred cchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCc
Q 012896 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271 (454)
Q Consensus 192 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 271 (454)
. .......+|+|+||+.++++++|.++|+.||.|.++.+..+.++.++|||||+|.+.++|..|+..+++..+.++
T Consensus 82 ~----~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 82 S----LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred c----ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 2 222335679999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred eEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEE
Q 012896 272 EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351 (454)
Q Consensus 272 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv 351 (454)
.+.+.......... .......++|||+|||..+|+++|+++|+.||.|.++.+.++.+|+++|||||
T Consensus 158 ~i~v~~~~~~~~~~-------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 158 EVYVGRFIKKHERE-------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred eEEEeccccccccc-------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 99997765443332 01122346799999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHcCCceec----CcceEEEEccchHHH
Q 012896 352 AFSTPEEASRALLEMNGKMVV----SKPLYVALAQRKEDR 387 (454)
Q Consensus 352 ~f~~~~~A~~a~~~l~g~~~~----g~~l~v~~~~~~~~~ 387 (454)
+|++.++|.+|++.|+|..|. |+.|.|.++..+..+
T Consensus 225 ~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 225 NFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred EECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999999 999999998776655
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=260.59 Aligned_cols=311 Identities=30% Similarity=0.487 Sum_probs=233.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
...-..|.|.-||...|++||+.+|...|.|+++++++|+.+|.+-||+||.|.+++||++|+..||+..+..++|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 012896 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (454)
Q Consensus 100 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 178 (454)
+.+... .....+|||.+||..++..+|.++|++||.|..-++..+ .++.++|.+||.|...++|+.|++.|+|..-.
T Consensus 118 ARPSs~--~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 118 ARPSSD--SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred ccCChh--hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 876532 345678999999999999999999999999988888877 57999999999999999999999999998665
Q ss_pred Cce--eEEecccccccchhhhccCccceEEEeCCCCC-CCHHHHHHhhcc----cC-CeeEEEEEECCCCCceeEEEEEe
Q 012896 179 DKQ--VYVGHFLRKQERDTEINKSKFTNVYVKNLSES-TTEEDLQKSFGE----YG-TITSAVVMRDGDGKSKCFGFVNF 250 (454)
Q Consensus 179 ~~~--l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~----~g-~v~~~~~~~~~~~~~~g~afv~f 250 (454)
|.. |.|..+ |-|.. .+..-+..+|.. |+ ++.. ...+.| +
T Consensus 196 g~tepItVKFa---------------------nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh------~~~r~r------~ 242 (360)
T KOG0145|consen 196 GCTEPITVKFA---------------------NNPSQKTNQALLSQLYQSPARRYGGPMHH------QAQRFR------L 242 (360)
T ss_pred CCCCCeEEEec---------------------CCcccccchhhhHHhhcCccccCCCcccc------hhhhhc------c
Confidence 543 333332 22222 111222222221 11 1100 000000 0
Q ss_pred CChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCC
Q 012896 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330 (454)
Q Consensus 251 ~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g 330 (454)
.+.-....++.......+++-..-+...- ........+|||-||.++.+|.-|.++|.+||
T Consensus 243 ~~~~~~~~~~~rfsP~~~d~m~~l~~~~l-------------------p~~~~~g~ciFvYNLspd~de~~LWQlFgpFG 303 (360)
T KOG0145|consen 243 DNLLNPHAAQARFSPMTIDGMSGLAGVNL-------------------PGGPGGGWCIFVYNLSPDADESILWQLFGPFG 303 (360)
T ss_pred ccccchhhhhccCCCccccccceeeeecc-------------------CCCCCCeeEEEEEecCCCchHhHHHHHhCccc
Confidence 00000111111111111111111110000 00112356899999999999999999999999
Q ss_pred CceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 331 SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 331 ~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.|..|++++|- +.+.+||+||.+.+-++|..|+..|||..+.+|.|.|+|...+
T Consensus 304 Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 304 AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999997 5889999999999999999999999999999999999998643
No 10
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.6e-38 Score=284.04 Aligned_cols=344 Identities=25% Similarity=0.416 Sum_probs=276.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
+.||||++||++++.+.|.++|+.+|+|..+.++.++..+.++||+||.|.=.+|+++|++..++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999999999998889999999999999999999999999999999999988763
Q ss_pred CCccc------------------------cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEE
Q 012896 103 DPSLR------------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQ 158 (454)
Q Consensus 103 ~~~~~------------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~ 158 (454)
..... .....+|+|+|||+.+...+|..+|+.||.|.+|.|....++...|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 21110 012457999999999999999999999999999999998888888999999
Q ss_pred ecCHHHHHHHHHHhcCceeCCceeEEecccccccchhh------------------------------------------
Q 012896 159 FDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE------------------------------------------ 196 (454)
Q Consensus 159 f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~------------------------------------------ 196 (454)
|....+|..|++.+++..|.||.+.|.|+.++......
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 99999999999999999999999999988654321100
Q ss_pred --------------------h----------------------ccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEE
Q 012896 197 --------------------I----------------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234 (454)
Q Consensus 197 --------------------~----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~ 234 (454)
. +.....++||+|||+++++++|.+.|+.||.|....+
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~i 324 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAII 324 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEE
Confidence 0 0001157999999999999999999999999999988
Q ss_pred EECC-CCCceeEEEEEeCChHHHHHHHHHH-----cC-CCCCCceEEEeccccccHHHHHHHHHH---------------
Q 012896 235 MRDG-DGKSKCFGFVNFENSDDAARAVEAL-----NG-KKFDDKEWYVGKAQKKSERELELKHQF--------------- 292 (454)
Q Consensus 235 ~~~~-~~~~~g~afv~f~~~~~a~~a~~~l-----~~-~~~~g~~~~v~~~~~~~~~~~~~~~~~--------------- 292 (454)
..++ ++.+.|.|||.|.+..++.+|+... .+ ..+.||.+.|..+-...+.........
T Consensus 325 V~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~E 404 (678)
T KOG0127|consen 325 VKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLARE 404 (678)
T ss_pred EeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeecc
Confidence 8776 6999999999999999999999865 22 568899999988866543322211100
Q ss_pred ------------------------HHhh----HHHhhhcCCceEEEecCCCcCCHHHHHhcccc----C-CCce-EEEEe
Q 012896 293 ------------------------EQNM----KEAADKFQGANLYIKNLDDSIDDEKLKQLFSP----F-GSIT-SCKVM 338 (454)
Q Consensus 293 ------------------------~~~~----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~----~-g~v~-~~~~~ 338 (454)
.... .+..--.+.+.|.|.|||..++...|..+.-. | +.+. .|+.+
T Consensus 405 G~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~ 484 (678)
T KOG0127|consen 405 GLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQI 484 (678)
T ss_pred CccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhh
Confidence 0000 01111234567899999999999999887742 2 2232 23433
Q ss_pred eCC----CCCcceEEEEEeCCHHHHHHHHHHc
Q 012896 339 RDP----SGISRGSGFVAFSTPEEASRALLEM 366 (454)
Q Consensus 339 ~~~----~~~~~g~afv~f~~~~~A~~a~~~l 366 (454)
... .+.+.||+|+.|...+.|.+|+..+
T Consensus 485 ~~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 485 KFLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hhHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 332 4678999999999999999999665
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-38 Score=260.57 Aligned_cols=235 Identities=25% Similarity=0.472 Sum_probs=195.9
Q ss_pred CCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccc
Q 012896 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (454)
Q Consensus 109 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~ 188 (454)
+..++|||+||...+|++-|..+|++.|+|.+++++.+ .+.+.++.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 45789999999999999999999999999999999865 12222222
Q ss_pred ccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCC
Q 012896 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKK 267 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 267 (454)
.... ...........++|+.|.+.++.++|++.|.+||+|.+++++++. +++++||+||.|.+.++|++|+..|+|..
T Consensus 50 ~p~n-Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 50 APGN-QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred Cccc-CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 2211 111112224579999999999999999999999999999999986 79999999999999999999999999999
Q ss_pred CCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcce
Q 012896 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347 (454)
Q Consensus 268 ~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g 347 (454)
+++|.|+..|+..+...........++- -....++.++|||+|++..+||++|++.|++||.|.+|++.++ +|
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfdeV--~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qG 201 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDEV--YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QG 201 (321)
T ss_pred eccceeeccccccCccccCCCCccHHHH--hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cc
Confidence 9999999999998773322222222111 1123456889999999999999999999999999999999998 89
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 348 ~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
||||.|++.|.|.+||..+||.+|.|..+++.|.+...
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 99999999999999999999999999999999998654
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.8e-36 Score=292.96 Aligned_cols=342 Identities=22% Similarity=0.313 Sum_probs=230.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.+...++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|+. |++..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999997 89999999999998
Q ss_pred cccCCCcc----------ccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHH
Q 012896 99 YSHRDPSL----------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQK 167 (454)
Q Consensus 99 ~~~~~~~~----------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~ 167 (454)
++...... ......+|||+|||..+++++|.++|+.||.|..|.+..+. ++.++|||||+|.+.++|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 76532111 11235789999999999999999999999999999999886 46889999999999999999
Q ss_pred HHHHhcCceeCCceeEEecccccccchhhhccCc-cce-EEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeE
Q 012896 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FTN-VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245 (454)
Q Consensus 168 a~~~l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~-l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~ 245 (454)
|++.|+|..+.|+.|.|.++.............. ... -..+..........+...+...+......+. ....
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----- 317 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIP-GTGS----- 317 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCC-Cccc-----
Confidence 9999999999999999998764322211100000 000 0000000111122222222222211000000 0000
Q ss_pred EEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCC-------
Q 012896 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID------- 318 (454)
Q Consensus 246 afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~------- 318 (454)
....+..+.........+.......... ..................+|+|.||....+
T Consensus 318 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 318 ----------KIALMQKLQRDGIIDPNIPSRYATGALA-----IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred ----------hhhhhccccccccccccccccccccccc-----cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 0000000000000000000000000000 000000000000123467899999965433
Q ss_pred ---HHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 319 ---DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 319 ---~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
.+||++.|++||.|.+|.+... ...|++||+|.+.++|.+|++.|||+.|+|+.|.+.|.....
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 3689999999999999998643 347899999999999999999999999999999999987554
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.3e-36 Score=288.17 Aligned_cols=172 Identities=24% Similarity=0.455 Sum_probs=155.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
....++|||+|||+++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCcc---------ccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHH
Q 012896 100 SHRDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 169 (454)
Q Consensus 100 ~~~~~~~---------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~ 169 (454)
....+.. ......+|||+|||+++++++|+++|+.||.|.++++..++ ++.++|||||+|.+.++|..|+
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 5432211 11234689999999999999999999999999999999986 5778999999999999999999
Q ss_pred HHhcCceeCCceeEEecccccc
Q 012896 170 EKLNGMLLNDKQVYVGHFLRKQ 191 (454)
Q Consensus 170 ~~l~~~~~~~~~l~v~~~~~~~ 191 (454)
..||+..++|+.|+|.++..+.
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999998877543
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.7e-36 Score=290.79 Aligned_cols=262 Identities=20% Similarity=0.325 Sum_probs=210.4
Q ss_pred CcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh--cCceeCCceeEEeccc
Q 012896 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL--NGMLLNDKQVYVGHFL 188 (454)
Q Consensus 111 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l--~~~~~~~~~l~v~~~~ 188 (454)
+++|||+|||+.+++++|+++|+.||.|.+|.++++ +++|||+|.+.++|..|++.+ ++..+.|+.|.|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 578999999999999999999999999999999865 679999999999999999875 6789999999999876
Q ss_pred ccccchhh------hccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHH
Q 012896 189 RKQERDTE------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262 (454)
Q Consensus 189 ~~~~~~~~------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 262 (454)
........ .......+|+|.||+..+++++|+++|+.||.|.++.+.++.. +++|||+|.+.++|.+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHH
Confidence 54311111 1122335789999999999999999999999999999887532 46899999999999999999
Q ss_pred HcCCCCCC--ceEEEeccccccHH--------------------HHHHHH----HHH-----------------------
Q 012896 263 LNGKKFDD--KEWYVGKAQKKSER--------------------ELELKH----QFE----------------------- 293 (454)
Q Consensus 263 l~~~~~~g--~~~~v~~~~~~~~~--------------------~~~~~~----~~~----------------------- 293 (454)
|+|..+.+ +.+++.++...... ...... ...
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999965 46777776542210 000000 000
Q ss_pred ----------------Hhh-----------H---HHhhhcCCceEEEecCCC-cCCHHHHHhccccCCCceEEEEeeCCC
Q 012896 294 ----------------QNM-----------K---EAADKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPS 342 (454)
Q Consensus 294 ----------------~~~-----------~---~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~ 342 (454)
... . ......++++|||+|||+ .+|+++|+++|+.||.|.+|+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 000 0 000123567999999998 6999999999999999999999987
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 343 ~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.+|+|||+|.+.++|..|+..|||..|.|++|+|.+++..
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3689999999999999999999999999999999998654
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.6e-36 Score=263.24 Aligned_cols=363 Identities=23% Similarity=0.343 Sum_probs=240.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC-C--Ccce
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL-N--GKPI 95 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~--g~~i 95 (454)
.+...-++||+-+|...+|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+..||+.+. . ..++
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 346778999999999999999999999999999999999999999999999999999999999999987654 3 4668
Q ss_pred eeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc
Q 012896 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175 (454)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~ 175 (454)
.|++++..... ....++|||+-|++.+++.+++++|++||.|++|.|.++.++.++|++||.|.+.+.|..|++.||+.
T Consensus 110 qvk~Ad~E~er-~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 110 QVKYADGERER-IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred eecccchhhhc-cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 88887755332 24468899999999999999999999999999999999999999999999999999999999999885
Q ss_pred -eeCC--ceeEEecccccccchhhhc--cCccceEEEeCC-----------------------------------CCC--
Q 012896 176 -LLND--KQVYVGHFLRKQERDTEIN--KSKFTNVYVKNL-----------------------------------SES-- 213 (454)
Q Consensus 176 -~~~~--~~l~v~~~~~~~~~~~~~~--~~~~~~l~v~nl-----------------------------------~~~-- 213 (454)
.+.| ..|.|.++....++..... ..+.....++|. ++-
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~ 268 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGP 268 (510)
T ss_pred eeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCC
Confidence 3444 4677777766554433221 111111111111 110
Q ss_pred CCHHHHHHhhcccCCeeEEEEEECCCCCcee------EEEEE----------eCCh-HHHHHHHHH-HcCCCCCCceEEE
Q 012896 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKC------FGFVN----------FENS-DDAARAVEA-LNGKKFDDKEWYV 275 (454)
Q Consensus 214 ~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g------~afv~----------f~~~-~~a~~a~~~-l~~~~~~g~~~~v 275 (454)
++. .+.......+..... .........+ +.|.. +.+. ......+.. .....+.+....+
T Consensus 269 l~a-~~~qq~~~~~~~~ta--~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~ 345 (510)
T KOG0144|consen 269 LNA-TQLQQAAALAAAATA--AQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANY 345 (510)
T ss_pred cch-hHHHHHHHhhhhccc--ccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhc
Confidence 010 000000000000000 0000000000 00000 0000 000000000 0000000000000
Q ss_pred ec-----------------------cccccHHH---HHHH--HHHH---------------------HhhHHHhhhcCCc
Q 012896 276 GK-----------------------AQKKSERE---LELK--HQFE---------------------QNMKEAADKFQGA 306 (454)
Q Consensus 276 ~~-----------------------~~~~~~~~---~~~~--~~~~---------------------~~~~~~~~~~~~~ 306 (454)
.. ...+.... .... ..+. .......+.+.+.
T Consensus 346 n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGa 425 (510)
T KOG0144|consen 346 NLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGA 425 (510)
T ss_pred ccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcc
Confidence 00 00000000 0000 0000 0001124456677
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
+|||.+||.++-+.+|...|.+||.|.+.++..|+ ++-+++|+||.|++..+|..||..+||+.|.+++|+|.+.+.+.
T Consensus 426 nlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 426 NLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred ceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 89999999999999999999999999999998887 89999999999999999999999999999999999999886543
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.3e-34 Score=259.20 Aligned_cols=277 Identities=26% Similarity=0.427 Sum_probs=230.4
Q ss_pred cceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccccc
Q 012896 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 112 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~ 190 (454)
.+|||++||+.++.++|.++|+..|+|..+.++.+. .+..+||+||.|.=.+++++|+....+..+.|+.|.+..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999999999986 4689999999999999999999999999999999999877654
Q ss_pred ccchhh--------------------hccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEe
Q 012896 191 QERDTE--------------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250 (454)
Q Consensus 191 ~~~~~~--------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f 250 (454)
...... ....+...|+|+|||+.+...+|..+|+.||.|..+.|++..+++..|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 332200 011224679999999999999999999999999999999888888889999999
Q ss_pred CChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHH-------HHH--H-------------------------HH--
Q 012896 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL-------KHQ--F-------------------------EQ-- 294 (454)
Q Consensus 251 ~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~-------~~~--~-------------------------~~-- 294 (454)
....+|..|+..+++..+.||.+.|.|+-+........ ... . ..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999999997654322211 000 0 00
Q ss_pred h-----------hH------H-------------------HhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEe
Q 012896 295 N-----------MK------E-------------------AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338 (454)
Q Consensus 295 ~-----------~~------~-------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~ 338 (454)
. .. . ........+|||+|||+++|+++|.++|++||.|.++.|+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 00 0 0000113579999999999999999999999999999999
Q ss_pred eCC-CCCcceEEEEEeCCHHHHHHHHHHc-----CC-ceecCcceEEEEccchHHHH
Q 012896 339 RDP-SGISRGSGFVAFSTPEEASRALLEM-----NG-KMVVSKPLYVALAQRKEDRR 388 (454)
Q Consensus 339 ~~~-~~~~~g~afv~f~~~~~A~~a~~~l-----~g-~~~~g~~l~v~~~~~~~~~~ 388 (454)
.++ ++.++|+|||.|.+..+|..||.+. .| ..|.||.|.|..|-.+..-.
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 987 8999999999999999999999887 24 68899999999997665433
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.2e-33 Score=278.18 Aligned_cols=256 Identities=22% Similarity=0.386 Sum_probs=207.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcC------------CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQM------------GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~------------G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 85 (454)
......++|||+|||+++|+++|+++|+.+ +.|..+.+. ..+|||||+|.+.++|..||+ |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-C
Confidence 445678999999999999999999999974 345555543 345799999999999999995 9
Q ss_pred CCcCCCCcceeeecccCCCc---------------------------cccCCCcceeeecCCcccChHHHhhhhcccCce
Q 012896 86 NFTPLNGKPIRVMYSHRDPS---------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNI 138 (454)
Q Consensus 86 ~~~~~~g~~i~v~~~~~~~~---------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v 138 (454)
++..|.|+.|+|........ .......+|||+|||..+++++|+++|+.||.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99999999999975432110 011234689999999999999999999999999
Q ss_pred eEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccccchh----------------------
Q 012896 139 LSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT---------------------- 195 (454)
Q Consensus 139 ~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~---------------------- 195 (454)
..+.++.+. ++.++|||||+|.+.++|..|+..|++..+.|+.|.|.++........
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 999999884 688999999999999999999999999999999999977643211100
Q ss_pred hhccCccceEEEeCCCCC--C--------CHHHHHHhhcccCCeeEEEEEECC----CCCceeEEEEEeCChHHHHHHHH
Q 012896 196 EINKSKFTNVYVKNLSES--T--------TEEDLQKSFGEYGTITSAVVMRDG----DGKSKCFGFVNFENSDDAARAVE 261 (454)
Q Consensus 196 ~~~~~~~~~l~v~nl~~~--~--------t~~~l~~~f~~~g~v~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~ 261 (454)
.....+...|++.|+... + ..++|++.|+.||.|..+.++... .+...|++||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 001224567888888532 1 226789999999999999988652 24567899999999999999999
Q ss_pred HHcCCCCCCceEEEecccc
Q 012896 262 ALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 262 ~l~~~~~~g~~~~v~~~~~ 280 (454)
.|+|..+.|+.|.+.+...
T Consensus 483 ~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HcCCCEECCeEEEEEEeCH
Confidence 9999999999999988764
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.4e-33 Score=277.95 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=209.0
Q ss_pred CCCcceeeecCCcccChHHHhhhhccc------------CceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 109 SGAGNIFIKNLDKAIDHKALHDTFSAF------------GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 109 ~~~~~l~v~nlp~~~~~~~l~~~f~~~------------g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
...++|||+|||+.+++++|.++|..+ +.|..+.+.. .+|||||+|.+.++|..|+. |++..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 346789999999999999999999874 2344444433 47899999999999999995 99999
Q ss_pred eCCceeEEecccccccch-----------------------hhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEE
Q 012896 177 LNDKQVYVGHFLRKQERD-----------------------TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233 (454)
Q Consensus 177 ~~~~~l~v~~~~~~~~~~-----------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~ 233 (454)
+.|+.|.|.......... ........++|||+|||..+++++|.++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 999999986443221000 000122346899999999999999999999999999999
Q ss_pred EEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHH-----------HHHHHHHhhHHHhh
Q 012896 234 VMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE-----------LKHQFEQNMKEAAD 301 (454)
Q Consensus 234 ~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 301 (454)
++.+. ++.++|||||+|.+.++|..|+..|++..+.|+.|.|.++......... ....... ......
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 405 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQ-SILQIG 405 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchh-hhcccc
Confidence 88774 6889999999999999999999999999999999999887542211000 0000000 000112
Q ss_pred hcCCceEEEecCCCc--C--------CHHHHHhccccCCCceEEEEeeCC----CCCcceEEEEEeCCHHHHHHHHHHcC
Q 012896 302 KFQGANLYIKNLDDS--I--------DDEKLKQLFSPFGSITSCKVMRDP----SGISRGSGFVAFSTPEEASRALLEMN 367 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~--~--------~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~g~afv~f~~~~~A~~a~~~l~ 367 (454)
..++.+|+|.|+... + ..++|+++|++||.|.+|.|+++. ++...|+|||+|.++++|.+|+..||
T Consensus 406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 235678999999642 1 236899999999999999998762 34567999999999999999999999
Q ss_pred CceecCcceEEEEccchH
Q 012896 368 GKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 368 g~~~~g~~l~v~~~~~~~ 385 (454)
|..|+|+.|.|.|.....
T Consensus 486 Gr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 486 GRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred CCEECCeEEEEEEeCHHH
Confidence 999999999999986543
No 19
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=262.01 Aligned_cols=330 Identities=26% Similarity=0.404 Sum_probs=265.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
-..+.+|||+|||+.++++||+.+| |||.|...+.|.+|-..+++..|.|+-+.|..
T Consensus 224 i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp 280 (725)
T KOG0110|consen 224 ISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLP 280 (725)
T ss_pred HHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecC
Confidence 3567899999999999999999999 78999999999999999999999999998765
Q ss_pred ccCCCccc------------------------------------------------------------------------
Q 012896 100 SHRDPSLR------------------------------------------------------------------------ 107 (454)
Q Consensus 100 ~~~~~~~~------------------------------------------------------------------------ 107 (454)
........
T Consensus 281 ~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~ 360 (725)
T KOG0110|consen 281 SKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRV 360 (725)
T ss_pred cchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhh
Confidence 43210000
Q ss_pred ---------------------cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHH
Q 012896 108 ---------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166 (454)
Q Consensus 108 ---------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~ 166 (454)
......++++|||..+..++|...|..||+|..+.+. +.|. .++|.|.++.+|.
T Consensus 361 ~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr 435 (725)
T KOG0110|consen 361 VQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEAR 435 (725)
T ss_pred chhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchH
Confidence 0012458999999999999999999999999998443 2232 4899999999999
Q ss_pred HHHHHhcCceeCCceeEEecccccccc-------------hh--------------------h-----------hccCcc
Q 012896 167 KAIEKLNGMLLNDKQVYVGHFLRKQER-------------DT--------------------E-----------INKSKF 202 (454)
Q Consensus 167 ~a~~~l~~~~~~~~~l~v~~~~~~~~~-------------~~--------------------~-----------~~~~~~ 202 (454)
.|...|....+....+++.|+...... .. . ......
T Consensus 436 ~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~ 515 (725)
T KOG0110|consen 436 KAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETE 515 (725)
T ss_pred HHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccc
Confidence 999999888777777766544321111 00 0 000111
Q ss_pred ceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCC----CceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecc
Q 012896 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG----KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (454)
Q Consensus 203 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~ 278 (454)
..||+.||++.++.+++...|...|.|.++.|....+. .+.||+||+|.+.++|..|+..|+|..++|+.+.+.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 23999999999999999999999999999988876544 35599999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeC-CCCCcceEEEEEeCCHH
Q 012896 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPE 357 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~ 357 (454)
......... . ........++|+|.|||+..+..+++.+|..||.|.+|+|+.. ..+.++|||||.|-+++
T Consensus 596 ~~k~~~~~g-K--------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 596 ENKPASTVG-K--------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred cCccccccc-c--------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 822221111 0 1111122678999999999999999999999999999999988 35667999999999999
Q ss_pred HHHHHHHHcCCceecCcceEEEEccchHH
Q 012896 358 EASRALLEMNGKMVVSKPLYVALAQRKED 386 (454)
Q Consensus 358 ~A~~a~~~l~g~~~~g~~l~v~~~~~~~~ 386 (454)
+|.+|+.+|.+..+.||.|.+.||+....
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccchH
Confidence 99999999999999999999999987664
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-32 Score=224.79 Aligned_cols=221 Identities=30% Similarity=0.531 Sum_probs=192.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
...|||||+||..++||+-|..||++.|+|..++++.+ .++|.|+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWA 48 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhccccc
Confidence 45699999999999999999999999999999998865 3444444
Q ss_pred cCCC---ccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 101 HRDP---SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 101 ~~~~---~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
.... +......-.+||+.|.+.++.++|++.|.+||+|.++++++|. +++++||+||.|.+.++|++|+..|+|.=
T Consensus 49 ~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 49 TAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred cCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 3221 1111224579999999999999999999999999999999995 79999999999999999999999999999
Q ss_pred eCCceeEEecccccccchhh----------hccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEE
Q 012896 177 LNDKQVYVGHFLRKQERDTE----------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246 (454)
Q Consensus 177 ~~~~~l~v~~~~~~~~~~~~----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a 246 (454)
+.+|.|+-.|+.++...... ...+.+++++++|++..+++++|+..|+.||.|.++++.++ +||+
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYa 203 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYA 203 (321)
T ss_pred eccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceE
Confidence 99999999999987643211 23445688999999999999999999999999999999965 7899
Q ss_pred EEEeCChHHHHHHHHHHcCCCCCCceEEEeccccc
Q 012896 247 FVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (454)
Q Consensus 247 fv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~ 281 (454)
||.|.+.|.|.+|+-.+++..+.|..++|.|.+..
