Query 012896
Match_columns 454
No_of_seqs 296 out of 3108
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1E-44 3.4E-49 331.4 31.8 257 21-398 20-278 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.4E-44 8.3E-49 330.2 24.4 254 16-384 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 5.4E-34 1.8E-38 248.1 18.2 180 13-193 5-184 (213)
4 4f02_A Polyadenylate-binding p 100.0 1.2E-32 4.2E-37 239.4 21.7 174 200-390 13-187 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 2.1E-31 7.3E-36 223.0 19.3 164 24-188 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.9E-31 2.4E-35 220.3 19.7 163 22-186 2-167 (168)
7 3md3_A Nuclear and cytoplasmic 100.0 6.1E-31 2.1E-35 220.2 19.2 165 203-383 1-166 (166)
8 1fxl_A Paraneoplastic encephal 100.0 1.8E-30 6E-35 217.7 20.5 163 22-186 1-166 (167)
9 2qfj_A FBP-interacting repress 100.0 3.9E-30 1.3E-34 225.1 22.8 177 200-383 26-204 (216)
10 1l3k_A Heterogeneous nuclear r 100.0 1.6E-30 5.5E-35 223.9 19.4 177 15-193 5-186 (196)
11 2qfj_A FBP-interacting repress 100.0 2.5E-30 8.5E-35 226.3 19.7 173 20-192 25-207 (216)
12 3nmr_A Cugbp ELAV-like family 100.0 6E-30 2.1E-34 216.1 20.1 165 22-187 2-174 (175)
13 1fxl_A Paraneoplastic encephal 100.0 1E-29 3.6E-34 212.9 21.0 162 202-381 2-167 (167)
14 1b7f_A Protein (SXL-lethal pro 100.0 4.4E-30 1.5E-34 215.4 18.5 163 201-381 2-168 (168)
15 1l3k_A Heterogeneous nuclear r 100.0 8.7E-30 3E-34 219.3 20.5 177 199-389 10-188 (196)
16 3nmr_A Cugbp ELAV-like family 100.0 1.6E-29 5.3E-34 213.6 19.9 164 202-382 3-175 (175)
17 2cjk_A Nuclear polyadenylated 100.0 1E-29 3.5E-34 212.9 15.4 163 201-384 2-166 (167)
18 2cjk_A Nuclear polyadenylated 100.0 3.1E-30 1.1E-34 216.1 12.2 165 21-190 1-166 (167)
19 1fje_B Nucleolin RBD12, protei 100.0 5.3E-30 1.8E-34 216.3 11.0 168 17-190 7-174 (175)
20 2g4b_A Splicing factor U2AF 65 100.0 1.5E-28 5.1E-33 206.9 18.2 158 21-187 2-171 (172)
21 3smz_A Protein raver-1, ribonu 100.0 2.9E-28 1E-32 222.3 20.7 173 21-193 93-267 (284)
22 3tyt_A Heterogeneous nuclear r 100.0 1.4E-28 4.7E-33 211.2 16.2 155 21-181 2-194 (205)
23 2yh0_A Splicing factor U2AF 65 100.0 3.3E-28 1.1E-32 209.7 17.7 163 22-191 3-195 (198)
24 3pgw_A U1-A; protein-RNA compl 100.0 5.1E-28 1.7E-32 220.4 19.8 165 17-188 3-281 (282)
25 2g4b_A Splicing factor U2AF 65 100.0 1.9E-28 6.4E-33 206.3 15.2 158 201-382 3-172 (172)
26 2adc_A Polypyrimidine tract-bi 100.0 4.2E-28 1.4E-32 213.3 18.0 172 9-189 20-227 (229)
27 1fje_B Nucleolin RBD12, protei 100.0 4.4E-29 1.5E-33 210.7 9.3 165 199-384 10-174 (175)
28 3tyt_A Heterogeneous nuclear r 100.0 1.5E-28 5E-33 211.0 12.5 176 201-381 3-204 (205)
29 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-27 4.5E-32 217.7 19.1 178 199-382 6-281 (282)
30 3sde_A Paraspeckle component 1 100.0 2.9E-27 1E-31 212.1 18.9 161 17-191 16-180 (261)
31 2ghp_A U4/U6 snRNA-associated 100.0 1E-27 3.6E-32 219.5 15.6 168 21-190 115-291 (292)
32 2adc_A Polypyrimidine tract-bi 99.9 1.2E-27 4.1E-32 210.4 13.7 178 199-384 31-228 (229)
33 2yh0_A Splicing factor U2AF 65 99.9 3.4E-27 1.2E-31 203.4 15.7 178 202-385 4-195 (198)
34 3sde_A Paraspeckle component 1 99.9 1E-26 3.5E-31 208.6 18.7 158 199-385 19-180 (261)
35 1qm9_A Polypyrimidine tract-bi 99.9 2.8E-27 9.6E-32 203.7 14.3 159 22-189 2-196 (198)
36 1qm9_A Polypyrimidine tract-bi 99.9 1.4E-26 4.7E-31 199.4 13.7 175 202-384 3-197 (198)
37 4fxv_A ELAV-like protein 1; RN 99.9 2.5E-21 8.6E-26 145.1 10.5 82 302-383 16-98 (99)
38 4f25_A Polyadenylate-binding p 99.8 2.2E-21 7.6E-26 150.2 9.5 105 21-127 3-113 (115)
39 2kn4_A Immunoglobulin G-bindin 99.8 1E-21 3.5E-26 162.0 7.9 147 233-385 4-151 (158)
40 3s8s_A Histone-lysine N-methyl 99.8 2.2E-20 7.5E-25 142.7 13.5 90 303-392 4-94 (110)
41 4fxv_A ELAV-like protein 1; RN 99.8 1.9E-20 6.6E-25 140.3 10.4 82 21-102 17-98 (99)
42 2i2y_A Fusion protein consists 99.8 1.3E-20 4.6E-25 153.7 8.4 138 240-384 10-148 (150)
43 3s8s_A Histone-lysine N-methyl 99.8 1.6E-19 5.3E-24 138.0 10.8 85 19-103 2-86 (110)
44 1x5s_A Cold-inducible RNA-bind 99.8 2.9E-19 9.8E-24 135.6 11.8 95 12-106 1-95 (102)
45 2e5h_A Zinc finger CCHC-type a 99.8 2E-19 6.7E-24 134.3 10.6 92 10-101 3-94 (94)
46 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-19 8.8E-24 147.6 12.3 139 52-192 2-152 (158)
47 2lkz_A RNA-binding protein 5; 99.8 6.6E-20 2.3E-24 135.5 7.4 80 304-383 8-94 (95)
48 2lxi_A RNA-binding protein 10; 99.8 2.8E-20 9.5E-25 137.3 5.4 81 305-385 1-84 (91)
49 4f25_A Polyadenylate-binding p 99.8 1.4E-19 4.8E-24 140.0 8.8 83 305-388 5-87 (115)
50 2lkz_A RNA-binding protein 5; 99.8 1E-19 3.6E-24 134.5 7.3 86 17-102 3-94 (95)
51 1x5u_A Splicing factor 3B subu 99.8 1.2E-18 4.3E-23 132.8 12.8 95 12-106 4-98 (105)
52 3md1_A Nuclear and cytoplasmic 99.8 5.7E-19 1.9E-23 128.4 10.4 80 306-385 2-82 (83)
53 2lxi_A RNA-binding protein 10; 99.8 6.5E-20 2.2E-24 135.3 5.3 83 23-105 1-85 (91)
54 2dnm_A SRP46 splicing factor; 99.8 9.5E-19 3.2E-23 132.9 11.9 93 13-105 3-95 (103)
55 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.6E-19 1.9E-23 129.7 10.2 81 304-384 5-86 (87)
56 2cqc_A Arginine/serine-rich sp 99.8 7.6E-19 2.6E-23 131.4 11.1 91 12-102 4-94 (95)
57 2kxn_B Transformer-2 protein h 99.8 7.9E-19 2.7E-23 138.4 11.6 91 14-104 37-127 (129)
58 2dgs_A DAZ-associated protein 99.8 1.9E-18 6.4E-23 130.2 13.1 90 16-106 3-92 (99)
59 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4E-19 1.4E-23 134.7 9.4 94 13-106 2-95 (102)
60 2cq0_A Eukaryotic translation 99.8 1.1E-18 3.7E-23 132.6 11.7 93 13-105 5-97 (103)
61 2i2y_A Fusion protein consists 99.8 5.8E-19 2E-23 143.9 10.6 125 61-190 9-148 (150)
62 2dgo_A Cytotoxic granule-assoc 99.8 2.3E-18 7.8E-23 133.6 13.0 96 11-106 3-98 (115)
63 2do4_A Squamous cell carcinoma 99.8 5.8E-19 2E-23 133.3 9.3 83 303-385 15-97 (100)
64 2do0_A HnRNP M, heterogeneous 99.8 1.7E-18 5.9E-23 134.2 12.1 82 303-384 13-94 (114)
65 2ywk_A Putative RNA-binding pr 99.8 7.8E-19 2.7E-23 131.3 9.8 91 11-102 4-94 (95)
66 1whw_A Hypothetical protein ri 99.8 1.8E-18 6.3E-23 130.3 11.8 88 19-106 4-91 (99)
67 2cph_A RNA binding motif prote 99.8 2.7E-18 9.2E-23 131.4 12.9 95 12-106 4-100 (107)
68 2x1f_A MRNA 3'-END-processing 99.8 9.6E-19 3.3E-23 130.9 10.1 84 304-387 1-85 (96)
69 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.7E-19 3E-23 128.7 9.7 84 20-103 3-86 (87)
70 3r27_A HnRNP L, heterogeneous 99.8 4.5E-19 1.5E-23 130.6 7.8 82 299-385 15-98 (100)
71 3p5t_L Cleavage and polyadenyl 99.8 2.3E-19 7.9E-24 132.4 6.3 80 306-385 2-84 (90)
72 2wbr_A GW182, gawky, LD47780P; 99.8 6.1E-19 2.1E-23 124.6 8.1 76 304-384 6-81 (89)
73 2do4_A Squamous cell carcinoma 99.8 2.9E-18 9.8E-23 129.4 12.4 90 14-104 8-97 (100)
74 2d9p_A Polyadenylate-binding p 99.8 3.6E-18 1.2E-22 129.7 13.0 92 12-105 4-95 (103)
75 3ns6_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 134.0 7.3 82 305-386 6-95 (100)
76 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.2E-19 2.4E-23 128.5 8.7 80 303-382 5-85 (85)
77 2dnz_A Probable RNA-binding pr 99.8 4.1E-18 1.4E-22 127.3 12.9 86 20-105 2-87 (95)
78 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.5E-19 2.6E-23 145.5 9.4 141 248-388 11-156 (165)
79 2lea_A Serine/arginine-rich sp 99.8 2.3E-19 7.8E-24 142.8 6.0 122 245-385 6-128 (135)
80 2dnz_A Probable RNA-binding pr 99.8 1.6E-18 5.5E-23 129.5 10.3 83 303-385 3-86 (95)
81 2dh8_A DAZ-associated protein 99.8 2.3E-18 7.8E-23 131.3 11.3 94 11-105 4-97 (105)
82 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-18 4.6E-23 127.0 9.5 83 19-101 3-85 (85)
83 2d9p_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 132.5 9.3 83 302-385 12-94 (103)
84 1s79_A Lupus LA protein; RRM, 99.8 1.1E-18 3.8E-23 131.4 9.1 81 304-385 10-90 (103)
85 2cq0_A Eukaryotic translation 99.8 2E-18 6.9E-23 131.0 10.7 84 302-385 12-96 (103)
86 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.7E-23 131.5 9.0 84 303-386 6-90 (99)
87 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-18 4.3E-23 132.8 9.3 84 303-386 13-99 (105)
88 1p27_B RNA-binding protein 8A; 99.8 2.6E-18 9E-23 131.2 11.2 91 13-103 13-103 (106)
89 2ywk_A Putative RNA-binding pr 99.8 1.3E-18 4.3E-23 130.1 9.2 81 303-383 14-94 (95)
90 1sjq_A Polypyrimidine tract-bi 99.8 2.1E-18 7E-23 128.5 10.1 83 18-106 11-95 (105)
91 1x4h_A RNA-binding protein 28; 99.8 5.2E-18 1.8E-22 130.8 12.7 92 14-105 6-103 (111)
92 1sjq_A Polypyrimidine tract-bi 99.8 4E-19 1.4E-23 132.3 6.0 79 302-385 13-93 (105)
93 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-18 6.5E-23 128.9 9.8 80 303-382 14-94 (94)
94 2fy1_A RNA-binding motif prote 99.8 2E-18 7E-23 133.5 10.2 83 303-385 5-87 (116)
95 2khc_A Testis-specific RNP-typ 99.8 2.3E-18 7.9E-23 134.3 10.4 86 16-101 33-118 (118)
96 2dgo_A Cytotoxic granule-assoc 99.8 5.1E-18 1.7E-22 131.7 12.3 84 302-385 12-96 (115)
97 2cpz_A CUG triplet repeat RNA- 99.8 4.2E-18 1.4E-22 132.1 11.7 89 17-105 19-107 (115)
98 3md1_A Nuclear and cytoplasmic 99.8 3.1E-18 1.1E-22 124.5 10.4 81 23-103 1-81 (83)
99 2cq3_A RNA-binding protein 9; 99.8 7.7E-18 2.6E-22 127.8 13.0 94 11-106 3-96 (103)
100 3lqv_A PRE-mRNA branch site pr 99.8 1.5E-18 5.1E-23 134.7 9.1 106 19-137 4-109 (115)
101 3n9u_C Cleavage and polyadenyl 99.8 3.8E-18 1.3E-22 138.9 11.8 85 304-388 54-141 (156)
102 2jrs_A RNA-binding protein 39; 99.8 4.9E-18 1.7E-22 129.5 11.8 88 16-103 19-106 (108)
103 2div_A TRNA selenocysteine ass 99.8 3.1E-18 1.1E-22 129.0 10.4 87 17-103 3-94 (99)
104 1x5t_A Splicing factor 3B subu 99.8 1E-18 3.5E-23 130.9 7.7 82 304-385 4-87 (96)
105 2x1f_A MRNA 3'-END-processing 99.8 2.5E-18 8.7E-23 128.6 9.9 84 22-105 1-84 (96)
106 2cqd_A RNA-binding region cont 99.8 4.7E-18 1.6E-22 132.0 11.7 93 11-104 5-97 (116)
107 2dgp_A Bruno-like 4, RNA bindi 99.8 4.9E-18 1.7E-22 129.7 11.6 92 14-105 4-98 (106)
108 2la6_A RNA-binding protein FUS 99.8 4.7E-18 1.6E-22 127.9 11.1 86 16-101 6-99 (99)
109 2dng_A Eukaryotic translation 99.8 7E-18 2.4E-22 128.0 12.2 92 12-105 4-95 (103)
110 2cqc_A Arginine/serine-rich sp 99.8 2.4E-18 8.2E-23 128.7 9.3 81 303-383 13-94 (95)
111 2la6_A RNA-binding protein FUS 99.8 3.6E-18 1.2E-22 128.6 10.4 81 302-382 10-99 (99)
112 2dgs_A DAZ-associated protein 99.8 2.9E-18 9.9E-23 129.1 9.8 82 303-385 8-90 (99)
113 1p27_B RNA-binding protein 8A; 99.8 2.1E-18 7.1E-23 131.8 9.0 83 303-385 21-104 (106)
114 2cpz_A CUG triplet repeat RNA- 99.8 2.4E-18 8.2E-23 133.4 9.5 83 303-385 23-106 (115)
115 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.2E-18 2.8E-22 127.6 12.2 92 12-105 4-95 (103)
116 1p1t_A Cleavage stimulation fa 99.8 3.6E-18 1.2E-22 130.0 10.0 85 305-389 8-93 (104)
117 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-17 5.5E-22 126.6 13.6 86 19-105 11-99 (105)
118 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.9E-18 6.4E-23 131.0 8.2 83 303-385 10-93 (102)
119 2dhg_A TRNA selenocysteine ass 99.8 9.9E-18 3.4E-22 127.5 12.3 88 17-105 3-92 (104)
120 2jrs_A RNA-binding protein 39; 99.8 2.7E-18 9.2E-23 131.0 9.1 83 302-384 23-106 (108)
121 3p5t_L Cleavage and polyadenyl 99.8 1.4E-18 4.7E-23 128.2 7.2 82 24-105 2-85 (90)
122 1wex_A Hypothetical protein (r 99.8 9E-18 3.1E-22 126.3 11.7 88 12-105 4-93 (104)
123 1u6f_A Tcubp1, RNA-binding pro 99.8 9.2E-18 3.2E-22 135.0 12.5 91 15-105 34-124 (139)
124 2do0_A HnRNP M, heterogeneous 99.8 1.3E-17 4.6E-22 129.1 13.0 90 13-103 5-94 (114)
125 3ulh_A THO complex subunit 4; 99.8 4.7E-18 1.6E-22 130.0 10.3 81 302-382 26-106 (107)
126 3ns6_A Eukaryotic translation 99.8 1.7E-18 5.9E-23 130.2 7.7 84 19-102 2-92 (100)
127 1oo0_B CG8781-PA, drosophila Y 99.8 2.2E-18 7.6E-23 132.5 8.4 83 303-385 24-107 (110)
128 1x5u_A Splicing factor 3B subu 99.7 2.9E-18 9.9E-23 130.7 8.9 83 303-385 13-96 (105)
129 1x5s_A Cold-inducible RNA-bind 99.7 2.6E-18 8.9E-23 130.2 8.4 83 303-385 10-93 (102)
130 1wi8_A EIF-4B, eukaryotic tran 99.7 8.2E-18 2.8E-22 127.9 11.1 92 13-106 5-97 (104)
131 1x5t_A Splicing factor 3B subu 99.7 3.6E-18 1.2E-22 127.9 9.0 85 21-105 3-88 (96)
132 2cq3_A RNA-binding protein 9; 99.7 7.2E-18 2.5E-22 128.0 10.7 83 302-385 12-94 (103)
133 1x4d_A Matrin 3; structural ge 99.7 1.6E-18 5.4E-23 129.3 6.8 76 304-384 14-92 (102)
134 1s79_A Lupus LA protein; RRM, 99.7 5.2E-18 1.8E-22 127.7 9.7 82 19-102 7-88 (103)
135 2cpf_A RNA binding motif prote 99.7 6.2E-18 2.1E-22 127.1 10.1 85 21-105 3-90 (98)
136 2dgx_A KIAA0430 protein; RRM d 99.7 3.4E-18 1.2E-22 127.7 8.6 81 303-385 7-91 (96)
137 3s7r_A Heterogeneous nuclear r 99.7 6.3E-18 2.2E-22 124.0 9.9 84 16-100 4-87 (87)
138 1wez_A HnRNP H', FTP-3, hetero 99.7 7.4E-18 2.5E-22 126.9 10.4 88 14-104 6-93 (102)
139 2cpe_A RNA-binding protein EWS 99.7 9.2E-18 3.1E-22 129.7 11.1 90 16-105 8-105 (113)
140 2hgl_A HNRPF protein, heteroge 99.7 2.5E-18 8.4E-23 135.9 7.9 86 15-102 36-124 (136)
141 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-17 6E-22 123.1 12.2 86 18-105 3-88 (92)