T Consensus 204 FVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 204 FVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred EEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999999999999999998753
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-31 Score=241.93 Aligned_cols=297 Identities=36% Similarity=0.570 Sum_probs=244.3
Q ss_pred ceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccccccc
Q 012896 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192 (454)
Q Consensus 113 ~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~ 192 (454)
.|+|+ +++++..|.++|+.+|+|.++++..+. . +.|||||.|.++.+|.+|+..++...+.|+.+++.|......
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 57888 889999999999999999999999998 6 999999999999999999999999999999999999765544
Q ss_pred chhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCce
Q 012896 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272 (454)
Q Consensus 193 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 272 (454)
. ++|.||++.++..+|.+.|+.||.|.+|.+..+.+| ++|| ||+|.+.+.|.+|+..++|..+.+..
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 3 999999999999999999999999999999999888 8999 99999999999999999999999999
Q ss_pred EEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEE
Q 012896 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352 (454)
Q Consensus 273 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~ 352 (454)
+.+.......++...... ..+ .-++++|.|++...+++.|.++|+.||.|.++.++++..+++++|+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~~~---------~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-YKK---------RFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-hhh---------hhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999998877665443332 111 2346999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHcCCceecCcceEEEEccchHHHHHHHHHHHhccCCcccCCCCCCCCCCCCCCccccchhhhhhcccc
Q 012896 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGAWIWLSAAACSWYEA 432 (454)
Q Consensus 353 f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (454)
|++.++|..|+..|++..+.+..+.|.-+..+..+................... +....+..+.............+.
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~--~~~nl~vknld~~~~~e~L~~~f~ 292 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSL--QGANLYVKNLDETLSDEKLRKIFS 292 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccc--cccccccccCccccchhHHHHHHh
Confidence 999999999999999999999999999887755555444333222221111111 111122222333444455555666
Q ss_pred ccccccc
Q 012896 433 RWGSHAK 439 (454)
Q Consensus 433 ~~g~~~~ 439 (454)
.+|...+
T Consensus 293 ~~GeI~s 299 (369)
T KOG0123|consen 293 SFGEITS 299 (369)
T ss_pred cccceee
Confidence 6666555
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.2e-30 Score=238.92 Aligned_cols=171 Identities=29% Similarity=0.515 Sum_probs=154.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
......++|||+|||+++++++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
.++..... .....+|||+|||+.+++++|+++|++||.|..++++.+. ++.++++|||+|.+.++|+.|++.|++..
T Consensus 182 ~~a~p~~~--~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 182 SYARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred eccccccc--ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 98865432 2345689999999999999999999999999999999885 78889999999999999999999999998
Q ss_pred eCC--ceeEEeccccc
Q 012896 177 LND--KQVYVGHFLRK 190 (454)
Q Consensus 177 ~~~--~~l~v~~~~~~ 190 (454)
+.+ +.|.|.++...
T Consensus 260 ~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEH 275 (346)
T ss_pred cCCCceeEEEEECCcc
Confidence 876 56777665543
No 23
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=218.98 Aligned_cols=363 Identities=20% Similarity=0.270 Sum_probs=269.2
Q ss_pred ccccCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q 012896 4 VQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83 (454)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 83 (454)
+-+.++............+++.|++||||++++|+||.+++.+||+|..+...+.+. .|||+|.+.++|...+.
T Consensus 9 ~s~~~~~kf~~~~~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~ 82 (492)
T KOG1190|consen 9 ASGNDSKKFKYTQRSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVN 82 (492)
T ss_pred ccCCCCCCcccccccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheee
Confidence 334444444455556677999999999999999999999999999999999987643 79999999999998666
Q ss_pred HhCCc--CCCCcceeeecccCCCc-----------------------------c--cc-------CCCcceeeecCCccc
Q 012896 84 MLNFT--PLNGKPIRVMYSHRDPS-----------------------------L--RK-------SGAGNIFIKNLDKAI 123 (454)
Q Consensus 84 ~l~~~--~~~g~~i~v~~~~~~~~-----------------------------~--~~-------~~~~~l~v~nlp~~~ 123 (454)
..... .+.|+++.|.++.-... . .. ..--+++|.|+-..+
T Consensus 83 ~y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypV 162 (492)
T KOG1190|consen 83 YYTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPV 162 (492)
T ss_pred cccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeee
Confidence 54322 34688888877641100 0 00 011247788999999
Q ss_pred ChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCC--ceeEEecccc----------cc
Q 012896 124 DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND--KQVYVGHFLR----------KQ 191 (454)
Q Consensus 124 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~--~~l~v~~~~~----------~~ 191 (454)
+.|-|.++|++||.|.+|..+....+. .|+|+|.+.+.|..|...|+|..|.+ +.+++....- +.
T Consensus 163 slDVLHqvFS~fG~VlKIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkS 239 (492)
T KOG1190|consen 163 SLDVLHQVFSKFGFVLKIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKS 239 (492)
T ss_pred EHHHHHHHHhhcceeEEEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeecccccc
Confidence 999999999999999998887764443 49999999999999999999987754 3444432210 00
Q ss_pred c--c------h--------------------------------------hhhccC-ccceEEEeCCCC-CCCHHHHHHhh
Q 012896 192 E--R------D--------------------------------------TEINKS-KFTNVYVKNLSE-STTEEDLQKSF 223 (454)
Q Consensus 192 ~--~------~--------------------------------------~~~~~~-~~~~l~v~nl~~-~~t~~~l~~~f 223 (454)
. . . ...... .+..|.+.||.. .+|++-|..+|
T Consensus 240 RDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlF 319 (492)
T KOG1190|consen 240 RDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLF 319 (492)
T ss_pred ccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHH
Confidence 0 0 0 000000 135677888865 48999999999
Q ss_pred cccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHH-------HHHHHHHhh
Q 012896 224 GEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE-------LKHQFEQNM 296 (454)
Q Consensus 224 ~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~-------~~~~~~~~~ 296 (454)
.-||.|..+.+...+. .-|+|+|.+...|.-|+..|+|..+.|+.|++.+++........ +...+..+.
T Consensus 320 gvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~sp 395 (492)
T KOG1190|consen 320 GVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSP 395 (492)
T ss_pred hhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCc
Confidence 9999999999998643 35999999999999999999999999999999988764332111 111111111
Q ss_pred H----------HHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 012896 297 K----------EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDPSGISRGSGFVAFSTPEEASRALLE 365 (454)
Q Consensus 297 ~----------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~ 365 (454)
. -..-.+++.+|++.|+|..++||+|+++|..-|...+ .++... .+.+|++++.++++|..|+..
T Consensus 396 LhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k----d~kmal~q~~sveeA~~ali~ 471 (492)
T KOG1190|consen 396 LHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK----DRKMALPQLESVEEAIQALID 471 (492)
T ss_pred hhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC----CcceeecccCChhHhhhhccc
Confidence 1 1122356778999999999999999999988886544 444332 366999999999999999999
Q ss_pred cCCceecC-cceEEEEccc
Q 012896 366 MNGKMVVS-KPLYVALAQR 383 (454)
Q Consensus 366 l~g~~~~g-~~l~v~~~~~ 383 (454)
+|+..+.+ ..|+|+|++.
T Consensus 472 ~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 472 LHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccccCCCCceEEEEeecc
Confidence 99999875 5999999874
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.9e-29 Score=229.82 Aligned_cols=171 Identities=33% Similarity=0.545 Sum_probs=153.7
Q ss_pred ccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEe
Q 012896 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276 (454)
Q Consensus 198 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~ 276 (454)
.....++|||+|||+++++++|+++|+.||.|..+.++.+. +++++|||||+|.+.++|..|+..|++..+.++.|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456789999999999999999999999999999998874 68899999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCC
Q 012896 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355 (454)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~ 355 (454)
++.+... ....++|||+|||..+|+++|+++|++||.|+.++|+++. +++++|||||+|.+
T Consensus 183 ~a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 183 YARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ccccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 8764321 1134679999999999999999999999999999999987 89999999999999
Q ss_pred HHHHHHHHHHcCCceecC--cceEEEEccchHH
Q 012896 356 PEEASRALLEMNGKMVVS--KPLYVALAQRKED 386 (454)
Q Consensus 356 ~~~A~~a~~~l~g~~~~g--~~l~v~~~~~~~~ 386 (454)
.++|++||+.||+..+.+ ++|+|++++....
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999999999998876 7899999986543
No 25
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.96 E-value=7.1e-28 Score=212.47 Aligned_cols=238 Identities=18% Similarity=0.240 Sum_probs=197.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~-~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
..|.+||.|||+++...+|+++++ +.|.|+.|.+..| ..++.+|||.|+|++.|.+++|++.||...+.|++|+|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 446799999999999999999997 5689999999998 46889999999999999999999999999999999999765
Q ss_pred cCCCccc----cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 101 HRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 101 ~~~~~~~----~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
+..+... .......|+.++-...-+..|...+.--|.+..-.+.+|.++.+++..+++|.+.-.+..++.-+....
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 5432111 123467899999999999999999988888888888888899999999999999888888887544443
Q ss_pred eCCceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHH
Q 012896 177 LNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDA 256 (454)
Q Consensus 177 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a 256 (454)
..-+.+.+ ...+....+||.||...+-...|.+.|.--|.+..+.+..++.+.++|++.++|...-.|
T Consensus 202 ~Flr~~h~------------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpvea 269 (608)
T KOG4212|consen 202 SFLRSLHI------------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEA 269 (608)
T ss_pred hhhhhccC------------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHH
Confidence 33333332 223334678999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHcCCCCCCce
Q 012896 257 ARAVEALNGKKFDDKE 272 (454)
Q Consensus 257 ~~a~~~l~~~~~~g~~ 272 (454)
.+|+..+++.-+..++
T Consensus 270 vqaIsml~~~g~~~~~ 285 (608)
T KOG4212|consen 270 VQAISMLDRQGLFDRR 285 (608)
T ss_pred HHHHHhhccCCCcccc
Confidence 9999887764444443
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.2e-27 Score=230.19 Aligned_cols=177 Identities=24% Similarity=0.433 Sum_probs=151.4
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccc
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~ 279 (454)
...+|||+||++.+++++|+++|+.||.|.++.++.+. +++++|||||+|.+.++|..|+..++|..+.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45689999999999999999999999999999998875 68899999999999999999999999999999999998644
Q ss_pred cccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHH
Q 012896 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~ 358 (454)
.......... .........++|||+|||..+++++|+++|+.||.|.+++|.++. +++++|||||+|.+.++
T Consensus 186 ~~p~a~~~~~-------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 186 NMPQAQPIID-------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred cccccccccc-------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 3211100000 000111234689999999999999999999999999999999986 67899999999999999
Q ss_pred HHHHHHHcCCceecCcceEEEEccch
Q 012896 359 ASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 359 A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
|.+|++.|||..|+|+.|+|.++...
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999999988743
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9.6e-28 Score=211.58 Aligned_cols=175 Identities=30% Similarity=0.564 Sum_probs=152.0
Q ss_pred CccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCC-CCC--ceEEE
Q 012896 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKK-FDD--KEWYV 275 (454)
Q Consensus 200 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g--~~~~v 275 (454)
...-.+||+.+|..++|.||+.+|++||.|.+|.+++++ ++.++|+|||.|.+.++|.+|+.+|+... +.| ..+.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 344679999999999999999999999999999999987 68999999999999999999999998766 444 46777
Q ss_pred eccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCC
Q 012896 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355 (454)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~ 355 (454)
.++..+.++. +..++|||+-|+..+||.+++++|++||.|++|+|+++.++.+||||||+|.+
T Consensus 112 k~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 112 KYADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred cccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 7776544332 23457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCc-eecC--cceEEEEccchHHHHHHH
Q 012896 356 PEEASRALLEMNGK-MVVS--KPLYVALAQRKEDRRARL 391 (454)
Q Consensus 356 ~~~A~~a~~~l~g~-~~~g--~~l~v~~~~~~~~~~~~~ 391 (454)
.+.|..|+++|||. .+.| .+|.|+||+.++.+..++
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 99999999999996 4554 799999998776654443
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=8.6e-28 Score=219.09 Aligned_cols=330 Identities=22% Similarity=0.314 Sum_probs=231.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
...++..++|++.-|+..+++.+|++||+.+|+|..|.++.|..+++++|.|||+|.+.++...|+. |.|..+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeE
Confidence 3456778999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred eecccCCCcc--------c----cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHH
Q 012896 97 VMYSHRDPSL--------R----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEE 163 (454)
Q Consensus 97 v~~~~~~~~~--------~----~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~ 163 (454)
|+.+...... . ...-..|+|+||.++++++.|+.+|+.||.|..|.+.++. +|.++||+|++|.+.+
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 9876432111 0 0111239999999999999999999999999999999996 8999999999999999
Q ss_pred HHHHHHHHhcCceeCCceeEEecccccccchhh-hccCccceEEEeCCCCCCC-HHHHHHhhcccCCeeEEEEEECCCCC
Q 012896 164 SAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE-INKSKFTNVYVKNLSESTT-EEDLQKSFGEYGTITSAVVMRDGDGK 241 (454)
Q Consensus 164 ~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~l~v~nl~~~~t-~~~l~~~f~~~g~v~~~~~~~~~~~~ 241 (454)
+|..|+..|||..+.|+.|.|..-..+...... .........--.+|+.... ..++...|.+.-.+. +..
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~---~~s----- 403 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS---LPS----- 403 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc---ccc-----
Confidence 999999999999999999999766554433222 0000000011122332222 234444443322211 111
Q ss_pred ceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCC--CcCC-
Q 012896 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD--DSID- 318 (454)
Q Consensus 242 ~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~~~~- 318 (454)
+...+..++..+......+-...+.-..+... ...-..++.|+.+.|+= ...|
T Consensus 404 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--------------~p~~~i~t~C~lL~nMFdpstete 459 (549)
T KOG0147|consen 404 ----------TAISALLLLAKLASAAQFNGVVRVRSVDPADA--------------SPAFDIPTQCLLLSNMFDPSTETE 459 (549)
T ss_pred ----------hhhhHHHhccccchHHhhcCCcCccccCcccc--------------ccccCCccHHHHHhhcCCcccccC
Confidence 11111111111111111111000111111000 00001344566677762 2222
Q ss_pred -------HHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 319 -------DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 319 -------~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.+|+.+.+++||.|.+|.+.++ +-|+.||.|.+.++|..|+.+|||..|.|+.|..+|-..
T Consensus 460 ~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 460 PNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred cchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 2788899999999999998665 348999999999999999999999999999999999753
No 29
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=4.6e-26 Score=215.33 Aligned_cols=171 Identities=34% Similarity=0.541 Sum_probs=150.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC--cceeee
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG--KPIRVM 98 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~ 98 (454)
...++|||+|||.++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.| .++.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 456799999999999999999999999999999999988888899999999999999999999999998877 456776
Q ss_pred cccCCCcc------------------c-----------------------------------------------------
Q 012896 99 YSHRDPSL------------------R----------------------------------------------------- 107 (454)
Q Consensus 99 ~~~~~~~~------------------~----------------------------------------------------- 107 (454)
++...... .
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 65422100 0
Q ss_pred -------------------cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHH
Q 012896 108 -------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQK 167 (454)
Q Consensus 108 -------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~ 167 (454)
.....+|||+|||+++++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011259999999999999999999999999999999996 89999999999999999999
Q ss_pred HHHHhcCceeCCceeEEecccccc
Q 012896 168 AIEKLNGMLLNDKQVYVGHFLRKQ 191 (454)
Q Consensus 168 a~~~l~~~~~~~~~l~v~~~~~~~ 191 (454)
|+..|+|..+.|+.|.|.+...+.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999877654
No 30
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.8e-26 Score=194.89 Aligned_cols=168 Identities=24% Similarity=0.483 Sum_probs=152.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
.|+|||+.+.+.+.|+.|+..|.+||+|++|.+.-|+.+++++|||||+|+-+|.|+.|++.||+..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred CCcc---------ccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCC-CCeeeEEEEEecCHHHHHHHHHHh
Q 012896 103 DPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKL 172 (454)
Q Consensus 103 ~~~~---------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~g~a~V~f~~~~~A~~a~~~l 172 (454)
-+.. +...-.+|||..+.++.++++|+..|+.||+|..|.+-..++ +..+||+|++|.+...-..|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 3221 112346899999999999999999999999999999999975 668999999999999999999999
Q ss_pred cCceeCCceeEEeccccc
Q 012896 173 NGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 173 ~~~~~~~~~l~v~~~~~~ 190 (454)
|-+.++|..++|..+...
T Consensus 273 NlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred chhhcccceEecccccCC
Confidence 999999999999766544
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=209.68 Aligned_cols=259 Identities=25% Similarity=0.409 Sum_probs=215.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
..+..+.++|+|||..+..++|.+.|..||.|..|.+.+ .|. .|+|+|.+..+|..|+..|....+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 456678999999999999999999999999999995542 232 59999999999999999999888888888776
Q ss_pred cccCCCcc--------------------------------cc----------------CCCcceeeecCCcccChHHHhh
Q 012896 99 YSHRDPSL--------------------------------RK----------------SGAGNIFIKNLDKAIDHKALHD 130 (454)
Q Consensus 99 ~~~~~~~~--------------------------------~~----------------~~~~~l~v~nlp~~~~~~~l~~ 130 (454)
|+..+... .+ ....+|||.||+++++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 65421000 00 0112399999999999999999
Q ss_pred hhcccCceeEEEEeeCCCCC----eeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccccch---hhhccCccc
Q 012896 131 TFSAFGNILSCKVATDLNGQ----SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD---TEINKSKFT 203 (454)
Q Consensus 131 ~f~~~g~v~~~~~~~~~~~~----~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~---~~~~~~~~~ 203 (454)
.|...|.|..+.|.+.+++. +.|||||+|.++++|+.|++.|+|..+.|+.|.+..+....... ........+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccc
Confidence 99999999999998876543 45999999999999999999999999999999998776222211 111222256
Q ss_pred eEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEEC-CCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccccc
Q 012896 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD-GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (454)
Q Consensus 204 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~ 282 (454)
.|+|.|+|...+-.+++.+|..||.+.++.++.. ..+.+||++||.|.+..+|.+|+.+|....+.||++.+.|+....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 8999999999999999999999999999999887 456789999999999999999999999999999999999998765
Q ss_pred H
Q 012896 283 E 283 (454)
Q Consensus 283 ~ 283 (454)
.
T Consensus 695 ~ 695 (725)
T KOG0110|consen 695 T 695 (725)
T ss_pred H
Confidence 5
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.5e-25 Score=184.69 Aligned_cols=168 Identities=35% Similarity=0.632 Sum_probs=153.9
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
..+|+|.-||..+|+++++.+|...|+|++|++++++ +|.+-||+||.|.+.++|.+|+..++|..+..+.|+|.++.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4679999999999999999999999999999999997 799999999999999999999999999999999999999987
Q ss_pred ccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 012896 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (454)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A 359 (454)
..... ...+|||.+||..+|..+|.++|++||.|..-+|+.|+ +|.+||.+||.|+...+|
T Consensus 121 Ss~~I------------------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 121 SSDSI------------------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred Chhhh------------------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 65532 23469999999999999999999999999999999998 899999999999999999
Q ss_pred HHHHHHcCCceecC--cceEEEEccchHHH
Q 012896 360 SRALLEMNGKMVVS--KPLYVALAQRKEDR 387 (454)
Q Consensus 360 ~~a~~~l~g~~~~g--~~l~v~~~~~~~~~ 387 (454)
+.||..|||..-.| .+|.|+|+......
T Consensus 183 e~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 183 EEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred HHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 99999999987655 69999999765443
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=4.3e-25 Score=215.87 Aligned_cols=176 Identities=30% Similarity=0.503 Sum_probs=151.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccc
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~ 279 (454)
..++|||+|||..+++++|.++|+.||.|..+.++.+. ++.++|||||+|.+.++|.+|+. +++..+.|+.+.+....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 35789999999999999999999999999999999875 58899999999999999999996 89999999999998765
Q ss_pred cccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHH
Q 012896 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~ 358 (454)
.......... .......+..++|||+|||..+++++|+++|++||.|..|.+..+. +|+++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAA------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhcc------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 4322211100 0001112236789999999999999999999999999999999987 57899999999999999
Q ss_pred HHHHHHHcCCceecCcceEEEEccc
Q 012896 359 ASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 359 A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
|.+|+..|||..|.|+.|+|.|+..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999763
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.93 E-value=8.7e-23 Score=177.01 Aligned_cols=343 Identities=18% Similarity=0.169 Sum_probs=257.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCcCCCCc
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML--NFTPLNGK 93 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~ 93 (454)
++.....+..|+|++|-..++|.+|.+.++.||+|..+..+..+. .|+|+|++.+.|+.++... +...+.|.
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCc
Confidence 344567889999999999999999999999999999999887543 7999999999999999853 34566788
Q ss_pred ceeeecccCCCcccc-----CCCcce--eeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHH
Q 012896 94 PIRVMYSHRDPSLRK-----SGAGNI--FIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166 (454)
Q Consensus 94 ~i~v~~~~~~~~~~~-----~~~~~l--~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~ 166 (454)
..-+.++..+...+. .....| .|-|--+.+|.+-|..+....|.|.+|.|++. + --.|.|+|.+.+.|+
T Consensus 98 ~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n---gVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N---GVQAMVEFDSVEVAQ 173 (494)
T ss_pred hhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-c---ceeeEEeechhHHHH
Confidence 888877754422221 122223 34455568999999999999999999999886 3 336999999999999
Q ss_pred HHHHHhcCceeC--CceeEEecccccccc-------------------------------hh------------------
Q 012896 167 KAIEKLNGMLLN--DKQVYVGHFLRKQER-------------------------------DT------------------ 195 (454)
Q Consensus 167 ~a~~~l~~~~~~--~~~l~v~~~~~~~~~-------------------------------~~------------------ 195 (454)
+|...|+|..|. .+.|.++.+.+.... ..
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 999999997663 455666544321100 00
Q ss_pred ---------------------------hhccCccceEEEeCCCCC-CCHHHHHHhhcccCCeeEEEEEECCCCCceeEEE
Q 012896 196 ---------------------------EINKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247 (454)
Q Consensus 196 ---------------------------~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~af 247 (454)
.....+...++|.+|... ++-+.|.++|..||.|..+.+++... |.|.
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtam 329 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAM 329 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeE
Confidence 000112245788888754 78899999999999999999998654 4799
Q ss_pred EEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHH---HH------H----------HHHHhhHHHhhhcCCceE
Q 012896 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LK------H----------QFEQNMKEAADKFQGANL 308 (454)
Q Consensus 248 v~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~---~~------~----------~~~~~~~~~~~~~~~~~l 308 (454)
|++.+..+.++|+..|++..+.|..|.+..++........ +. . ..........-.++++.|
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vL 409 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVL 409 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCccee
Confidence 9999999999999999999999999988877654321110 00 0 000111112234577889
Q ss_pred EEecCCCcCCHHHHHhccccCCC-ceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 012896 309 YIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (454)
Q Consensus 309 ~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g 373 (454)
+.-|.|..+||+.|.++|...+. ..++++...++.+ .--++++|++.++|..||..+|...|.+
T Consensus 410 HffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 410 HFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EEecCCCccCHHHHHHHhhhcCCCcceEEeecccccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 99999999999999999987653 5778888776433 2368999999999999999999988864
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=4e-24 Score=167.26 Aligned_cols=172 Identities=35% Similarity=0.642 Sum_probs=152.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
.....||||+||+..++++-|+++|-+.|+|.++.+.+++-+...+||||++|.+.|+|+-|++-|+..++.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34568999999999999999999999999999999999999988999999999999999999999999999999999988
Q ss_pred ccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeE-EEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 012896 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177 (454)
Q Consensus 100 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 177 (454)
+.... .......++||+||.+.+++..|.+.|+.||.+.. ..++.++ ++.+++++|+.|.+.+.+.+|+..+++..+
T Consensus 86 as~~~-~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 86 ASAHQ-KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred ccccc-ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 77322 22233478999999999999999999999998765 3556665 578899999999999999999999999999
Q ss_pred CCceeEEeccccccc
Q 012896 178 NDKQVYVGHFLRKQE 192 (454)
Q Consensus 178 ~~~~l~v~~~~~~~~ 192 (454)
.++.+.+..+..+..
T Consensus 165 ~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDT 179 (203)
T ss_pred cCCceEEEEEEecCC
Confidence 999999987765543
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=6.8e-24 Score=166.00 Aligned_cols=172 Identities=33% Similarity=0.543 Sum_probs=151.2
Q ss_pred cCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEec
Q 012896 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (454)
Q Consensus 199 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~ 277 (454)
.....+++++||+..++++.|.++|-+.|+|.+++++++. +...+||||++|.++++|.-|++-|+...+.|++|++..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4456789999999999999999999999999999999886 567899999999999999999999999999999999998
Q ss_pred cccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceE-EEEeeCC-CCCcceEEEEEeCC
Q 012896 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDP-SGISRGSGFVAFST 355 (454)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~-~~~~~g~afv~f~~ 355 (454)
+...... ...+-+|||+||.+.+++..|.+.|+.||.+.+ -+++++. +|+++|||||.|.+
T Consensus 86 as~~~~n-----------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 86 ASAHQKN-----------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred ccccccc-----------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 8722111 112346999999999999999999999998765 4778886 68999999999999
Q ss_pred HHHHHHHHHHcCCceecCcceEEEEccchHHH
Q 012896 356 PEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387 (454)
Q Consensus 356 ~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 387 (454)
.+.+.+|+..+||..++.+++.|.++..+..+
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999999999999999999999999765543
No 37
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.90 E-value=6.6e-22 Score=178.43 Aligned_cols=338 Identities=16% Similarity=0.221 Sum_probs=240.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
....-.|.+++|||++|++||++||+.| .|+++.+.+ .++++.|-|||+|.+.+++++|+++ +...+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 3455789999999999999999999999 578877766 4688999999999999999999995 87788888888877
Q ss_pred ccCCCc---------cccCCCcceeeecCCcccChHHHhhhhcccCceeE-EEEeeCCCCCeeeEEEEEecCHHHHHHHH
Q 012896 100 SHRDPS---------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVATDLNGQSKGYGFVQFDNEESAQKAI 169 (454)
Q Consensus 100 ~~~~~~---------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~a~V~f~~~~~A~~a~ 169 (454)
+...+. ........|.+++||+.+++++|.++|+..-.|.. +.++.+..+++.|-|||+|++.+.|+.|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 654322 11235678999999999999999999997755554 66777788889999999999999999999
Q ss_pred HHhcCceeCCceeEEecccccccc--------------------------------------------------------
Q 012896 170 EKLNGMLLNDKQVYVGHFLRKQER-------------------------------------------------------- 193 (454)
Q Consensus 170 ~~l~~~~~~~~~l~v~~~~~~~~~-------------------------------------------------------- 193 (454)
.. |...+.-|.|.|-.+......
T Consensus 163 ~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~ 241 (510)
T KOG4211|consen 163 GR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPS 241 (510)
T ss_pred HH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcc
Confidence 84 445555555555221100000
Q ss_pred --------------hhhhcc----------------Cc-cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCc
Q 012896 194 --------------DTEINK----------------SK-FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKS 242 (454)
Q Consensus 194 --------------~~~~~~----------------~~-~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~ 242 (454)
+..... .. ...+..++||...+..+|.++|+..-.+ .+.+....+++.
T Consensus 242 ~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~ 320 (510)
T KOG4211|consen 242 LQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRA 320 (510)
T ss_pred ccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCcc
Confidence 000000 00 0346778999999999999999987665 677777788999
Q ss_pred eeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHH-H-----------H--------HHH--------H
Q 012896 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL-K-----------H--------QFE--------Q 294 (454)
Q Consensus 243 ~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~-~-----------~--------~~~--------~ 294 (454)
.|-|.|+|.+.++|..|+.. ++..+..+.+..-............ . . +.. .
T Consensus 321 TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~ 399 (510)
T KOG4211|consen 321 TGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGR 399 (510)
T ss_pred CCcceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCccc
Confidence 99999999999999999852 3333444433322211110000000 0 0 000 0
Q ss_pred h----------------------hHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEE
Q 012896 295 N----------------------MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352 (454)
Q Consensus 295 ~----------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~ 352 (454)
. ............+..+++|...++.++.++|.+++ ...|.+..|++....+-|-|.
T Consensus 400 ~~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~-~a~~~~~yd~~~~~~~~a~~~ 478 (510)
T KOG4211|consen 400 GSPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIR-PAQVELLYDHQFQRSGDARVI 478 (510)
T ss_pred cCCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccC-cccccccccccccccCceeEE
Confidence 0 00001111223577889999999999999999985 457889999887778899999
Q ss_pred eCCHHHHHHHHHH
Q 012896 353 FSTPEEASRALLE 365 (454)
Q Consensus 353 f~~~~~A~~a~~~ 365 (454)
|.+.++++.|+.+
T Consensus 479 ~~~~~~~q~a~~~ 491 (510)
T KOG4211|consen 479 FYNRKDYQDALMK 491 (510)
T ss_pred EechhhhHHHHHh
Confidence 9999999999843
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=3.8e-23 Score=173.60 Aligned_cols=146 Identities=24% Similarity=0.523 Sum_probs=137.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccH
Q 012896 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283 (454)
Q Consensus 204 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~ 283 (454)
.|||+|||...++.+|+.+|++||.|.+|.|+.. |+||..++...+..|+..|++..++|..|.|..++.++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 5899999999999999999999999999999954 999999999999999999999999999999988876522
Q ss_pred HHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 012896 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (454)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~ 363 (454)
.+++|+|+||.+.++.++|++.|.+||+|.+|+|+++ |+||.|+-.++|..|+
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHH
Confidence 3678999999999999999999999999999999887 9999999999999999
Q ss_pred HHcCCceecCcceEEEEccc
Q 012896 364 LEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 364 ~~l~g~~~~g~~l~v~~~~~ 383 (454)
..|+|.+|.|++|+|+++..
T Consensus 130 r~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 130 RGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred hcccccccccceeeeeeecc
Confidence 99999999999999998864
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=8.5e-23 Score=171.50 Aligned_cols=153 Identities=25% Similarity=0.505 Sum_probs=141.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
-+|||+|||..+++.+|+.+|++||+|+++.|+++ |+||-.++++.|..|+..|++..+.|..|.|+.++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 9999999999999999999999999999999988876
Q ss_pred CccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeE
Q 012896 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (454)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~ 183 (454)
. ..+.+|+|+||.+.++.++|+..|++||+|.+|+|+++ |+||.|...++|..|++.|++..+.|+.+.
T Consensus 75 s----k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 S----KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred C----CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceee
Confidence 2 23568999999999999999999999999999999976 999999999999999999999999999999
Q ss_pred Eecccccccchh
Q 012896 184 VGHFLRKQERDT 195 (454)
Q Consensus 184 v~~~~~~~~~~~ 195 (454)
|+...++-....
T Consensus 144 vq~stsrlrtap 155 (346)
T KOG0109|consen 144 VQLSTSRLRTAP 155 (346)
T ss_pred eeeeccccccCC
Confidence 988776654433
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=8.3e-22 Score=163.40 Aligned_cols=186 Identities=33% Similarity=0.505 Sum_probs=156.2
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCC-C--CceEEEec
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-D--DKEWYVGK 277 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~--g~~~~v~~ 277 (454)
..++|||+-|.+.-.|+|++.+|..||.+.+|.+.+..++.++|++||.|.+..+|..|+..|+|... . ...+.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999998663 3 34677777
Q ss_pred cccccHHHHHHHHHHH--------------------------------------------------H-------------
Q 012896 278 AQKKSERELELKHQFE--------------------------------------------------Q------------- 294 (454)
Q Consensus 278 ~~~~~~~~~~~~~~~~--------------------------------------------------~------------- 294 (454)
+....++......... +
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 7655433211100000 0
Q ss_pred --------------------------------------------------------------------------------
Q 012896 295 -------------------------------------------------------------------------------- 294 (454)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (454)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred -----------------hhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCH
Q 012896 295 -----------------NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356 (454)
Q Consensus 295 -----------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~ 356 (454)
-.....+.+++|+|||..||.++.+.+|.++|-+||.|.+.++..|+ ++++++|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00012344567899999999999999999999999999999999997 899999999999999
Q ss_pred HHHHHHHHHcCCceecCcceEEEEccchHH
Q 012896 357 EEASRALLEMNGKMVVSKPLYVALAQRKED 386 (454)
Q Consensus 357 ~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~ 386 (454)
.+|+.||.++||..|.=++|+|.+.++++.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999988764
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.9e-21 Score=172.97 Aligned_cols=167 Identities=22% Similarity=0.382 Sum_probs=145.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCcCC--CCcce
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPL--NGKPI 95 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G-~v~~v~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~i 95 (454)
...+++|||+|||..-++++|++-|++.+ -|..|.+++.+.. +++||||||+|.+...|..|..+|-...| .|..+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 35679999999999999999999999997 4778888876654 56999999999999999999999865544 69999
Q ss_pred eeecccCCCcccc---CCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 012896 96 RVMYSHRDPSLRK---SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172 (454)
Q Consensus 96 ~v~~~~~~~~~~~---~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 172 (454)
.|.|+.+...... +.-+.|||+||+.++|++.|+.+|++||.|++|+.++| ||||.|.+.++|.+|++.+
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHh
Confidence 9999987644332 34568999999999999999999999999999999877 9999999999999999999
Q ss_pred cCceeCCceeEEecccccccc
Q 012896 173 NGMLLNDKQVYVGHFLRKQER 193 (454)
Q Consensus 173 ~~~~~~~~~l~v~~~~~~~~~ 193 (454)
++..+.|..|.|..+.+..+.
T Consensus 314 ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 314 NGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred cCceecCceEEEEecCChhhh
Confidence 999999999999887765443
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.85 E-value=8.1e-21 Score=168.15 Aligned_cols=249 Identities=20% Similarity=0.244 Sum_probs=206.1
Q ss_pred CCcceeeecCCcccChHHHhhhhc-ccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccc
Q 012896 110 GAGNIFIKNLDKAIDHKALHDTFS-AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (454)
Q Consensus 110 ~~~~l~v~nlp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~ 188 (454)
..+.+||+|||+++.+.+|++++. +-|+|..|.++.|.+++.+|+|.|+|+++|.+++|++.|+...+.||.|.+....
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345699999999999999999996 5689999999999999999999999999999999999999999999999997654
Q ss_pred ccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCC
Q 012896 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF 268 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 268 (454)
..+..........-.+.|+.++....-...+...|.--|.+....+.++.+..+++..+++|.+.-.+..++..+.....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 43333222222233567888998888888888888888877777777888889999999999987777777765444444
Q ss_pred CCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceE
Q 012896 269 DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348 (454)
Q Consensus 269 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~ 348 (454)
..+.++. +.. +...++||.||...+..+.|.+.|.--|.|+.+.+-.|+.|.++|+
T Consensus 203 Flr~~h~-f~p-----------------------Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~ 258 (608)
T KOG4212|consen 203 FLRSLHI-FSP-----------------------PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGF 258 (608)
T ss_pred hhhhccC-CCC-----------------------CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCe
Confidence 4444443 222 2345699999999999999999999999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 349 afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
|.++|.++-+|..||..|++.-+..+++.+.+.+
T Consensus 259 ~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 259 AVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred eEEEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 9999999999999999999877777777777643
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.2e-20 Score=161.67 Aligned_cols=270 Identities=21% Similarity=0.410 Sum_probs=214.2
Q ss_pred cceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccccc
Q 012896 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 112 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~ 190 (454)
+++||+.|.+++.++.|+..|..||+|.+|.+..|+ ++..+||+||+|+-+|.|..|++.||+..++||.|.|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 579999999999999999999999999999999996 7999999999999999999999999999999999999755443
Q ss_pred ccchhhh-----ccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCC-CCceeEEEEEeCChHHHHHHHHHHc
Q 012896 191 QERDTEI-----NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALN 264 (454)
Q Consensus 191 ~~~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~ 264 (454)
......+ .....++++|..+.++.+++||+..|+.||.|.+|.+-+..+ +.++||+|++|.+..+...|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 3333222 223467899999999999999999999999999999999875 6789999999999999999999999
Q ss_pred CCCCCCceEEEeccccccHHHHH-------------------HHHHHHHh------------------------------
Q 012896 265 GKKFDDKEWYVGKAQKKSERELE-------------------LKHQFEQN------------------------------ 295 (454)
Q Consensus 265 ~~~~~g~~~~v~~~~~~~~~~~~-------------------~~~~~~~~------------------------------ 295 (454)
-..++|..++|..+-.+...... .+......
T Consensus 274 lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~ 353 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLP 353 (544)
T ss_pred hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCcc
Confidence 99999999999877554321100 00000000
Q ss_pred --------------------------------------------------hH----------------------------
Q 012896 296 --------------------------------------------------MK---------------------------- 297 (454)
Q Consensus 296 --------------------------------------------------~~---------------------------- 297 (454)
..
T Consensus 354 qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sAR 433 (544)
T KOG0124|consen 354 QAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSAR 433 (544)
T ss_pred ccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHH
Confidence 00
Q ss_pred -----HHhhhcCCceEEEecCC--CcCC---HHHHHhccccCCCceEEEEeeCCCCCc-----ceEEEEEeCCHHHHHHH
Q 012896 298 -----EAADKFQGANLYIKNLD--DSID---DEKLKQLFSPFGSITSCKVMRDPSGIS-----RGSGFVAFSTPEEASRA 362 (454)
Q Consensus 298 -----~~~~~~~~~~l~v~nl~--~~~~---~~~l~~~f~~~g~v~~~~~~~~~~~~~-----~g~afv~f~~~~~A~~a 362 (454)
.-.....++.+.++|+- .+++ +.+|++.+++||.|.+|-|.....+.. ----||+|....++.+|
T Consensus 434 hlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ra 513 (544)
T KOG0124|consen 434 HLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRA 513 (544)
T ss_pred HHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHH
Confidence 00001123457778873 3444 468999999999999998877654321 12479999999999999
Q ss_pred HHHcCCceecCcceEEEEc
Q 012896 363 LLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 363 ~~~l~g~~~~g~~l~v~~~ 381 (454)
..+|+|+.|.|+++.....
T Consensus 514 k~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 514 KQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHhhccceecCceeehhhh
Confidence 9999999999999876544
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.81 E-value=3.1e-18 Score=154.91 Aligned_cols=265 Identities=20% Similarity=0.252 Sum_probs=193.5
Q ss_pred CcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccccc
Q 012896 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 111 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~ 190 (454)
..-|.+.+|||++|+++|.++|+.+ .|..+.+.. .++++.|-|||+|.+.++++.|++ .+...+..+.|.|-.....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 4468889999999999999999988 566654443 468889999999999999999998 5778888898888655433
Q ss_pred ccchh-----hhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeE-EEEEECCCCCceeEEEEEeCChHHHHHHHHHHc
Q 012896 191 QERDT-----EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264 (454)
Q Consensus 191 ~~~~~-----~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 264 (454)
+.... .........+.+.+||+.++++||.++|+..-.+.. +.++.+..+++.|-|||+|.+.+.|++|+. -+
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 22111 111124567899999999999999999998876665 556666778899999999999999999996 45
Q ss_pred CCCCCCceEEEeccccccHHHHHHHH--------HHH----------------------------------------Hh-
Q 012896 265 GKKFDDKEWYVGKAQKKSERELELKH--------QFE----------------------------------------QN- 295 (454)
Q Consensus 265 ~~~~~g~~~~v~~~~~~~~~~~~~~~--------~~~----------------------------------------~~- 295 (454)
...+..+.|.|-.+............ ++. ..
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 56666666666554433222111000 000 00
Q ss_pred ----------------------hHHH----hhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEE
Q 012896 296 ----------------------MKEA----ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349 (454)
Q Consensus 296 ----------------------~~~~----~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a 349 (454)
.... ........++.++||...++.++..+|+.. ....|+|...++|+..|-|
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~dGr~TGEA 324 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGPDGRATGEA 324 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCCCCccCCcc
Confidence 0000 000112458889999999999999999986 4448888888899999999
Q ss_pred EEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 350 fv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
+|+|.|.+||..|+ .-++..+..+-|.+..-
T Consensus 325 dveF~t~edav~Am-skd~anm~hrYVElFln 355 (510)
T KOG4211|consen 325 DVEFATGEDAVGAM-GKDGANMGHRYVELFLN 355 (510)
T ss_pred eeecccchhhHhhh-ccCCcccCcceeeeccc
Confidence 99999999999998 55666777777766543
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.6e-19 Score=139.07 Aligned_cols=149 Identities=19% Similarity=0.368 Sum_probs=127.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
...+++|||+|||.++.|.+|.++|-+||.|.+|.+..- ...-+||||+|++..+|+.|+.--++..++|..|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 356799999999999999999999999999999988542 22346999999999999999999999999999999999
Q ss_pred ccCCCcc------------------------ccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEE
Q 012896 100 SHRDPSL------------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYG 155 (454)
Q Consensus 100 ~~~~~~~------------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a 155 (454)
+...... ......+|.|.+||++-++++|++++...|.|....+.++ +.+
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~G 153 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVG 153 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cce
Confidence 8754211 1122357999999999999999999999999988888775 378
Q ss_pred EEEecCHHHHHHHHHHhcCcee
Q 012896 156 FVQFDNEESAQKAIEKLNGMLL 177 (454)
Q Consensus 156 ~V~f~~~~~A~~a~~~l~~~~~ 177 (454)
.|+|...|+.+.|+..|....+
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeehhhHHHHHHhhccccc
Confidence 9999999999999998876543
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=6e-18 Score=149.04 Aligned_cols=250 Identities=19% Similarity=0.250 Sum_probs=194.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC--Ccceee
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN--GKPIRV 97 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~i~v 97 (454)
+..--+++|.|+-+.++-+.|+++|++||.|..|.-+.+. +.=.|+|+|.+.+.|+.|...|++..|. .++++|
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 3444577899999999999999999999999988777642 2236999999999999999999999885 355777
Q ss_pred ecccCC----------------Ccccc-------------------------------------------C--CCcceee
Q 012896 98 MYSHRD----------------PSLRK-------------------------------------------S--GAGNIFI 116 (454)
Q Consensus 98 ~~~~~~----------------~~~~~-------------------------------------------~--~~~~l~v 116 (454)
.+++-. +.... . ....|.|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 776510 00000 0 0245777
Q ss_pred ecCCc-ccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccccc--
Q 012896 117 KNLDK-AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER-- 193 (454)
Q Consensus 117 ~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~-- 193 (454)
.||.. .+|.+.|..+|.-||.|.+|+|+.++. -.|+|++.+...|..|+++|+|..+.|+.|++.......-.
T Consensus 303 snln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred ecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence 78765 689999999999999999999998742 36999999999999999999999999999999655321110
Q ss_pred ---hhh------------------------hccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEE
Q 012896 194 ---DTE------------------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFG 246 (454)
Q Consensus 194 ---~~~------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a 246 (454)
..+ .--+++.++..+|+|.+++++++++.|...|...+...... +.+-++
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kma 455 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMA 455 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCccee
Confidence 000 01134568999999999999999999999987655554433 345589
Q ss_pred EEEeCChHHHHHHHHHHcCCCCCCc-eEEEecccc
Q 012896 247 FVNFENSDDAARAVEALNGKKFDDK-EWYVGKAQK 280 (454)
Q Consensus 247 fv~f~~~~~a~~a~~~l~~~~~~g~-~~~v~~~~~ 280 (454)
++.+.+.|+|..|+..++.+.+++. .++|++++.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999998988888655 889988764
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=7.3e-19 Score=156.01 Aligned_cols=169 Identities=27% Similarity=0.455 Sum_probs=149.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
..++|+|++|+|+++++.|++.|.+||.|.++.+++|+.+++++||.||+|.+.+....++.. ....++|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 789999999999999999999999999999999999999999999999999999999999984 5678999999988776
Q ss_pred CCCccccC----CCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 102 RDPSLRKS----GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 102 ~~~~~~~~----~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
........ ....+||++||.++++.++++.|.+||.|..+.++.+. ..+.++|+||.|.+++.+..++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 54332222 35689999999999999999999999999999888885 68899999999999999999887 57789
Q ss_pred eCCceeEEeccccccc
Q 012896 177 LNDKQVYVGHFLRKQE 192 (454)
Q Consensus 177 ~~~~~l~v~~~~~~~~ 192 (454)
+.++.+.|..+.++..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999977766544
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=9.8e-18 Score=137.46 Aligned_cols=158 Identities=23% Similarity=0.470 Sum_probs=135.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHH----HHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 21 FGTTSLYVGDLEANVTDSQLYD----LFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~----~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
.++.||||.||+..+..++|+. +|++||.|..|...+ +.+.+|.|||.|.+.+.|..|+..|+|..|.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999888 999999999998875 567899999999999999999999999999999999
Q ss_pred eecccCCCccc------------------------------------------------cCCCcceeeecCCcccChHHH
Q 012896 97 VMYSHRDPSLR------------------------------------------------KSGAGNIFIKNLDKAIDHKAL 128 (454)
Q Consensus 97 v~~~~~~~~~~------------------------------------------------~~~~~~l~v~nlp~~~~~~~l 128 (454)
|.+++.+.... ......+++.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 99987542110 123456899999999999999
Q ss_pred hhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CceeEEe
Q 012896 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVG 185 (454)
Q Consensus 129 ~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-~~~l~v~ 185 (454)
..+|.+|....+++++... ++.|||+|.+...|..|...+++..+. ...+.+.
T Consensus 164 ~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred HHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 9999999999999998753 668999999999999999999988776 5555553
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=6.2e-19 Score=161.59 Aligned_cols=176 Identities=24% Similarity=0.433 Sum_probs=147.2
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
.+++|+..+....++.+|.++|+..|.|..+.++.+. .++++|.+||+|.+.+....|+ .|.|.-+.|.++.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 4667788888888999999999999999999999886 6889999999999999999998 5999999999999988765
Q ss_pred ccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 012896 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (454)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A 359 (454)
............ +. .....+-..|||+||.+++++++|+.+|++||.|..|.+..|. +|+++||+||+|.+.++|
T Consensus 258 eknr~a~~s~a~-~~---k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 258 EKNRAANASPAL-QG---KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHhccccc-cc---cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 443321111100 00 0001122239999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHHcCCceecCcceEEEEcc
Q 012896 360 SRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 360 ~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+|++.|||.+|.|+.|+|....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHhccceecCceEEEEEee
Confidence 99999999999999999998664
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=5.5e-18 Score=140.88 Aligned_cols=169 Identities=31% Similarity=0.443 Sum_probs=144.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC---CCcceee
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL---NGKPIRV 97 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~i~v 97 (454)
-..|+|||+.|...-.|+|++.+|..||.+.++.+.+.. .+.++|||||.|.+..+|+.|+..|++..- -...+.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367999999999999999999999999999999999874 688999999999999999999999997543 2466778
Q ss_pred ecccCCCc------------------------------------------------------------------------
Q 012896 98 MYSHRDPS------------------------------------------------------------------------ 105 (454)
Q Consensus 98 ~~~~~~~~------------------------------------------------------------------------ 105 (454)
++++.++.
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 77751100
Q ss_pred --------------------------------------------------------------------------------
Q 012896 106 -------------------------------------------------------------------------------- 105 (454)
Q Consensus 106 -------------------------------------------------------------------------------- 105 (454)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred ------------------------cccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEec
Q 012896 106 ------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFD 160 (454)
Q Consensus 106 ------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~ 160 (454)
....+.++|||..||.+..+.||.+.|-.||.|.+.+++.|. ++.++.|+||.|.
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 000123579999999999999999999999999999999995 7889999999999
Q ss_pred CHHHHHHHHHHhcCceeCCceeEEeccccc
Q 012896 161 NEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 161 ~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~ 190 (454)
++.+|+.|+..|||+.|+=+++.|....++
T Consensus 336 Np~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred CchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 999999999999999999888888654443
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=2e-18 Score=153.29 Aligned_cols=174 Identities=26% Similarity=0.444 Sum_probs=149.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccc
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~ 279 (454)
....++|++|++.++++.|++.|.+||.|..+.++++. +++++||+||+|.+.+....++. ...+.++++.+....+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45689999999999999999999999999999999986 69999999999999998888875 46677999999988887
Q ss_pred cccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHH
Q 012896 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~ 358 (454)
+.......... ....++||++||..++++++++.|.+||.|..+.++.|. +.+.+||+||.|.+++.
T Consensus 84 ~r~~~~~~~~~------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGRH------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Ccccccccccc------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 76543222111 134579999999999999999999999999999988886 78899999999999888
Q ss_pred HHHHHHHcCCceecCcceEEEEccchHHHH
Q 012896 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRR 388 (454)
Q Consensus 359 A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~ 388 (454)
+.+++ ...-..|+|+.+.|..|.+++...
T Consensus 152 Vdkv~-~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 152 VDKVT-LQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceec-ccceeeecCceeeEeeccchhhcc
Confidence 88887 677789999999999998877543
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1.6e-17 Score=133.12 Aligned_cols=81 Identities=35% Similarity=0.565 Sum_probs=76.6
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 46789999999999999999999999999999999986 78999999999999999999999999999999999999997
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
.+
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 54
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=5.2e-17 Score=151.30 Aligned_cols=259 Identities=22% Similarity=0.401 Sum_probs=198.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcC-----------C-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQM-----------G-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~-----------G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 82 (454)
-......+.+.++|+++|..++++.+..+|+.- | .+..+.+...+ ++||++|.+.++|..++
T Consensus 167 ~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~ 240 (500)
T KOG0120|consen 167 MDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM 240 (500)
T ss_pred cCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh
Confidence 344556788999999999999999999999753 2 36666665543 49999999999999999
Q ss_pred HHhCCcCCCCcceeeecccCCCc---------------------cccCCCcceeeecCCcccChHHHhhhhcccCceeEE
Q 012896 83 EMLNFTPLNGKPIRVMYSHRDPS---------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141 (454)
Q Consensus 83 ~~l~~~~~~g~~i~v~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~ 141 (454)
. +++..|.|.++++.-...... ........++|++||..++++.+.++...||++...
T Consensus 241 ~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f 319 (500)
T KOG0120|consen 241 A-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAF 319 (500)
T ss_pred c-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhh
Confidence 9 688889999988854332210 111234679999999999999999999999999999
Q ss_pred EEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccccchhhhcc------------------Ccc
Q 012896 142 KVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK------------------SKF 202 (454)
Q Consensus 142 ~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~~~~------------------~~~ 202 (454)
.++++. ++.++||+|.+|.++.....|+..|+|+.+.+..+.+..+............ .+.
T Consensus 320 ~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t 399 (500)
T KOG0120|consen 320 RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPT 399 (500)
T ss_pred eeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcc
Confidence 999995 5899999999999999999999999999999999998766543322111111 111
Q ss_pred ceEEEeCCC--CCC-CH-------HHHHHhhcccCCeeEEEEEEC-C---CCCceeEEEEEeCChHHHHHHHHHHcCCCC
Q 012896 203 TNVYVKNLS--EST-TE-------EDLQKSFGEYGTITSAVVMRD-G---DGKSKCFGFVNFENSDDAARAVEALNGKKF 268 (454)
Q Consensus 203 ~~l~v~nl~--~~~-t~-------~~l~~~f~~~g~v~~~~~~~~-~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 268 (454)
..|++.|+= .+. .+ ++++..+++||.|..|.+.+. . .....|-.||+|.+.++++.|+..|+|.++
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 222222220 000 11 556667889999999998877 3 244567789999999999999999999999
Q ss_pred CCceEEEecccc
Q 012896 269 DDKEWYVGKAQK 280 (454)
Q Consensus 269 ~g~~~~v~~~~~ 280 (454)
.++.+...+...
T Consensus 480 ~nRtVvtsYyde 491 (500)
T KOG0120|consen 480 ANRTVVASYYDE 491 (500)
T ss_pred CCcEEEEEecCH
Confidence 999998887653
No 54
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.73 E-value=1.9e-15 Score=131.75 Aligned_cols=244 Identities=20% Similarity=0.249 Sum_probs=187.6
Q ss_pred CCCCCCcEEEEc--CCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC--Cc
Q 012896 18 ANQFGTTSLYVG--DLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN--GK 93 (454)
Q Consensus 18 ~~~~~~~~l~V~--nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~ 93 (454)
....++..|++. |-=+.+|-+.|+.+|.++|+|..|.|+++ ++- .|.|+|.+.+.|++|.+.||+..|. ..
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccce
Confidence 334455555554 44477999999999999999999999985 343 7999999999999999999999885 56
Q ss_pred ceeeecccCCCc----------------c--------c------------------------------------------
Q 012896 94 PIRVMYSHRDPS----------------L--------R------------------------------------------ 107 (454)
Q Consensus 94 ~i~v~~~~~~~~----------------~--------~------------------------------------------ 107 (454)
+++|+++++... . .