142 2dnm_A SRP46 splicing factor; 99.7 2.6E-18 9E-23 130.4 7.8 83 303-385 11-94 (103)
143 3ulh_A THO complex subunit 4; 99.7 7.5E-18 2.6E-22 128.9 10.4 86 15-101 21-106 (107)
144 2cpf_A RNA binding motif prote 99.7 4E-18 1.4E-22 128.1 8.6 83 303-385 3-89 (98)
145 2cq1_A PTB-like protein L; RRM 99.7 6.5E-18 2.2E-22 126.2 9.6 78 303-385 13-92 (101)
146 2fy1_A RNA-binding motif prote 99.7 1.3E-17 4.4E-22 129.0 11.6 85 19-104 3-87 (116)
147 2div_A TRNA selenocysteine ass 99.7 4.5E-18 1.6E-22 128.1 8.9 82 303-384 7-94 (99)
148 2cph_A RNA binding motif prote 99.7 4.7E-18 1.6E-22 130.1 9.0 84 302-385 12-98 (107)
149 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.5E-18 2.2E-22 136.2 10.3 94 7-100 47-140 (140)
150 2db1_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 132.1 8.9 82 303-385 15-99 (118)
151 2ad9_A Polypyrimidine tract-bi 99.7 3.9E-18 1.3E-22 130.4 8.4 79 302-385 28-108 (119)
152 2ek1_A RNA-binding protein 12; 99.7 1.8E-18 6.3E-23 129.2 6.5 86 17-102 9-94 (95)
153 2dgv_A HnRNP M, heterogeneous 99.7 4.7E-18 1.6E-22 126.2 8.7 82 303-385 6-87 (92)
154 1oo0_B CG8781-PA, drosophila Y 99.7 6.3E-18 2.2E-22 130.0 9.7 91 14-104 17-107 (110)
155 4a8x_A RNA-binding protein wit 99.7 2.2E-18 7.4E-23 126.9 6.7 82 304-385 3-86 (88)
156 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.5E-18 2.2E-22 128.2 9.4 82 303-385 13-94 (103)
157 2dhg_A TRNA selenocysteine ass 99.7 2.2E-18 7.7E-23 131.1 6.8 83 303-385 7-91 (104)
158 3ucg_A Polyadenylate-binding p 99.7 7.3E-18 2.5E-22 124.3 9.4 79 305-384 6-85 (89)
159 2cpy_A RNA-binding protein 12; 99.7 5.1E-18 1.7E-22 131.1 8.8 86 303-389 13-99 (114)
160 1x4e_A RNA binding motif, sing 99.7 4.2E-18 1.4E-22 124.3 7.9 82 20-101 2-83 (85)
161 2cqp_A RNA-binding protein 12; 99.7 4.5E-18 1.5E-22 127.9 8.3 88 16-103 8-95 (98)
162 2khc_A Testis-specific RNP-typ 99.7 4.1E-18 1.4E-22 132.8 8.3 81 302-382 37-118 (118)
163 2kxn_B Transformer-2 protein h 99.7 2.1E-18 7.3E-23 135.9 6.7 83 303-385 44-127 (129)
164 1p1t_A Cleavage stimulation fa 99.7 3.8E-18 1.3E-22 129.9 7.9 88 17-104 2-89 (104)
165 2cq1_A PTB-like protein L; RRM 99.7 2E-17 6.7E-22 123.6 11.5 86 15-106 7-94 (101)
166 2m2b_A RNA-binding protein 10; 99.7 5.7E-18 2E-22 134.3 8.9 91 13-104 13-109 (131)
167 2cpi_A CCR4-NOT transcription 99.7 6.7E-18 2.3E-22 129.7 9.0 83 303-385 13-102 (111)
168 2hvz_A Splicing factor, argini 99.7 6.7E-18 2.3E-22 127.6 8.9 92 24-120 1-100 (101)
169 2err_A Ataxin-2-binding protei 99.7 6.2E-18 2.1E-22 129.4 8.7 83 301-384 25-107 (109)
170 3ucg_A Polyadenylate-binding p 99.7 3.6E-18 1.2E-22 126.0 7.2 82 21-103 4-85 (89)
171 1wg5_A Heterogeneous nuclear r 99.7 2.2E-17 7.6E-22 125.2 11.7 88 15-104 7-95 (104)
172 2dgw_A Probable RNA-binding pr 99.7 1.3E-17 4.4E-22 123.4 10.1 81 303-385 8-88 (91)
173 2hgl_A HNRPF protein, heteroge 99.7 6.7E-18 2.3E-22 133.4 9.0 82 304-386 43-127 (136)
174 3s7r_A Heterogeneous nuclear r 99.7 1.3E-17 4.4E-22 122.3 9.9 79 302-381 8-87 (87)
175 2lea_A Serine/arginine-rich sp 99.7 4.4E-18 1.5E-22 135.3 7.9 91 15-105 39-129 (135)
176 2dng_A Eukaryotic translation 99.7 1.2E-17 4.3E-22 126.6 10.0 81 303-385 13-94 (103)
177 2cqp_A RNA-binding protein 12; 99.7 6.3E-18 2.2E-22 127.0 8.3 82 303-384 13-95 (98)
178 2dgp_A Bruno-like 4, RNA bindi 99.7 5.2E-18 1.8E-22 129.5 7.9 83 303-385 11-97 (106)
179 2ek1_A RNA-binding protein 12; 99.7 5.3E-18 1.8E-22 126.7 7.8 81 303-383 13-94 (95)
180 1x4h_A RNA-binding protein 28; 99.7 7E-18 2.4E-22 130.1 8.7 83 303-385 13-102 (111)
181 2ad9_A Polypyrimidine tract-bi 99.7 2.3E-17 8E-22 126.1 11.3 86 15-106 23-110 (119)
182 2wbr_A GW182, gawky, LD47780P; 99.7 9.9E-18 3.4E-22 118.4 8.5 75 21-101 5-79 (89)
183 2mss_A Protein (musashi1); RNA 99.7 4.6E-18 1.6E-22 120.9 6.9 74 307-381 1-75 (75)
184 2cqg_A TDP-43, TAR DNA-binding 99.7 4E-17 1.4E-21 123.8 12.4 91 13-105 5-95 (103)
185 2cqd_A RNA-binding region cont 99.7 1.8E-17 6E-22 128.8 10.7 82 302-384 14-96 (116)
186 1wex_A Hypothetical protein (r 99.7 6.5E-18 2.2E-22 127.1 7.8 78 303-385 13-92 (104)
187 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3E-18 1E-22 129.1 6.0 81 303-385 17-99 (100)
188 3r27_A HnRNP L, heterogeneous 99.7 1.3E-17 4.6E-22 122.7 9.3 82 16-103 14-97 (100)
189 1wez_A HnRNP H', FTP-3, hetero 99.7 9.1E-18 3.1E-22 126.4 8.6 81 303-385 13-93 (102)
190 1x4e_A RNA binding motif, sing 99.7 2.6E-18 8.8E-23 125.5 5.2 80 303-382 3-83 (85)
191 2a3j_A U1 small nuclear ribonu 99.7 9.4E-18 3.2E-22 130.9 8.8 85 302-388 26-114 (127)
192 2cq4_A RNA binding motif prote 99.7 8.1E-18 2.8E-22 130.2 8.3 81 305-386 25-106 (114)
193 2kt5_A RNA and export factor-b 99.7 1.5E-17 5.1E-22 130.8 9.9 82 303-384 33-114 (124)
194 1x5o_A RNA binding motif, sing 99.7 1.9E-17 6.5E-22 128.2 10.4 81 304-384 24-112 (114)
195 1wi8_A EIF-4B, eukaryotic tran 99.7 1.1E-17 3.6E-22 127.2 8.7 81 303-385 13-95 (104)
196 1x4a_A Splicing factor, argini 99.7 5.9E-17 2E-21 124.3 12.9 89 14-105 13-101 (109)
197 2cpe_A RNA-binding protein EWS 99.7 1E-17 3.5E-22 129.5 8.7 83 303-385 13-104 (113)
198 2kt5_A RNA and export factor-b 99.7 4.4E-17 1.5E-21 128.1 12.5 89 15-104 27-115 (124)
199 2ki2_A SS-DNA binding protein 99.7 4.1E-18 1.4E-22 125.9 6.2 79 306-385 2-81 (90)
200 2dnn_A RNA-binding protein 12; 99.7 2.4E-17 8.1E-22 125.0 10.4 78 306-385 17-94 (109)
201 3ex7_B RNA-binding protein 8A; 99.7 1.9E-17 6.6E-22 130.6 10.4 91 14-104 13-103 (126)
202 1x4c_A Splicing factor, argini 99.7 3.9E-17 1.3E-21 124.8 11.6 86 13-105 5-95 (108)
203 4a8x_A RNA-binding protein wit 99.7 1.4E-17 4.9E-22 122.5 8.6 83 21-103 2-85 (88)
204 1x4f_A Matrin 3; structural ge 99.7 6.7E-18 2.3E-22 127.6 7.0 78 303-385 23-103 (112)
205 2dha_A FLJ20171 protein; RRM d 99.7 1.3E-17 4.3E-22 129.3 8.7 86 302-388 20-109 (123)
206 2dgx_A KIAA0430 protein; RRM d 99.7 2.3E-17 7.8E-22 123.2 9.8 84 18-104 4-91 (96)
207 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.2E-18 2.8E-22 120.3 6.7 75 306-381 1-76 (77)
208 1why_A Hypothetical protein ri 99.7 6E-17 2E-21 121.3 11.7 84 15-104 9-94 (97)
209 2mss_A Protein (musashi1); RNA 99.7 1E-17 3.5E-22 119.0 7.1 75 25-100 1-75 (75)
210 2dgw_A Probable RNA-binding pr 99.7 3.3E-17 1.1E-21 121.2 10.1 85 17-104 4-88 (91)
211 2lmi_A GRSF-1, G-rich sequence 99.7 4.9E-18 1.7E-22 129.6 5.7 83 303-386 9-94 (107)
212 3ex7_B RNA-binding protein 8A; 99.7 1.6E-17 5.6E-22 131.0 8.9 83 303-385 20-103 (126)
213 3n9u_C Cleavage and polyadenyl 99.7 1.9E-17 6.7E-22 134.7 9.6 82 21-102 53-136 (156)
214 3q2s_C Cleavage and polyadenyl 99.7 9.4E-18 3.2E-22 146.0 8.2 84 304-387 67-153 (229)
215 1wg5_A Heterogeneous nuclear r 99.7 1.6E-17 5.3E-22 126.0 8.4 82 303-385 13-95 (104)
216 2ytc_A PRE-mRNA-splicing facto 99.7 3.5E-17 1.2E-21 119.4 10.0 83 13-101 2-85 (85)
217 1x4d_A Matrin 3; structural ge 99.7 2.1E-17 7.2E-22 123.2 8.7 83 16-104 8-93 (102)
218 1u6f_A Tcubp1, RNA-binding pro 99.7 1.1E-17 3.6E-22 134.6 7.6 83 303-385 40-123 (139)
219 2krb_A Eukaryotic translation 99.7 5.7E-18 1.9E-22 122.2 5.4 72 306-378 2-80 (81)
220 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-17 3.8E-22 119.6 6.8 76 24-100 1-76 (77)
221 2cpi_A CCR4-NOT transcription 99.7 3.2E-17 1.1E-21 125.9 9.8 93 12-104 4-102 (111)
222 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-17 5.3E-22 127.1 7.9 82 303-385 23-105 (109)
223 2dnq_A RNA-binding protein 4B; 99.7 1.2E-16 4.1E-21 117.8 12.4 81 18-106 3-83 (90)
224 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.6E-17 5.4E-22 125.1 7.8 85 17-103 13-98 (100)
225 2cpy_A RNA-binding protein 12; 99.7 1.4E-17 4.9E-22 128.6 7.6 88 14-103 6-94 (114)
226 2fc9_A NCL protein; structure 99.7 2.5E-17 8.7E-22 124.4 8.9 80 303-385 13-92 (101)
227 2nlw_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 126.9 6.9 80 304-384 14-100 (105)
228 1x4f_A Matrin 3; structural ge 99.7 3.3E-17 1.1E-21 123.8 9.2 82 17-104 19-103 (112)
229 2rs2_A Musashi-1, RNA-binding 99.7 2.8E-17 9.6E-22 125.6 9.0 87 17-104 19-105 (109)
230 1wel_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 128.3 9.8 83 304-387 24-107 (124)
231 2dis_A Unnamed protein product 99.7 6.3E-17 2.1E-21 124.2 10.8 86 20-105 5-94 (109)
232 1why_A Hypothetical protein ri 99.7 3E-17 1E-21 123.0 8.8 78 303-385 15-94 (97)
233 2cpj_A Non-POU domain-containi 99.7 2.8E-17 9.7E-22 123.6 8.7 78 303-385 13-90 (99)
234 1x4a_A Splicing factor, argini 99.7 3.4E-17 1.2E-21 125.6 9.2 81 303-385 20-100 (109)
235 2m2b_A RNA-binding protein 10; 99.7 5.7E-18 2E-22 134.4 4.9 82 303-385 21-109 (131)
236 2ytc_A PRE-mRNA-splicing facto 99.7 3.1E-17 1.1E-21 119.7 8.4 75 303-382 10-85 (85)
237 2cpj_A Non-POU domain-containi 99.7 1E-16 3.5E-21 120.5 11.5 86 14-105 6-91 (99)
238 2fc9_A NCL protein; structure 99.7 6E-17 2.1E-21 122.4 10.2 89 13-105 5-93 (101)
239 2jvr_A Nucleolar protein 3; RN 99.7 2.3E-17 7.9E-22 125.3 7.8 78 304-384 27-105 (111)
240 2a3j_A U1 small nuclear ribonu 99.7 7.4E-17 2.5E-21 125.9 10.8 85 17-104 23-111 (127)
241 1nu4_A U1A RNA binding domain; 99.7 9.5E-18 3.2E-22 125.9 5.6 85 302-388 5-93 (97)
242 2hgm_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 127.1 8.7 87 13-102 32-120 (126)
243 2dh8_A DAZ-associated protein 99.7 1E-17 3.5E-22 127.6 5.7 83 302-385 13-96 (105)
244 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.4E-17 1.5E-21 133.7 10.0 83 303-385 37-120 (156)
245 2cq4_A RNA binding motif prote 99.7 2E-17 7E-22 127.9 7.5 83 20-103 22-104 (114)
246 2jwn_A Embryonic polyadenylate 99.7 3.2E-17 1.1E-21 129.0 8.7 79 305-384 36-115 (124)
247 2jvo_A Nucleolar protein 3; nu 99.7 3.4E-17 1.2E-21 124.8 8.4 80 300-386 26-105 (108)
248 2dnq_A RNA-binding protein 4B; 99.7 4.8E-17 1.7E-21 120.0 8.9 76 303-385 6-81 (90)
249 1h2v_Z 20 kDa nuclear CAP bind 99.7 9E-17 3.1E-21 131.8 11.4 88 18-105 34-121 (156)
250 2dis_A Unnamed protein product 99.7 2.9E-17 9.8E-22 126.1 7.9 83 303-385 6-93 (109)
251 2ki2_A SS-DNA binding protein 99.7 1.2E-17 4.1E-22 123.3 5.5 80 24-104 2-81 (90)
252 1x5o_A RNA binding motif, sing 99.7 1.9E-16 6.5E-21 122.5 12.4 85 17-102 19-111 (114)
253 2err_A Ataxin-2-binding protei 99.7 4.6E-17 1.6E-21 124.5 8.8 90 12-103 18-107 (109)
254 2la4_A Nuclear and cytoplasmic 99.7 3.7E-17 1.3E-21 123.6 8.1 77 303-384 25-101 (101)
255 2db1_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 127.0 8.0 83 18-102 12-97 (118)
256 1x4b_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 126.7 8.4 80 305-385 27-107 (116)
257 2krb_A Eukaryotic translation 99.7 4E-17 1.4E-21 117.7 7.7 73 23-97 1-80 (81)
258 2cqg_A TDP-43, TAR DNA-binding 99.7 7.7E-17 2.6E-21 122.2 9.5 81 303-385 13-94 (103)
259 2kvi_A Nuclear polyadenylated 99.7 4.9E-17 1.7E-21 121.4 8.2 78 302-386 7-85 (96)
260 2xnq_A Nuclear polyadenylated 99.7 7.9E-17 2.7E-21 120.3 9.3 77 301-384 18-95 (97)
261 1whx_A Hypothetical protein ri 99.7 3.2E-17 1.1E-21 125.7 7.3 79 19-103 6-84 (111)
262 1x4c_A Splicing factor, argini 99.7 7.3E-17 2.5E-21 123.3 9.2 76 304-385 14-94 (108)
263 1whx_A Hypothetical protein ri 99.7 3.7E-17 1.3E-21 125.3 7.5 76 304-384 9-84 (111)
264 2jwn_A Embryonic polyadenylate 99.7 7.9E-17 2.7E-21 126.7 9.5 82 22-104 35-116 (124)
265 2diu_A KIAA0430 protein; struc 99.7 2.9E-16 9.9E-21 111.8 11.3 78 19-106 4-87 (96)
266 1x4g_A Nucleolysin TIAR; struc 99.7 7.1E-17 2.4E-21 123.7 8.9 80 301-385 21-100 (109)
267 3lqv_A PRE-mRNA branch site pr 99.7 8.4E-17 2.9E-21 124.7 9.4 81 303-385 6-86 (115)
268 2e5j_A Methenyltetrahydrofolat 99.7 2.3E-16 7.9E-21 118.1 11.3 81 18-103 14-94 (97)
269 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.3E-17 2.1E-21 130.4 8.8 79 303-381 61-140 (140)
270 2dnn_A RNA-binding protein 12; 99.7 6.2E-17 2.1E-21 122.7 8.2 83 17-102 10-92 (109)
271 2hgn_A Heterogeneous nuclear r 99.7 2.2E-17 7.4E-22 130.8 5.8 84 18-104 41-124 (139)
272 2fc8_A NCL protein; structure 99.7 2.2E-16 7.6E-21 119.5 11.2 91 12-105 4-94 (102)
273 2nlw_A Eukaryotic translation 99.7 1.2E-16 4.1E-21 121.4 9.6 83 19-103 11-100 (105)
274 2dgt_A RNA-binding protein 30; 99.7 1.9E-16 6.3E-21 117.3 10.3 83 15-105 2-84 (92)
275 2jvr_A Nucleolar protein 3; RN 99.7 4.1E-17 1.4E-21 123.9 6.9 83 19-105 24-107 (111)
276 1x4b_A Heterogeneous nuclear r 99.7 6.1E-17 2.1E-21 125.7 7.9 86 19-105 23-108 (116)
277 2dnp_A RNA-binding protein 14; 99.7 1.6E-16 5.4E-21 117.2 9.7 81 17-105 3-83 (90)
278 2cpx_A Hypothetical protein FL 99.7 6.2E-17 2.1E-21 125.5 7.9 91 15-105 17-107 (115)
279 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-16 4.5E-21 131.9 10.3 90 16-105 65-154 (165)
280 2dgt_A RNA-binding protein 30; 99.7 1.3E-16 4.5E-21 118.1 9.2 76 303-385 8-83 (92)
281 2hvz_A Splicing factor, argini 99.7 4.5E-17 1.6E-21 123.0 6.7 76 306-385 1-76 (101)
282 1fj7_A Nucleolin RBD1, protein 99.7 2.5E-17 8.6E-22 124.5 5.2 84 19-104 13-96 (101)
283 2e5j_A Methenyltetrahydrofolat 99.7 7.6E-17 2.6E-21 120.7 7.7 78 304-385 18-95 (97)