T Consensus 190 TLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~ 269 (494)
T KOG1456|consen 190 TLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYR 269 (494)
T ss_pred eEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCc
Confidence 789988873210 0 0
Q ss_pred --------------cCCCcceeeecCCc-ccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 012896 108 --------------KSGAGNIFIKNLDK-AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172 (454)
Q Consensus 108 --------------~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 172 (454)
......++|.+|.. .+..+.|.++|-.||.|++|++++.+ .|.|.|++.+....++|+.+|
T Consensus 270 ~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hL 345 (494)
T KOG1456|consen 270 DGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHL 345 (494)
T ss_pred cccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHh
Confidence 00112478888876 45778899999999999999999985 457999999999999999999
Q ss_pred cCceeCCceeEEecccccc-------------------------------cchhhhccCccceEEEeCCCCCCCHHHHHH
Q 012896 173 NGMLLNDKQVYVGHFLRKQ-------------------------------ERDTEINKSKFTNVYVKNLSESTTEEDLQK 221 (454)
Q Consensus 173 ~~~~~~~~~l~v~~~~~~~-------------------------------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 221 (454)
++..+.|.+|.+......- ......-+.+++.|..-|.|..+|++.+..
T Consensus 346 nn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~ 425 (494)
T KOG1456|consen 346 NNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIG 425 (494)
T ss_pred ccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHH
Confidence 9999999998885432110 011112344667889999999999999999
Q ss_pred hhcccCC-eeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCc
Q 012896 222 SFGEYGT-ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271 (454)
Q Consensus 222 ~f~~~g~-v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 271 (454)
+|...+. -.++.+.+.++.++ ..+.++|++.++|..|+..++...+.+.
T Consensus 426 i~nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 426 ICNEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred HhhhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccCC
Confidence 9987653 45677776664333 2579999999999999999988887654
No 55
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=5.9e-17 Score=141.56 Aligned_cols=288 Identities=16% Similarity=0.163 Sum_probs=201.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
.....+..|..++|||..++.+|-.+|.-...............++..|++.|.|.|.+.-+.|+++ +.....++.+.|
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryiev 133 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEV 133 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceee
Confidence 3344567888999999999999999998542222212222224566678999999999999999996 667777888888
Q ss_pred ecccCCC--------------ccccCCCcceeeecCCcccChHHHhhhhcc----cCceeEEEEeeCCCCCeeeEEEEEe
Q 012896 98 MYSHRDP--------------SLRKSGAGNIFIKNLDKAIDHKALHDTFSA----FGNILSCKVATDLNGQSKGYGFVQF 159 (454)
Q Consensus 98 ~~~~~~~--------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~----~g~v~~~~~~~~~~~~~~g~a~V~f 159 (454)
..+..+. ...+.+.--|.+++||++++..++.++|.. -|..+.+-++..++++..|-|||.|
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 7665432 112233345778999999999999999962 2466788888888999999999999
Q ss_pred cCHHHHHHHHHHhcCceeCCceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCC
Q 012896 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239 (454)
Q Consensus 160 ~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~ 239 (454)
..+++|..|+.+ |...++.|.|.+- ..|..++......+-.- -++...
T Consensus 214 a~ee~aq~aL~k-hrq~iGqRYIElF---------------------------RSTaaEvqqvlnr~~s~---pLi~~~- 261 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQRYIELF---------------------------RSTAAEVQQVLNREVSE---PLIPGL- 261 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHHHHHHH---------------------------HHhHHHHHHHHHhhccc---cccCCC-
Confidence 999999999985 3334444443331 11223333333222100 000000
Q ss_pred CCceeEEEEEeCChHHHHHHHHHHcCCC-CC-CceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcC
Q 012896 240 GKSKCFGFVNFENSDDAARAVEALNGKK-FD-DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI 317 (454)
Q Consensus 240 ~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~-g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 317 (454)
+.. +. +....+.. .....+|.+++||+..
T Consensus 262 -------------------------~sp~~p~~p~~~~p~------------------------~~~kdcvRLRGLPy~A 292 (508)
T KOG1365|consen 262 -------------------------TSPLLPGGPARLVPP------------------------TRSKDCVRLRGLPYEA 292 (508)
T ss_pred -------------------------CCCCCCCCccccCCC------------------------CCCCCeeEecCCChhh
Confidence 000 00 00101111 1124579999999999
Q ss_pred CHHHHHhccccCCC-ceE--EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchHHH
Q 012896 318 DDEKLKQLFSPFGS-ITS--CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387 (454)
Q Consensus 318 ~~~~l~~~f~~~g~-v~~--~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 387 (454)
+.++|.++|..|.. |.. |++..+..|+..|-|||+|.+.++|..|...-|+....+|.|.|--+...+..
T Consensus 293 tvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 293 TVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred hHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 99999999998873 444 88999999999999999999999999999999988888999999887766554
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=8.5e-17 Score=128.94 Aligned_cols=85 Identities=35% Similarity=0.585 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
...+++|||+|||++++|++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.|++..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 012896 100 SHRDP 104 (454)
Q Consensus 100 ~~~~~ 104 (454)
+...+
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87653
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=7.7e-17 Score=150.18 Aligned_cols=270 Identities=19% Similarity=0.349 Sum_probs=199.9
Q ss_pred CCcceeeecCCcccChHHHhhhhccc-----------C-ceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 012896 110 GAGNIFIKNLDKAIDHKALHDTFSAF-----------G-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177 (454)
Q Consensus 110 ~~~~l~v~nlp~~~~~~~l~~~f~~~-----------g-~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 177 (454)
....++|+++|+.+.++....+|..- | .+..+.+... +++++++|.+.++|..++. +++..+
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~-----~nfa~ie~~s~~~at~~~~-~~~~~f 247 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE-----KNFAFIEFRSISEATEAMA-LDGIIF 247 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc-----ccceeEEecCCCchhhhhc-ccchhh
Confidence 35679999999999999998888643 2 3556666544 7799999999999999997 677777
Q ss_pred CCceeEEecccccccchhh-----------------hccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-C
Q 012896 178 NDKQVYVGHFLRKQERDTE-----------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-D 239 (454)
Q Consensus 178 ~~~~l~v~~~~~~~~~~~~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~ 239 (454)
.|..+.+............ ........+++++||...+++++.++...||.+....+..+. +
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 8877766433332221110 111223568999999999999999999999999999888876 4
Q ss_pred CCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHH------HHHhhHHHhhhcCCceEEEecC
Q 012896 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ------FEQNMKEAADKFQGANLYIKNL 313 (454)
Q Consensus 240 ~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~nl 313 (454)
+.++||+|.+|.+......|+..++|..+.+..+.+..+............. .-.....+....+...|.+.|+
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~ 407 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV 407 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhc
Confidence 7899999999999999999999999999999999998876544332221110 0000001222333444555554
Q ss_pred C--CcC-CH-------HHHHhccccCCCceEEEEeeC-CC---CCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 314 D--DSI-DD-------EKLKQLFSPFGSITSCKVMRD-PS---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 314 ~--~~~-~~-------~~l~~~f~~~g~v~~~~~~~~-~~---~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
- .+. .+ |+++.-+++||.|.+|.++++ .+ .-..|..||+|.+.+++++|.++|+|+.|.|+.|...
T Consensus 408 Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvts 487 (500)
T KOG0120|consen 408 VTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVAS 487 (500)
T ss_pred CCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEE
Confidence 2 111 11 577788899999999999988 33 3346789999999999999999999999999999999
Q ss_pred EccchH
Q 012896 380 LAQRKE 385 (454)
Q Consensus 380 ~~~~~~ 385 (454)
|.....
T Consensus 488 YydeDk 493 (500)
T KOG0120|consen 488 YYDEDK 493 (500)
T ss_pred ecCHHH
Confidence 987544
No 58
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=3.3e-16 Score=128.55 Aligned_cols=177 Identities=23% Similarity=0.379 Sum_probs=144.4
Q ss_pred CccceEEEeCCCCCCCHHHHHH----hhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEE
Q 012896 200 SKFTNVYVKNLSESTTEEDLQK----SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYV 275 (454)
Q Consensus 200 ~~~~~l~v~nl~~~~t~~~l~~----~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v 275 (454)
.++.+|+|.||+..+..++++. +|++||.|..|.... +.+.||-|||.|.+.+.|..|+.+|+|..+.|+.+++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 3445999999999999999888 999999998877653 4678999999999999999999999999999999999
Q ss_pred eccccccHHHHHHHHHH------------H---Hhh---H--------------HHhhhcCCceEEEecCCCcCCHHHHH
Q 012896 276 GKAQKKSERELELKHQF------------E---QNM---K--------------EAADKFQGANLYIKNLDDSIDDEKLK 323 (454)
Q Consensus 276 ~~~~~~~~~~~~~~~~~------------~---~~~---~--------------~~~~~~~~~~l~v~nl~~~~~~~~l~ 323 (454)
.++.............. . +.. . .....++...+++.|||.+++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99987654332211000 0 000 0 01224566789999999999999999
Q ss_pred hccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec-CcceEEEEcc
Q 012896 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQ 382 (454)
Q Consensus 324 ~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~~~ 382 (454)
.+|.+|...++++++.. ..+.|||+|.+...|..|...|.|..|- ...|+|.+++
T Consensus 165 ~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999886 3568999999999999999999999886 8899998875
No 59
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=6.9e-16 Score=125.16 Aligned_cols=155 Identities=20% Similarity=0.348 Sum_probs=119.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE-EecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC---Cccee
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN---GKPIR 96 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i~ 96 (454)
..-|||||.+||.|+...||+-+|+.|--.+...+ +.++.....+-+|||.|.+.++|..|++.|||..|+ +.+++
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34699999999999999999999999843333333 333333334579999999999999999999999996 78899
Q ss_pred eecccCCCcccc--------------------------------------------------------------------
Q 012896 97 VMYSHRDPSLRK-------------------------------------------------------------------- 108 (454)
Q Consensus 97 v~~~~~~~~~~~-------------------------------------------------------------------- 108 (454)
|.+++.+.....
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 988764311000
Q ss_pred ----------------CCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 012896 109 ----------------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172 (454)
Q Consensus 109 ----------------~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 172 (454)
....+|||.||.+++++++|+.+|+.|.....+++.. +.|. ..+|++|++.+.|..|+..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g~--~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGGM--PVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCCc--ceEeecHHHHHHHHHHHHHh
Confidence 0113699999999999999999999997665555533 3343 37999999999999999999
Q ss_pred cCceeC
Q 012896 173 NGMLLN 178 (454)
Q Consensus 173 ~~~~~~ 178 (454)
+|..+.
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 987663
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=7.3e-16 Score=108.86 Aligned_cols=70 Identities=44% Similarity=0.764 Sum_probs=67.5
Q ss_pred EEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 308 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
|||+|||..+|+++|+++|++||.|..+.+..+.++..+++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999886
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=5.8e-15 Score=116.19 Aligned_cols=169 Identities=20% Similarity=0.309 Sum_probs=131.1
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccc
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~ 281 (454)
...++|+|||.++.+.+|.++|-+||.|..|.+..... .-.||||+|++..+|..|+..-++..++|.+|+|.+....
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46899999999999999999999999999998876543 2459999999999999999999999999999999987653
Q ss_pred cHHHHHHHHHHHH---------hhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEE
Q 012896 282 SERELELKHQFEQ---------NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352 (454)
Q Consensus 282 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~ 352 (454)
....... ..+.. ...-.........|.|.+||+.-+++||+++...-|.|....+.+| |.+.|+
T Consensus 84 r~s~~~~-G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRR-GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred Ccccccc-cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 2100000 00000 0000111123356999999999999999999999999999888876 479999
Q ss_pred eCCHHHHHHHHHHcCCceec--CcceEEE
Q 012896 353 FSTPEEASRALLEMNGKMVV--SKPLYVA 379 (454)
Q Consensus 353 f~~~~~A~~a~~~l~g~~~~--g~~l~v~ 379 (454)
|...+|...|+..|+...+. |....+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 99999999999999987664 4444443
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=2.4e-15 Score=106.23 Aligned_cols=70 Identities=44% Similarity=0.808 Sum_probs=66.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 26 l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
|||+|||+++++++|+++|++||.|..+.+..+ ..+..+++|||+|.+.++|++|++.|++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6788899999999999999999999999999998875
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.7e-15 Score=123.72 Aligned_cols=81 Identities=32% Similarity=0.597 Sum_probs=77.7
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
+..+|.|.||+.++++++|+++|.+||.|..|.|.+|+ +|.++|||||.|.+.++|.+||+.|||.-++.=.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999997 89999999999999999999999999999999999999998
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=8.5e-15 Score=103.15 Aligned_cols=70 Identities=40% Similarity=0.692 Sum_probs=65.2
Q ss_pred EEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 308 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
|+|+|||..+++++|+++|+.||.|..+++..++++..+++|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999997788999999999999999999999999999999885
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8e-15 Score=120.99 Aligned_cols=85 Identities=27% Similarity=0.431 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
....+++|.|.||+.+++|.+|.+||.+||+|..+.+.+|+.+|.++|||||.|.+.++|.+|++.||+.-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34478889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 66
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.58 E-value=1e-13 Score=120.29 Aligned_cols=164 Identities=20% Similarity=0.351 Sum_probs=133.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
+.-+..|||+|||.++|-+++.++|++||.|. .|+++++.. |..+|-|++.|...+++..|+.-|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45567899999999999999999999999774 478888864 889999999999999999999999999999
Q ss_pred CcceeeecccCC------------------------------------CccccCCCcceeeecCCc----ccC-------
Q 012896 92 GKPIRVMYSHRD------------------------------------PSLRKSGAGNIFIKNLDK----AID------- 124 (454)
Q Consensus 92 g~~i~v~~~~~~------------------------------------~~~~~~~~~~l~v~nlp~----~~~------- 124 (454)
|+.|+|..++-. ........++|.+.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999876410 011112346788888721 122
Q ss_pred hHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecc
Q 012896 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187 (454)
Q Consensus 125 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~ 187 (454)
.++|.+-.++||.|.++.+... .+.|.+-|.|.+.++|..|++.|+|..+.||.|..+..
T Consensus 290 kedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 3456667889999999988754 45778999999999999999999999999999988644
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2e-15 Score=129.62 Aligned_cols=79 Identities=28% Similarity=0.511 Sum_probs=74.6
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|+|.|||+.+-|-||+.+|.+||.|.+|.|+.++.| +|||+||+|++.+||++|.++|||..+.||+|.|..|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4567999999999999999999999999999999999877 599999999999999999999999999999999998864
No 68
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=2.2e-15 Score=120.86 Aligned_cols=79 Identities=28% Similarity=0.460 Sum_probs=75.8
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|.|.||-..++.++|+.+|++||.|-+|.|++|. +++++|||||.|.+..||+.|+++|+|.+++|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35689999999999999999999999999999999997 89999999999999999999999999999999999999886
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=2.4e-14 Score=100.78 Aligned_cols=70 Identities=33% Similarity=0.683 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 26 l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
|+|+|||+++++++|+++|+.+|.|..+.+.+++. +..+++|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999998999998774
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.5e-14 Score=113.19 Aligned_cols=78 Identities=27% Similarity=0.505 Sum_probs=72.0
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+||+..+++.||..+|..||.+.+|-|-.+ ..|||||+|+++.||..|+..|+|..|+|..|+|.+..-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4678999999999999999999999999999999876 578999999999999999999999999999999999864
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 33
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.2e-14 Score=120.86 Aligned_cols=147 Identities=24% Similarity=0.479 Sum_probs=126.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
..|||++||+.+.+.+|..||..||.+..+.+.. ||+||+|.+..+|..|+..||+..+.|..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999998887753 48999999999999999999999999988888887631
Q ss_pred ------Ccc------------ccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHH
Q 012896 104 ------PSL------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165 (454)
Q Consensus 104 ------~~~------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A 165 (454)
+.. .......++|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|+..+++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 110 1123457899999999999999999999999855444 356899999999999
Q ss_pred HHHHHHhcCceeCCceeEEe
Q 012896 166 QKAIEKLNGMLLNDKQVYVG 185 (454)
Q Consensus 166 ~~a~~~l~~~~~~~~~l~v~ 185 (454)
..|+..|++..+.++.|.+.
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred hhcchhccchhhcCceeeec
Confidence 99999999999999999983
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=3.4e-14 Score=121.58 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=70.0
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.++|||+|||+.+|+++|+++|+.||.|++|+|+.+.. .+|||||+|++.++|..|+ .|+|..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999988753 4789999999999999999 599999999999999975
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=5.7e-14 Score=99.62 Aligned_cols=82 Identities=21% Similarity=0.431 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.+.-++-|||+|||.++|.++++++|.+||+|..|+|-.. ...+|.|||.|++..+|.+|+..|.+..+.++.+.|.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3556789999999999999999999999999999999654 4467899999999999999999999999999999998
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
+....
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 87654
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.8e-14 Score=111.67 Aligned_cols=79 Identities=33% Similarity=0.551 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
.-.++|||+||+.++++.||+..|..||++.+|||-+.+ -|||||+|++..||..|+..|++..|.|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 447999999999999999999999999999999997753 379999999999999999999999999999999998
Q ss_pred cCCC
Q 012896 101 HRDP 104 (454)
Q Consensus 101 ~~~~ 104 (454)
...+
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 8653
No 75
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=8.2e-15 Score=120.55 Aligned_cols=78 Identities=28% Similarity=0.472 Sum_probs=71.9
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
-++|||++|++.+..|+|+++|++||+|.+..|+.|+ +|+++||+||+|.+.++|.+||+. -+-.|+||+-.|.+|..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 4689999999999999999999999999999999997 899999999999999999999944 44789999999999865
No 76
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.8e-14 Score=105.39 Aligned_cols=84 Identities=25% Similarity=0.474 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
-..++||||+||...++|+.|+++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|..|+..+++..++.++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 36789999999999999999999999999999999999988888999999999999999999999999999999999987
Q ss_pred ccCC
Q 012896 100 SHRD 103 (454)
Q Consensus 100 ~~~~ 103 (454)
....
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 6643
No 77
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=127.61 Aligned_cols=173 Identities=12% Similarity=0.058 Sum_probs=129.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
++..+......+.+-+.+.+.+..+.+++++|... .|-++.+..+.-.+...|-++|.|...+++++|+.. +...+..
T Consensus 301 ggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~ 378 (944)
T KOG4307|consen 301 GGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVN 378 (944)
T ss_pred CCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhhhh
Confidence 33444445677888899999999999999999754 344444444433444478899999999999999986 6666677
Q ss_pred cceeeecccCCC-------------------------------------ccccCCCcceeeecCCcccChHHHhhhhccc
Q 012896 93 KPIRVMYSHRDP-------------------------------------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135 (454)
Q Consensus 93 ~~i~v~~~~~~~-------------------------------------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 135 (454)
+.+.+...-... .........|+|..||..+++..+.++|...
T Consensus 379 R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~ 458 (944)
T KOG4307|consen 379 RPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA 458 (944)
T ss_pred cceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh
Confidence 777764432110 0111223579999999999999999999988
Q ss_pred CceeE-EEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecc
Q 012896 136 GNILS-CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187 (454)
Q Consensus 136 g~v~~-~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~ 187 (454)
..|++ |.+...+++...+.|||.|.+++.+..|..--+.+.+..+.|+|...
T Consensus 459 ~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 459 AAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred hhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 78877 77777788888999999999999888888766667777777777533
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=4.3e-14 Score=113.49 Aligned_cols=87 Identities=30% Similarity=0.474 Sum_probs=83.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
+++-....+|.|.||.+.++.++|+.+|++||.|-+|.|..|..++.++|||||.|.+..+|+.|++.|++..++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 77778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCC
Q 012896 97 VMYSHRD 103 (454)
Q Consensus 97 v~~~~~~ 103 (454)
|+++.-.
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9988754
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=111.14 Aligned_cols=171 Identities=20% Similarity=0.345 Sum_probs=124.7
Q ss_pred cCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC--CCCceeEEEEEeCChHHHHHHHHHHcCCCCC---CceE
Q 012896 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFD---DKEW 273 (454)
Q Consensus 199 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~--~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~~ 273 (454)
....++|||++||.++...+|..+|..|--.+.+.+.... ....+-++|+.|.+..+|..|++.|+|..++ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3446899999999999999999999998777777666543 2345579999999999999999999998885 4567
Q ss_pred EEeccccccHHHHH--------------------HH-HHHHH--------------------------------------
Q 012896 274 YVGKAQKKSERELE--------------------LK-HQFEQ-------------------------------------- 294 (454)
Q Consensus 274 ~v~~~~~~~~~~~~--------------------~~-~~~~~-------------------------------------- 294 (454)
++..++........ .. ....+
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 77666543211100 00 00000
Q ss_pred ---------hhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 012896 295 ---------NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365 (454)
Q Consensus 295 ---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~ 365 (454)
+..-......+.+|||.||..+++|++|+.+|+.|.....++|... .| -..||++|++.+.|..|+..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHH
Confidence 0000011123467999999999999999999999987766666432 22 45899999999999999999
Q ss_pred cCCceec
Q 012896 366 MNGKMVV 372 (454)
Q Consensus 366 l~g~~~~ 372 (454)
|.|..|.
T Consensus 268 lqg~~~s 274 (284)
T KOG1457|consen 268 LQGNLLS 274 (284)
T ss_pred hhcceec
Confidence 9998774
No 80
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=117.91 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
.++|||+|||+.++|++|+++|+.||.|.+|+|+.+.. ++|||||+|.+.++|+.|+. |++..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 58999999999999999999999999999999998753 46899999999999999996 999999999999988764
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3e-13 Score=95.99 Aligned_cols=80 Identities=28% Similarity=0.415 Sum_probs=72.0
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.+-|||.|||+.+|.|+..++|.+||+|..|+|-.. ...+|.|||.|++..+|.+|+..|+|..+.++.|.|-|..+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 346999999999999999999999999999998544 335889999999999999999999999999999999998765
Q ss_pred HH
Q 012896 385 ED 386 (454)
Q Consensus 385 ~~ 386 (454)
..
T Consensus 96 ~~ 97 (124)
T KOG0114|consen 96 DA 97 (124)
T ss_pred HH
Confidence 53
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.9e-14 Score=119.82 Aligned_cols=165 Identities=29% Similarity=0.423 Sum_probs=129.8
Q ss_pred eEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccH
Q 012896 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283 (454)
Q Consensus 204 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~ 283 (454)
.++|++|++...+.++..+|..||.+..+.+. .||+||+|.+..+|..|+..+++..+.+..+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 58999999999999999999999999988876 45899999999999999999999999999888887764211
Q ss_pred HHHHHHHHHH--HhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 012896 284 RELELKHQFE--QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361 (454)
Q Consensus 284 ~~~~~~~~~~--~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~ 361 (454)
.......... ....-....-..+.+.|.+++..+.+++|.++|.++|.+....+ .++++||+|.+.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhh
Confidence 1100000000 00001111224567889999999999999999999999966555 25689999999999999
Q ss_pred HHHHcCCceecCcceEEEEcc
Q 012896 362 ALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 362 a~~~l~g~~~~g~~l~v~~~~ 382 (454)
|+..|+|..+.++.|.+...-
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred cchhccchhhcCceeeecccC
Confidence 999999999999999995443
No 83
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=9.5e-14 Score=114.36 Aligned_cols=81 Identities=30% Similarity=0.450 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
-.-.+|||+||||++..++|+++|++||.|++..|+.|+.+++++||+||.|++.+.|.+|++. -+-.|+||+..+..+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3447899999999999999999999999999999999999999999999999999999999995 345689999888776
Q ss_pred cC
Q 012896 101 HR 102 (454)
Q Consensus 101 ~~ 102 (454)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 53
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.2e-14 Score=115.22 Aligned_cols=83 Identities=33% Similarity=0.515 Sum_probs=78.5
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||++|-..+++.-|...|-+||.|.+|.++.|. ++++||||||+|+..+||..|+..||+.++.||.|+|.||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35789999999999999999999999999999999996 89999999999999999999999999999999999999998
Q ss_pred chHH
Q 012896 383 RKED 386 (454)
Q Consensus 383 ~~~~ 386 (454)
+..-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7553
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.45 E-value=2.1e-12 Score=112.20 Aligned_cols=180 Identities=21% Similarity=0.307 Sum_probs=138.2
Q ss_pred CccceEEEeCCCCCCCHHHHHHhhcccCCee--------EEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCc
Q 012896 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTIT--------SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271 (454)
Q Consensus 200 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 271 (454)
..+..++|+|||.++|.+++.++|+.+|-|. .|.+.++..|..+|-+++.|...+++.-|+..|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456799999999999999999999999765 36788888899999999999999999999999999999999
Q ss_pred eEEEeccccccHHHHH-----------HH-HHHHHhh--------HHHhhhcCCceEEEecCC--C--cCC-------HH
Q 012896 272 EWYVGKAQKKSERELE-----------LK-HQFEQNM--------KEAADKFQGANLYIKNLD--D--SID-------DE 320 (454)
Q Consensus 272 ~~~v~~~~~~~~~~~~-----------~~-~~~~~~~--------~~~~~~~~~~~l~v~nl~--~--~~~-------~~ 320 (454)
.++|..+.-....... .. ....+.. .........++|.+.|+= . ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999987643211100 00 0001110 011122345678888872 1 222 26
Q ss_pred HHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 321 ~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
+|++-+++||.|.+|.|.-.. +.|.+-|.|.+.++|..||..|+|+.|.||.|..+...
T Consensus 292 dl~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 777889999999999886432 36789999999999999999999999999999988654
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=3.9e-13 Score=121.80 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=73.6
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCH--HHHHHHHHHcCCceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP--EEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~--~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
....+|||+||++.+++++|+.+|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 3456899999999999999999999999999999994 456 99999999987 789999999999999999999999
Q ss_pred ccchHH
Q 012896 381 AQRKED 386 (454)
Q Consensus 381 ~~~~~~ 386 (454)
|++.-.
T Consensus 85 AKP~YL 90 (759)
T PLN03213 85 AKEHYL 90 (759)
T ss_pred ccHHHH
Confidence 987553
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.9e-14 Score=113.14 Aligned_cols=77 Identities=23% Similarity=0.466 Sum_probs=73.2
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
+.-|||+|||+..||.||..+|++||.|..|.+++|. +|+++||||+.|++..+...|+..|||..|.||.|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3459999999999999999999999999999999997 9999999999999999999999999999999999999854
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=5.1e-13 Score=112.33 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=69.9
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...+|+|+||++.+|+++|+++|+.||.|.+|+|+++ +..+++|||+|+++++|..|+ .|+|..|.+++|.|.-+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3578999999999999999999999999999999988 445689999999999999999 899999999999998764
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=5.7e-13 Score=94.39 Aligned_cols=72 Identities=40% Similarity=0.715 Sum_probs=67.5
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
+|+|+|||..+++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|.+|+..++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 7788999999999999999999999999999999873
No 90
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.5e-13 Score=99.66 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=74.4
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
-.+++|||+||+..++||+|.++|++.|+|..|.+-.|. +...=|||||+|-+.++|..|+.-++|..++.++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 357899999999999999999999999999999887776 5566799999999999999999999999999999999987
Q ss_pred cc
Q 012896 382 QR 383 (454)
Q Consensus 382 ~~ 383 (454)
.-
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.6e-13 Score=113.36 Aligned_cols=82 Identities=20% Similarity=0.443 Sum_probs=77.3
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+=+||||..|+..++|..|+..|+.||.|+.|+|++++ +|+++|||||+|+++.+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 345789999999999999999999999999999999996 9999999999999999999999999999999999999987
Q ss_pred cch
Q 012896 382 QRK 384 (454)
Q Consensus 382 ~~~ 384 (454)
+..
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 643
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=110.43 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
+.+.+|+|+||++.+||++|++||+.||+|.+|.++++. ..+++|||+|.+.++|+.|+. |++..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 456899999999999999999999999999999999874 345799999999999999996 8999999999999765
Q ss_pred cC
Q 012896 101 HR 102 (454)
Q Consensus 101 ~~ 102 (454)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 43
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=2.9e-14 Score=112.05 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
-..+.-|||+|||+++||.||.-+|++||.|..|.+++|+.||+++||||+-|++..+...|+..||+..|.||+|+|-.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999954
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=1.6e-12 Score=92.07 Aligned_cols=71 Identities=39% Similarity=0.779 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 25 ~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
+|+|+|||.++++++|+++|++||+|..+.+..++ +.++|+|||+|.+.++|++|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 667899999999999999999999999999988876
No 95
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.1e-12 Score=113.13 Aligned_cols=83 Identities=27% Similarity=0.415 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.....++|+|+|||....|.||+..|.+||+|.+|.|+.+. .-+|||+||+|++.+||++|.++||+..+.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34566899999999999999999999999999999999863 3478999999999999999999999999999999998
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
.+...
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 76543
No 96
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=3.9e-12 Score=117.17 Aligned_cols=125 Identities=31% Similarity=0.564 Sum_probs=108.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc-
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH- 101 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~- 101 (454)
.++|||+|||+++++++|+++|..||.|..+.+..++.++.++|+|||.|.+.++|..|+..+++..|.|+.+.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998889999999999999999999999999999999999999853
Q ss_pred ---CCCccc------------------cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC
Q 012896 102 ---RDPSLR------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147 (454)
Q Consensus 102 ---~~~~~~------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~ 147 (454)
...... ......+++.+++..++...+...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 111111 1234568999999999999999999999999666665543
No 97
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2e-12 Score=110.04 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
+..-+=+||||.-|+++++|++|+..|+.||+|+.|.+++++.+++++|||||+|++..+...|.+..++..|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 33456699999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecc
Q 012896 98 MYS 100 (454)
Q Consensus 98 ~~~ 100 (454)
-+-
T Consensus 176 DvE 178 (335)
T KOG0113|consen 176 DVE 178 (335)
T ss_pred Eec
Confidence 543
No 98
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=2.7e-12 Score=90.56 Aligned_cols=70 Identities=41% Similarity=0.785 Sum_probs=65.9
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 28 V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
|+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998777888999999999999999999999999999988876
No 99
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.9e-15 Score=144.36 Aligned_cols=321 Identities=17% Similarity=0.170 Sum_probs=232.6
Q ss_pred cEEEEcCCCCCCCHHHHH-HHHhcCCCeEE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 24 TSLYVGDLEANVTDSQLY-DLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~-~~f~~~G~v~~-v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
+...|-|-+...+...|. .+++-++-+.. +.. +.......+|+++-.+.+++..++..+.......-++.+.-..
T Consensus 480 ~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~---~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 480 KAREIWNFIMTYGGGSIAGKWLEAINLEREYGDG---PSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred hhhHhhhccccCCcchHHHHHHHHHhHHHHhCCc---hhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 455667777777777777 66665432111 111 1112244589999999999999999877655555444443222
Q ss_pred CCCcc-----ccCCCcceeeecCCcccChH-HHhhhhcccCceeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhcC
Q 012896 102 RDPSL-----RKSGAGNIFIKNLDKAIDHK-ALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 174 (454)
Q Consensus 102 ~~~~~-----~~~~~~~l~v~nlp~~~~~~-~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~V~f~~~~~A~~a~~~l~~ 174 (454)
..... .........+.++.+..... ..+..|..+|.|+.+..... .......+.++.+....+++.|.. ..+
T Consensus 557 ~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~ 635 (881)
T KOG0128|consen 557 PEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAG 635 (881)
T ss_pred HHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccc
Confidence 21111 11123456667777665554 56778889999999988873 222223378899999999988887 567
Q ss_pred ceeCCceeEEecccccccchhhhcc----CccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEE-ECCCCCceeEEEEE
Q 012896 175 MLLNDKQVYVGHFLRKQERDTEINK----SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM-RDGDGKSKCFGFVN 249 (454)
Q Consensus 175 ~~~~~~~l~v~~~~~~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~-~~~~~~~~g~afv~ 249 (454)
..+.++...+............... ....++|++||+..+.+.++...|..+|.+..+.+. ....+.-+|++|+.
T Consensus 636 ~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~ 715 (881)
T KOG0128|consen 636 GALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVE 715 (881)
T ss_pred cccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeE
Confidence 7777777777655544322221111 223568999999999999999999999987777665 34467889999999
Q ss_pred eCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccC
Q 012896 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329 (454)
Q Consensus 250 f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 329 (454)
|...+++.+|+... ...+.|+ ..|+|.|.|+..|.++|+.+++.+
T Consensus 716 F~~~~~~~aaV~f~-d~~~~gK----------------------------------~~v~i~g~pf~gt~e~~k~l~~~~ 760 (881)
T KOG0128|consen 716 FLKPEHAGAAVAFR-DSCFFGK----------------------------------ISVAISGPPFQGTKEELKSLASKT 760 (881)
T ss_pred eecCCchhhhhhhh-hhhhhhh----------------------------------hhhheeCCCCCCchHHHHhhcccc
Confidence 99999999999643 3333331 149999999999999999999999
Q ss_pred CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 330 g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
|.+.+++++....|+.+|.|+|.|.+..+|.+++...++..+.-+.+.|....+
T Consensus 761 gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 761 GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999998888999999999999999999999999999988888888888655
No 100
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=2.4e-12 Score=85.79 Aligned_cols=56 Identities=38% Similarity=0.701 Sum_probs=51.3
Q ss_pred HHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 322 l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
|+++|++||.|.++.+.++. +++|||+|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998763 589999999999999999999999999999999986
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=4.8e-12 Score=90.09 Aligned_cols=74 Identities=38% Similarity=0.696 Sum_probs=69.6
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
+|+|+|||..+++++|+++|..||.|..+.+..+..+..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887667799999999999999999999999999999999864
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=2.5e-12 Score=90.74 Aligned_cols=70 Identities=41% Similarity=0.729 Sum_probs=65.4
Q ss_pred EecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 310 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
|+|||..+++++|+++|++||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999886 58889999999999999999999999999999999873
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1.5e-12 Score=97.15 Aligned_cols=80 Identities=20% Similarity=0.412 Sum_probs=74.8
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...-|||.++....++++|.+.|..||.|+.+++-.|. +|..+|||+|+|++.++|+.|+..+||..|.|.+|.|.|+=
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34569999999999999999999999999999998775 89999999999999999999999999999999999999984
Q ss_pred c
Q 012896 383 R 383 (454)
Q Consensus 383 ~ 383 (454)
.
T Consensus 151 v 151 (170)
T KOG0130|consen 151 V 151 (170)
T ss_pred e
Confidence 3
No 104
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=3.6e-12 Score=115.66 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCcCCCCcceee
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA--QEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~~~g~~i~v 97 (454)
....-+|||+||++++++++|.++|+.||.|..|.|++. +| ||||||+|.+. .++.+|++.||+..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 344589999999999999999999999999999999954 45 79999999988 7899999999999999999999
Q ss_pred ecccC
Q 012896 98 MYSHR 102 (454)
Q Consensus 98 ~~~~~ 102 (454)
..+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 88874
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=8.3e-12 Score=109.75 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=125.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhc---C-CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQ---M-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~---~-G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
--.|.+++||+++++.++.+||-+ . |-++.|.+++. ..++..|-|||.|...++|+.|+.+ |...+.-|-|.+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 456888999999999999999963 2 34456666664 4688899999999999999999996 5555555555553
Q ss_pred cccCC--------------------C---------ccccCCCcceeeecCCcccChHHHhhhhcccC-ce--eEEEEeeC
Q 012896 99 YSHRD--------------------P---------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NI--LSCKVATD 146 (454)
Q Consensus 99 ~~~~~--------------------~---------~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v--~~~~~~~~ 146 (454)
.+... + .........|.+++||+..+.++|.++|..|. .| ..+.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 33210 0 00112356799999999999999999998885 33 34788888
Q ss_pred CCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEec
Q 012896 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186 (454)
Q Consensus 147 ~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~ 186 (454)
..|++.|-|||+|.+.++|..|....+++..+.|.|.+-.
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 8899999999999999999999999888888888887743
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=3.3e-12 Score=95.36 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=81.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
+|.....+--|+|.++...++|++|.+.|..||+|+.|.+..|..+|..+|||+|+|.+.++|+.|+..+|+..+.|..+
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34455667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCC
Q 012896 96 RVMYSHRD 103 (454)
Q Consensus 96 ~v~~~~~~ 103 (454)
.|.|+--.
T Consensus 145 ~VDw~Fv~ 152 (170)
T KOG0130|consen 145 SVDWCFVK 152 (170)
T ss_pred eEEEEEec
Confidence 99886543
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.3e-11 Score=87.86 Aligned_cols=74 Identities=43% Similarity=0.819 Sum_probs=67.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 25 ~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
+|+|+|||+++++++|+++|+.+|.|..+.+..++.+ ..+++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987554 6678999999999999999999999999999988753
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=6.3e-12 Score=117.19 Aligned_cols=83 Identities=27% Similarity=0.496 Sum_probs=78.1
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
++|||+|+|+++++++|.++|+..|.|.++++..|. +|+.+||||++|.+.++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 679999999999999999999999999999999996 8999999999999999999999999999999999999999765
Q ss_pred HHHH
Q 012896 385 EDRR 388 (454)
Q Consensus 385 ~~~~ 388 (454)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5443
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.4e-11 Score=86.00 Aligned_cols=60 Identities=27% Similarity=0.560 Sum_probs=53.5
Q ss_pred HHHHHhccc----cCCCceEEE-EeeCC-C--CCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEE
Q 012896 319 DEKLKQLFS----PFGSITSCK-VMRDP-S--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (454)
Q Consensus 319 ~~~l~~~f~----~~g~v~~~~-~~~~~-~--~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v 378 (454)
+++|+++|+ +||.|.++. +..+. + +.++|+|||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 55543 4 889999999999999999999999999999999986
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.25 E-value=2.5e-11 Score=113.26 Aligned_cols=82 Identities=30% Similarity=0.607 Sum_probs=79.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
+.|+|+|+|++.+|++|.++|+..|+|.+++++.|+.+|+.+||+|++|.+.++|.+|++.||+..+.|++|+|.|....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred Cc
Q 012896 104 PS 105 (454)
Q Consensus 104 ~~ 105 (454)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 111
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.3e-12 Score=102.05 Aligned_cols=86 Identities=29% Similarity=0.514 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
..-|+|||++|..+++|.-|...|-+||.|..|.++.|-.++++|||+||+|.-.|||..|+..||..++.|++|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcc
Q 012896 101 HRDPSL 106 (454)
Q Consensus 101 ~~~~~~ 106 (454)
++....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 876433
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=3.4e-11 Score=80.19 Aligned_cols=56 Identities=34% Similarity=0.794 Sum_probs=50.6
Q ss_pred HHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 40 l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
|+++|++||.|..+.+.+++ +++|||+|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998754 469999999999999999999999999999999875
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.5e-10 Score=105.02 Aligned_cols=157 Identities=21% Similarity=0.287 Sum_probs=118.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC--Cccc---EEEEEeCCHHHHHHHHHHhCC--
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLG---YGYVNFSNAQEAARALEMLNF-- 87 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~--~~~g---~afV~f~~~~~A~~a~~~l~~-- 87 (454)
.....+.-+++|||++||++++|+.|...|..||++.--+..+....+ ..+| |+|+.|++..+++..+..+..
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~ 330 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE 330 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcc
Confidence 344557889999999999999999999999999988665553322222 2456 999999999999988877542
Q ss_pred -c-CC-------CCcceeeecc---cC----CCccccCCCcceeeecCCcccChHHHhhhhc-ccCceeEEEEeeC-CCC
Q 012896 88 -T-PL-------NGKPIRVMYS---HR----DPSLRKSGAGNIFIKNLDKAIDHKALHDTFS-AFGNILSCKVATD-LNG 149 (454)
Q Consensus 88 -~-~~-------~g~~i~v~~~---~~----~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~g~v~~~~~~~~-~~~ 149 (454)
. .| ..+.+.|... +. +....-...++|||++||-.++.++|..+|. .||.|..+-|-.| +-+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 1 11 1222322211 11 1122234578999999999999999999998 8999999998888 457
Q ss_pred CeeeEEEEEecCHHHHHHHHHH
Q 012896 150 QSKGYGFVQFDNEESAQKAIEK 171 (454)
Q Consensus 150 ~~~g~a~V~f~~~~~A~~a~~~ 171 (454)
-++|.|-|+|.+...-.+|+..
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 7899999999999999999973
No 114
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=4.5e-11 Score=110.88 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=102.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
....+.++|+|-|||..+++++|+++|+.||.|..|+.-. ..+|.+||+|-|..+|++|++.|+...+.|+.++-
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 3467889999999999999999999999999999976644 34578999999999999999999999999998883
Q ss_pred ecccCCC----------------ccc---cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEE
Q 012896 98 MYSHRDP----------------SLR---KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQ 158 (454)
Q Consensus 98 ~~~~~~~----------------~~~---~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~ 158 (454)
....... ... ....+.-.++.|++..+..-+..++.-+|.+.. .... .-...-++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~----~~~hq~~~~ 219 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISSVDGSSPG-RETP----LLNHQRFVE 219 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchhccCcccc-cccc----chhhhhhhh
Confidence 2221110 000 001122233348887777556666666676654 2211 111145677
Q ss_pred ecCHHHHHHHHHHhcCceeCCce
Q 012896 159 FDNEESAQKAIEKLNGMLLNDKQ 181 (454)
Q Consensus 159 f~~~~~A~~a~~~l~~~~~~~~~ 181 (454)
|.+..++..+...+ |..+.+..
T Consensus 220 ~~~~~s~a~~~~~~-G~~~s~~~ 241 (549)
T KOG4660|consen 220 FADNRSYAFSEPRG-GFLISNSS 241 (549)
T ss_pred hccccchhhcccCC-ceecCCCC
Confidence 77777774444433 55555544
No 115
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=2.2e-10 Score=105.40 Aligned_cols=164 Identities=30% Similarity=0.448 Sum_probs=121.5
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
..+|||+|||..+++++|.++|..||.+..+.+..+. ++.++|+|||+|.+.+++..|+..+++..+.|+.+.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999885 799999999999999999999999999999999999999653
Q ss_pred ----ccHHHH--HHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCC-cceEEEEEe
Q 012896 281 ----KSEREL--ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-SRGSGFVAF 353 (454)
Q Consensus 281 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~~g~afv~f 353 (454)
...... .....................+++.+++..++..++...|..+|.+....+.....+. .....++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0000000011122233456679999999999999999999999999777766554322 333444444
Q ss_pred CCHHHHHHHHHH
Q 012896 354 STPEEASRALLE 365 (454)
Q Consensus 354 ~~~~~A~~a~~~ 365 (454)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 444444444433
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.6e-10 Score=80.73 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=54.3
Q ss_pred HHHHHHHHh----cCCCeEEEE-EEecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 37 DSQLYDLFN----QMGQVVSVR-VCRDLST--RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 37 e~~l~~~f~----~~G~v~~v~-~~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
+++|+++|+ .||.|..|. +..++.+ +.++|+|||.|.+.++|.+|+..||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999996 6666555 788999999999999999999999999999999875
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.07 E-value=2.9e-09 Score=101.06 Aligned_cols=254 Identities=13% Similarity=0.017 Sum_probs=160.3
Q ss_pred eeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccccccc
Q 012896 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192 (454)
Q Consensus 114 l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~ 192 (454)
+.+.+.+++.+..+++++|... .+.+..+..+. .+...|-++|+|....++.+|++. +....-+|.+.+.+....+.
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 4455667778888899988643 35555555553 233478899999999999999884 44555566666654433221
Q ss_pred chh---------------------------------hhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeE-EEEEECC
Q 012896 193 RDT---------------------------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDG 238 (454)
Q Consensus 193 ~~~---------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~~ 238 (454)
... .........|+|..||..+++.++.+.|...-.|+. |.+.+..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 100 011122357999999999999999999998877777 7777778
Q ss_pred CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHH---HHHHHHHhh----HHHhhhc------CC
Q 012896 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELE---LKHQFEQNM----KEAADKF------QG 305 (454)
Q Consensus 239 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~------~~ 305 (454)
+++.++.|||.|...+++..|...-+...++.+.|+|............ ...+..+.. ......+ ..
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~ 551 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVP 551 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhh
Confidence 8899999999999988888887655666677788888877655441111 111111111 0111101 01
Q ss_pred ceEEEecCC-CcCCHHHHHhccccCCCce---EEEEeeCCCCCcceEEEEEeCCHHHHHHHH----HHcCCcee
Q 012896 306 ANLYIKNLD-DSIDDEKLKQLFSPFGSIT---SCKVMRDPSGISRGSGFVAFSTPEEASRAL----LEMNGKMV 371 (454)
Q Consensus 306 ~~l~v~nl~-~~~~~~~l~~~f~~~g~v~---~~~~~~~~~~~~~g~afv~f~~~~~A~~a~----~~l~g~~~ 371 (454)
.+-.+.+.+ +..+..+.+.+.. +.+. .+.+++|..+++++.+||.|.+...+..-. ..+||..|
T Consensus 552 ~~~~~~~~~~F~~~~rr~~~e~~--~~~~~~n~~p~~~dN~~~~~~~~~v~~~n~p~~r~~~~~~~~~vnn~pF 623 (944)
T KOG4307|consen 552 SKEQRSHEDDFDKKSRRSRWENT--SPIRSPNRSPLRRDNRDRSRSRSPVRRRNSPRRREEHTRWCVQVNNVPF 623 (944)
T ss_pred hhhhhccCcccccchHHHHhhhc--CCccCccccccccccCCcccccCccccCCCccccchhhhhhhcccCcce
Confidence 122344555 3444444444333 2333 356677777888999999999887765554 34555443
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=6.2e-11 Score=96.48 Aligned_cols=154 Identities=23% Similarity=0.341 Sum_probs=124.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
+..+..+||+|.|+-..++|+-|.++|-+-|+|..|.|..++ .++.+ ||||.|++.-++.-|+..+|+..+.++++.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 445677999999999999999999999999999999998765 34455 9999999999999999999999999999998
Q ss_pred ecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCcee
Q 012896 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLL 177 (454)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~ 177 (454)
.+-...... -|...++.+.+...|+..|++..+++..+.+++++.++++.+-..-..-.++...++...
T Consensus 82 ~~r~G~sha-----------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 82 TLRCGNSHA-----------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccccCCCcc-----------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 654332111 144567888899999999999999999988889999999988777766677776666655
Q ss_pred CCceeEE
Q 012896 178 NDKQVYV 184 (454)
Q Consensus 178 ~~~~l~v 184 (454)
.-+.+.+
T Consensus 151 ~~~~~~~ 157 (267)
T KOG4454|consen 151 FQKKVTI 157 (267)
T ss_pred CCCCccc
Confidence 5444444
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.3e-11 Score=116.86 Aligned_cols=236 Identities=17% Similarity=0.142 Sum_probs=185.8
Q ss_pred CCCcEEEEcCCCCCCCHH-HHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 21 FGTTSLYVGDLEANVTDS-QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~-~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
...+...+.|+-+..... ..++.|..+|.|+.|++...........+.++++....+++.+.. ..+..+.++...+..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 344566777777776665 567789999999999987632212222378999999999999988 477888888888877
Q ss_pred ccCCCccccC--------CCcceeeecCCcccChHHHhhhhcccCceeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHH
Q 012896 100 SHRDPSLRKS--------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170 (454)
Q Consensus 100 ~~~~~~~~~~--------~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~V~f~~~~~A~~a~~ 170 (454)
++..+..... ...++|+.||+..+.+.+|...|..+|.+..+.+... ..+..+|+||+.|..++++.+|+.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 7655432221 2347899999999999999999999998877766632 467889999999999999999998
Q ss_pred HhcCceeCCceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEe
Q 012896 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250 (454)
Q Consensus 171 ~l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f 250 (454)
...++.++ ...++|+|.|+..|.++++.++..+|.+.+..++....|..+|.++|.|
T Consensus 728 f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y 784 (881)
T KOG0128|consen 728 FRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDY 784 (881)
T ss_pred hhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccC
Confidence 65554443 1358899999999999999999999999999988888999999999999
Q ss_pred CChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 251 ~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
.+..++.+++.......+....+.+..+.+
T Consensus 785 ~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 785 NTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999877776666666655555443
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=4e-10 Score=91.39 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=73.2
Q ss_pred CceEEEecCCCcCCHHHHHhccccC-CCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPF-GSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..-++|..+|..+.+.+|..+|.+| |.|..+++-++. +|+++|||||+|++.+.|.-|.+.||+..+.++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4458999999999999999999988 688888886775 99999999999999999999999999999999999999987
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 66
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=4.4e-10 Score=98.10 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=68.9
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcC-CceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN-GKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~-g~~~~g~~l~v~~~ 381 (454)
....+|||++|-..+++.+|+++|.+||.|+++++... +++|||+|.+.++|+.|.+++- ...|+|.+|.|.|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 34568999999999999999999999999999999886 6799999999999999988764 45789999999999
Q ss_pred cc
Q 012896 382 QR 383 (454)
Q Consensus 382 ~~ 383 (454)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.8e-10 Score=98.47 Aligned_cols=87 Identities=29% Similarity=0.486 Sum_probs=80.6
Q ss_pred hhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEE
Q 012896 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (454)
Q Consensus 300 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v 378 (454)
...++.+.|||-.|.+-++++||.-+|+.||.|.+|.+++|. +|-+-.||||+|++.++.++|.-+|++..|+.+.|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 345677889999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred EEccchHH
Q 012896 379 ALAQRKED 386 (454)
Q Consensus 379 ~~~~~~~~ 386 (454)
.|+.....
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99976554
No 123
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=6.1e-10 Score=106.95 Aligned_cols=77 Identities=25% Similarity=0.465 Sum_probs=72.2
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
-++||||++|+..+++.||..+|+.||.|.+|.+... +|||||.+...++|.+|+.+|++..+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4678999999999999999999999999999999886 99999999999999999999999999999999999964
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
+-
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 33
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=1.9e-09 Score=87.48 Aligned_cols=87 Identities=23% Similarity=0.337 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~-G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
.........++|..+|.-.-+.++..+|.++ |+|..+++-+++.||+++|||||+|.+.+.|.-|-+.||+..+.++.+
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445666789999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred eeecccCC
Q 012896 96 RVMYSHRD 103 (454)
Q Consensus 96 ~v~~~~~~ 103 (454)
.+++-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 98876554
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-09 Score=94.96 Aligned_cols=88 Identities=26% Similarity=0.404 Sum_probs=82.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
..+..-++...|||..|.+-+++++|.-+|+.||+|.++.+++|..+|.+-.||||+|.+.++.++|.=+|++..|+.+.
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 34455688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccC
Q 012896 95 IRVMYSHR 102 (454)
Q Consensus 95 i~v~~~~~ 102 (454)
|.|-|+..
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99988764
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.7e-09 Score=96.84 Aligned_cols=163 Identities=18% Similarity=0.305 Sum_probs=112.3
Q ss_pred CccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEEC---CCCCcee---EEEEEeCChHHHHHHHHHHcCCCCCCceE
Q 012896 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKC---FGFVNFENSDDAARAVEALNGKKFDDKEW 273 (454)
Q Consensus 200 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~---~~~~~~g---~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 273 (454)
.-++.+|+++||++++++.|...|..||.+.----.+. .....+| |+|+.|+++..+...+.+... ....+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 34578999999999999999999999998643222111 1123445 999999999998888876543 22333
Q ss_pred EEeccccccHHHHHHHHHHH-----HhhHHHhhhcCCceEEEecCCCcCCHHHHHhccc-cCCCceEEEEeeCC-CCCcc
Q 012896 274 YVGKAQKKSERELELKHQFE-----QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS-PFGSITSCKVMRDP-SGISR 346 (454)
Q Consensus 274 ~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~v~~~~~~~~~-~~~~~ 346 (454)
......+...........+. --......-.+.+||||++||..++.++|..+|+ -||.|..+-|..|+ -+..+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 22222221111100000000 0000111233578999999999999999999998 89999999999984 67789
Q ss_pred eEEEEEeCCHHHHHHHHHH
Q 012896 347 GSGFVAFSTPEEASRALLE 365 (454)
Q Consensus 347 g~afv~f~~~~~A~~a~~~ 365 (454)
|-|-|+|.+..+=.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999998999865
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.93 E-value=8.3e-10 Score=92.20 Aligned_cols=169 Identities=27% Similarity=0.401 Sum_probs=125.5
Q ss_pred eEEEeCCCCCCCHHH---HHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 204 NVYVKNLSESTTEED---LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 204 ~l~v~nl~~~~t~~~---l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
..+++++-..+..+- +...|+.+-.+....+..+..+..++++|+.|.....-..+-..-.++.+..+.++......