284 3zzy_A Polypyrimidine tract-bi 99.7 1.6E-16 5.6E-21 122.8 9.6 76 306-385 29-107 (130)
285 1iqt_A AUF1, heterogeneous nuc 99.7 2.2E-17 7.7E-22 117.3 4.4 74 307-381 1-75 (75)
286 1wel_A RNA-binding protein 12; 99.7 8E-17 2.7E-21 126.5 7.8 84 19-103 21-104 (124)
287 2lmi_A GRSF-1, G-rich sequence 99.7 7E-17 2.4E-21 123.1 7.3 83 18-102 6-91 (107)
288 1iqt_A AUF1, heterogeneous nuc 99.7 4.2E-17 1.4E-21 115.9 5.5 75 25-100 1-75 (75)
289 2cq2_A Hypothetical protein LO 99.7 5.4E-17 1.8E-21 122.6 6.1 77 303-384 23-106 (114)
290 2fc8_A NCL protein; structure 99.7 1.8E-16 6.1E-21 120.0 9.1 81 302-385 12-93 (102)
291 2dgu_A Heterogeneous nuclear r 99.7 2.7E-16 9.3E-21 119.1 10.1 82 16-105 4-85 (103)
292 3pgw_S U1-70K; protein-RNA com 99.7 7.8E-18 2.7E-22 160.4 1.8 82 304-385 101-183 (437)
293 1x4g_A Nucleolysin TIAR; struc 99.7 2.9E-16 9.8E-21 120.3 10.2 81 20-106 22-102 (109)
294 2hgm_A HNRPF protein, heteroge 99.7 6.8E-17 2.3E-21 125.4 6.6 81 303-385 40-122 (126)
295 2dnp_A RNA-binding protein 14; 99.7 1.3E-16 4.6E-21 117.6 7.9 76 303-385 7-82 (90)
296 1nu4_A U1A RNA binding domain; 99.7 7E-17 2.4E-21 121.1 6.4 84 18-104 3-90 (97)
297 2dha_A FLJ20171 protein; RRM d 99.7 8.3E-17 2.8E-21 124.7 6.9 80 20-101 20-103 (123)
298 2hgn_A Heterogeneous nuclear r 99.7 2.6E-17 8.7E-22 130.4 4.0 82 303-386 44-125 (139)
299 2f3j_A RNA and export factor b 99.7 1.8E-16 6.2E-21 132.0 9.3 83 303-385 86-168 (177)
300 2la4_A Nuclear and cytoplasmic 99.7 2.7E-16 9.4E-21 118.7 9.3 78 19-102 23-100 (101)
301 2jvo_A Nucleolar protein 3; nu 99.7 3.1E-16 1.1E-20 119.5 9.5 83 14-104 22-104 (108)
302 2cpx_A Hypothetical protein FL 99.7 9.6E-17 3.3E-21 124.5 6.8 83 303-385 23-106 (115)
303 2j8a_A Histone-lysine N-methyl 99.7 2.7E-16 9.1E-21 118.7 8.8 81 306-386 3-98 (136)
304 1sjr_A Polypyrimidine tract-bi 99.7 7.7E-16 2.6E-20 123.7 12.1 82 18-103 41-124 (164)
305 1fjc_A Nucleolin RBD2, protein 99.7 8.2E-17 2.8E-21 120.4 6.1 78 304-385 15-92 (96)
306 2lcw_A RNA-binding protein FUS 99.5 6.5E-18 2.2E-22 131.2 0.0 84 303-386 5-97 (116)
307 1wg1_A KIAA1579 protein, homol 99.7 2.4E-16 8.3E-21 115.5 8.4 74 304-383 4-77 (88)
308 2xs2_A Deleted in azoospermia- 99.7 7.6E-17 2.6E-21 122.0 5.8 81 304-386 8-88 (102)
309 2xnq_A Nuclear polyadenylated 99.7 5.2E-16 1.8E-20 115.8 10.1 81 15-103 14-95 (97)
310 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-16 8.4E-21 126.6 8.8 77 306-385 47-125 (164)
311 3egn_A RNA-binding protein 40; 99.7 1.1E-16 3.6E-21 129.3 6.7 85 302-386 42-132 (143)
312 2diu_A KIAA0430 protein; struc 99.7 2.2E-16 7.4E-21 112.5 7.1 71 306-385 10-85 (96)
313 2dgu_A Heterogeneous nuclear r 99.7 2.4E-16 8.1E-21 119.4 7.9 77 303-386 9-85 (103)
314 2kvi_A Nuclear polyadenylated 99.6 5.6E-16 1.9E-20 115.6 9.6 79 18-104 5-84 (96)
315 1fj7_A Nucleolin RBD1, protein 99.6 1.7E-17 5.8E-22 125.4 1.3 80 304-385 16-96 (101)
316 1wf1_A RNA-binding protein RAL 99.6 9.1E-16 3.1E-20 117.7 10.9 79 19-105 23-102 (110)
317 3q2s_C Cleavage and polyadenyl 99.6 3.2E-16 1.1E-20 136.2 9.4 82 22-103 67-150 (229)
318 2cqh_A IGF-II mRNA-binding pro 99.6 1.6E-16 5.6E-21 117.9 6.5 77 303-385 6-84 (93)
319 3d2w_A TAR DNA-binding protein 99.6 4.6E-16 1.6E-20 113.9 8.6 77 302-386 8-86 (89)
320 2e5i_A Heterogeneous nuclear r 99.6 5.9E-16 2E-20 119.4 9.4 74 307-385 27-103 (124)
321 2f3j_A RNA and export factor b 99.6 5.7E-16 2E-20 129.0 9.9 83 20-103 85-167 (177)
322 3beg_B Splicing factor, argini 99.6 3.9E-16 1.3E-20 120.5 8.0 76 15-97 8-83 (115)
323 2pe8_A Splicing factor 45; RRM 99.6 1.3E-15 4.6E-20 114.6 10.7 83 303-385 6-95 (105)
324 2e44_A Insulin-like growth fac 99.6 8.2E-16 2.8E-20 114.9 9.5 84 16-103 8-92 (96)
325 3zzy_A Polypyrimidine tract-bi 99.6 1.3E-15 4.3E-20 117.9 10.6 84 16-104 21-107 (130)
326 1wf1_A RNA-binding protein RAL 99.6 3.1E-16 1.1E-20 120.3 7.1 74 304-384 26-100 (110)
327 2lcw_A RNA-binding protein FUS 99.4 1.8E-17 6E-22 128.7 0.0 87 19-105 3-97 (116)
328 2cqh_A IGF-II mRNA-binding pro 99.6 4.9E-16 1.7E-20 115.4 7.7 81 18-105 3-85 (93)
329 2cpd_A Apobec-1 stimulating pr 99.6 9.4E-16 3.2E-20 115.2 9.0 76 303-385 13-90 (99)
330 2e5g_A U6 snRNA-specific termi 99.6 2.2E-15 7.4E-20 112.0 10.8 79 19-103 4-82 (94)
331 1x5p_A Negative elongation fac 99.6 1.1E-15 3.7E-20 114.3 9.1 76 303-385 13-88 (97)
332 2xs2_A Deleted in azoospermia- 99.6 2.6E-16 8.9E-21 119.1 5.6 83 18-103 4-86 (102)
333 2cpd_A Apobec-1 stimulating pr 99.6 3.7E-15 1.3E-19 112.0 11.9 82 16-105 8-91 (99)
334 1x5p_A Negative elongation fac 99.6 5E-15 1.7E-19 110.7 12.4 84 15-106 7-90 (97)
335 3beg_B Splicing factor, argini 99.6 7.9E-16 2.7E-20 118.8 8.0 74 304-383 15-93 (115)
336 1fjc_A Nucleolin RBD2, protein 99.6 5.8E-16 2E-20 115.7 7.0 84 16-104 9-92 (96)
337 2e5i_A Heterogeneous nuclear r 99.6 5.1E-15 1.8E-19 114.1 12.3 75 23-103 25-102 (124)
338 1wg1_A KIAA1579 protein, homol 99.6 1.4E-15 4.7E-20 111.5 8.3 76 21-103 3-78 (88)
339 2e44_A Insulin-like growth fac 99.6 1E-15 3.5E-20 114.4 7.6 79 304-385 14-93 (96)
340 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.8E-20 113.6 7.5 76 304-384 7-82 (94)
341 2j8a_A Histone-lysine N-methyl 99.6 1.2E-15 4E-20 115.2 6.9 80 24-103 3-96 (136)
342 2cq2_A Hypothetical protein LO 99.6 1.9E-15 6.7E-20 114.1 7.8 81 18-104 20-107 (114)
343 2bz2_A Negative elongation fac 99.6 2.2E-15 7.5E-20 117.0 8.0 77 302-385 36-112 (121)
344 3pgw_S U1-70K; protein-RNA com 99.6 6.2E-16 2.1E-20 147.3 5.3 156 30-190 4-182 (437)
345 2hzc_A Splicing factor U2AF 65 99.6 2.8E-15 9.7E-20 109.8 7.5 74 19-99 2-86 (87)
346 3u1l_A PRE-mRNA-splicing facto 99.6 2.3E-15 7.9E-20 129.7 8.2 80 302-386 131-231 (240)
347 2hzc_A Splicing factor U2AF 65 99.6 2.5E-15 8.6E-20 110.0 7.2 71 304-380 5-86 (87)
348 2dnl_A Cytoplasmic polyadenyla 99.6 3.8E-15 1.3E-19 114.8 8.6 78 20-100 5-85 (114)
349 2voo_A Lupus LA protein; RNA-b 99.6 5.6E-15 1.9E-19 124.9 10.0 78 305-383 109-186 (193)
350 2pe8_A Splicing factor 45; RRM 99.6 8.4E-15 2.9E-19 110.2 9.8 83 20-102 5-93 (105)
351 3egn_A RNA-binding protein 40; 99.6 9.2E-16 3.1E-20 123.8 4.6 82 20-104 42-131 (143)
352 3v4m_A Splicing factor U2AF 65 99.6 6.1E-15 2.1E-19 111.1 8.2 83 303-385 3-98 (105)
353 1wf0_A TDP-43, TAR DNA-binding 99.6 2.1E-15 7.1E-20 110.6 4.9 76 304-385 4-79 (88)
354 2dnl_A Cytoplasmic polyadenyla 99.6 6.6E-15 2.3E-19 113.5 7.6 76 304-382 7-86 (114)
355 3d2w_A TAR DNA-binding protein 99.5 8.5E-15 2.9E-19 107.1 7.4 77 18-103 6-84 (89)
356 2bz2_A Negative elongation fac 99.5 2.1E-14 7.2E-19 111.5 9.7 81 17-105 33-113 (121)
357 1jmt_A Splicing factor U2AF 35 99.5 3.4E-15 1.2E-19 112.3 4.3 72 310-381 20-103 (104)
358 3ue2_A Poly(U)-binding-splicin 99.5 2.7E-14 9.2E-19 109.5 8.6 82 303-384 18-109 (118)
359 1wf0_A TDP-43, TAR DNA-binding 99.5 7.5E-15 2.6E-19 107.6 5.3 78 21-105 3-80 (88)
360 2dit_A HIV TAT specific factor 99.5 5.4E-14 1.9E-18 107.9 9.8 80 303-385 13-103 (112)
361 2voo_A Lupus LA protein; RNA-b 99.5 3.1E-14 1.1E-18 120.3 9.0 80 22-103 108-187 (193)
362 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.8E-18 106.2 11.2 89 13-105 5-104 (112)
363 3v4m_A Splicing factor U2AF 65 99.5 9.4E-14 3.2E-18 104.6 7.5 83 21-103 3-97 (105)
364 3u1l_A PRE-mRNA-splicing facto 99.5 1.3E-13 4.6E-18 118.7 8.8 80 19-104 130-230 (240)
365 3ue2_A Poly(U)-binding-splicin 99.4 4.1E-13 1.4E-17 102.9 8.0 82 21-102 18-108 (118)
366 3s6e_A RNA-binding protein 39; 99.4 1.1E-12 3.7E-17 99.8 9.6 80 303-385 5-94 (114)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 9.6E-13 3.3E-17 97.5 8.8 65 315-385 27-91 (100)
368 1jmt_A Splicing factor U2AF 35 99.4 1.4E-13 4.8E-18 103.5 3.3 73 28-101 20-104 (104)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.5E-11 5.1E-16 91.1 12.9 77 22-105 9-92 (100)
370 3tht_A Alkylated DNA repair pr 99.3 1.6E-12 5.5E-17 118.3 8.2 76 302-382 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.8E-16 94.2 8.3 80 19-102 3-92 (114)
372 2dnr_A Synaptojanin-1; RRM dom 99.3 1.3E-11 4.4E-16 87.1 6.9 75 302-384 4-86 (91)
373 3tht_A Alkylated DNA repair pr 99.2 1.2E-11 4E-16 112.6 7.7 77 18-100 13-96 (345)
374 1owx_A Lupus LA protein, SS-B, 99.2 1.6E-10 5.4E-15 87.6 10.3 82 302-388 15-100 (121)
375 1owx_A Lupus LA protein, SS-B, 99.1 4.4E-10 1.5E-14 85.2 9.8 79 17-101 12-94 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.1 1.7E-10 5.9E-15 81.7 5.4 75 301-383 11-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 99.0 5.2E-10 1.8E-14 79.0 5.9 75 20-103 4-86 (91)
378 3dxb_A Thioredoxin N-terminall 98.9 1.7E-09 5.6E-14 94.0 7.5 69 317-385 141-214 (222)
379 2l9w_A U4/U6 snRNA-associated- 98.9 7.3E-09 2.5E-13 74.7 8.1 73 304-381 20-97 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 3.8E-09 1.3E-13 74.9 4.8 73 19-100 11-92 (95)
381 3dxb_A Thioredoxin N-terminall 98.7 3.1E-08 1E-12 85.9 8.5 82 21-102 122-212 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.5 2E-06 6.7E-11 61.8 11.3 89 22-125 7-100 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.2 3.4E-06 1.2E-10 60.9 7.0 72 21-98 19-95 (117)
384 1wey_A Calcipressin 1; structu 98.1 5.1E-06 1.8E-10 60.0 6.4 73 305-382 5-82 (104)
385 1uw4_A UPF3X; nonsense mediate 97.9 5.6E-05 1.9E-09 53.8 7.9 69 24-92 2-72 (91)
386 1wey_A Calcipressin 1; structu 97.8 2.9E-05 1E-09 56.1 5.4 75 23-103 5-84 (104)
387 1whv_A Poly(A)-specific ribonu 97.7 0.00027 9.1E-09 50.1 9.0 62 15-85 8-69 (100)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00032 1.1E-08 49.9 8.5 68 306-373 2-72 (91)
389 2dhx_A Poly (ADP-ribose) polym 97.6 0.00039 1.3E-08 49.9 8.5 70 304-381 7-81 (104)
390 1wwh_A Nucleoporin 35, nucleop 97.3 0.0011 3.8E-08 49.4 8.0 73 304-383 23-96 (119)
391 2l08_A Regulator of nonsense t 97.2 0.00034 1.2E-08 50.0 4.2 73 20-92 6-80 (97)
392 3ctr_A Poly(A)-specific ribonu 97.2 0.00093 3.2E-08 47.5 6.2 54 24-86 7-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 97.1 0.0014 4.8E-08 48.8 6.5 69 16-92 17-85 (119)
394 1whv_A Poly(A)-specific ribonu 97.1 0.0016 5.4E-08 46.2 6.3 56 305-367 15-70 (100)
395 2l08_A Regulator of nonsense t 96.9 0.0025 8.4E-08 45.5 6.1 68 306-373 10-80 (97)
396 3p3d_A Nucleoporin 53; structu 96.6 0.003 1E-07 47.7 5.4 78 306-385 8-100 (132)
397 3ctr_A Poly(A)-specific ribonu 96.5 0.0025 8.4E-08 45.4 3.9 54 307-367 7-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 96.4 0.0015 5.2E-08 61.6 3.0 58 21-84 51-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.3 0.011 3.7E-07 55.8 3.6 55 305-364 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 94.1 0.11 3.8E-06 39.2 6.0 76 112-189 8-98 (132)
401 3d45_A Poly(A)-specific ribonu 90.3 0.98 3.3E-05 43.5 8.8 57 22-87 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 79.7 3.5 0.00012 39.6 6.9 54 307-367 441-494 (507)
403 2g0c_A ATP-dependent RNA helic 68.5 4.3 0.00015 27.3 3.2 59 316-382 12-75 (76)
404 4eyt_A Telomerase associated p 62.8 34 0.0012 23.4 7.8 58 20-85 9-66 (129)
405 4e8u_A Putative uncharacterize 48.9 38 0.0013 26.9 5.8 51 307-359 14-75 (172)
406 2g0c_A ATP-dependent RNA helic 47.0 38 0.0013 22.4 5.0 57 35-100 13-74 (76)
407 4eyt_A Telomerase associated p 39.3 90 0.0031 21.3 7.0 74 305-385 12-92 (129)
408 3j21_T 50S ribosomal protein L 34.5 89 0.003 21.5 5.2 57 308-366 25-83 (86)
409 4e8u_A Putative uncharacterize 34.1 80 0.0027 25.0 5.5 50 25-77 14-74 (172)
410 3fry_A Probable copper-exporti 26.3 1.3E+02 0.0044 19.1 5.7 55 306-366 7-61 (73)
411 3ts2_A Protein LIN-28 homolog 25.2 18 0.00062 28.0 0.5 28 320-354 2-29 (148)
412 2okq_A Hypothetical protein YB 21.7 2.6E+02 0.009 21.1 6.6 45 41-85 51-110 (141)
413 4bby_A Alkyldihydroxyacetoneph 20.7 71 0.0024 31.8 3.9 53 314-366 352-408 (658)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1e-44 Score=331.41 Aligned_cols=257 Identities=22% Similarity=0.327 Sum_probs=229.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
.++++|||+|||+++++++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.|++..+.|+.+.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4679999999999999999999999999 999988 345689999999999999999999999999999999986
Q ss_pred cCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCC
Q 012896 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179 (454)
Q Consensus 101 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~ 179 (454)
.. ..+|+|+|||+.+++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|..|+..|++..+.|
T Consensus 93 ~~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PT--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CC--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CC--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 53 3689999999999999999999999999999999885 78999999999999999999999999999999
Q ss_pred ceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHH
Q 012896 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259 (454)
Q Consensus 180 ~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 259 (454)
+.|.+.++.......
T Consensus 165 ~~i~v~~a~~~~~~~----------------------------------------------------------------- 179 (284)
T 3smz_A 165 RTLYVHWTDAGQLTP----------------------------------------------------------------- 179 (284)
T ss_dssp EECEEEECCGGGCCT-----------------------------------------------------------------
T ss_pred cEEEEEECCCCCCCc-----------------------------------------------------------------
Confidence 999997754321100
Q ss_pred HHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcC-CHHHHHhccccCCCceEEEEe
Q 012896 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLKQLFSPFGSITSCKVM 338 (454)
Q Consensus 260 ~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~ 338 (454)
.....++|||+|||..+ ++++|+++|+.||.|.++++.
T Consensus 180 -----------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 180 -----------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp -----------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred -----------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 00235679999999995 999999999999999999999
Q ss_pred eCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchHHHHHHHHHHHhcc
Q 012896 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQM 398 (454)
Q Consensus 339 ~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 398 (454)
++.+|+++|+|||+|.+.++|.+|+..|||..|.|+.|+|.|+.++..++.....+..++
T Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aaq 278 (284)
T 3smz_A 219 CGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQ 278 (284)
T ss_dssp ECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHHT
T ss_pred ECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHHH
Confidence 999999999999999999999999999999999999999999999888776666555443
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.4e-44 Score=330.23 Aligned_cols=254 Identities=20% Similarity=0.368 Sum_probs=213.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
....+.++++|||+|||+++++++|+++|+.||+|.+|+++++... ++|||||+|.+.++|.+|++ +++..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 4456788999999999999999999999999999999999997643 47999999999999999995 89999999999
Q ss_pred eeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccC-ceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcC
Q 012896 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174 (454)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~ 174 (454)
.|.++. .++|||+|||+.+++++|+++|+.|| .|..+.+..+..+.++|||||+|.+.++|..|+..|++
T Consensus 111 ~v~~~~---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 111 IVSHLT---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EEEECC---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EEEECC---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 998763 56899999999999999999999999 99999999988788899999999999999999999999
Q ss_pred ceeCCceeEEecccccccchhhhccCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChH
Q 012896 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254 (454)
Q Consensus 175 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~ 254 (454)
..+.|+.|.+.++.+.......
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~---------------------------------------------------------- 203 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT---------------------------------------------------------- 203 (292)
T ss_dssp CEETTEECEEEECCCC----------------------------------------------------------------
T ss_pred CEeCCcEEEEEECCCCcccccc----------------------------------------------------------
Confidence 9999999999775433211000
Q ss_pred HHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCc-CCHHHHHhccccCCCce
Q 012896 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS-IDDEKLKQLFSPFGSIT 333 (454)
Q Consensus 255 ~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~ 333 (454)
.......++|||+|||.. +++++|+++|++||.|.
T Consensus 204 --------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~ 239 (292)
T 2ghp_A 204 --------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE 239 (292)
T ss_dssp -----------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred --------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence 001224568999999999 99999999999999999
Q ss_pred EEEEeeCCC--CCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 334 SCKVMRDPS--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 334 ~~~~~~~~~--~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
+|+++++.+ |.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+.++
T Consensus 240 ~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 240 KINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999876 999999999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.4e-34 Score=248.07 Aligned_cols=180 Identities=61% Similarity=1.038 Sum_probs=159.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+...+....+.++|||+|||++++|++|+++|++||+|.+|++++++.+++++|||||+|.+.++|.+|+..+++..+.|
T Consensus 5 s~~p~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 5 SMNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp ----------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 33344455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 012896 93 KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172 (454)
Q Consensus 93 ~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l 172 (454)
+.+++.++............+|||+|||+.+++++|+++|+.||.|..+.++.+. +.++|||||+|.+.++|.+|++.|
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 85 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHh
Confidence 9999999887766666677899999999999999999999999999999999875 447999999999999999999999
Q ss_pred cCceeCCceeEEecccccccc
Q 012896 173 NGMLLNDKQVYVGHFLRKQER 193 (454)
Q Consensus 173 ~~~~~~~~~l~v~~~~~~~~~ 193 (454)
++..+.|+.|.|.++.++...
T Consensus 164 ng~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp TTCEETTEECEEEECCCHHHH
T ss_pred CCCEECCEEEEEEEcCCCccc
Confidence 999999999999988765443
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.2e-32 Score=239.44 Aligned_cols=174 Identities=35% Similarity=0.521 Sum_probs=155.7
Q ss_pred CccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecc
Q 012896 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (454)
Q Consensus 200 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~ 278 (454)
.+.++|||+|||+.+++++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|..|+..+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 345789999999999999999999999999999999875 6899999999999999999999999999999999999988
Q ss_pred ccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHH
Q 012896 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~ 358 (454)
........ ....+|||+|||..+|+++|+++|++||.|.+|+|+++.. .++|||||+|.+.++
T Consensus 93 ~~~~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSLRK----------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHHHH----------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHH
T ss_pred cccccccc----------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHH
Confidence 76544322 1346799999999999999999999999999999998864 479999999999999
Q ss_pred HHHHHHHcCCceecCcceEEEEccchHHHHHH
Q 012896 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390 (454)
Q Consensus 359 A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~ 390 (454)
|.+|++.|||..|+|++|+|.+++++..+...
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 187 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHHHHHHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCcccchh
Confidence 99999999999999999999999987655443
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.1e-31 Score=223.02 Aligned_cols=164 Identities=26% Similarity=0.526 Sum_probs=154.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
|+|||+|||+++++++|+++|++||+|.+|++++++. ++++|||||+|.+.++|.+|+..|++..+.|+.++|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999864 678999999999999999999999999999999999999888
Q ss_pred CccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeC-CCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCcee
Q 012896 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182 (454)
Q Consensus 104 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l 182 (454)
.........+|+|+|||..+++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|..|+..|++..+.|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777778889999999999999999999999999999999988 478899999999999999999999999999999999
Q ss_pred EEeccc
Q 012896 183 YVGHFL 188 (454)
Q Consensus 183 ~v~~~~ 188 (454)
.|.++.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 998753
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=6.9e-31 Score=220.32 Aligned_cols=163 Identities=29% Similarity=0.560 Sum_probs=152.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
++++|||+|||+++++++|+++|++||+|.++++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.++|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57999999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCC-
Q 012896 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLND- 179 (454)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~- 179 (454)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.|++..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 6543 3456789999999999999999999999999999999986 78899999999999999999999999999977
Q ss_pred -ceeEEec
Q 012896 180 -KQVYVGH 186 (454)
Q Consensus 180 -~~l~v~~ 186 (454)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8888865
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-31 Score=220.23 Aligned_cols=165 Identities=32% Similarity=0.514 Sum_probs=152.1
Q ss_pred ceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccccc
Q 012896 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (454)
Q Consensus 203 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~ 282 (454)
++|+|+|||..+++++|.++|+.||.|.++.+..+..+.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999998888899999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHH
Q 012896 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361 (454)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~ 361 (454)
. ......++|||+|||..+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 123356789999999999999999999999999999999984 88999999999999999999
Q ss_pred HHHHcCCceecCcceEEEEccc
Q 012896 362 ALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 362 a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
|+..|||..++|+.|+|.||++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999863
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.8e-30 Score=217.65 Aligned_cols=163 Identities=33% Similarity=0.585 Sum_probs=150.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
++++|||+|||+++++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.++|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCc
Q 012896 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180 (454)
Q Consensus 102 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~ 180 (454)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.|++..+.|+
T Consensus 81 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 6533 3456789999999999999999999999999999999885 788999999999999999999999999999997
Q ss_pred e--eEEec
Q 012896 181 Q--VYVGH 186 (454)
Q Consensus 181 ~--l~v~~ 186 (454)
. |.+.+
T Consensus 159 ~~~i~v~~ 166 (167)
T 1fxl_A 159 TEPITVKF 166 (167)
T ss_dssp SSCCEEEE
T ss_pred ccceEEEe
Confidence 6 66554
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.9e-30 Score=225.10 Aligned_cols=177 Identities=24% Similarity=0.424 Sum_probs=154.3
Q ss_pred CccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecc
Q 012896 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (454)
Q Consensus 200 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~ 278 (454)
...++|||+|||..+++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|..|+..+++..+.|+.|.+.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 345789999999999999999999999999999998775 6889999999999999999999999999999999999988
Q ss_pred ccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHH
Q 012896 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~ 357 (454)
............ ........++|||+|||..+++++|+++|++||.|.+|+++++. +|+++|||||+|.+.+
T Consensus 106 ~~~~~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQ-------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHH-------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccccchhhhh-------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 765543222111 11223456899999999999999999999999999999999985 8899999999999999
Q ss_pred HHHHHHHHcCCceecCcceEEEEccc
Q 012896 358 EASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 358 ~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
+|.+|+..|||..|.|+.|+|.|+.+
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecC
Confidence 99999999999999999999999873
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.6e-30 Score=223.92 Aligned_cols=177 Identities=25% Similarity=0.433 Sum_probs=152.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
..+..+..+++|||+|||+++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp ---CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 3455677899999999999999999999999999999999999988899999999999999999999985 888999999
Q ss_pred eeeecccCCCccc----cCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHH
Q 012896 95 IRVMYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 169 (454)
Q Consensus 95 i~v~~~~~~~~~~----~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~ 169 (454)
|.|.++....... .....+|+|+|||+++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|..|+
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 9999987543222 2345789999999999999999999999999999999985 7889999999999999999999
Q ss_pred HHhcCceeCCceeEEecccccccc
Q 012896 170 EKLNGMLLNDKQVYVGHFLRKQER 193 (454)
Q Consensus 170 ~~l~~~~~~~~~l~v~~~~~~~~~ 193 (454)
.. ++..+.|+.|.|.++.++...
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HC-SCCEETTEECEEEECC-----
T ss_pred Hh-CCcEECCEEEEEEecCChhHh
Confidence 86 799999999999988776554
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.5e-30 Score=226.32 Aligned_cols=173 Identities=24% Similarity=0.433 Sum_probs=155.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
...+++|||+|||+++++++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred ccCCCcc---------ccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHH
Q 012896 100 SHRDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 169 (454)
Q Consensus 100 ~~~~~~~---------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~ 169 (454)
+...... ......+|+|+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 7655321 12456799999999999999999999999999999999985 7889999999999999999999
Q ss_pred HHhcCceeCCceeEEeccccccc
Q 012896 170 EKLNGMLLNDKQVYVGHFLRKQE 192 (454)
Q Consensus 170 ~~l~~~~~~~~~l~v~~~~~~~~ 192 (454)
+.|++..+.|+.|.|.++.....
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999999998776533
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=6e-30 Score=216.12 Aligned_cols=165 Identities=25% Similarity=0.411 Sum_probs=147.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCcCCC---Cccee
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSNAQEAARALEMLNFTPLN---GKPIR 96 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i~ 96 (454)
.+++|||+|||+++++++|+++|++||+|.++++++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 88999999999999999999999998775 56677
Q ss_pred eecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
+.++..... .....++|+|+|||+.+++++|+++|+.||.|..+.+..+.++.++|+|||+|.+.++|.+|++.|++..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 766554322 2335678999999999999999999999999999999999889999999999999999999999999987
Q ss_pred eC---CceeEEecc
Q 012896 177 LN---DKQVYVGHF 187 (454)
Q Consensus 177 ~~---~~~l~v~~~ 187 (454)
+. ++.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 76 388888764
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1e-29 Score=212.93 Aligned_cols=162 Identities=35% Similarity=0.609 Sum_probs=150.0
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
.++|+|+|||+.+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4689999999999999999999999999999999987 789999999999999999999999999999999999999876
Q ss_pred ccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 012896 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (454)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A 359 (454)
... ....++|+|+|||..+++++|+++|++||.|.++++..+. +|.++|+|||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 542 1245789999999999999999999999999999999986 888999999999999999
Q ss_pred HHHHHHcCCceecCcc--eEEEEc
Q 012896 360 SRALLEMNGKMVVSKP--LYVALA 381 (454)
Q Consensus 360 ~~a~~~l~g~~~~g~~--l~v~~~ 381 (454)
.+|++.|||..+.|+. |+|+||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 888886
No 14
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=4.4e-30 Score=215.44 Aligned_cols=163 Identities=34% Similarity=0.563 Sum_probs=151.0
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccc
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~ 279 (454)
+.++|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|+..+++..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999988874 68899999999999999999999999999999999999987
Q ss_pred cccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHH
Q 012896 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~ 358 (454)
+... ....++|+|+|||..+++++|+++|++||.|.+++++++. +|+++|+|||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 6542 2346789999999999999999999999999999999987 88999999999999999
Q ss_pred HHHHHHHcCCceecC--cceEEEEc
Q 012896 359 ASRALLEMNGKMVVS--KPLYVALA 381 (454)
Q Consensus 359 A~~a~~~l~g~~~~g--~~l~v~~~ 381 (454)
|.+|+..|||..+.| ++|+|+||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999988 99999986
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=8.7e-30 Score=219.31 Aligned_cols=177 Identities=24% Similarity=0.458 Sum_probs=148.7
Q ss_pred cCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEec
Q 012896 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (454)
Q Consensus 199 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~ 277 (454)
....++|||+|||+.+++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|..|+.. ++..+.|+.+.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 3456799999999999999999999999999999999885 588999999999999999999975 88999999999999
Q ss_pred cccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCH
Q 012896 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356 (454)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~ 356 (454)
+........ .......++|||+|||..+|+++|+++|++||.|.+|+++.+. +|.++|||||+|.+.