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 345566555554443 25667777666666777777778888999999887776666655566666666655544332
Q ss_pred ccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 012896 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (454)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A 359 (454)
-.. .. .........+||.+.|..+++++.|...|.+|-.....+++++. +|+++||+||.|.+..|+
T Consensus 178 wed--Ps----------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 178 WED--PS----------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred cCC--cc----------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 111 00 11122345579999999999999999999999988889999986 899999999999999999
Q ss_pred HHHHHHcCCceecCcceEEEEccch
Q 012896 360 SRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 360 ~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.+|+.+++|+.++.++|++.-..-+
T Consensus 246 ~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 246 VRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred HHHHHhhcccccccchhHhhhhhHH
Confidence 9999999999999999998755433
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=3.4e-10 Score=92.23 Aligned_cols=140 Identities=25% Similarity=0.328 Sum_probs=122.1
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
..++|+|.|+...++++-|.++|-+-|+|..+.|....++..+ ||||.|.++....-|+..++|..+.++.+.+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~--- 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL--- 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc---
Confidence 4578999999999999999999999999999999888877777 999999999999999999999999999877743
Q ss_pred ccHHHHHHHHHHHHhhHHHhhhcCCceEEEec----CCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCH
Q 012896 281 KSERELELKHQFEQNMKEAADKFQGANLYIKN----LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356 (454)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~ 356 (454)
+-++ |...++++.+...|+.-|.+..+++..+.+|+.+.+.|+.+...
T Consensus 84 ----------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 84 ----------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred ----------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 3444 66678999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHcCCceec
Q 012896 357 EEASRALLEMNGKMVV 372 (454)
Q Consensus 357 ~~A~~a~~~l~g~~~~ 372 (454)
...-.++....+....
T Consensus 136 ~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 136 CAVPFALDLYQGLELF 151 (267)
T ss_pred hcCcHHhhhhcccCcC
Confidence 8777887776665443
No 129
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=3.1e-09 Score=102.22 Aligned_cols=106 Identities=19% Similarity=0.302 Sum_probs=83.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
.-++||||++||..++|.||.++|+.||.|.+|.++. ++|||||.+.+.++|.+|+.+|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4589999999999999999999999999999999875 4579999999999999999999999999999999998
Q ss_pred cCCCccc---cCCCcceeeecCCcccChHHHhhhh
Q 012896 101 HRDPSLR---KSGAGNIFIKNLDKAIDHKALHDTF 132 (454)
Q Consensus 101 ~~~~~~~---~~~~~~l~v~nlp~~~~~~~l~~~f 132 (454)
-..-... .--.-.+=|.-||+..-.+++..+.
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 7542221 1112234556677754444444433
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=3.5e-09 Score=92.59 Aligned_cols=82 Identities=24% Similarity=0.459 Sum_probs=74.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH-hCCcCCCCc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM-LNFTPLNGK 93 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~-l~~~~~~g~ 93 (454)
..++.+....+|||++|-..++|.+|+++|-+||.|.+|.+...+ ++|||+|.+.+.|++|..+ ++...|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 567778889999999999999999999999999999999998753 4999999999999999988 456778999
Q ss_pred ceeeecccC
Q 012896 94 PIRVMYSHR 102 (454)
Q Consensus 94 ~i~v~~~~~ 102 (454)
.|+|.|+..
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999887
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=8.6e-10 Score=107.73 Aligned_cols=162 Identities=20% Similarity=0.276 Sum_probs=137.1
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccc
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~ 281 (454)
+.+|+++|++..+++.+|+..|..+|.+..+.+....-+...-|+||.|.+...+..|...+.+..+....+++.+....
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 46899999999999999999999999999998877655555668999999999999998888888887766666555431
Q ss_pred cHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 012896 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361 (454)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~ 361 (454)
....+.+++++|+..+....|...|..||.|..|.+... .-||+|.|++...|+.
T Consensus 452 --------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 452 --------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQA 506 (975)
T ss_pred --------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchh
Confidence 123557999999999999999999999999999888654 4589999999999999
Q ss_pred HHHHcCCceecC--cceEEEEccchHHHH
Q 012896 362 ALLEMNGKMVVS--KPLYVALAQRKEDRR 388 (454)
Q Consensus 362 a~~~l~g~~~~g--~~l~v~~~~~~~~~~ 388 (454)
|++.+.|..|.| +.++|.|+...-..+
T Consensus 507 a~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred hHHHHhcCcCCCCCcccccccccCCCCCh
Confidence 999999999986 789999998655433
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.79 E-value=1.5e-08 Score=86.99 Aligned_cols=81 Identities=27% Similarity=0.473 Sum_probs=75.6
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.++|.|.|||..++++||+++|..||.++.+-+..++.|.+.|.|-|.|...+||.+|++.++|..++|+.|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999887644
Q ss_pred H
Q 012896 385 E 385 (454)
Q Consensus 385 ~ 385 (454)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 4
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.76 E-value=6.9e-08 Score=70.50 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC----Ccceee
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN----GKPIRV 97 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~--G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~i~v 97 (454)
.||.|+|||...+.++|.+++... |..--+.++-|..++.+.|||||.|.+.+.|.+....+++.... .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988653 67777888888889999999999999999999999999988764 344555
Q ss_pred eccc
Q 012896 98 MYSH 101 (454)
Q Consensus 98 ~~~~ 101 (454)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5554
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=5.1e-09 Score=102.49 Aligned_cols=157 Identities=18% Similarity=0.298 Sum_probs=132.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
+...+++|+++||+..+++.+|+..|..+|.|.+|.|-.-. .+...-|+||.|.+...+..|+-.+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 45778999999999999999999999999999999886532 33344589999999999999999999988887788887
Q ss_pred cccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 012896 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (454)
Q Consensus 99 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 178 (454)
+... .......+++++|.+.+....|...|..||.|..|.+-+. ..|+|+.|.+...++.|++.|.+..++
T Consensus 447 lG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G 517 (975)
T KOG0112|consen 447 LGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLG 517 (975)
T ss_pred cccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCC
Confidence 7754 2234568999999999999999999999999988777544 559999999999999999999998887
Q ss_pred Cc--eeEEe
Q 012896 179 DK--QVYVG 185 (454)
Q Consensus 179 ~~--~l~v~ 185 (454)
+- .+.+.
T Consensus 518 ~P~~r~rvd 526 (975)
T KOG0112|consen 518 GPPRRLRVD 526 (975)
T ss_pred CCCcccccc
Confidence 53 44443
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.75 E-value=1.5e-08 Score=84.89 Aligned_cols=154 Identities=21% Similarity=0.318 Sum_probs=127.3
Q ss_pred hhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccccchhhhccCccceEEEe
Q 012896 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVK 208 (454)
Q Consensus 129 ~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~ 208 (454)
...|+.+-.+...+++.+..+.-.+++|+.|.....-..+...-+++.+....+++.-...-.+............||.+
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcg 196 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCG 196 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecc
Confidence 56677777778888888887888899999999888888877766777777776777655555555555556667789999
Q ss_pred CCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccccc
Q 012896 209 NLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (454)
Q Consensus 209 nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~ 282 (454)
.|.-+++++.+...|.+|-.-....++++. +++++||+||.|.+..++..|+..|+|..++.+.|....+..+.
T Consensus 197 dlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 197 DLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 999999999999999999888888877775 79999999999999999999999999999999998876665544
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.70 E-value=1.1e-07 Score=69.44 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=69.3
Q ss_pred CceEEEecCCCcCCHHHHHhccccC--CCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceec----CcceE
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVV----SKPLY 377 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~----g~~l~ 377 (454)
++||.|+|+|...|.++|.+++... |...-+.++.|- ++.+.|||||.|.++++|.+-.+.++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999988543 567778888885 7788999999999999999999999999875 57889
Q ss_pred EEEccchH
Q 012896 378 VALAQRKE 385 (454)
Q Consensus 378 v~~~~~~~ 385 (454)
|.||+-..
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 99987443
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.69 E-value=2.9e-08 Score=92.20 Aligned_cols=80 Identities=29% Similarity=0.475 Sum_probs=73.2
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||.+|...+-..+|+.+|++||.|+-.+++.+. +--.++|+||++.+.++|.++|+.||...|+|+.|.|.-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45689999999999999999999999999999998885 44468999999999999999999999999999999999886
Q ss_pred c
Q 012896 383 R 383 (454)
Q Consensus 383 ~ 383 (454)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.1e-08 Score=95.26 Aligned_cols=70 Identities=27% Similarity=0.471 Sum_probs=64.6
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
...+|+|-|||..+++++|+.+|+.||+|+.|+.-+. .+|..||+|-|+.+|++|+++|++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4568999999999999999999999999999876555 578899999999999999999999999999998
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.1e-07 Score=81.58 Aligned_cols=85 Identities=31% Similarity=0.479 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
..+..+.+|+|.|||+.+++++|+++|..||.+..+.+-.+ ..|++.|+|-|.|...+||.+|++.+++..++|+.+++
T Consensus 78 ~~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 78 INETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred ccCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 35666789999999999999999999999998888877776 56889999999999999999999999999999999988
Q ss_pred ecccCC
Q 012896 98 MYSHRD 103 (454)
Q Consensus 98 ~~~~~~ 103 (454)
......
T Consensus 157 ~~i~~~ 162 (243)
T KOG0533|consen 157 EIISSP 162 (243)
T ss_pred EEecCc
Confidence 765544
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.66 E-value=5.8e-08 Score=92.72 Aligned_cols=84 Identities=33% Similarity=0.520 Sum_probs=75.5
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC----CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
.+..++|||+||++.++++.|...|..||+|.+++|+... ..+.+.|+||.|.+..||++|++.|+|..+.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567889999999999999999999999999999987764 345678999999999999999999999999999999
Q ss_pred EEEccchH
Q 012896 378 VALAQRKE 385 (454)
Q Consensus 378 v~~~~~~~ 385 (454)
+-|++...
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99997443
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.64 E-value=9.7e-08 Score=88.84 Aligned_cols=85 Identities=28% Similarity=0.486 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
..-++.|||++|...+.-.+|+.+|++||+|...+++.+..+.-.++|+||++.+.++|.+|++.|+.+.+-|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 45578999999998888899999999999999999999888777889999999999999999999999999999999998
Q ss_pred ccCCC
Q 012896 100 SHRDP 104 (454)
Q Consensus 100 ~~~~~ 104 (454)
++..+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87553
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.64 E-value=1.7e-07 Score=64.62 Aligned_cols=70 Identities=30% Similarity=0.417 Sum_probs=48.6
Q ss_pred cEEEEcCCCCCCCHHHH----HHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 24 TSLYVGDLEANVTDSQL----YDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l----~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
..|+|.|||.+.+...| ++++..|| .|.+|. .+.|+|.|.+.+.|.+|.++|++..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999988765 55666785 887772 1489999999999999999999999999999999
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98654
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.61 E-value=2.5e-08 Score=89.18 Aligned_cols=176 Identities=23% Similarity=0.254 Sum_probs=133.9
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEE-CCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR-DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
..+++++++...+.+.+...++..+|......+.. .....+++++++.|...+.+..++.........+..+.......
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 56789999999998888888999999766666555 34678899999999999999999875444455555554444333
Q ss_pred ccHHHHHHHHHHHHhhHHHhhhcCCceEE-EecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHH
Q 012896 281 KSERELELKHQFEQNMKEAADKFQGANLY-IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (454)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~ 358 (454)
..... .............+++ |++++..+++++|+.+|..+|.|..++++.++ ++..+|+|+|.|.+...
T Consensus 168 ~~~~~--------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 168 RGLRP--------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNS 239 (285)
T ss_pred ccccc--------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchh
Confidence 22100 0000111112223445 99999999999999999999999999998886 78999999999999999
Q ss_pred HHHHHHHcCCceecCcceEEEEccchHH
Q 012896 359 ASRALLEMNGKMVVSKPLYVALAQRKED 386 (454)
Q Consensus 359 A~~a~~~l~g~~~~g~~l~v~~~~~~~~ 386 (454)
+..++.. ....+.++++.+.+..+...
T Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 240 KKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHHHhhc-ccCcccCcccccccCCCCcc
Confidence 9999987 88899999999999876543
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.57 E-value=1.7e-07 Score=87.29 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
....+|||+|||.++++++|+++|..||+|+...|......+.+.+|+||+|.+.++++.|+.. +...+.++.+.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 4445599999999999999999999999999999987654444448999999999999999996 577888999999754
Q ss_pred c
Q 012896 101 H 101 (454)
Q Consensus 101 ~ 101 (454)
.
T Consensus 365 ~ 365 (419)
T KOG0116|consen 365 R 365 (419)
T ss_pred c
Confidence 3
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.47 E-value=4.3e-07 Score=78.44 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=75.0
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.+.+||+|+...+|.+++..+|+.||.|..+.++.+. .+.++|||||+|.+.+.+..|+. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4456789999999999999999999999999999999997 56799999999999999999996 999999999999998
Q ss_pred ccch
Q 012896 381 AQRK 384 (454)
Q Consensus 381 ~~~~ 384 (454)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8633
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.46 E-value=2.4e-07 Score=82.97 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=133.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
...++++++++-..+.+.+...++...|.+.............++|++.+.|...+.+..++.........++.+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45899999999999999989999999997767766665566778899999999999999999964433444554444333
Q ss_pred cCCC--------ccccCCCccee-eecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHH
Q 012896 101 HRDP--------SLRKSGAGNIF-IKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIE 170 (454)
Q Consensus 101 ~~~~--------~~~~~~~~~l~-v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~ 170 (454)
+... ........+++ |.+++.+++.++|+..|..+|.|..+++.... .+...+++++.|.....+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 3221 11122334455 99999999999999999999999999998874 68899999999999999999998
Q ss_pred HhcCceeCCceeEEeccccc
Q 012896 171 KLNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 171 ~l~~~~~~~~~l~v~~~~~~ 190 (454)
. +...+.++.+.+......
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred c-ccCcccCcccccccCCCC
Confidence 7 888889988888665444
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=6.9e-07 Score=85.58 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL---STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
.++....|||+||++.+++..|...|..||+|.+|+|+--. ...+.+.|+||.|.+..||++|++.|++..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 36788999999999999999999999999999999997522 112345699999999999999999999999999999
Q ss_pred eeecccC
Q 012896 96 RVMYSHR 102 (454)
Q Consensus 96 ~v~~~~~ 102 (454)
++.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999864
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.35 E-value=3.2e-07 Score=81.69 Aligned_cols=215 Identities=13% Similarity=0.143 Sum_probs=128.1
Q ss_pred CcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCC----CCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEec
Q 012896 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN----GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186 (454)
Q Consensus 111 ~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~ 186 (454)
.+.|-|.||.+.++.+.++.+|...|.|..+.++.+.+ ......|||.|.+...+..|.+ |.++.+-++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34789999999999999999999999999999998632 3345689999999999988876 777777777777755
Q ss_pred ccccccchh-hhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcC
Q 012896 187 FLRKQERDT-EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNG 265 (454)
Q Consensus 187 ~~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 265 (454)
+........ ........+..-+-||++ | |.+.+....
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pd--------------------------g-------~Lp~~~~lt--------- 123 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPD--------------------------G-------VLPGDRPLT--------- 123 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCC--------------------------C-------ccCCCCccc---------
Confidence 433222111 111111111111111110 0 001000000
Q ss_pred CCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCc
Q 012896 266 KKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGIS 345 (454)
Q Consensus 266 ~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 345 (454)
.++-....+-..+.-...... .. .+. -.++++|.+|+..+...++.+.|..+|.|...++-... .
T Consensus 124 -~~nh~p~ailktP~Lp~~~~A--~k--------lee-irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~ 188 (479)
T KOG4676|consen 124 -KINHSPNAILKTPELPPQAAA--KK--------LEE-IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKS---R 188 (479)
T ss_pred -cccCCccceecCCCCChHhhh--hh--------hHH-HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---C
Confidence 000000000000000000000 00 000 12569999999999999999999999999887764432 2
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 346 ~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.-+|-+.|........|+ ..+|+.+.-...++..-++.
T Consensus 189 s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 189 SSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred CcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCcc
Confidence 346779999888888887 67788777555555444443
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=7e-07 Score=83.33 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=68.8
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...+|||.|||.+++.++|.++|..||.|+...|.... .++..+||||+|.+.+++..||++- -..|++++|.|.-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 34459999999999999999999999999998887654 4454599999999999999999665 678899999998776
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
...
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 543
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.35 E-value=7.7e-07 Score=76.90 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
......+.+||+|+-..+|.+++..+|+.||.|..+.+..++-.+.++|||||+|.+.+.+..++. |++..+.|+.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456788999999999999999999999999999999999998888899999999999999999999 9999999999999
Q ss_pred ecccCC
Q 012896 98 MYSHRD 103 (454)
Q Consensus 98 ~~~~~~ 103 (454)
.+-...
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 765543
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.27 E-value=3.6e-06 Score=58.21 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=48.0
Q ss_pred ceEEEecCCCcCCHH----HHHhccccCC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 306 ANLYIKNLDDSIDDE----KLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~----~l~~~f~~~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
+-|+|.|||...+.. .|++++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 359999999987764 5667777886 676662 35799999999999999999999999999999999
Q ss_pred ccc
Q 012896 381 AQR 383 (454)
Q Consensus 381 ~~~ 383 (454)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 843
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.08 E-value=1.6e-06 Score=77.34 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=112.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 25 ~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
.|.|.||.+.++.+.++.+|...|.|.++.++.... ..-....|||.|.+.+.+..|.. |.+..|-++.+.|...-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 899999999999999999999999999999987322 12235689999999999999999 67777777776664332
Q ss_pred CCC------------------------------cccc------------------------CCCcceeeecCCcccChHH
Q 012896 102 RDP------------------------------SLRK------------------------SGAGNIFIKNLDKAIDHKA 127 (454)
Q Consensus 102 ~~~------------------------------~~~~------------------------~~~~~l~v~nlp~~~~~~~ 127 (454)
... .... +-.++++|++|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 110 0000 0125688999999999999
Q ss_pred HhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 012896 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (454)
Q Consensus 128 l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 178 (454)
+.+.|..+|.|....+-. +....+|.+.|........|+. ++|..+.
T Consensus 168 ~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999886655543 3334477899999998888887 5665554
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.08 E-value=8.7e-07 Score=79.72 Aligned_cols=154 Identities=23% Similarity=0.411 Sum_probs=120.7
Q ss_pred ceEEEeCCCCCCCHHHHHHhhcccCC-eeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCC-CCCceEEEecccc
Q 012896 203 TNVYVKNLSESTTEEDLQKSFGEYGT-ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK-FDDKEWYVGKAQK 280 (454)
Q Consensus 203 ~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~~~v~~~~~ 280 (454)
+.++++||.+..+.+++..+|..... ...-.++ ..||+||.+.+..-|.+|+..+++.. +.|.++.+...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 35899999999999999999976421 1122222 25799999999999999999988765 7888888876655
Q ss_pred ccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHH
Q 012896 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360 (454)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~ 360 (454)
+..+ ++++-|.|+|+..-++-|-.++..||.|+.|.....+.. .-..-|+|.+.+.+.
T Consensus 76 kkqr--------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~ 133 (584)
T KOG2193|consen 76 KKQR--------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHR 133 (584)
T ss_pred HHHH--------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHH
Confidence 4333 234779999999999999999999999999876443321 223456789999999
Q ss_pred HHHHHcCCceecCcceEEEEccch
Q 012896 361 RALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 361 ~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.|++.|+|..+....+++.|-...
T Consensus 134 ~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 134 QAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHHHhhcchHhhhhhhhcccCchh
Confidence 999999999999999999987543
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=1.2e-05 Score=60.42 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=40.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 88 (454)
++.|.|.+++.+++-++|+++|+.||.|..|.+.+... .|+|.|.+.++|+.|+..+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 36799999999999999999999999999998876432 7999999999999999987543
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.02 E-value=2.1e-05 Score=59.17 Aligned_cols=76 Identities=26% Similarity=0.461 Sum_probs=47.9
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CceecCcceEEEE
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN-----GKMVVSKPLYVAL 380 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~-----g~~~~g~~l~v~~ 380 (454)
+.|+|.+++..++.++|++.|+.||.|..|.+.+.. ..|+|.|.+.++|..|+..+. +..|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 458999999999999999999999999999987763 379999999999999998774 3467788888776
Q ss_pred ccchHH
Q 012896 381 AQRKED 386 (454)
Q Consensus 381 ~~~~~~ 386 (454)
-.-.+.
T Consensus 77 LeGeeE 82 (105)
T PF08777_consen 77 LEGEEE 82 (105)
T ss_dssp --HHHH
T ss_pred CCCHHH
Confidence 554443
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.82 E-value=1.4e-05 Score=71.18 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceE--------EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~ 374 (454)
...+|||.++|..+++++|.++|.++|.|.. +.|-++. ++..++-|.|.|.+...|+.|+.-++++.++|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3457999999999999999999999987743 4555554 788999999999999999999999999999999
Q ss_pred ceEEEEccchH
Q 012896 375 PLYVALAQRKE 385 (454)
Q Consensus 375 ~l~v~~~~~~~ 385 (454)
+|+|.+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999986544
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.81 E-value=2.4e-06 Score=76.91 Aligned_cols=154 Identities=23% Similarity=0.363 Sum_probs=119.9
Q ss_pred cceeeecCCcccChHHHhhhhcccC-ceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCc-eeCCceeEEecccc
Q 012896 112 GNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM-LLNDKQVYVGHFLR 189 (454)
Q Consensus 112 ~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~-~~~~~~l~v~~~~~ 189 (454)
..++++||.+.++.++|..+|.... ++..-.+++ .||+||...+...|.+|++.+++. .+.|..+.+.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3589999999999999999997542 122222222 679999999999999999998875 67888888876655
Q ss_pred cccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCC
Q 012896 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (454)
Q Consensus 190 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 269 (454)
+..+ ++.+-|.|+|+....+-+..+...||.+.+|........ .-..-|+|...+.+..|+..+++.++.
T Consensus 76 kkqr--------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 76 KKQR--------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HHHH--------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 5443 345789999999999999999999999998876543221 112346688889999999999999999
Q ss_pred CceEEEeccccc
Q 012896 270 DKEWYVGKAQKK 281 (454)
Q Consensus 270 g~~~~v~~~~~~ 281 (454)
...+.+.+-+..
T Consensus 146 n~~~k~~YiPde 157 (584)
T KOG2193|consen 146 NQHLKVGYIPDE 157 (584)
T ss_pred hhhhhcccCchh
Confidence 999988887654
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.79 E-value=3.9e-05 Score=68.37 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
.....+|+|-+||..+++.+|.++|.+||.|. .|++.+++.++..++-|.|.|.+...|+.|+.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 46678999999999999999999999998763 4788899999999999999999999999999999999999
Q ss_pred CcceeeecccCC
Q 012896 92 GKPIRVMYSHRD 103 (454)
Q Consensus 92 g~~i~v~~~~~~ 103 (454)
+.+|+|.++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999877654
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.72 E-value=8.1e-05 Score=48.10 Aligned_cols=53 Identities=19% Similarity=0.482 Sum_probs=42.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 82 (454)
++.|.|.+.|++..+ +|+.+|..||.|..+.+... ..+.+|.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 367899999977765 45558889999999888622 238999999999999985
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.70 E-value=8.3e-05 Score=65.30 Aligned_cols=76 Identities=21% Similarity=0.475 Sum_probs=61.4
Q ss_pred eEEEecCCCcCCHHHH------HhccccCCCceEEEEeeCC-C-CCcceEE--EEEeCCHHHHHHHHHHcCCceecCcce
Q 012896 307 NLYIKNLDDSIDDEKL------KQLFSPFGSITSCKVMRDP-S-GISRGSG--FVAFSTPEEASRALLEMNGKMVVSKPL 376 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l------~~~f~~~g~v~~~~~~~~~-~-~~~~g~a--fv~f~~~~~A~~a~~~l~g~~~~g~~l 376 (454)
-+||-+||+.+-.++. .++|.+||.|.+|.+-+.. . ....+.+ +|+|.+.+||.+||.+.+|..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4899999998876652 3689999999999886653 1 1112223 999999999999999999999999999
Q ss_pred EEEEcc
Q 012896 377 YVALAQ 382 (454)
Q Consensus 377 ~v~~~~ 382 (454)
+..|..