T Consensus 89 ~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 876533211 1123356789999999999999999999999999999999986 789999999999999
Q ss_pred HHHHHHHHHcCCceecCcceEEEEccchHHHHH
Q 012896 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389 (454)
Q Consensus 357 ~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~ 389 (454)
++|.+|+.. +|..|+|+.|.|.++.++.....
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 999999976 89999999999999987775443
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.6e-29 Score=213.59 Aligned_cols=164 Identities=28% Similarity=0.508 Sum_probs=146.5
Q ss_pred cceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCC---CceeEEEEEeCChHHHHHHHHHHcCCCCC---CceEEE
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG---KSKCFGFVNFENSDDAARAVEALNGKKFD---DKEWYV 275 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~~~v 275 (454)
.++|+|+|||+.+++++|+++|+.||.|.++.++.+..+ .++|||||+|.+.++|..|+..+++..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 578999999999999999999999999999999988754 79999999999999999999999998775 567777
Q ss_pred eccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCC
Q 012896 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355 (454)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~ 355 (454)
.++..... .....++|||+|||..+|+++|+++|++||.|.+++++++.+|+++|||||+|.+
T Consensus 83 ~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 83 KPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp EECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred cccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 76654322 1224568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceec---CcceEEEEcc
Q 012896 356 PEEASRALLEMNGKMVV---SKPLYVALAQ 382 (454)
Q Consensus 356 ~~~A~~a~~~l~g~~~~---g~~l~v~~~~ 382 (454)
.++|.+|+..|||..+. |++|+|+||.
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999998776 4999999984
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1e-29 Score=212.90 Aligned_cols=163 Identities=25% Similarity=0.485 Sum_probs=147.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECC-CCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccc
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~ 279 (454)
+.++|+|+|||..+++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|..|+. .+..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35789999999999999999999999999999998875 68999999999999999999997 4678899999998876
Q ss_pred cccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHH
Q 012896 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (454)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~ 358 (454)
+.... ...++|||+|||..+++++|+++|++||.|.++++..+. +|.++|||||+|.+.++
T Consensus 80 ~~~~~------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQ------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHH------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhc------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 54321 135689999999999999999999999999999999985 79999999999999999
Q ss_pred HHHHHHHcCCceecCcceEEEEccch
Q 012896 359 ASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 359 A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
|.+|++ ++|..+.|+.|+|.|+.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999997 8999999999999999865
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3.1e-30 Score=216.06 Aligned_cols=165 Identities=22% Similarity=0.482 Sum_probs=149.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
+++++|||+|||+++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|.+|+.. +..+.|+.+.+.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3579999999999999999999999999999999999988899999999999999999999994 56789999999887
Q ss_pred cCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCC
Q 012896 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179 (454)
Q Consensus 101 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~ 179 (454)
..... ....++|+|+|||+.+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++ +++..+.|
T Consensus 79 ~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 79 IPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred cchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 65422 2345689999999999999999999999999999999885 68899999999999999999998 89999999
Q ss_pred ceeEEeccccc
Q 012896 180 KQVYVGHFLRK 190 (454)
Q Consensus 180 ~~l~v~~~~~~ 190 (454)
+.|.|.++.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999887654
No 19
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=5.3e-30 Score=216.33 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=149.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
...+..+++|||+|||+++++++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 346678999999999999999999999999987766 334444567889999999999999999995 999999999999
Q ss_pred eecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
|.++............+|+|+|||+.+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|..|+..|++..
T Consensus 85 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 85 LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp EECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred EecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 999987766666677899999999999999999999999988765 5567889999999999999999999999999
Q ss_pred eCCceeEEeccccc
Q 012896 177 LNDKQVYVGHFLRK 190 (454)
Q Consensus 177 ~~~~~l~v~~~~~~ 190 (454)
+.|+.|.|.++.++
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999887654
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.5e-28 Score=206.88 Aligned_cols=158 Identities=25% Similarity=0.523 Sum_probs=143.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~----G-------~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 89 (454)
+++++|||+|||+++++++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999999999 7 788887754 3579999999999999999 799999
Q ss_pred CCCcceeeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHH
Q 012896 90 LNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKA 168 (454)
Q Consensus 90 ~~g~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a 168 (454)
+.|+.++|.++..... .....+|+|+|||+.+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|
T Consensus 75 ~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999998765432 2447899999999999999999999999999999999995 789999999999999999999
Q ss_pred HHHhcCceeCCceeEEecc
Q 012896 169 IEKLNGMLLNDKQVYVGHF 187 (454)
Q Consensus 169 ~~~l~~~~~~~~~l~v~~~ 187 (454)
++.|++..+.|+.|.|.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999865
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=2.9e-28 Score=222.26 Aligned_cols=173 Identities=22% Similarity=0.322 Sum_probs=159.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
...++|+|+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCCcc-ccCCCcceeeecCCccc-ChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC
Q 012896 101 HRDPSL-RKSGAGNIFIKNLDKAI-DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (454)
Q Consensus 101 ~~~~~~-~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~ 178 (454)
...... ......+|+|+|||+.+ ++++|+++|+.||.|..+.+..+.++.++|+|||+|.+.++|..|+..|++..+.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 765432 22456789999999995 9999999999999999999999989999999999999999999999999999999
Q ss_pred CceeEEecccccccc
Q 012896 179 DKQVYVGHFLRKQER 193 (454)
Q Consensus 179 ~~~l~v~~~~~~~~~ 193 (454)
|+.|.|.++.++...
T Consensus 253 g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 253 GSHLRVSFCAPGPPG 267 (284)
T ss_dssp TEECEEEECCSSSCH
T ss_pred CeEEEEEEecCCCcc
Confidence 999999998776554
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.4e-28 Score=211.15 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=135.6
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 21 FGTTSLYVGDLE-ANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 21 ~~~~~l~V~nLp-~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
.++++|||+||| .++++++|+++|++||.|.+|+++++ .+|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999865 358999999999999999999999999999999998
Q ss_pred ccCCCccc-----------------------------------cCCCcceeeecCCcccChHHHhhhhcccCce--eEEE
Q 012896 100 SHRDPSLR-----------------------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNI--LSCK 142 (454)
Q Consensus 100 ~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v--~~~~ 142 (454)
++...... ....++|+|+|||+++++++|+++|+.||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 86321100 0123579999999999999999999999999 8999
Q ss_pred EeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCce
Q 012896 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181 (454)
Q Consensus 143 ~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~ 181 (454)
++.+. +..+|+|||+|.+.++|..|+..|++..+.++.
T Consensus 157 ~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 157 VFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp ECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 98775 445699999999999999999999999998763
No 23
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=3.3e-28 Score=209.73 Aligned_cols=163 Identities=25% Similarity=0.493 Sum_probs=144.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~----G-------~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
.+++|||+|||+++++++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57999999999999999999999999 5 66666664 34689999999999999999 7999999
Q ss_pred CCcceeeecccCCCcc------------------ccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCe
Q 012896 91 NGKPIRVMYSHRDPSL------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQS 151 (454)
Q Consensus 91 ~g~~i~v~~~~~~~~~------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~ 151 (454)
.|+.|+|.++...... ......+|+|+|||+.+++++|+++|+.||.|..+.+..+. ++.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999988654211 11356899999999999999999999999999999999986 7889
Q ss_pred eeEEEEEecCHHHHHHHHHHhcCceeCCceeEEecccccc
Q 012896 152 KGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (454)
Q Consensus 152 ~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~ 191 (454)
+|+|||+|.+.++|..|++.|++..+.|+.|.|.++.++.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999876553
No 24
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=5.1e-28 Score=220.45 Aligned_cols=165 Identities=22% Similarity=0.420 Sum_probs=146.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
..+..++++|||+|||+++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|.+|++.||+..+.|
T Consensus 3 ~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 3 VPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 3456789999999999999999966 8999999999999876 57788999999999999999999999999999
Q ss_pred cceeeecccCCCc-------------------------------------------------------------------
Q 012896 93 KPIRVMYSHRDPS------------------------------------------------------------------- 105 (454)
Q Consensus 93 ~~i~v~~~~~~~~------------------------------------------------------------------- 105 (454)
+.|+|.++.....
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 9999998865431
Q ss_pred ------------------------------------------cccCCCcceeeecCCcccChHHHhhhhcccCceeEEEE
Q 012896 106 ------------------------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143 (454)
Q Consensus 106 ------------------------------------------~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~ 143 (454)
......++|||+|||..+++++|+++|+.||.|.++.+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEE
Confidence 01113467999999999999999999999999999999
Q ss_pred eeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CceeEEeccc
Q 012896 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFL 188 (454)
Q Consensus 144 ~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-~~~l~v~~~~ 188 (454)
..+. +|+|||+|.+.++|..|++.|++..+. |+.|.|.++.
T Consensus 240 ~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 8653 589999999999999999999999999 9999998753
No 25
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.9e-28 Score=206.29 Aligned_cols=158 Identities=23% Similarity=0.466 Sum_probs=142.5
Q ss_pred ccceEEEeCCCCCCCHHHHHHhhccc----C-------CeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCC
Q 012896 201 KFTNVYVKNLSESTTEEDLQKSFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (454)
Q Consensus 201 ~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 269 (454)
+.++|+|+|||..+++++|+++|+.| | .|..+.+. .++|+|||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 35789999999999999999999999 6 66666665 45889999999999999999 89999999
Q ss_pred CceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceE
Q 012896 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGS 348 (454)
Q Consensus 270 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~ 348 (454)
|+.+.+.++..... ....++|||+|||..+++++|+++|++||.|.++++.++. +|.++|+
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999998765321 1236789999999999999999999999999999999996 8999999
Q ss_pred EEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 349 afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
|||+|.+.++|.+|++.|||..++|+.|.|.||.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999973
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=4.2e-28 Score=213.29 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=148.0
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 012896 9 QNVNGGGANANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (454)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 87 (454)
.+...+..+....++++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|++
T Consensus 20 ~~g~~~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g 94 (229)
T 2adc_A 20 HMGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG 94 (229)
T ss_dssp --CCCCCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTT
T ss_pred hccCcCCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCC
Confidence 3344444555567889999999999 99999999999999999999998864 57999999999999999999999
Q ss_pred cCCCCcceeeecccCCCcc---------------------------------ccCCCcceeeecCCcccChHHHhhhhcc
Q 012896 88 TPLNGKPIRVMYSHRDPSL---------------------------------RKSGAGNIFIKNLDKAIDHKALHDTFSA 134 (454)
Q Consensus 88 ~~~~g~~i~v~~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 134 (454)
..+.|+.|+|.++...... ......+|+|+|||..+++++|+++|+.
T Consensus 95 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~ 174 (229)
T 2adc_A 95 HKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS 174 (229)
T ss_dssp CBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT
T ss_pred CeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 9999999999988643100 0112578999999999999999999999
Q ss_pred cC-ceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CceeEEecccc
Q 012896 135 FG-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLR 189 (454)
Q Consensus 135 ~g-~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-~~~l~v~~~~~ 189 (454)
|| .|..+.++.+ .+|+|||+|.+.++|..|+..|++..+. |+.|.|.++.+
T Consensus 175 ~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 175 NGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp TSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred cCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99 9999999653 3679999999999999999999999999 99999988654
No 27
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=4.4e-29 Score=210.70 Aligned_cols=165 Identities=22% Similarity=0.375 Sum_probs=143.2
Q ss_pred cCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecc
Q 012896 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (454)
Q Consensus 199 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~ 278 (454)
....++|+|+|||..+++++|+++|+.||.+..+.+....++.++|||||+|.+.++|..|+ .+++..+.|+.+.+.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 44568999999999999999999999998766533334445778999999999999999999 59999999999999998
Q ss_pred ccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHH
Q 012896 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~ 358 (454)
...... .....++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++
T Consensus 89 ~~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~ 148 (175)
T 1fje_B 89 KGRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEAD 148 (175)
T ss_dssp CCSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHH
T ss_pred CCcccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHH
Confidence 765321 12245789999999999999999999999988766 5678899999999999999
Q ss_pred HHHHHHHcCCceecCcceEEEEccch
Q 012896 359 ASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 359 A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
|.+|+..|||..|.|+.|+|.|++++
T Consensus 149 A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 149 AEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999765
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=1.5e-28 Score=211.01 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=141.8
Q ss_pred ccceEEEeCCC-CCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccc
Q 012896 201 KFTNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (454)
Q Consensus 201 ~~~~l~v~nl~-~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~ 279 (454)
+..+|+|+||+ ..+++++|+++|+.||.|.++.++.+ .+|+|||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45789999999 79999999999999999999998754 37899999999999999999999999999999999886
Q ss_pred cccHHHHH---HH------HHH--------HH--hhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCc--eEEEEe
Q 012896 280 KKSERELE---LK------HQF--------EQ--NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI--TSCKVM 338 (454)
Q Consensus 280 ~~~~~~~~---~~------~~~--------~~--~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~~~ 338 (454)
........ .. ..+ .. .........+.++|||+|||+.+|+++|+++|++||.| .++++.
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43210000 00 000 00 00000012456789999999999999999999999999 899998
Q ss_pred eCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCc----ceEEEEc
Q 012896 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK----PLYVALA 381 (454)
Q Consensus 339 ~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~----~l~v~~~ 381 (454)
.+. +..+|+|||+|.+.++|.+|+..|||..|.|+ ++.|+|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 876 45579999999999999999999999999876 6777765
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.3e-27 Score=217.67 Aligned_cols=178 Identities=21% Similarity=0.373 Sum_probs=147.3
Q ss_pred cCccceEEEeCCCCCCCHHHHH----HhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEE
Q 012896 199 KSKFTNVYVKNLSESTTEEDLQ----KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274 (454)
Q Consensus 199 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 274 (454)
..+.++|||+|||..+++++|+ ++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..+++..+.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3456899999999999999966 8999999999998876 667899999999999999999999999999999999
Q ss_pred EeccccccHHHHHHHHHH-----------------HHhh-----------------------------------------
Q 012896 275 VGKAQKKSERELELKHQF-----------------EQNM----------------------------------------- 296 (454)
Q Consensus 275 v~~~~~~~~~~~~~~~~~-----------------~~~~----------------------------------------- 296 (454)
|.++.............. ....
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999866442110000000 0000
Q ss_pred -----------------------------------HHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC
Q 012896 297 -----------------------------------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341 (454)
Q Consensus 297 -----------------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 341 (454)
.......+.++|||+|||..+++++|+++|++||.|.+|++..+.
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 000123356789999999999999999999999999999999763
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCceec-CcceEEEEcc
Q 012896 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQ 382 (454)
Q Consensus 342 ~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~~~ 382 (454)
+|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 589999999999999999999999999 9999999986
No 30
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.9e-27 Score=212.14 Aligned_cols=161 Identities=27% Similarity=0.497 Sum_probs=145.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
.....++++|||+|||+++|+++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 444567789999999999999999999999999999999653 57999999999999999999999999999999
Q ss_pred eecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHh-cCc
Q 012896 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL-NGM 175 (454)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l-~~~ 175 (454)
|.++.. ..+|+|+|||+.+++++|+++|+.||.|..+.++.+.++.++|+|||+|.+.++|..|+..| ++.
T Consensus 90 v~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 90 IRFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp EEECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred eeeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 999875 36899999999999999999999999999999999988999999999999999999999999 455
Q ss_pred eeC---CceeEEecccccc
Q 012896 176 LLN---DKQVYVGHFLRKQ 191 (454)
Q Consensus 176 ~~~---~~~l~v~~~~~~~ 191 (454)
.+. ++.+.|.+.....
T Consensus 162 ~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 162 FLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EESSSSCCBCEEEECCCEE
T ss_pred EEecCCCceEEEeeccccC
Confidence 554 8999998876543
No 31
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1e-27 Score=219.50 Aligned_cols=168 Identities=21% Similarity=0.371 Sum_probs=146.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
..+++|||+|||+++++++|+++|+.|| .|..+.+++++. +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3689999999999999999999999999 999999998765 77899999999999999999999999999999999999
Q ss_pred ccCCCcc-----ccCCCcceeeecCCcc-cChHHHhhhhcccCceeEEEEeeCCC--CCeeeEEEEEecCHHHHHHHHHH
Q 012896 100 SHRDPSL-----RKSGAGNIFIKNLDKA-IDHKALHDTFSAFGNILSCKVATDLN--GQSKGYGFVQFDNEESAQKAIEK 171 (454)
Q Consensus 100 ~~~~~~~-----~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~g~a~V~f~~~~~A~~a~~~ 171 (454)
+...... ......+|+|+|||+. +++++|+++|+.||.|..+.+..+.. +.++|+|||+|.+.++|..|+ .