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 999876
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.65 E-value=9.7e-05 Score=47.74 Aligned_cols=52 Identities=15% Similarity=0.356 Sum_probs=42.4
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~ 363 (454)
+.|-|.+.+....+ ++..+|..||.|.++.+... ..+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 45889999877654 45568999999999998733 458999999999999985
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00014 Score=68.52 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=64.6
Q ss_pred CceEEEecCCCcCC------HHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec-CcceE
Q 012896 305 GANLYIKNLDDSID------DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLY 377 (454)
Q Consensus 305 ~~~l~v~nl~~~~~------~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~-g~~l~ 377 (454)
...|+|.|+|.--. ..-|..+|+++|.|..+.++.++.|..+|+.|++|++..+|..|++.|||..|+ .+++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45699999985322 245678899999999999999988779999999999999999999999999886 56777
Q ss_pred EEEc
Q 012896 378 VALA 381 (454)
Q Consensus 378 v~~~ 381 (454)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 7644
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.56 E-value=0.00042 Score=51.17 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=52.6
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEE-EeeC-------CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCc-c
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCK-VMRD-------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-P 375 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~~~~-------~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~-~ 375 (454)
.+.|.|-+.|+. ....+.+.|++||+|.+.. +.++ +........-|+|+++.+|.+|| ..||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 456889999998 4566779999999987764 2121 10113558999999999999999 8899999986 4
Q ss_pred eEEEEccc
Q 012896 376 LYVALAQR 383 (454)
Q Consensus 376 l~v~~~~~ 383 (454)
+-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 45777753
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.41 E-value=0.0004 Score=59.02 Aligned_cols=99 Identities=26% Similarity=0.321 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceE
Q 012896 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS 334 (454)
Q Consensus 255 ~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~ 334 (454)
-|..|...|++....++.++|.++.. ..|+|.||+..++-|.|.+.|+.||.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-------------------------AELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-------------------------ceEEEEecchhhhhHHHHHhhhhcCccch
Confidence 45666667899999999999999874 24999999999999999999999999999
Q ss_pred EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCc----eecCcceEE
Q 012896 335 CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK----MVVSKPLYV 378 (454)
Q Consensus 335 ~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~----~~~g~~l~v 378 (454)
..+..|..++..+-++|.|...-.|.+|+....-. ...+++.-|
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 88888888999999999999999999999877432 334555555
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.41 E-value=0.00041 Score=61.06 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCCHHHH------HHHHhcCCCeEEEEEEecCCCCCc-ccEE--EEEeCCHHHHHHHHHHhCCcCCC
Q 012896 21 FGTTSLYVGDLEANVTDSQL------YDLFNQMGQVVSVRVCRDLSTRRS-LGYG--YVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l------~~~f~~~G~v~~v~~~~~~~~~~~-~g~a--fV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
.+-.-+||-+||+.+..+++ .++|.+||.|..|.+.+....-++ .+.+ ||.|.+.++|.+++.+.++...+
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 45567899999999888772 568999999999988765422222 1223 99999999999999999999999
Q ss_pred CcceeeecccC
Q 012896 92 GKPIRVMYSHR 102 (454)
Q Consensus 92 g~~i~v~~~~~ 102 (454)
|+.|+..+...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999987654
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.40 E-value=0.00028 Score=62.37 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=65.0
Q ss_pred ceEEEecCCCcCCHHHHHhccccCC--CceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
.++||+||-+.+|++||.+.+...| .+.++++..+. +|+++|||+|...+.....+.++.|-.+.|+|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4799999999999999999998877 46778888776 89999999999999999999999999999999755554
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.37 E-value=0.00014 Score=61.58 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=61.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC--------CC----cccEEEEEeCCHHHHHHHHHHhCCcC
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST--------RR----SLGYGYVNFSNAQEAARALEMLNFTP 89 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~--------~~----~~g~afV~f~~~~~A~~a~~~l~~~~ 89 (454)
....||+++||++.....|+++|+.||.|-.|.+-+.... +. .---+||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999988654433 11 11247899999999999999999999
Q ss_pred CCCcce
Q 012896 90 LNGKPI 95 (454)
Q Consensus 90 ~~g~~i 95 (454)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988653
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.35 E-value=0.00021 Score=65.10 Aligned_cols=69 Identities=19% Similarity=0.383 Sum_probs=58.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEec---CC---CCC-------cccEEEEEeCCHHHHHHHHHHh
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD---LS---TRR-------SLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~---~~---~~~-------~~g~afV~f~~~~~A~~a~~~l 85 (454)
.+.++++|.+.|||.+-..+.|.++|..+|.|..|+|++- .. ... .+-+|+|+|...+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4579999999999999999999999999999999999864 11 111 2568999999999999999987
Q ss_pred CC
Q 012896 86 NF 87 (454)
Q Consensus 86 ~~ 87 (454)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 54
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.34 E-value=0.0011 Score=52.12 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=53.4
Q ss_pred hcCCceEEEecCC-----CcCCH----HHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 302 KFQGANLYIKNLD-----DSIDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 302 ~~~~~~l~v~nl~-----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
+++..||.|.=+. ....+ ++|.+.|..||.|.=+++..+ .-+|+|.+-++|.+|+ .++|..++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEEC
Confidence 3445567776554 12223 377788899999988887665 5899999999999998 89999999
Q ss_pred CcceEEEEccchHH
Q 012896 373 SKPLYVALAQRKED 386 (454)
Q Consensus 373 g~~l~v~~~~~~~~ 386 (454)
|+.|+|+...+...
T Consensus 96 g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 96 GRTLKIRLKTPDWL 109 (146)
T ss_dssp TEEEEEEE------
T ss_pred CEEEEEEeCCccHH
Confidence 99999999877664
No 170
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.34 E-value=0.00028 Score=62.38 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G--~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
..--.+||+||-|++|++||.+.+...| .+.+++++.+...|.++|||+|...+....++.|+.|-...+-|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3445689999999999999999998876 6788999999899999999999999999999999999888887766555
No 171
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.32 E-value=0.00049 Score=58.51 Aligned_cols=89 Identities=24% Similarity=0.355 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCcCCCCcceeeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeE
Q 012896 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGY 154 (454)
Q Consensus 75 ~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~ 154 (454)
..-|..|..+|++....|+.++|.|+... .|+|.||...++.+.+.+.|+.||++....++.|..+...+-
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~a---------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMHA---------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeeccc---------eEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 35677888889999999999999998752 699999999999999999999999999999998888888899
Q ss_pred EEEEecCHHHHHHHHHHh
Q 012896 155 GFVQFDNEESAQKAIEKL 172 (454)
Q Consensus 155 a~V~f~~~~~A~~a~~~l 172 (454)
++|.|...-.|..|+..+
T Consensus 75 g~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRC 92 (275)
T ss_pred chhhhhcchhHHHHHHHh
Confidence 999999999999999876
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.27 E-value=0.00011 Score=62.56 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=54.7
Q ss_pred HHHHhccc-cCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 320 EKLKQLFS-PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 320 ~~l~~~f~-~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
++|...|+ +||.|+++.+..+-.-..+|-++|.|...++|++|++.|||..+.|++|...+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45556665 99999999887765445678899999999999999999999999999999998864
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.14 E-value=0.00024 Score=60.29 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=59.6
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-C--------CCcc----eEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S--------GISR----GSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~--------~~~~----g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
..||+++||+.+....|+++|+.||.|-.|.+-+.. . |.++ --|.|+|.+...|.+....|||..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 469999999999999999999999999999987764 2 2222 24789999999999999999999998
Q ss_pred Ccc
Q 012896 373 SKP 375 (454)
Q Consensus 373 g~~ 375 (454)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 854
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.08 E-value=0.00037 Score=63.52 Aligned_cols=66 Identities=24% Similarity=0.407 Sum_probs=56.0
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeC---C-C--CC--------cceEEEEEeCCHHHHHHHHHHcCCc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD---P-S--GI--------SRGSGFVAFSTPEEASRALLEMNGK 369 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~-~--~~--------~~g~afv~f~~~~~A~~a~~~l~g~ 369 (454)
++++|.+.|||.+-.-+-|.++|+.+|.|..|+|+.. + + +. .+-+|+|+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5678999999999888999999999999999999876 2 2 11 2458999999999999999888643
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.03 E-value=0.0015 Score=56.55 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=54.9
Q ss_pred HHHHHhccccCCCceEEEEeeCCCC--CcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 319 DEKLKQLFSPFGSITSCKVMRDPSG--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 319 ~~~l~~~f~~~g~v~~~~~~~~~~~--~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
++++.+.+.+||.|..|-|...++. ..---.||+|...++|.+|+-.|||+.|+|+.+...|.....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 3678889999999999988776421 112347999999999999999999999999999998876544
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.03 E-value=0.0047 Score=43.06 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=42.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 86 (454)
+......+|+ .|..-...||.++|++||.| .|.-+.+. .|||...+.+.|..++..+.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3344556666 99999999999999999998 55554442 79999999999999999875
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0025 Score=60.39 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCC--CCHHH----HHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC-C
Q 012896 20 QFGTTSLYVGDLEAN--VTDSQ----LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN-G 92 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~--~~e~~----l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g 92 (454)
+.-...|.|-|+|-- ...+. |..+|+++|++....+..+..+| .+||.|++|.+..+|+.|++.|||..++ .
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 456688999999832 22233 45689999999999998776655 8999999999999999999999999886 5
Q ss_pred cceeeec
Q 012896 93 KPIRVMY 99 (454)
Q Consensus 93 ~~i~v~~ 99 (454)
++..+..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 5566543
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.96 E-value=0.0021 Score=55.65 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCCeEEEEEEecCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 38 SQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 38 ~~l~~~f~~~G~v~~v~~~~~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
+++++-|.+||.|..|.|+..+..... .--.||+|...++|.+|+-.||+..|.|+.++..|.+-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 567888999999999999876544322 123699999999999999999999999999998876643
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.95 E-value=0.0021 Score=50.43 Aligned_cols=74 Identities=28% Similarity=0.395 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCCC------CCH---HHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 21 FGTTSLYVGDLEAN------VTD---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 21 ~~~~~l~V~nLp~~------~~e---~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
++..||.|+=+.+. ..+ .+|.+.|+.||.|.-|++..+ .-+|+|.+.++|-+|+. +++..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 55677777766522 222 367888999999988888754 47999999999999999 7999999
Q ss_pred CcceeeecccCC
Q 012896 92 GKPIRVMYSHRD 103 (454)
Q Consensus 92 g~~i~v~~~~~~ 103 (454)
|+.++|..-.++
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999765543
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.93 E-value=0.0021 Score=47.53 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=49.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEE----------ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVC----------RDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~----------~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
...+-|.|-+.|+. ....|.++|++||.|.+..-. .....+ .+--|.|.+..+|.+||.+ |+..+
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~---NWi~I~Y~~~~~A~rAL~~-NG~i~ 78 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG---NWIHITYDNPLSAQRALQK-NGTIF 78 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT---TEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC---CEEEEECCCHHHHHHHHHh-CCeEE
Confidence 34567899999977 566789999999999887500 111222 3889999999999999995 99888
Q ss_pred CCccee
Q 012896 91 NGKPIR 96 (454)
Q Consensus 91 ~g~~i~ 96 (454)
.|..+-
T Consensus 79 ~g~~mv 84 (100)
T PF05172_consen 79 SGSLMV 84 (100)
T ss_dssp TTCEEE
T ss_pred cCcEEE
Confidence 876543
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.89 E-value=0.0016 Score=61.93 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccC-CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee---cCcceEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPF-GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV---VSKPLYV 378 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~---~g~~l~v 378 (454)
..+..|+|.||-.-+|.-+|+.++.+- |.|++.-|.+- +..|||.|.+.++|.....+|||..+ +++.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 345679999999999999999999854 56666633222 44799999999999999999999877 5799999
Q ss_pred EEccchHHH
Q 012896 379 ALAQRKEDR 387 (454)
Q Consensus 379 ~~~~~~~~~ 387 (454)
.|+......
T Consensus 517 df~~~deld 525 (718)
T KOG2416|consen 517 DFVRADELD 525 (718)
T ss_pred eecchhHHH
Confidence 999866654
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.84 E-value=0.0082 Score=46.38 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=61.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCH----HHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 15 GANANQFGTTSLYVGDLEANVTD----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e----~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
.....+++..||.|+=|..+... ..|.+.++.||+|.+|..+-. -.|.|.|.+..+|-+|+..++. ..
T Consensus 78 kk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~ 149 (166)
T PF15023_consen 78 KKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RA 149 (166)
T ss_pred cccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CC
Confidence 34566889999999888766443 345566788999999988632 2799999999999999998775 56
Q ss_pred CCcceeeecccC
Q 012896 91 NGKPIRVMYSHR 102 (454)
Q Consensus 91 ~g~~i~v~~~~~ 102 (454)
.|..+...|-+.
T Consensus 150 pgtm~qCsWqqr 161 (166)
T PF15023_consen 150 PGTMFQCSWQQR 161 (166)
T ss_pred CCceEEeecccc
Confidence 677777766543
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.65 E-value=0.0062 Score=47.03 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=56.6
Q ss_pred hcCCceEEEecCCCcC----CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 302 KFQGANLYIKNLDDSI----DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
.++..+|.|+=|..++ +-..+...++.||+|.+|...- +--|.|.|++..+|-+|+.+++. ...|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 3455678887665544 2244556678999999998764 33699999999999999999987 66788899
Q ss_pred EEEcc
Q 012896 378 VALAQ 382 (454)
Q Consensus 378 v~~~~ 382 (454)
++|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 98854
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.57 E-value=0.035 Score=41.96 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=55.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~-G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
.....+..+.+-..|+.++-++|..+.+.+ ..|..++|+++.. .++..+++.|.+.++|......+||+.|..
T Consensus 8 ~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 8 PDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344445566666666666667777777766 4678899998743 466789999999999999999999998853
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.53 E-value=0.013 Score=38.80 Aligned_cols=54 Identities=26% Similarity=0.438 Sum_probs=44.1
Q ss_pred ceEEEecCCCcCCHHHHHhccccC---CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPF---GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 366 (454)
.+|+|.++.. ++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4699999854 7888899999988 235678887774 3899999999999999765
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.35 E-value=0.0018 Score=55.25 Aligned_cols=62 Identities=31% Similarity=0.520 Sum_probs=50.8
Q ss_pred HHHHHh-cCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 40 LYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 40 l~~~f~-~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
|...|+ +||.|+++.+..+. .....|-++|.|...++|++|+..||+..|.|++|...++.-
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 333344 88999999887653 334578899999999999999999999999999999987653
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.31 E-value=0.0052 Score=51.26 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=48.0
Q ss_pred CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcC--CceecCcceEEEEccchH
Q 012896 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 318 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~--g~~~~g~~l~v~~~~~~~ 385 (454)
..+.|+++|..|+.+..+..++. -+-..|.|.+.++|.+|...|+ +..+.|..++|-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 35789999999999999888776 4468999999999999999999 999999999999995443
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.28 E-value=0.027 Score=37.29 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=44.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~----G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 85 (454)
.-+|+|+|+. +++.++|+.+|..| ++. .|.-+-|. .|=|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999995 79999999999998 653 56655553 5899999999999999754
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.21 E-value=0.0052 Score=51.16 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=45.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhc-CCCe---EEEEEEe-cCCCCC-cccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQ-MGQV---VSVRVCR-DLSTRR-SLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~-~G~v---~~v~~~~-~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+....+|.||+||+.+||+++.+.+++ ++.- ..+.-.. +...+. .-.-|||.|.+.+++......+++..|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 345579999999999999999998887 5544 2222111 111111 12459999999999999999999877743
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.18 E-value=0.022 Score=39.85 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=42.4
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 367 (454)
+..||--..|..+-..||.++|++||.| .|..+.+. -|||...+.+.|..|+..+.
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 3345555599999999999999999987 56666552 59999999999999998886
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.62 E-value=0.1 Score=39.42 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=54.1
Q ss_pred ceEEEecC-CCcCCHHHHHhccccCC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC---cceEEEE
Q 012896 306 ANLYIKNL-DDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS---KPLYVAL 380 (454)
Q Consensus 306 ~~l~v~nl-~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g---~~l~v~~ 380 (454)
+.|.+--. |..++.++|..+.+.+- .|..++|+++... ++-.+++.|.+.++|..-...+||+.++. ...+|-|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 34444444 45566677776666664 5788999988543 47789999999999999999999998763 3444444
Q ss_pred c
Q 012896 381 A 381 (454)
Q Consensus 381 ~ 381 (454)
-
T Consensus 92 V 92 (110)
T PF07576_consen 92 V 92 (110)
T ss_pred E
Confidence 4
No 192
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.56 E-value=0.3 Score=43.05 Aligned_cols=156 Identities=13% Similarity=0.214 Sum_probs=102.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecC-------CCCCcccEEEEEeCCHHHHHHHHHH----h
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL-------STRRSLGYGYVNFSNAQEAARALEM----L 85 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~-------~~~~~~g~afV~f~~~~~A~~a~~~----l 85 (454)
..++-.+|.|++.|+..+++-..+...|-+||+|++|.++.+. ...+......+.|-+.+.+-..-.. |
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999865 1123345789999999887654332 2
Q ss_pred C--CcCCCCcceeeecccCC--C----c------------------cccCCCcceeeecCCcccChHHHh----hhhccc
Q 012896 86 N--FTPLNGKPIRVMYSHRD--P----S------------------LRKSGAGNIFIKNLDKAIDHKALH----DTFSAF 135 (454)
Q Consensus 86 ~--~~~~~g~~i~v~~~~~~--~----~------------------~~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~ 135 (454)
. ...+....+.+.|..-. . . ......+.|.|. +...++.+++. .++..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccC
Confidence 2 23345666666554310 0 0 011123444443 22333333322 222222
Q ss_pred C----ceeEEEEeeCC---CCCeeeEEEEEecCHHHHHHHHHHhc
Q 012896 136 G----NILSCKVATDL---NGQSKGYGFVQFDNEESAQKAIEKLN 173 (454)
Q Consensus 136 g----~v~~~~~~~~~---~~~~~g~a~V~f~~~~~A~~a~~~l~ 173 (454)
+ -+++|.++... ...++.||.+.|-+...|...+..+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2 36778887653 35678899999999999999998775
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.47 E-value=0.01 Score=55.16 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=67.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCH-HHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 16 ANANQFGTTSLYVGDLEANVTD-SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e-~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
......+.+.|-+.-.|..... .+|..+|.+||.|..|.+-... -.|.|+|.+..+|-+|-. .++..|+++.
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~ 437 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRF 437 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCce
Confidence 3445678889999999988655 6899999999999999885431 269999999999977777 5899999999
Q ss_pred eeeecccCCC
Q 012896 95 IRVMYSHRDP 104 (454)
Q Consensus 95 i~v~~~~~~~ 104 (454)
|++.|-+...
T Consensus 438 iKl~whnps~ 447 (526)
T KOG2135|consen 438 IKLFWHNPSP 447 (526)
T ss_pred eEEEEecCCc
Confidence 9999988764
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.41 E-value=0.013 Score=56.14 Aligned_cols=82 Identities=23% Similarity=0.217 Sum_probs=64.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC---
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL--- 90 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~-~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--- 90 (454)
..+.....+..|+|+||--..|.-.|+.++. .+|.|++.||-+-+. .|||.|.+.++|......||+..+
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS------hCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS------HCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc------ceeEecccHHHHHHHHHHHhccccCCC
Confidence 3445667899999999999999999999998 567888887744332 699999999999999999998655
Q ss_pred CCcceeeecccC
Q 012896 91 NGKPIRVMYSHR 102 (454)
Q Consensus 91 ~g~~i~v~~~~~ 102 (454)
+++.|.+.|...
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 345555555443
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.22 E-value=0.078 Score=44.20 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=50.7
Q ss_pred CceEEEecCCCcCCHHHHHhcccc-CCCc---eEEEEeeCC--CC-CcceEEEEEeCCHHHHHHHHHHcCCceecC----
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSP-FGSI---TSCKVMRDP--SG-ISRGSGFVAFSTPEEASRALLEMNGKMVVS---- 373 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~-~g~v---~~~~~~~~~--~~-~~~g~afv~f~~~~~A~~a~~~l~g~~~~g---- 373 (454)
..+|.|++||+.+|++++.+.+++ ++.- ..+.-.... .. .....|+|.|.+.++...-...++|..|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 457999999999999999998887 6654 333311221 11 123469999999999999999999988753
Q ss_pred -cceEEEEcc
Q 012896 374 -KPLYVALAQ 382 (454)
Q Consensus 374 -~~l~v~~~~ 382 (454)
.+-.|.+|-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 344555653
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.97 E-value=0.011 Score=54.91 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=60.1
Q ss_pred ceEEEecCCCcC-CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 306 ANLYIKNLDDSI-DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 306 ~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
+.|-+.-.|... +..+|..+|.+||.|..|.+... .-.|.|+|.+..+|-+|. +.++..|+++.|+|.|-.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 345566666654 56899999999999999988554 236999999999998887 89999999999999998763
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.94 E-value=0.012 Score=52.57 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=59.6
Q ss_pred eEEEecCCCcCCHHHHH---hccccCCCceEEEEeeCCC--C--CcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 307 NLYIKNLDDSIDDEKLK---QLFSPFGSITSCKVMRDPS--G--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~--~--~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
-+||-+|+..+.++.+. +.|.+||.|.+|.+.++.. . ....-++|+|...++|..||...+|...+|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888898876655554 4788999999998887652 1 112348999999999999999999999999997777
Q ss_pred Ecc
Q 012896 380 LAQ 382 (454)
Q Consensus 380 ~~~ 382 (454)
+..
T Consensus 159 ~gt 161 (327)
T KOG2068|consen 159 LGT 161 (327)
T ss_pred hCC
Confidence 665
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.77 E-value=0.079 Score=50.54 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=54.1
Q ss_pred CceEEEecCCCcCCHHHHHhccc--cCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceecCcceEEE
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFS--PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVA 379 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~--~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g--~~~~g~~l~v~ 379 (454)
++-|.++-||...-.|+++.+|. .+-.+.+|.+-.+.+ .||+|++..||+.|.+.|.- +.|.|++|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 34577899999999999999996 466788998866533 69999999999999988753 35566655443
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.42 E-value=0.14 Score=35.79 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=36.7
Q ss_pred CcCCHHHHHhccccCC-----CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 315 DSIDDEKLKQLFSPFG-----SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 315 ~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
..++..+|..++..-+ .|-.++|..+ |+||+-.. +.|..++..|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577888888886554 3556777655 89999987 6899999999999999999999864
No 200
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.18 E-value=0.027 Score=56.34 Aligned_cols=74 Identities=30% Similarity=0.363 Sum_probs=63.9
Q ss_pred EEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee--cCcceEEEEccchH
Q 012896 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVALAQRKE 385 (454)
Q Consensus 308 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~--~g~~l~v~~~~~~~ 385 (454)
..+.|.+...+-..|..+|+.||.|.+.+.+++ -..|.|+|.+.+.|..|+++|+|+++ .|-+.+|.||+..+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 456667777788899999999999999998887 44799999999999999999999866 58999999998655
Q ss_pred H
Q 012896 386 D 386 (454)
Q Consensus 386 ~ 386 (454)
.
T Consensus 376 ~ 376 (1007)
T KOG4574|consen 376 M 376 (1007)
T ss_pred c
Confidence 3
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.07 E-value=0.19 Score=46.89 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=60.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~-G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
..++.|+|-.+|...+-.||..|+..+ -.|.+|++++|. ..++-..+|.|.+.++|......+||..|.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 338999999999999999999998876 478999999963 345668999999999999999999999885
No 202
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.84 E-value=0.25 Score=33.35 Aligned_cols=55 Identities=16% Similarity=0.389 Sum_probs=43.7
Q ss_pred cCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEE
Q 012896 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (454)
Q Consensus 316 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v 378 (454)
.++.++++..+..|+ .. +|+.++ .|| ||.|.+..+|.++....+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999994 33 444453 456 99999999999999999999887766654
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.73 E-value=2 Score=38.11 Aligned_cols=168 Identities=12% Similarity=0.180 Sum_probs=100.7
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC--------CCCceeEEEEEeCChHHHHHHHHH----Hc--CC
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG--------DGKSKCFGFVNFENSDDAARAVEA----LN--GK 266 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~--------~~~~~g~afv~f~~~~~a~~a~~~----l~--~~ 266 (454)
.++.|...|+...+.-..+...|.+||+|+++.++... .........+.|-+.+.+..-... +. ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999875 223345678889888876554322 21 13
Q ss_pred CCCCceEEEeccccccHH-------HHHHHHHHHHh-hHHHhhhcCCceEEEecCCCcC-CHHHHHhcc---ccCC----
Q 012896 267 KFDDKEWYVGKAQKKSER-------ELELKHQFEQN-MKEAADKFQGANLYIKNLDDSI-DDEKLKQLF---SPFG---- 330 (454)
Q Consensus 267 ~~~g~~~~v~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f---~~~g---- 330 (454)
.+....+.+.+..-.-.. +.......... ..+-.....+++|.|.=- ..+ .++.+.+.+ ..=+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 345555555554321000 00000000011 111222334667877643 334 333333322 2222
Q ss_pred CceEEEEeeCC---CCCcceEEEEEeCCHHHHHHHHHHcCCc
Q 012896 331 SITSCKVMRDP---SGISRGSGFVAFSTPEEASRALLEMNGK 369 (454)
Q Consensus 331 ~v~~~~~~~~~---~~~~~g~afv~f~~~~~A~~a~~~l~g~ 369 (454)
.+++|.++... +.-+..||.++|-+..+|...++-+.-.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 46778877653 2345789999999999999999887643
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.67 E-value=0.18 Score=42.22 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=45.5
Q ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CcCCCCcceeeecccCC
Q 012896 36 TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 36 ~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i~v~~~~~~ 103 (454)
..+.|+++|..++.+..+.+.+.-. =..|.|.+.+.|.+|...|+ +..|.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999999888887776432 47999999999999999999 88999999999988543
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.59 E-value=0.046 Score=48.99 Aligned_cols=83 Identities=16% Similarity=0.319 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHH---HHhcCCCeEEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYD---LFNQMGQVVSVRVCRDLS---TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~---~f~~~G~v~~v~~~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
.....+||-+|+.....+.+.+ .|.+||.|..|.+.++.. ......-++|.|...++|..|+...++....|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4456788899998877666544 788999999999988652 1122345899999999999999999999999999
Q ss_pred eeeecccCC
Q 012896 95 IRVMYSHRD 103 (454)
Q Consensus 95 i~v~~~~~~ 103 (454)
++..+....
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 888766544
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.36 E-value=0.24 Score=46.27 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=58.3
Q ss_pred CceEEEecCCCcCCHHHHHhccccCC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
++.|+|-.+|..+|..||..++..+- .|.++++++|... .+-..+|.|.+.++|..-.+.+||+.|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 56799999999999999999998764 6889999997543 3667999999999999999999999876
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.18 E-value=0.26 Score=47.25 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=57.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhc--CCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CcCCCCc
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGK 93 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~--~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~ 93 (454)
.....-|.|+||-||..+.+++|+.+|+. |-++.++.+-.+. + =||.|.+..||+.|.+.|. -..|.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 34566688999999999999999999974 6677888876542 1 3999999999999998875 3456777
Q ss_pred ceee
Q 012896 94 PIRV 97 (454)
Q Consensus 94 ~i~v 97 (454)
+|..
T Consensus 243 pImA 246 (684)
T KOG2591|consen 243 PIMA 246 (684)
T ss_pred chhh
Confidence 6643
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.17 E-value=0.32 Score=32.88 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 34 NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 34 ~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
.++-++++..++.|+. ..|. .++ + || ||.|.+.++|+++....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4778899999999975 3443 332 3 34 89999999999999998888877766554
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.97 E-value=0.073 Score=53.42 Aligned_cols=76 Identities=30% Similarity=0.403 Sum_probs=62.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC--CCcceeeecccC
Q 012896 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL--NGKPIRVMYSHR 102 (454)
Q Consensus 25 ~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~i~v~~~~~ 102 (454)
+..+.|.+-..+-.-|..+|+.||.|.+.|..++.. .|.|+|.+.+.|..|++.|+|++. .|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344555666677788999999999999999988643 799999999999999999999876 588999999886
Q ss_pred CCcc
Q 012896 103 DPSL 106 (454)
Q Consensus 103 ~~~~ 106 (454)
-+..