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 8765432 2235688999999999 99999999999999999999999876 899999999999999999999 9
Q ss_pred hcCceeCCceeEEeccccc
Q 012896 172 LNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 172 l~~~~~~~~~l~v~~~~~~ 190 (454)
|++..+.|+.|.|.++.++
T Consensus 273 l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GTTEEETTEEEEEEECCCC
T ss_pred hcCCEECCcEEEEEEecCC
Confidence 9999999999999987654
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.2e-27 Score=210.43 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=146.6
Q ss_pred cCccceEEEeCCCC-CCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEec
Q 012896 199 KSKFTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (454)
Q Consensus 199 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~ 277 (454)
....++|||+|||+ .+++++|+++|+.||.|..+.+..+. +|||||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45578999999999 99999999999999999999998764 68999999999999999999999999999999998
Q ss_pred cccccHHHHH-------HHHHH----------HHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCC-CceEEEEee
Q 012896 278 AQKKSERELE-------LKHQF----------EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMR 339 (454)
Q Consensus 278 ~~~~~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~ 339 (454)
+......... ..... ...........+.++|||+|||..+++++|+++|++|| .|.+|++.+
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 8654211000 00000 00000011234578899999999999999999999999 999999966
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHcCCceec-CcceEEEEccch
Q 012896 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQRK 384 (454)
Q Consensus 340 ~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~~~~~ 384 (454)
+ .+|+|||+|.+.++|.+|+..|||..+. |+.|+|.|++++
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4 3789999999999999999999999999 999999999753
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=3.4e-27 Score=203.39 Aligned_cols=178 Identities=21% Similarity=0.397 Sum_probs=145.9
Q ss_pred cceEEEeCCCCCCCHHHHHHhhccc----C-------CeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCC
Q 012896 202 FTNVYVKNLSESTTEEDLQKSFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD 270 (454)
Q Consensus 202 ~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 270 (454)
.++|+|+|||..+++++|.++|+.| | .|..+.+. .++|||||+|.+.++|..|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 5789999999999999999999999 5 55555553 56899999999999999999 799999999
Q ss_pred ceEEEeccccccHHHHHHHHH--HHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcce
Q 012896 271 KEWYVGKAQKKSERELELKHQ--FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRG 347 (454)
Q Consensus 271 ~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g 347 (454)
+.+.+.++............. ..............++|||+|||..+++++|+++|++||.|.++++.++. +|.++|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 999999886542110000000 00000011112456899999999999999999999999999999999996 899999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 348 ~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
||||+|.+.++|.+|+..|||..|+|+.|+|.|++++.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999998654
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1e-26 Score=208.58 Aligned_cols=158 Identities=29% Similarity=0.508 Sum_probs=144.8
Q ss_pred cCccceEEEeCCCCCCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecc
Q 012896 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (454)
Q Consensus 199 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~ 278 (454)
....++|||+|||+.+++++|+++|+.||.|..+.+. +++|+|||+|.+.++|..|+..+++..+.|+.+.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4456789999999999999999999999999999986 34789999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHH
Q 012896 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEE 358 (454)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~ 358 (454)
.+ .++|||+|||..+|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++
T Consensus 94 ~~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 TH------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CC------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred cc------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 63 457999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC-Cceec---CcceEEEEccchH
Q 012896 359 ASRALLEMN-GKMVV---SKPLYVALAQRKE 385 (454)
Q Consensus 359 A~~a~~~l~-g~~~~---g~~l~v~~~~~~~ 385 (454)
|.+|+..|| |..+. +++|.|.++....
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999995 44544 9999999997543
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.8e-27 Score=203.75 Aligned_cols=159 Identities=23% Similarity=0.336 Sum_probs=141.1
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 22 GTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 22 ~~~~l~V~nLp~-~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
.+++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 579999999999999999999999999999999988
Q ss_pred cCCCcc---------------------------------ccCCCcceeeecCCcccChHHHhhhhcccC-ceeEEEEeeC
Q 012896 101 HRDPSL---------------------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATD 146 (454)
Q Consensus 101 ~~~~~~---------------------------------~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~v~~~~~~~~ 146 (454)
...... ......+|+|+|||..+++++|+++|+.|| .|..+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 643110 012367799999999999999999999999 9999999764
Q ss_pred CCCCeeeEEEEEecCHHHHHHHHHHhcCceeC-CceeEEecccc
Q 012896 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLR 189 (454)
Q Consensus 147 ~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~-~~~l~v~~~~~ 189 (454)
.+|+|||+|.+.++|..|+..|++..+. |+.|.+.++.+
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 2689999999999999999999999999 99999987654
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1.4e-26 Score=199.40 Aligned_cols=175 Identities=22% Similarity=0.317 Sum_probs=143.9
Q ss_pred cceEEEeCCCC-CCCHHHHHHhhcccCCeeEEEEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEecccc
Q 012896 202 FTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (454)
Q Consensus 202 ~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~ 280 (454)
.++|+|+|||+ .+++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|..|+..+++..+.|+.+.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 46899999999 99999999999999999999988653 67999999999999999999999999999999998865
Q ss_pred ccHHHHHHHH-------HHHH----------hhHHHhhhcCCceEEEecCCCcCCHHHHHhccccCC-CceEEEEeeCCC
Q 012896 281 KSERELELKH-------QFEQ----------NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPS 342 (454)
Q Consensus 281 ~~~~~~~~~~-------~~~~----------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 342 (454)
.......... .... .........+.++|||+|||..+++++|+++|++|| .|.++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 4211000000 0000 000001123478899999999999999999999999 9999999765
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCceec-CcceEEEEccch
Q 012896 343 GISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQRK 384 (454)
Q Consensus 343 ~~~~g~afv~f~~~~~A~~a~~~l~g~~~~-g~~l~v~~~~~~ 384 (454)
.+|+|||+|.+.++|.+|+..|||..+. |+.|+|.|++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999999753
No 37
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=145.14 Aligned_cols=82 Identities=38% Similarity=0.641 Sum_probs=78.0
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
...+++|||+|||..+|+++|+++|++||.|.+|+++++. +|+++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567889999999999999999999999999999999986 799999999999999999999999999999999999999
Q ss_pred ccc
Q 012896 381 AQR 383 (454)
Q Consensus 381 ~~~ 383 (454)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.2e-21 Score=150.24 Aligned_cols=105 Identities=29% Similarity=0.509 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
..+.+|||+|||+++++++|+++|++||.|.+|++++++ +.++|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356789999999999999999999999999999999985 347899999999999999999999999999999999998
Q ss_pred cCCCcc------ccCCCcceeeecCCcccChHH
Q 012896 101 HRDPSL------RKSGAGNIFIKNLDKAIDHKA 127 (454)
Q Consensus 101 ~~~~~~------~~~~~~~l~v~nlp~~~~~~~ 127 (454)
...... ......+|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 754322 122345799999999998763
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1e-21 Score=162.03 Aligned_cols=147 Identities=20% Similarity=0.276 Sum_probs=109.8
Q ss_pred EEEECCCCCceeEEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEec
Q 012896 233 VVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKN 312 (454)
Q Consensus 233 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 312 (454)
.++.+.. .++||+||+|.+.++|.+|+..+++....+..+.............. .............++|||+|
T Consensus 4 kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 4 KLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-----SHHHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-----CCCSSCCCCCCBCCEEEEES
T ss_pred EEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-----ccccccccCCCCCCEEEEeC
Confidence 3444433 68999999999999999999887754433333333222111000000 00000111223467899999
Q ss_pred CCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 313 LDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 313 l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
||..+++++|+++|++||.|.+|+++++. +|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.++++..
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999985 89999999999999999999999999999999999999997543
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=142.73 Aligned_cols=90 Identities=14% Similarity=0.274 Sum_probs=82.5
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
++.++|||+|||..+++++|+++|++||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457889999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHH
Q 012896 382 QRKEDRRARLQ 392 (454)
Q Consensus 382 ~~~~~~~~~~~ 392 (454)
.....+.....
T Consensus 84 ~~~~~~~~~~~ 94 (110)
T 3s8s_A 84 IKGQQRMKYYE 94 (110)
T ss_dssp STTHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 87766554433
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=140.29 Aligned_cols=82 Identities=40% Similarity=0.633 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
.++++|||+|||+++|+++|+++|++||+|.++++++++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 012896 101 HR 102 (454)
Q Consensus 101 ~~ 102 (454)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=1.3e-20 Score=153.66 Aligned_cols=138 Identities=20% Similarity=0.308 Sum_probs=112.3
Q ss_pred CCceeEEEEEeCChHHHHHHHHHH-cCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCC
Q 012896 240 GKSKCFGFVNFENSDDAARAVEAL-NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318 (454)
Q Consensus 240 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 318 (454)
...+|+++++|.+.++|.+|+..+ ++..++| .+.+.++........... ..............++|||+|||..++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCC
Confidence 466899999999999999999999 9999999 999988765321100000 000000112234568899999999999
Q ss_pred HHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 319 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999887 6899999999999999999999999999999999999765
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=137.97 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.+++.++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 88754
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=135.56 Aligned_cols=95 Identities=28% Similarity=0.503 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
|+++......++++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 1 G~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 1 GSSGSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCSCCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34556667788999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CcceeeecccCCCcc
Q 012896 92 GKPIRVMYSHRDPSL 106 (454)
Q Consensus 92 g~~i~v~~~~~~~~~ 106 (454)
|+.|+|.++......
T Consensus 81 g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 81 GRQIRVDQAGKSSDN 95 (102)
T ss_dssp SCCCEEEEEECCCCC
T ss_pred CeEEEEEECCCCCCC
Confidence 999999999876543
No 45
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=134.26 Aligned_cols=92 Identities=25% Similarity=0.443 Sum_probs=84.6
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC
Q 012896 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 89 (454)
..+++.......+.++|||+|||+++++++|+++|++||+|..+.+++++.++.++|||||+|.+.++|.+|++.||+..
T Consensus 3 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 3 SGSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ 82 (94)
T ss_dssp CCCCCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe
Confidence 34555666677889999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CCCcceeeeccc
Q 012896 90 LNGKPIRVMYSH 101 (454)
Q Consensus 90 ~~g~~i~v~~~~ 101 (454)
+.|+.|+|.+++
T Consensus 83 ~~g~~l~v~~ak 94 (94)
T 2e5h_A 83 LFGRVIKASIAI 94 (94)
T ss_dssp ETTEEEEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998874
No 46
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.6e-19 Score=147.61 Aligned_cols=139 Identities=14% Similarity=0.240 Sum_probs=109.9
Q ss_pred EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee-------ecccC----CCccccCCCcceeeecCC
Q 012896 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-------MYSHR----DPSLRKSGAGNIFIKNLD 120 (454)
Q Consensus 52 ~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v-------~~~~~----~~~~~~~~~~~l~v~nlp 120 (454)
++.++.+.. .++|||||+|.+.++|++|+..+++....+..+.+ ..... ..........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 456776643 58899999999999999999887643222222211 11111 111222446799999999
Q ss_pred cccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccccccc
Q 012896 121 KAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192 (454)
Q Consensus 121 ~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~~~ 192 (454)
+++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|..|++.|++..+.|+.|.|.++.....
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999999985 789999999999999999999999999999999999998876533
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=6.6e-20 Score=135.52 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCC--ceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCc----eecCcce
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGS--ITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK----MVVSKPL 376 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~----~~~g~~l 376 (454)
...+|||+|||+.+|+++|+++|++||. |.+|++++|+ +|+++|||||+|.+.++|.+|++.|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3568999999999999999999999995 6799999986 7999999999999999999999999996 5899999
Q ss_pred EEEEccc
Q 012896 377 YVALAQR 383 (454)
Q Consensus 377 ~v~~~~~ 383 (454)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-20 Score=137.27 Aligned_cols=81 Identities=20% Similarity=0.367 Sum_probs=74.4
Q ss_pred CceEEEecCCCcCCHHHHHhccccCC-CceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcC-CceecCcceEEEEc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMN-GKMVVSKPLYVALA 381 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~-g~~~~g~~l~v~~~ 381 (454)
+++|||+|||..+|+++|+++|++|| .|.+|+|++++ +|+++|||||+|.+.++|.+|++.++ +..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 35799999999999999999999999 89999999986 79999999999999999999998875 56899999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.4e-19 Score=140.04 Aligned_cols=83 Identities=43% Similarity=0.733 Sum_probs=75.6
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.++|||+|||..+|+++|+++|++||.|.+|+|+++.. .++|||||+|.+.++|.+|++.|||..|+|+.|+|.+++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 56899999999999999999999999999999999864 47999999999999999999999999999999999999876
Q ss_pred HHHH
Q 012896 385 EDRR 388 (454)
Q Consensus 385 ~~~~ 388 (454)
..+.
T Consensus 84 ~~~~ 87 (115)
T 4f25_A 84 KERE 87 (115)
T ss_dssp CC--
T ss_pred cccc
Confidence 5433
No 50
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=134.45 Aligned_cols=86 Identities=17% Similarity=0.394 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC--eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC----C
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP----L 90 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~--v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~----~ 90 (454)
........||||+|||+++|+++|+++|++||. |.+|++++|+.+++++|||||+|.+.++|++|++.||+.. +
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 345677899999999999999999999999995 6799999999999999999999999999999999999874 7
Q ss_pred CCcceeeecccC
Q 012896 91 NGKPIRVMYSHR 102 (454)
Q Consensus 91 ~g~~i~v~~~~~ 102 (454)
+|++|.|.+++.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 899999999875
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=132.77 Aligned_cols=95 Identities=31% Similarity=0.561 Sum_probs=86.8
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
+.........++++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 4 GSSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CSSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34455666788999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CcceeeecccCCCcc
Q 012896 92 GKPIRVMYSHRDPSL 106 (454)
Q Consensus 92 g~~i~v~~~~~~~~~ 106 (454)
|+.|+|.++......
T Consensus 84 g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 84 GKPIRVNKASAHNKN 98 (105)
T ss_dssp SCBCEEEETTTTSCC
T ss_pred CeEEEEEECCCCCcC
Confidence 999999999876543
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.7e-19 Score=128.44 Aligned_cols=80 Identities=38% Similarity=0.622 Sum_probs=76.1
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
.+|||+|||..+++++|+++|++||.|.+++++++. ++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999999984 8999999999999999999999999999999999999999865
Q ss_pred H
Q 012896 385 E 385 (454)
Q Consensus 385 ~ 385 (454)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=135.28 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=76.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CcCCCCcceeeecc
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN-FTPLNGKPIRVMYS 100 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~i~v~~~ 100 (454)
+++|||+|||+++||++|+++|++|| .|.+|++++++.++.++|||||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred cCCCc
Q 012896 101 HRDPS 105 (454)
Q Consensus 101 ~~~~~ 105 (454)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 54
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.5e-19 Score=132.87 Aligned_cols=93 Identities=23% Similarity=0.400 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
.+..+....++++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.||+..+.|
T Consensus 3 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 3 SGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp CCCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34456667788999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cceeeecccCCCc
Q 012896 93 KPIRVMYSHRDPS 105 (454)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (454)
+.|+|.++.....
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 83 RELRVQVARYGRR 95 (103)
T ss_dssp BCCEEEECSSCCS
T ss_pred cEEEEEECCcCCC
Confidence 9999999987644
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=129.74 Aligned_cols=81 Identities=28% Similarity=0.550 Sum_probs=75.5
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
+.++|||+|||..+++++|+++|++||.|.++++..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56789999999999999999999999999999999985 89999999999999999999999999999999999999997
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 56
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=131.37 Aligned_cols=91 Identities=31% Similarity=0.421 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
++......+.++++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 4 GSSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44556667788999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CcceeeecccC
Q 012896 92 GKPIRVMYSHR 102 (454)
Q Consensus 92 g~~i~v~~~~~ 102 (454)
|+.|+|.+++.
T Consensus 84 g~~l~v~~a~~ 94 (95)
T 2cqc_A 84 GRRIRVSGPSS 94 (95)
T ss_dssp TEEEEEECCSC
T ss_pred CEEEEEEecCC
Confidence 99999998864
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=7.9e-19 Score=138.36 Aligned_cols=91 Identities=32% Similarity=0.429 Sum_probs=84.7
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
.+....+.++++|||+|||+++++++|+++|++||+|..|++++++.+++++|||||+|.+.++|++|++.|++..|.|+
T Consensus 37 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 37 VGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34556678899999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|.++....
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 58
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=130.18 Aligned_cols=90 Identities=22% Similarity=0.484 Sum_probs=82.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
......++++|||+|||.++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|++|++ |++..+.|+.|
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 34556788999999999999999999999999999999999998889999999999999999999999 99999999999
Q ss_pred eeecccCCCcc
Q 012896 96 RVMYSHRDPSL 106 (454)
Q Consensus 96 ~v~~~~~~~~~ 106 (454)
+|.++......
T Consensus 82 ~V~~a~~~~~~ 92 (99)
T 2dgs_A 82 EVKRAEPRDSK 92 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99999876443
No 59
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=134.73 Aligned_cols=94 Identities=28% Similarity=0.439 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+++......+.++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.|++..+.|
T Consensus 2 s~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 2 SSGSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp CCCSSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCcCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45566667889999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cceeeecccCCCcc
Q 012896 93 KPIRVMYSHRDPSL 106 (454)
Q Consensus 93 ~~i~v~~~~~~~~~ 106 (454)
+.|+|.++......
T Consensus 82 ~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 82 RTIRVNLAKPMRIK 95 (102)
T ss_dssp EEEEEEECCCCCCC
T ss_pred cEEEEEeCCCCCCC
Confidence 99999999876443
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=132.58 Aligned_cols=93 Identities=19% Similarity=0.395 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+.+......++++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+..|++..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 5 SSGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp CCCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 34455567889999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cceeeecccCCCc
Q 012896 93 KPIRVMYSHRDPS 105 (454)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (454)
+.|+|.++.....
T Consensus 85 ~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 85 LILNVEWAKPSTN 97 (103)
T ss_dssp EECEEEESSCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987644
No 61
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=5.8e-19 Score=143.92 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=110.4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-CCcCCCCcceeeecccCC--------------CccccCCCcceeeecCCcccCh
Q 012896 61 TRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRD--------------PSLRKSGAGNIFIKNLDKAIDH 125 (454)
Q Consensus 61 ~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~v~~~~~~--------------~~~~~~~~~~l~v~nlp~~~~~ 125 (454)
....+|+++|+|.+.++|++|+..+ |+..++| .+.+.++... ........++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3456899999999999999999999 9999999 9999887641 1223345689999999999999
Q ss_pred HHHhhhhcccCceeEEEEeeCCCCCeeeEEEEEecCHHHHHHHHHHhcCceeCCceeEEeccccc
Q 012896 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 126 ~~l~~~f~~~g~v~~~~~~~~~~~~~~g~a~V~f~~~~~A~~a~~~l~~~~~~~~~l~v~~~~~~ 190 (454)
++|+++|+.||.|.++.+..+ ++|||||+|.+.++|..|+..|++..+.|+.|.|.++.++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999876 5889999999999999999999999999999999887554
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=2.3e-18 Score=133.62 Aligned_cols=96 Identities=28% Similarity=0.543 Sum_probs=87.7
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
.+++.......+.++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++.|++..|
T Consensus 3 s~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 3 SGSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp SSCCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34455666778899999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CCcceeeecccCCCcc
Q 012896 91 NGKPIRVMYSHRDPSL 106 (454)
Q Consensus 91 ~g~~i~v~~~~~~~~~ 106 (454)
.|+.|+|.++......
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 83 GGRQIRTNWATRKPPA 98 (115)
T ss_dssp TTEECEEEESSCCCCC
T ss_pred CCEEEEEEEccCCCCC
Confidence 9999999999876543
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=133.28 Aligned_cols=83 Identities=20% Similarity=0.451 Sum_probs=78.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+++++|+++|++||.|.+|++..+.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=134.15 Aligned_cols=82 Identities=32% Similarity=0.566 Sum_probs=77.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+|+.+.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 65
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=131.29 Aligned_cols=91 Identities=31% Similarity=0.549 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
..++..+..+...++|||+|||+++++++|+++|++||+|..|++++++. ++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 4 GSSGMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp --------CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred CcCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34455666778899999999999999999999999999999999999875 88999999999999999999999999999
Q ss_pred CCcceeeecccC
Q 012896 91 NGKPIRVMYSHR 102 (454)
Q Consensus 91 ~g~~i~v~~~~~ 102 (454)
.|+.|+|.+++.
T Consensus 83 ~g~~l~V~~a~~ 94 (95)
T 2ywk_A 83 YGRPINVSGPSS 94 (95)
T ss_dssp TTEECEEECCCC
T ss_pred CCCEEEEEEcCC
Confidence 999999998764
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=130.27 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=82.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
...++++|||+|||+++++++|+++|++||+|..|.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cccCCCcc
Q 012896 99 YSHRDPSL 106 (454)
Q Consensus 99 ~~~~~~~~ 106 (454)
++......
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=131.43 Aligned_cols=95 Identities=21% Similarity=0.451 Sum_probs=86.8
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCcC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNFSNAQEAARALEML-NFTP 89 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~ 89 (454)
++...+.....+++|||+|||+++++++|+++|++||.|..|.++++ +.++.++|||||+|.+.++|.+|+..| ++..
T Consensus 4 ~s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 4 GSSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp CCCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred CCCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 34556667889999999999999999999999999999999999998 778899999999999999999999999 9999
Q ss_pred CCCcceeeecccCCCcc
Q 012896 90 LNGKPIRVMYSHRDPSL 106 (454)
Q Consensus 90 ~~g~~i~v~~~~~~~~~ 106 (454)
|.|+.|+|.++......
T Consensus 84 ~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 84 LYGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSSCBCEEEECCCCCCC
T ss_pred ECCCEEEEEeCCCCCCC
Confidence 99999999999876543
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=9.6e-19 Score=130.90 Aligned_cols=84 Identities=24% Similarity=0.399 Sum_probs=78.6
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
++++|||+|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999999986 78999999999999999999999999999999999999998
Q ss_pred chHHH
Q 012896 383 RKEDR 387 (454)
Q Consensus 383 ~~~~~ 387 (454)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76643
No 69
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=128.72 Aligned_cols=84 Identities=30% Similarity=0.540 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
..++++|||+|||+++++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCC
Q 012896 100 SHRD 103 (454)
Q Consensus 100 ~~~~ 103 (454)
+...
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8754
No 70
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=130.59 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=73.2
Q ss_pred HhhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCce--ecCcce
Q 012896 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM--VVSKPL 376 (454)
Q Consensus 299 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~--~~g~~l 376 (454)
.....++++|||+|||..+|+++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.|+|.. |.|++|
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 334557889999999999999999999999999999999864 8899999999999999999999875 789999
Q ss_pred EEEEccchH
Q 012896 377 YVALAQRKE 385 (454)
Q Consensus 377 ~v~~~~~~~ 385 (454)
+|.|++.++
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998653
No 71
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=2.3e-19 Score=132.41 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=71.3
Q ss_pred ceEEEecCCCcCCHHHHHhccccCC--CceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+|||+|||..+++++|+++|++|| .|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999986 89999999999999999999999999999999999999987
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 554
No 72
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=6.1e-19 Score=124.56 Aligned_cols=76 Identities=22% Similarity=0.394 Sum_probs=71.0
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.+..|+|+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.|||..+.|++|+|.+|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 456799999999999999999999999999999976 499999999999999999999999999999999999953
Q ss_pred h
Q 012896 384 K 384 (454)
Q Consensus 384 ~ 384 (454)
.
T Consensus 81 ~ 81 (89)
T 2wbr_A 81 N 81 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=129.43 Aligned_cols=90 Identities=19% Similarity=0.338 Sum_probs=82.8
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
........+.++|||+|||+++++++|+++|++||.|..++++.++ +++++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 8 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 8 VFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3445566788999999999999999999999999999999999987 888999999999999999999999999999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|.++....
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 99999987653
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=129.67 Aligned_cols=92 Identities=28% Similarity=0.535 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
++......+.++++|||+|||+++++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+..|++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 4 GSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CCCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 44455666778999999999999999999999999999999999987 7889999999999999999999999999999
Q ss_pred CcceeeecccCCCc
Q 012896 92 GKPIRVMYSHRDPS 105 (454)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (454)
|+.|+|.++.....
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 82 TKPLYVALAQRKEE 95 (103)
T ss_dssp SSBCEEEECSSCCC
T ss_pred CcEEEEEEeccccc
Confidence 99999999987644
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.6e-19 Score=133.97 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=77.3
Q ss_pred CceEEEecCCC------cCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecC-cce
Q 012896 305 GANLYIKNLDD------SIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPL 376 (454)
Q Consensus 305 ~~~l~v~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g-~~l 376 (454)
.++|||+|||. .+++++|+++|++||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 99999999999999999999999987 59999999999999999999999999999999 999
Q ss_pred EEEEccchHH
Q 012896 377 YVALAQRKED 386 (454)
Q Consensus 377 ~v~~~~~~~~ 386 (454)
+|.++.+.+.
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999986553
No 76
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=7.2e-19 Score=128.54 Aligned_cols=80 Identities=33% Similarity=0.520 Sum_probs=75.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+++++++ .+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45788999999999999999999999999999999888 48889999999999999999999999999999999999998
Q ss_pred c
Q 012896 382 Q 382 (454)
Q Consensus 382 ~ 382 (454)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-18 Score=127.31 Aligned_cols=86 Identities=37% Similarity=0.620 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
..++++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 012896 100 SHRDPS 105 (454)
Q Consensus 100 ~~~~~~ 105 (454)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987643
No 78
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=7.5e-19 Score=145.49 Aligned_cols=141 Identities=17% Similarity=0.317 Sum_probs=79.1
Q ss_pred EEeCChHHHHHHHHHHcCCCCC--CceEEEeccccccHHHHHHHH--HHHHhhHHHhhhcCCceEEEecCCCcCCHHHHH
Q 012896 248 VNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKH--QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323 (454)
Q Consensus 248 v~f~~~~~a~~a~~~l~~~~~~--g~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 323 (454)
.+|.+.+++..++..+++.... |+.....+............. .............+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5678888888888877776544 444444432211100000000 000011112223456789999999999999999
Q ss_pred hccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchHHHH
Q 012896 324 QLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388 (454)
Q Consensus 324 ~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~ 388 (454)
++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999985 89999999999999999999999999999999999999998766543
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=2.3e-19 Score=142.78 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=79.7
Q ss_pred EEEEEeCChHHHHHHHHHHcCCCCCCceEEEeccccccHHHHHHHHHHHHhhHHHhhhcCCceEEEecCCCcCCHHHHHh
Q 012896 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324 (454)
Q Consensus 245 ~afv~f~~~~~a~~a~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 324 (454)
+.|.+|.+...+..|+..+++....++.- ..+..++ ......++|||+|||..+++++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~------------------~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPP------------------PDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp ------------------------------CCSCCSC------------------SSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCC------------------CCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 57888888888899998888776555432 1222221 1223467899999999999999999
Q ss_pred ccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 325 LFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 325 ~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
+|++||.|..|+++.+. +++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++..
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999886 78999999999999999999999999999999999999997544
No 80
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=129.54 Aligned_cols=83 Identities=34% Similarity=0.617 Sum_probs=77.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|++.++. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356889999999999999999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7544
No 81
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=131.26 Aligned_cols=94 Identities=26% Similarity=0.383 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
.+++.......+.++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|++|+.. ++..|
T Consensus 4 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (105)
T 2dh8_A 4 GSSGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL 82 (105)
T ss_dssp SCCCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE
T ss_pred CCCCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE
Confidence 44555666788999999999999999999999999999999999999988999999999999999999999998 99999
Q ss_pred CCcceeeecccCCCc
Q 012896 91 NGKPIRVMYSHRDPS 105 (454)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (454)
.|+.|+|.++.....
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 83 DGRNIDPKPCTPRGM 97 (105)
T ss_dssp TTEEEBCCCSCCSSC
T ss_pred CCEEEEEEEccCCCC
Confidence 999999999886643
No 82
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.4e-18 Score=127.05 Aligned_cols=83 Identities=30% Similarity=0.492 Sum_probs=78.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
...++++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred ccc
Q 012896 99 YSH 101 (454)
Q Consensus 99 ~~~ 101 (454)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 864
No 83
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=132.52 Aligned_cols=83 Identities=66% Similarity=1.082 Sum_probs=78.2
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
..+.++|||+|||..+++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346788999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8654
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=131.36 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+|||..+|+++|+++|++||.|.+|+|+++..|+++|||||+|.+.++|.+|+. ++|..|+|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 3568999999999999999999999999999999999889999999999999999999997 999999999999999875
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
-.
T Consensus 89 ~~ 90 (103)
T 1s79_A 89 YF 90 (103)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 85
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=131.03 Aligned_cols=84 Identities=30% Similarity=0.478 Sum_probs=78.6
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3457889999999999999999999999999999999985 889999999999999999999999999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 97654
No 86
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=131.53 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=78.9
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456889999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred cchHH
Q 012896 382 QRKED 386 (454)
Q Consensus 382 ~~~~~ 386 (454)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 86553
No 87
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=1.3e-18 Score=132.76 Aligned_cols=84 Identities=32% Similarity=0.628 Sum_probs=78.9
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC---cceEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS---KPLYVA 379 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g---~~l~v~ 379 (454)
...++|||+|||..+++++|+++|++||.|.+|+|..+.++.++|||||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EccchHH
Q 012896 380 LAQRKED 386 (454)
Q Consensus 380 ~~~~~~~ 386 (454)
|++++..
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9986553
No 88
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=131.20 Aligned_cols=91 Identities=24% Similarity=0.336 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
....+....++++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..|++..+.|
T Consensus 13 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 13 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp --CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 34455556788999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cceeeecccCC
Q 012896 93 KPIRVMYSHRD 103 (454)
Q Consensus 93 ~~i~v~~~~~~ 103 (454)
+.|+|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (106)
T 1p27_B 93 QPISVDWCFVR 103 (106)
T ss_dssp SBCEEEESEES
T ss_pred cEEEEEeecCC
Confidence 99999998764
No 89
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=130.12 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=77.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.+|+++.+.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred c
Q 012896 383 R 383 (454)
Q Consensus 383 ~ 383 (454)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=128.46 Aligned_cols=83 Identities=14% Similarity=0.289 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--cCCCCcce
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNGKPI 95 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~i 95 (454)
+.+.++++|||+|||++++|++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++ ..+.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45677899999999999999999999999999999999875 57999999999999999998864 67899999
Q ss_pred eeecccCCCcc
Q 012896 96 RVMYSHRDPSL 106 (454)
Q Consensus 96 ~v~~~~~~~~~ 106 (454)
+|.++......
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876443
No 91
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-18 Score=130.76 Aligned_cols=92 Identities=18% Similarity=0.329 Sum_probs=84.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC------C
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN------F 87 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~------~ 87 (454)
...+....++++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+..|+ +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3455667789999999999999999999999999999999999998889999999999999999999999999 9
Q ss_pred cCCCCcceeeecccCCCc
Q 012896 88 TPLNGKPIRVMYSHRDPS 105 (454)
Q Consensus 88 ~~~~g~~i~v~~~~~~~~ 105 (454)
..+.|+.|+|.++.....
T Consensus 86 ~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp EESSSCEEEEECCCCCCC
T ss_pred cEEcCEEEEEEECCCCcc
Confidence 999999999999886643
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-19 Score=132.30 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=72.5
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceecCcceEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVA 379 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g--~~~~g~~l~v~ 379 (454)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.|++ ..|.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 446788999999999999999999999999999999886 89999999999999999998864 78999999999
Q ss_pred EccchH
Q 012896 380 LAQRKE 385 (454)
Q Consensus 380 ~~~~~~ 385 (454)
|++++.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 997654
No 93
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=128.87 Aligned_cols=80 Identities=23% Similarity=0.450 Sum_probs=75.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456789999999999999999999999999999999986 5889999999999999999999999999999999999998
Q ss_pred c
Q 012896 382 Q 382 (454)
Q Consensus 382 ~ 382 (454)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=133.54 Aligned_cols=83 Identities=29% Similarity=0.519 Sum_probs=78.6
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.+|.+..+.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+..
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 95
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.3e-18 Score=134.28 Aligned_cols=86 Identities=26% Similarity=0.364 Sum_probs=79.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
......++++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456778999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred eeeccc
Q 012896 96 RVMYSH 101 (454)
Q Consensus 96 ~v~~~~ 101 (454)
+|.+++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 998864
No 96
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=5.1e-18 Score=131.66 Aligned_cols=84 Identities=30% Similarity=0.552 Sum_probs=78.8
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.++|||+|||..+++++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457889999999999999999999999999999999985 899999999999999999999999999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=4.2e-18 Score=132.09 Aligned_cols=89 Identities=24% Similarity=0.355 Sum_probs=82.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
.....+.++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456779999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred eecccCCCc
Q 012896 97 VMYSHRDPS 105 (454)
Q Consensus 97 v~~~~~~~~ 105 (454)
|.++.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999887644
No 98
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=3.1e-18 Score=124.48 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=77.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccC
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 102 (454)
+.+|||+|||+++++++|+++|++||+|.++.+++++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred C
Q 012896 103 D 103 (454)
Q Consensus 103 ~ 103 (454)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 99
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=127.82 Aligned_cols=94 Identities=26% Similarity=0.408 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
.++...+......++|||+|||+++++++|+++|++||.|..|++++++. .++|||||+|.+.++|.+|+..|++..|
T Consensus 3 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 3 SGSSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp SCCCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34456667778899999999999999999999999999999999998754 3789999999999999999999999999
Q ss_pred CCcceeeecccCCCcc
Q 012896 91 NGKPIRVMYSHRDPSL 106 (454)
Q Consensus 91 ~g~~i~v~~~~~~~~~ 106 (454)
.|+.|+|.++......
T Consensus 81 ~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 81 EGRKIEVNNATARVMT 96 (103)
T ss_dssp TTEECEEEECCSSCCC
T ss_pred CCEEEEEEEcccCCCC
Confidence 9999999999876443
No 100
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=1.5e-18 Score=134.68 Aligned_cols=106 Identities=20% Similarity=0.374 Sum_probs=94.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.+..+++|||+|||+++++++|+++|++||.|..|.++++ +.++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3567899999999999999999999999999999999875 4458999999999999999999999999999999999
Q ss_pred cccCCCccccCCCcceeeecCCcccChHHHhhhhcccCc
Q 012896 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137 (454)
Q Consensus 99 ~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~ 137 (454)
++...... .+++...++++|.++|++||-
T Consensus 81 ~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 98764332 467888899999999999873
No 101
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=138.90 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCC--CceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..++|||+|||..+|+++|+++|++|| .|.+|+|+.+. +|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 99999999996 899999999999999999999999999999999999999
Q ss_pred ccchHHHH
Q 012896 381 AQRKEDRR 388 (454)
Q Consensus 381 ~~~~~~~~ 388 (454)
+.++....