T Consensus 374 ~~~~ 377 (1007)
T KOG4574|consen 374 LPMY 377 (1007)
T ss_pred cccc
Confidence 5433
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.95 E-value=0.42 Score=42.19 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=53.6
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCc-ceEEEEccchH
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYVALAQRKE 385 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~-~l~v~~~~~~~ 385 (454)
=|-|-++|+.-. .-|..+|++||.|.+..-. .+ -.+..|.|.++-+|.+|| .-||+.|+|. .|-|+-+..+.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCCHH
Confidence 377778887643 4577899999999877654 23 348999999999999999 7789999875 44565544433
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=1.1 Score=39.74 Aligned_cols=64 Identities=25% Similarity=0.266 Sum_probs=49.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
..=|-|-+.|+.. -.-|..+|++||.|...... .+++ +-.|.|.+..+|++|+.+ +++.|+|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~ngN---wMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SNGN---WMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CCCc---eEEEEecchhHHHHhhhh-cCeeeccce
Confidence 4557777887543 34688999999998776543 3344 889999999999999996 888888755
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.94 E-value=0.16 Score=36.48 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=45.3
Q ss_pred EEEEeCCHHHHHHHHHHhC-CcCCCCcceeeecccCC-------CccccCCCcceeeecCCcccChHHHhhhhc
Q 012896 68 GYVNFSNAQEAARALEMLN-FTPLNGKPIRVMYSHRD-------PSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133 (454)
Q Consensus 68 afV~f~~~~~A~~a~~~l~-~~~~~g~~i~v~~~~~~-------~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 133 (454)
|+|+|.+..=|++.+..-. ...+.+..+.|..+.-. .-......++|.|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999998522 12345555555433211 112234568899999999999999987654
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.07 E-value=1.5 Score=30.58 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhcCC-----CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 34 NVTDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 34 ~~~e~~l~~~f~~~G-----~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
.++..+|..++...+ .|-.|.+..+ |+||+-... .|..++..|++..+.|+.++|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 467788888876653 5667877653 889988765 88999999999999999999874
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=3.3 Score=40.29 Aligned_cols=126 Identities=18% Similarity=0.258 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHhcC----CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 19 NQFGTTSLYVGDLEAN-VTDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~-~~e~~l~~~f~~~----G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
....+++|-|.|+.|+ +.-.+|.-+|+.| |.|.+|.|+.... | ..+|..-.+.|-
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-G-------------------keRM~eEeV~GP 229 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-G-------------------KERMKEEEVHGP 229 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-h-------------------HHHhhhhcccCC
Confidence 3567899999999998 6667999999877 6999999987421 1 223444445555
Q ss_pred ceeeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhc
Q 012896 94 PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN 173 (454)
Q Consensus 94 ~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~ 173 (454)
++.+........... -....-++..+..+.+|+ +...+ .-||.|+|.+.+.|......++
T Consensus 230 ~~el~~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq-~~rLk---------YYyAVvecDsi~tA~~vYe~CD 289 (650)
T KOG2318|consen 230 PKELFKPVEEYKESE----------SDDEEEEDVDREKLRQYQ-LNRLK---------YYYAVVECDSIETAKAVYEECD 289 (650)
T ss_pred hhhhccccccCcccc----------cchhhhhhHHHHHHHHHH-hhhhe---------eEEEEEEecCchHHHHHHHhcC
Confidence 444432222111110 001111122345555553 21222 2389999999999999999999
Q ss_pred CceeCCceeEE
Q 012896 174 GMLLNDKQVYV 184 (454)
Q Consensus 174 ~~~~~~~~l~v 184 (454)
|..+......+
T Consensus 290 G~EfEsS~~~~ 300 (650)
T KOG2318|consen 290 GIEFESSANKL 300 (650)
T ss_pred cceecccccee
Confidence 99887554443
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.37 E-value=0.29 Score=48.01 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=62.1
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
++..++||+|+...+..+-++.+...+|.|.+++... |+|..|..+..+.+|+..++-..++|..+.+.-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4566899999999999999999999999999887654 899999999999999999998888888777764
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=85.98 E-value=0.47 Score=38.66 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=54.5
Q ss_pred ceEEEecCCCcCCH-----HHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCc-ceEEE
Q 012896 306 ANLYIKNLDDSIDD-----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYVA 379 (454)
Q Consensus 306 ~~l~v~nl~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~-~l~v~ 379 (454)
+++.+.+++..+.. .....+|.+|-+.....+++. .++.-|.|.+.+.|..|...+++..|.|+ .+..-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45777777765422 334456666655555555554 55678889999999999999999999998 88888
Q ss_pred EccchHH
Q 012896 380 LAQRKED 386 (454)
Q Consensus 380 ~~~~~~~ 386 (454)
|+.+...
T Consensus 86 faQ~~~~ 92 (193)
T KOG4019|consen 86 FAQPGHP 92 (193)
T ss_pred EccCCCc
Confidence 8865443
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.81 E-value=2 Score=30.99 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=45.3
Q ss_pred EEEEecCHHHHHHHHHHh-cCceeCCceeEE--eccccccc-chhhhccCccceEEEeCCCCCCCHHHHHHhhc
Q 012896 155 GFVQFDNEESAQKAIEKL-NGMLLNDKQVYV--GHFLRKQE-RDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224 (454)
Q Consensus 155 a~V~f~~~~~A~~a~~~l-~~~~~~~~~l~v--~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 224 (454)
|+|+|.++.-|++.++.- +...+.+..+.+ .+...... .-........+++.+.|+|....+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 679999999999988732 223455555444 33322221 11222344557899999999999999987643
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=4 Score=39.82 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=62.0
Q ss_pred cCCceEEEecCCC-cCCHHHHHhccccC----CCceEEEEeeCCCCC---------------------------------
Q 012896 303 FQGANLYIKNLDD-SIDDEKLKQLFSPF----GSITSCKVMRDPSGI--------------------------------- 344 (454)
Q Consensus 303 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~----g~v~~~~~~~~~~~~--------------------------------- 344 (454)
..+.+|-|-|+.+ .+...+|.-+|+.| |.|.+|.|.+..-|+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3566799999998 58899999999866 589999987653221
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHcCCceec--CcceEEEEc
Q 012896 345 ---------------SRGSGFVAFSTPEEASRALLEMNGKMVV--SKPLYVALA 381 (454)
Q Consensus 345 ---------------~~g~afv~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~~ 381 (454)
.--||.|+|.+.+.|......-+|..+. +..|-++|-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0148999999999999999999999987 455666554
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.07 E-value=1.6 Score=35.51 Aligned_cols=115 Identities=15% Similarity=0.038 Sum_probs=75.4
Q ss_pred EEEcCCC--CCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 26 LYVGDLE--ANVTDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 26 l~V~nLp--~~~~e~~l~~~f~~-~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
..|+.+. .+.+-..|.+.+.+ ++....+.+..- ..++..+.|.+.+++.++++. ..-.+.+..+.+...++
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcc
Confidence 4444443 23567777776654 343333444321 124789999999999999984 55667788888876664
Q ss_pred CCccccCC----CcceeeecCCcc-cChHHHhhhhcccCceeEEEEeeC
Q 012896 103 DPSLRKSG----AGNIFIKNLDKA-IDHKALHDTFSAFGNILSCKVATD 146 (454)
Q Consensus 103 ~~~~~~~~----~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~ 146 (454)
........ .-=|.+.|||.. .+++-+..+.+.+|.+..+.....
T Consensus 92 ~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 92 DFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 43222211 223677899986 577888899999999988877654
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=78.23 E-value=2.7 Score=41.68 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
-++.-+|||+|+-..+.++-++..+..||-|.+..... |+|..|......-+|+..++...++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 36778999999999999999999999999887776543 899999999999999999998888888776654
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.45 E-value=5.2 Score=35.20 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=35.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHH
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~ 77 (454)
.-|+++|||.++.-.||+..+++.+.+ -..+.-. -+.|-||+-|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccC
Confidence 349999999999999999999987643 2333211 134579999987643
No 222
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=68.82 E-value=5.3 Score=37.00 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecC-CCCC-cccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDL-STRR-SLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G-~v~~v~~~~~~-~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
.-.+|.|++||+..++++|.+.+.++- .|....+.+.. .... -.+.|||.|...++.......+++..|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 447899999999999999999888763 23333333211 1111 1357999999999988888887776553
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=63.98 E-value=21 Score=25.50 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=42.5
Q ss_pred EEEecCCCcCCHHHHHhcccc-CC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 012896 308 LYIKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (454)
Q Consensus 308 l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 366 (454)
-+.--++...+..+|++.++. || .|.+|.......+ ..-|+|++..-++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 555667888999999998876 56 5788877665433 335999999999988876544
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.90 E-value=25 Score=24.70 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=42.4
Q ss_pred eEEEecCCCcCCHHHHHhcccc-CC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 366 (454)
+-|+-.++...+..+|+..++. || .|.+|....-..+ ..-|||++..-++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 3566678899999999988876 55 5777776555432 335999999888887765544
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.14 E-value=38 Score=24.22 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=42.2
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012896 27 YVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 27 ~V~nLp~~~~e~~l~~~f~~-~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 85 (454)
|.-.+..+++..+|++.++. || +|..|+...-+.. ..-|||.+...++|...-.++
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 44446678999999999886 45 7888887765432 236999999999999887654
No 226
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.93 E-value=1.5 Score=42.28 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=56.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
-...|+|+++|+++.++-++|..+|+.+--+..+-+......++...+.||.|+-.-+..-|+..||+.......
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 466789999999999999999999998744445544433333444557899999998888888888876655433
No 227
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=60.64 E-value=46 Score=23.37 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=42.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012896 26 LYVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 26 l~V~nLp~~~~e~~l~~~f~~-~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 85 (454)
-|+-.++.+.+..+|++.++. || +|..|+...-+. ...-|||.+...++|..+-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 455567789999999998886 45 777887766542 2236999999999998876653
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.13 E-value=15 Score=24.32 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.9
Q ss_pred HHHHhccccCCCceEEEEeeC
Q 012896 320 EKLKQLFSPFGSITSCKVMRD 340 (454)
Q Consensus 320 ~~l~~~f~~~g~v~~~~~~~~ 340 (454)
.+||++|+..|.|.-+.+-.-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 689999999999977666443
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.65 E-value=13 Score=28.54 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=31.0
Q ss_pred EEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHH-HHHHHH
Q 012896 25 SLYVGDLEANV---------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE-AARALE 83 (454)
Q Consensus 25 ~l~V~nLp~~~---------~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~-A~~a~~ 83 (454)
++.|-|+|... ..++|++.|+.|.++ .++...++. -++|+++|+|.+.-. -..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 56777886543 346899999999887 466666543 367899999998743 344443
No 230
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=52.31 E-value=13 Score=30.56 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=47.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
.++++.. |.+...++|.++-+ |.+..|..-+.... ...+|.-||+|.+.++|...+.. +...+....+...+
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 3555555 45555566777766 78888877554221 24578999999999999998875 44444444444443
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=50.16 E-value=39 Score=22.48 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=17.5
Q ss_pred HHHHHhhcccCCeeEEEEEECC
Q 012896 217 EDLQKSFGEYGTITSAVVMRDG 238 (454)
Q Consensus 217 ~~l~~~f~~~g~v~~~~~~~~~ 238 (454)
.+|+++|+..|.|.-..+....
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5899999999998876665543
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=48.53 E-value=34 Score=26.27 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=27.2
Q ss_pred ceeeecCCccc---------ChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHH
Q 012896 113 NIFIKNLDKAI---------DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164 (454)
Q Consensus 113 ~l~v~nlp~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~ 164 (454)
.+.|.|++... +.++|.+.|+.|.++. ++.+.+.. .+.|+++|.|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChH
Confidence 35566665443 5678999999998875 44555443 457899999976553
No 233
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.65 E-value=33 Score=23.39 Aligned_cols=62 Identities=13% Similarity=0.281 Sum_probs=45.0
Q ss_pred HHHHHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 38 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 38 ~~l~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
++|.+-|...| +|..|.-++.+.++.....-||++....+...+ ++-..+.+..++|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 46788888887 888998888776666666778888888764443 344667788888876543
No 234
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=44.06 E-value=16 Score=30.05 Aligned_cols=74 Identities=26% Similarity=0.393 Sum_probs=51.8
Q ss_pred cEEEEcCCCCCCCH-----HHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc-ceee
Q 012896 24 TSLYVGDLEANVTD-----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK-PIRV 97 (454)
Q Consensus 24 ~~l~V~nLp~~~~e-----~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~i~v 97 (454)
.++.+.+++..+-. .....+|.+|.+.....+++.. +.-.|.|.+.+.|..|...++...|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 34666666644221 1234467777665555555432 3578999999999999999999999988 7888
Q ss_pred ecccCC
Q 012896 98 MYSHRD 103 (454)
Q Consensus 98 ~~~~~~ 103 (454)
.++...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 877755
No 235
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=43.05 E-value=16 Score=29.48 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=54.3
Q ss_pred eeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccccchhhhccCccceEEEeCCCCC-CCHHHHHHhhcccCCee
Q 012896 152 KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTIT 230 (454)
Q Consensus 152 ~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~ 230 (454)
.++..+.|.+.+++.+++. .....+.+..+.+..-.+.............-=+.+.+||.. .+++-+..+.+..|.+.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 4588999999999999887 344556666666654432222111111111122567899987 57788888899999987
Q ss_pred EEEEEE
Q 012896 231 SAVVMR 236 (454)
Q Consensus 231 ~~~~~~ 236 (454)
.+....
T Consensus 134 ~vD~~t 139 (153)
T PF14111_consen 134 EVDENT 139 (153)
T ss_pred EEEcCC
Confidence 776443
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=40.97 E-value=26 Score=31.01 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=36.0
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCC-ceEEEEeeCCCCCcceEEEEEeCCHH
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDPSGISRGSGFVAFSTPE 357 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~g~afv~f~~~~ 357 (454)
.+-|+++||+.++-..||+..+.+-+. ..++.+-- ++|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 345999999999999999999987763 33444422 3677999998754
No 237
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.84 E-value=1.4e+02 Score=28.24 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=44.9
Q ss_pred CCCcceeeecCCcccChHHHhhhhcccCc-eeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHH
Q 012896 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGN-ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIE 170 (454)
Q Consensus 109 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~ 170 (454)
.-...|-|.+.|.....++|...|..|+. -.+|..+.+ ..+|-.|.+...|..|+.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh
Confidence 34567899999999999999999999963 445555543 268899999999999997
No 238
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=39.77 E-value=1e+02 Score=23.27 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEe
Q 012896 30 DLEANVTDSQLYDLFNQMGQVVSVRVCR 57 (454)
Q Consensus 30 nLp~~~~e~~l~~~f~~~G~v~~v~~~~ 57 (454)
=||+-++. |.+.|+.=|+|.+|....
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvt 35 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVT 35 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEe
Confidence 37777654 999999999999987654
No 239
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=39.73 E-value=24 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEE
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV 53 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v 53 (454)
.......+|++-|+|..++++.|.++.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 456778999999999999999999999999865444
No 240
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.13 E-value=59 Score=30.51 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~-v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 84 (454)
-...|-|.++|.....+||...|+.|+. =-.|.-+-+. .||-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3468999999999999999999999852 2234333332 699999999999999984
No 241
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.24 E-value=5.5 Score=37.41 Aligned_cols=79 Identities=6% Similarity=-0.039 Sum_probs=64.1
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
.-++..+|...+++++.-+|.-||-|..+.+-+.. .+-..-.+|++-.+ ++|..++..+.-..+.|..+++.++....
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 35677888899999999999999999988876654 44556688998876 77888888888888899999999886544
Q ss_pred H
Q 012896 386 D 386 (454)
Q Consensus 386 ~ 386 (454)
.
T Consensus 84 ~ 84 (572)
T KOG4365|consen 84 E 84 (572)
T ss_pred h
Confidence 3
No 242
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=38.04 E-value=28 Score=30.68 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=51.9
Q ss_pred cCCceEEEecCCCc------------CCHHHHHhccccCCCceEEEEeeCC------CCCc-----ceE---------EE
Q 012896 303 FQGANLYIKNLDDS------------IDDEKLKQLFSPFGSITSCKVMRDP------SGIS-----RGS---------GF 350 (454)
Q Consensus 303 ~~~~~l~v~nl~~~------------~~~~~l~~~f~~~g~v~~~~~~~~~------~~~~-----~g~---------af 350 (454)
....+|++.+||-. .+++.|+..|..||.|..|.|+.-. +|+. .|| |+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34457888888843 3678999999999999998886531 3332 233 33
Q ss_pred EEeCCHHHHHHHHHHcCCcee----cC----cceEEEEccc
Q 012896 351 VAFSTPEEASRALLEMNGKMV----VS----KPLYVALAQR 383 (454)
Q Consensus 351 v~f~~~~~A~~a~~~l~g~~~----~g----~~l~v~~~~~ 383 (454)
|+|..-..-..|+.+|.|..+ .| ..++|.|.+.
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 455444455667777777643 22 4667777654
No 243
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=37.29 E-value=55 Score=22.33 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=43.9
Q ss_pred HHHHHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 38 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 38 ~~l~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
++|++-|...| +|..|..+....++.....=+|+.....+-.. -|+-..+.+..+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 88999988877766666667888877765554 244566678888886544
No 244
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.70 E-value=5.1 Score=38.87 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=53.5
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
..++|++.|+++..+..+|..++..+-.+..+-+.... ..+..-+..|+|+---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 45679999999999999999999998766666654443 2333457889998888888888888887654
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=34.86 E-value=1.1e+02 Score=24.56 Aligned_cols=56 Identities=11% Similarity=0.287 Sum_probs=39.3
Q ss_pred EEEecCCCcCCHHHHHhcccc-CC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 012896 308 LYIKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365 (454)
Q Consensus 308 l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~ 365 (454)
-++--++...+..+|++.++. |+ .|.+|..+....|. .-|||.+....+|......
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHh
Confidence 455567888899999988876 55 57777766655442 3499999887776655433
No 246
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=33.97 E-value=57 Score=30.53 Aligned_cols=68 Identities=13% Similarity=0.325 Sum_probs=49.3
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCC-ceEEEEeeCCC---CCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~---~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
...|.|.+||+..++++|.+...++-. |....+.+... ....+.|+|.|...++...-...++|..+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 356899999999999999998888753 33333332221 223567999999999988777788887663
No 247
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.81 E-value=20 Score=33.57 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred CcEEEEcCCCCCCCHH--------HHHHHHhc--CCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 012896 23 TTSLYVGDLEANVTDS--------QLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~--------~l~~~f~~--~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 84 (454)
-|.+|+.+.......+ ++...|.+ +++...|...++....+++|.-|++|+..+.++++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 3556666666554444 89999998 68888999988887788899999999999999999864
No 248
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.86 E-value=1.2e+02 Score=28.71 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhcCCceEEEecCCC-cCCHHHHHhccccC----CCceEEEEeeCCCCCcce----------------------------
Q 012896 301 DKFQGANLYIKNLDD-SIDDEKLKQLFSPF----GSITSCKVMRDPSGISRG---------------------------- 347 (454)
Q Consensus 301 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~----g~v~~~~~~~~~~~~~~g---------------------------- 347 (454)
.+.++.+|-|-|+.+ .+...+|.-.|+.| |.+..|.|.+..-|+.|-
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Q ss_pred --------------------------------------EEEEEeCCHHHHHHHHHHcCCceec--CcceEEEE
Q 012896 348 --------------------------------------SGFVAFSTPEEASRALLEMNGKMVV--SKPLYVAL 380 (454)
Q Consensus 348 --------------------------------------~afv~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~ 380 (454)
||.|+|.+.+.+.......+|..+. +..+-+.|
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
No 249
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=31.75 E-value=2.5e+02 Score=21.96 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCCcEEEEcCCCCC---CCHHHHHHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 21 FGTTSLYVGDLEAN---VTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 21 ~~~~~l~V~nLp~~---~~e~~l~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
.+...|.|+..... .+-..+++.+..-| .++++..-.+ ...|.|.+.++-.+|.+.|....-++-.+.
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VA 104 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIA 104 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45567888877444 56678899998887 5666655432 579999999999999988765443333333
Q ss_pred e
Q 012896 97 V 97 (454)
Q Consensus 97 v 97 (454)
.
T Consensus 105 l 105 (127)
T PRK10629 105 Q 105 (127)
T ss_pred E
Confidence 3
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.92 E-value=74 Score=29.55 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=25.4
Q ss_pred EEEEeCChHHHHHHHHHHcCCCCCCceEEEecccccc
Q 012896 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (454)
Q Consensus 246 afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~ 282 (454)
|||+|.+..+|..+.+.+.... ...+.+..++.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 6999999999999998554443 3555676666543
No 251
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=30.62 E-value=73 Score=23.23 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=17.7
Q ss_pred cEEEEEeCCHHHHHHHHHHh
Q 012896 66 GYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 66 g~afV~f~~~~~A~~a~~~l 85 (454)
-|++++|.+.+.+..+..++
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 48999999999999998875
No 252
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.34 E-value=1.7e+02 Score=18.93 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=39.1
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCH----HHHHHHHHH
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP----EEASRALLE 365 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~----~~A~~a~~~ 365 (454)
++.|.|+.-.-....+...+...-.|.++.+... .+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4678888887788889999988888888888665 44688888754 344444443
No 253
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.03 E-value=65 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.1
Q ss_pred EEEEEeCCHHHHHHHHHHcCCc
Q 012896 348 SGFVAFSTPEEASRALLEMNGK 369 (454)
Q Consensus 348 ~afv~f~~~~~A~~a~~~l~g~ 369 (454)
+.+|.|.+..+|.+|-+.|...
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHC
Confidence 5799999999999999888654
No 254
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=24.71 E-value=1.2e+02 Score=28.18 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=23.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 68 afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
|||.|++.++|..|.+.+.... ++.+++..+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999654432 34556654443
No 255
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=23.79 E-value=2.6e+02 Score=28.16 Aligned_cols=80 Identities=9% Similarity=0.226 Sum_probs=57.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcCCCCccee--------------eecccCCC-----ccccCCCcceeeecCCcccChH
Q 012896 66 GYGYVNFSNAQEAARALEMLNFTPLNGKPIR--------------VMYSHRDP-----SLRKSGAGNIFIKNLDKAIDHK 126 (454)
Q Consensus 66 g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~--------------v~~~~~~~-----~~~~~~~~~l~v~nlp~~~~~~ 126 (454)
--||+.+.+.+..+-..+.|+...+.+..|+ +.|++.+. ..+......+|+.+|+.+..++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 3699999999999999998887766543332 22333221 0111245679999999999888
Q ss_pred HHhhhhcccCceeEEEEee
Q 012896 127 ALHDTFSAFGNILSCKVAT 145 (454)
Q Consensus 127 ~l~~~f~~~g~v~~~~~~~ 145 (454)
-=.++....-.++.+.+.+
T Consensus 317 VQ~~~irsipGlEna~i~r 335 (621)
T COG0445 317 VQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHhCcccccceeec
Confidence 8888888887888888876
No 256
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.74 E-value=2.9e+02 Score=20.02 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=33.3
Q ss_pred HHHHHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 012896 38 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (454)
Q Consensus 38 ~~l~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 86 (454)
+.++++++.+| ++.++...... .-....+++.|.+.|.++.-.+.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHHH
Confidence 45777888885 88888887654 33478899999998888776543
No 257
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=22.28 E-value=3.1e+02 Score=19.84 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=36.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCc
Q 012896 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA--QEAARALEMLNFT 88 (454)
Q Consensus 26 l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~~~ 88 (454)
++.-.+|..- -.|++|++.+++-.+|..+.-..++...+.++|-|.-. ++.+..++.|+..
T Consensus 12 ~~~v~~PE~p--Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 12 LFAVEFPERP--GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEE--BST--THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEECCCCc--cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 3444454332 24888888888766677766556666778888776654 5556777777654
No 258
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.16 E-value=3.9e+02 Score=20.92 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=45.6
Q ss_pred CceEEEecCCCc---CCHHHHHhccccCC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 305 GANLYIKNLDDS---IDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 305 ~~~l~v~nl~~~---~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
...|.|...... .+-+.+.+.+..-| .++++..-.+ -..|.|.+.++-.+|.+.|....=++-.|.+..
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~-------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND-------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC-------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 345777766333 45677778887766 4555554332 588999999998888887765443344555554
Q ss_pred cc
Q 012896 381 AQ 382 (454)
Q Consensus 381 ~~ 382 (454)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 43
No 259
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.87 E-value=2.5e+02 Score=19.25 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHhccccCC-CceEEEEeeCCCCCcceEEEEEeC-CHHHHHHHHHHcCC
Q 012896 319 DEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFS-TPEEASRALLEMNG 368 (454)
Q Consensus 319 ~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~afv~f~-~~~~A~~a~~~l~g 368 (454)
--++...|..+| .+.++.-.+.......-.-||+++ +.++..+|++.|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 466778888887 466665554444333445677777 44455667776654
No 260
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.09 E-value=96 Score=32.16 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=8.8
Q ss_pred EecCHHHHHHHHHHh
Q 012896 158 QFDNEESAQKAIEKL 172 (454)
Q Consensus 158 ~f~~~~~A~~a~~~l 172 (454)
.-.+..++.+|++.+
T Consensus 205 ~~k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556667777654
No 261
>PF14893 PNMA: PNMA
Probab=20.85 E-value=68 Score=29.86 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=40.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHh----cCCCeEEEE-EEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFN----QMGQVVSVR-VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~----~~G~v~~v~-~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
-+.|+|.+||.++++++|.+.+. +.|...=+. +++. ..+...|+|+|...-+-...=.. ..-.|...+|
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~---~~~~~aalve~~e~~n~~~iP~~---i~g~gg~W~V 91 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRR---EENAKAALVEFAEDVNYSLIPRE---IPGKGGPWRV 91 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhh---hcccceeeeecccccchhhCchh---cCCCCCceEE
Confidence 47899999999999999988765 455431111 1111 11223688888765433222221 2224566666
Q ss_pred eccc
Q 012896 98 MYSH 101 (454)
Q Consensus 98 ~~~~ 101 (454)
.+-.
T Consensus 92 v~~p 95 (331)
T PF14893_consen 92 VFKP 95 (331)
T ss_pred EecC
Confidence 5443
No 262
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.73 E-value=80 Score=18.40 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHhcCC
Q 012896 33 ANVTDSQLYDLFNQMG 48 (454)
Q Consensus 33 ~~~~e~~l~~~f~~~G 48 (454)
.+++++.|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998764
No 263
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.43 E-value=1.7e+02 Score=20.85 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=24.9
Q ss_pred CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCce
Q 012896 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370 (454)
Q Consensus 331 ~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~ 370 (454)
.|.++-.+.+ .+||-||+=.+..+...|+..+.+..
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4556555444 68999999999999999998877644
No 264
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.30 E-value=52 Score=30.95 Aligned_cols=58 Identities=28% Similarity=0.289 Sum_probs=45.7
Q ss_pred eEEEecCCCcCC--------HHHHHhcccc--CCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHH
Q 012896 307 NLYIKNLDDSID--------DEKLKQLFSP--FGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364 (454)
Q Consensus 307 ~l~v~nl~~~~~--------~~~l~~~f~~--~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~ 364 (454)
.+|+.+.+..-+ .+++...|.+ .+.+..++..++. +...+|..|++|...+.|++.+.
T Consensus 176 ~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 176 DVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 466666665433 3599999998 6788888888876 67778889999999999999874
Done!