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98766544
No 102
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=129.53 Aligned_cols=88 Identities=35% Similarity=0.587 Sum_probs=82.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
.+....++++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456678999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred eeecccCC
Q 012896 96 RVMYSHRD 103 (454)
Q Consensus 96 ~v~~~~~~ 103 (454)
+|.++.+.
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998764
No 103
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=129.04 Aligned_cols=87 Identities=29% Similarity=0.495 Sum_probs=81.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc-
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP- 94 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~-~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~- 94 (454)
+....++++|||+|||+++++++|+++|++||.|. ++++++++.++.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 34566789999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred ---eeeecccCC
Q 012896 95 ---IRVMYSHRD 103 (454)
Q Consensus 95 ---i~v~~~~~~ 103 (454)
|+|.++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 999998765
No 104
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=130.95 Aligned_cols=82 Identities=35% Similarity=0.648 Sum_probs=77.5
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEE-EEeeC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~-~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
+.++|||+|||..+++++|+++|++||.|.++ +++++ .++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56889999999999999999999999999999 99998 48899999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 105
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.5e-18 Score=128.58 Aligned_cols=84 Identities=26% Similarity=0.471 Sum_probs=79.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
++++|||+|||.++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCc
Q 012896 102 RDPS 105 (454)
Q Consensus 102 ~~~~ 105 (454)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7643
No 106
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=132.02 Aligned_cols=93 Identities=26% Similarity=0.377 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
.++...+..+...++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.+++ .|
T Consensus 5 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~ 83 (116)
T 2cqd_A 5 SSGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II 83 (116)
T ss_dssp CCCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE
T ss_pred CCCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC
Confidence 34445667788899999999999999999999999999999999999988899999999999999999999999998 89
Q ss_pred CCcceeeecccCCC
Q 012896 91 NGKPIRVMYSHRDP 104 (454)
Q Consensus 91 ~g~~i~v~~~~~~~ 104 (454)
.|+.|+|.++....
T Consensus 84 ~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 84 DGRKANVNLAYLGA 97 (116)
T ss_dssp TTEECEEEESTTTC
T ss_pred CCEEEEEEEcccCC
Confidence 99999999997653
No 107
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=4.9e-18 Score=129.69 Aligned_cols=92 Identities=20% Similarity=0.409 Sum_probs=84.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC---
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL--- 90 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--- 90 (454)
+..+..+.+.++|||+|||.++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 4 GSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CCCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 34455678889999999999999999999999999999999999988899999999999999999999999999887
Q ss_pred CCcceeeecccCCCc
Q 012896 91 NGKPIRVMYSHRDPS 105 (454)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (454)
.|+.|+|.++.....
T Consensus 84 ~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 84 MNRPIQVKPADSESR 98 (106)
T ss_dssp CSSCCEEEECCCCSC
T ss_pred CCceEEEEECCcccc
Confidence 899999999887644
No 108
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=127.93 Aligned_cols=86 Identities=23% Similarity=0.426 Sum_probs=80.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 87 (454)
.+..+.+.++|||+|||+++++++|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|++.|++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456788899999999999999999999999999999 99999988999999999999999999999999999
Q ss_pred cCCCCcceeeeccc
Q 012896 88 TPLNGKPIRVMYSH 101 (454)
Q Consensus 88 ~~~~g~~i~v~~~~ 101 (454)
..+.|+.|+|.+++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999998864
No 109
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=7e-18 Score=127.99 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
+....+....+.++|||+|||+++++++|+++|++|| |..|++++++.+++++|||||+|.+.++|++|+ .|++..+.
T Consensus 4 g~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 4 GSSGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp CCCCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 3445566677889999999999999999999999997 999999999988999999999999999999999 89999999
Q ss_pred CcceeeecccCCCc
Q 012896 92 GKPIRVMYSHRDPS 105 (454)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (454)
|+.|+|.++.....
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 82 DRSLRVDIAEGRKQ 95 (103)
T ss_dssp TEECEEEECCCCCC
T ss_pred CeEEEEEEecCCCC
Confidence 99999999887644
No 110
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=128.66 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=76.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 346789999999999999999999999999999999986 6889999999999999999999999999999999999998
Q ss_pred cc
Q 012896 382 QR 383 (454)
Q Consensus 382 ~~ 383 (454)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 111
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=128.56 Aligned_cols=81 Identities=22% Similarity=0.443 Sum_probs=76.2
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceE--------EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
....++|||+|||..+++++|+++|++||.|.+ ++++.+. +|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345788999999999999999999999999999 9999985 7999999999999999999999999999999
Q ss_pred CcceEEEEcc
Q 012896 373 SKPLYVALAQ 382 (454)
Q Consensus 373 g~~l~v~~~~ 382 (454)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 112
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=129.15 Aligned_cols=82 Identities=20% Similarity=0.423 Sum_probs=76.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++ |||..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456889999999999999999999999999999999986 78899999999999999999997 9999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8654
No 113
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=131.77 Aligned_cols=83 Identities=22% Similarity=0.439 Sum_probs=77.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||..+++++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 345789999999999999999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8654
No 114
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2.4e-18 Score=133.44 Aligned_cols=83 Identities=39% Similarity=0.611 Sum_probs=78.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356789999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7554
No 115
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.2e-18 Score=127.64 Aligned_cols=92 Identities=27% Similarity=0.460 Sum_probs=82.5
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
++..........++|||+|||+++++++|+++|++||.|..|++++++.. ++|||||+|.+.++|.+|+..|++..+.
T Consensus 4 g~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 4 GSSGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CSCCCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 44455667788999999999999999999999999999999999997543 6899999999999999999999999999
Q ss_pred CcceeeecccCCCc
Q 012896 92 GKPIRVMYSHRDPS 105 (454)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (454)
|+.|+|.++.....
T Consensus 82 g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 82 GKEVKVNWATTPSS 95 (103)
T ss_dssp TEEEEEEECCCTTC
T ss_pred CCeEEEEECCCCcc
Confidence 99999999987644
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=129.97 Aligned_cols=85 Identities=25% Similarity=0.482 Sum_probs=79.4
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.++|||+|||..+++++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4689999999999999999999999999999999885 788999999999999999999999999999999999999988
Q ss_pred hHHHHH
Q 012896 384 KEDRRA 389 (454)
Q Consensus 384 ~~~~~~ 389 (454)
...+..
T Consensus 88 ~~~~~~ 93 (104)
T 1p1t_A 88 EKNKEE 93 (104)
T ss_dssp TTHHHH
T ss_pred ccchhh
Confidence 776543
No 117
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.6e-17 Score=126.56 Aligned_cols=86 Identities=23% Similarity=0.338 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC---cce
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG---KPI 95 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~i 95 (454)
...++++|||+|||+++++++|+++|++||.|..|.+++++ ++.++|||||+|.+.++|.+|++.|++..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34678999999999999999999999999999999999987 68899999999999999999999999999998 999
Q ss_pred eeecccCCCc
Q 012896 96 RVMYSHRDPS 105 (454)
Q Consensus 96 ~v~~~~~~~~ 105 (454)
+|.++.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987644
No 118
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=131.04 Aligned_cols=83 Identities=31% Similarity=0.484 Sum_probs=77.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356789999999999999999999999999999999885 7889999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 119
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-18 Score=127.50 Aligned_cols=88 Identities=33% Similarity=0.472 Sum_probs=81.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC-CCCcc
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP-LNGKP 94 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~-~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~ 94 (454)
.....++++|||+|||+++++++|+++|++ ||.|.+|.+++++ ++.++|||||+|.+.++|.+|++.|++.. +.|+.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 455678899999999999999999999999 9999999999998 88999999999999999999999999999 99999
Q ss_pred eeeecccCCCc
Q 012896 95 IRVMYSHRDPS 105 (454)
Q Consensus 95 i~v~~~~~~~~ 105 (454)
|+|.++.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999876543
No 120
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=131.01 Aligned_cols=83 Identities=34% Similarity=0.606 Sum_probs=77.8
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.++|||+|||..+++++|+++|++||.|.+|+++++. +|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456889999999999999999999999999999999885 788999999999999999999999999999999999999
Q ss_pred ccch
Q 012896 381 AQRK 384 (454)
Q Consensus 381 ~~~~ 384 (454)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9765
No 121
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.4e-18 Score=128.20 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G--~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CCCc
Q 012896 102 RDPS 105 (454)
Q Consensus 102 ~~~~ 105 (454)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9e-18 Score=126.31 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--C
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--P 89 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~ 89 (454)
++........++++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|++. .
T Consensus 4 ~~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 4 GSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp SCCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 44556667788999999999999999999999999999999998763 579999999999999999988654 5
Q ss_pred CCCcceeeecccCCCc
Q 012896 90 LNGKPIRVMYSHRDPS 105 (454)
Q Consensus 90 ~~g~~i~v~~~~~~~~ 105 (454)
+.|++|+|.++.....
T Consensus 78 i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 78 IAGQQAFFNYSTSKRI 93 (104)
T ss_dssp SSSSBCEEEECSSSSC
T ss_pred ECCEEEEEEEccCccc
Confidence 8999999999986543
No 123
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=9.2e-18 Score=134.98 Aligned_cols=91 Identities=29% Similarity=0.402 Sum_probs=84.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
.....+...++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 34 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp CSSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 44556778899999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eeeecccCCCc
Q 012896 95 IRVMYSHRDPS 105 (454)
Q Consensus 95 i~v~~~~~~~~ 105 (454)
|+|.++.....
T Consensus 114 l~v~~a~~~~~ 124 (139)
T 1u6f_A 114 LKVALAASGHQ 124 (139)
T ss_dssp EEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987644
No 124
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=129.09 Aligned_cols=90 Identities=28% Similarity=0.393 Sum_probs=82.2
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+.+.......+++|||+|||+++++++|+++|++||.|..|+++.++ +++++|||||+|.+.++|++|+..|++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 5 SSGALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34455566778999999999999999999999999999999999986 58899999999999999999999999999999
Q ss_pred cceeeecccCC
Q 012896 93 KPIRVMYSHRD 103 (454)
Q Consensus 93 ~~i~v~~~~~~ 103 (454)
+.|+|.++...
T Consensus 84 ~~l~v~~a~~~ 94 (114)
T 2do0_A 84 RPMHVKMDERA 94 (114)
T ss_dssp EECEEEECSCC
T ss_pred CEEEEEEcccC
Confidence 99999998754
No 125
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=4.7e-18 Score=130.01 Aligned_cols=81 Identities=30% Similarity=0.497 Sum_probs=77.3
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
..+.++|||+|||..+++++|+++|++||.|.+|+++.+.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 012896 382 Q 382 (454)
Q Consensus 382 ~ 382 (454)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 126
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.7e-18 Score=130.23 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 19 NQFGTTSLYVGDLEA------NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~------~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
++..+++|||+|||+ ++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 2 ~~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 2 PLGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CSCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 345579999999999 99999999999999999999999999989999999999999999999999999999999
Q ss_pred -cceeeecccC
Q 012896 93 -KPIRVMYSHR 102 (454)
Q Consensus 93 -~~i~v~~~~~ 102 (454)
+.|+|.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999998764
No 127
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=2.2e-18 Score=132.55 Aligned_cols=83 Identities=20% Similarity=0.429 Sum_probs=78.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999999885 7899999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8654
No 128
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=130.72 Aligned_cols=83 Identities=29% Similarity=0.463 Sum_probs=78.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 456789999999999999999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 7654
No 129
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=130.23 Aligned_cols=83 Identities=31% Similarity=0.548 Sum_probs=77.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999886 7889999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7654
No 130
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-18 Score=127.86 Aligned_cols=92 Identities=26% Similarity=0.447 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
+...+....+.++|||+|||+++++++|+++|++|| |..|.++.++.+ ++++|||||+|.+.++|++|+ .|++..+.
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 5 SSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp CCCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 344555667889999999999999999999999999 999999999887 889999999999999999999 89999999
Q ss_pred CcceeeecccCCCcc
Q 012896 92 GKPIRVMYSHRDPSL 106 (454)
Q Consensus 92 g~~i~v~~~~~~~~~ 106 (454)
|+.|+|.++......
T Consensus 83 g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 83 NKRIRVDVADQAQDK 97 (104)
T ss_dssp TEECEEEECCCCCCC
T ss_pred CcEEEEEEccCCCCC
Confidence 999999998876443
No 131
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=127.88 Aligned_cols=85 Identities=29% Similarity=0.634 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v-~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
.++++|||+|||+++++++|+++|++||.|..+ ++++++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999988899999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 012896 100 SHRDPS 105 (454)
Q Consensus 100 ~~~~~~ 105 (454)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987644
No 132
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=127.97 Aligned_cols=83 Identities=29% Similarity=0.486 Sum_probs=76.7
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
....++|||+|||..+++++|+++|++||.|.+|+|..+..+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345688999999999999999999999999999999988655 8999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7544
No 133
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=129.27 Aligned_cols=76 Identities=25% Similarity=0.359 Sum_probs=70.2
Q ss_pred CCceEEEecCCC-cCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCc--eecCcceEEEE
Q 012896 304 QGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYVAL 380 (454)
Q Consensus 304 ~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~--~~~g~~l~v~~ 380 (454)
+.++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.||+. .|.|++|+|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 567899999999 9999999999999999999999876 689999999999999999999864 59999999999
Q ss_pred ccch
Q 012896 381 AQRK 384 (454)
Q Consensus 381 ~~~~ 384 (454)
++..
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9753
No 134
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=127.72 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.....++|||+|||+++|+++|+++|++||+|.+|.+++++. +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 456679999999999999999999999999999999999876 8999999999999999999999 89999999999998
Q ss_pred cccC
Q 012896 99 YSHR 102 (454)
Q Consensus 99 ~~~~ 102 (454)
+...
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 7654
No 135
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=127.08 Aligned_cols=85 Identities=24% Similarity=0.511 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
.++++|||+|||+++++++|+++|++||.|..|.+..++. ++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5679999999999999999999999999999999999876 5588999999999999999999999999999999999
Q ss_pred ecccCCCc
Q 012896 98 MYSHRDPS 105 (454)
Q Consensus 98 ~~~~~~~~ 105 (454)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987644
No 136
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=127.70 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=75.1
Q ss_pred cCCceEEEecCCCcCCHHHHH----hccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v 378 (454)
...++|||+|||..+++++|+ ++|++||.|.+|+++.+..+ +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356789999999999999999 99999999999999988765 889999999999999999999999999999999
Q ss_pred EEccchH
Q 012896 379 ALAQRKE 385 (454)
Q Consensus 379 ~~~~~~~ 385 (454)
.++++..
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997543
No 137
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=6.3e-18 Score=123.97 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=76.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
.+..+.+.++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|++ +++..+.|+.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 45567889999999999999999999999999999999999998889999999999999999999997 57788999999
Q ss_pred eeecc
Q 012896 96 RVMYS 100 (454)
Q Consensus 96 ~v~~~ 100 (454)
+|.++
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99764
No 138
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=126.92 Aligned_cols=88 Identities=14% Similarity=0.262 Sum_probs=78.7
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
++....+...++|||+|||+++++++|+++|++||.| .|+++.++ +++++|||||+|.+.++|++|++ +++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 6 SGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp CCSSCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 3345567788999999999999999999999999965 99999997 89999999999999999999995 799999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|..+....
T Consensus 83 ~i~V~~~~~~~ 93 (102)
T 1wez_A 83 YVELFLNSTAG 93 (102)
T ss_dssp CCEEEEECCCC
T ss_pred EEEEEECCCCC
Confidence 99998877553
No 139
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.2e-18 Score=129.74 Aligned_cols=90 Identities=23% Similarity=0.392 Sum_probs=83.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 87 (454)
.+....++++|||+|||+++++++|+++|++||.|. .|+++.++.+++++|||||+|.+.++|++|++.||+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 345678899999999999999999999999999998 699999988899999999999999999999999999
Q ss_pred cCCCCcceeeecccCCCc
Q 012896 88 TPLNGKPIRVMYSHRDPS 105 (454)
Q Consensus 88 ~~~~g~~i~v~~~~~~~~ 105 (454)
..|.|+.|+|.++.....
T Consensus 88 ~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CEETTEECEEECSSCCCC
T ss_pred CccCCCEEEEEECCCCCC
Confidence 999999999999887644
No 140
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2.5e-18 Score=135.86 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~---v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
.........++|||+|||+++|+++|+++|++||. |..|++++++. ++++|||||+|.+.++|++|++ +++..+.
T Consensus 36 ~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 36 MLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 34455677899999999999999999999999999 89999999976 9999999999999999999999 9999999
Q ss_pred CcceeeecccC
Q 012896 92 GKPIRVMYSHR 102 (454)
Q Consensus 92 g~~i~v~~~~~ 102 (454)
|+.|+|.++..
T Consensus 114 gr~i~V~~a~~ 124 (136)
T 2hgl_A 114 HRYIEVFKSHR 124 (136)
T ss_dssp SSEEEEEECCH
T ss_pred CEEEEEEECCh
Confidence 99999987653
No 141
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.7e-17 Score=123.06 Aligned_cols=86 Identities=28% Similarity=0.412 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
....++++|||+|||+++++++|+++|++||.|..+.+.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999984 6788999999999999999999999999999999999
Q ss_pred ecccCCCc
Q 012896 98 MYSHRDPS 105 (454)
Q Consensus 98 ~~~~~~~~ 105 (454)
.++.....
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99887643
No 142
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=130.41 Aligned_cols=83 Identities=24% Similarity=0.389 Sum_probs=77.6
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|.+..+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356889999999999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+...
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7543
No 143
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=7.5e-18 Score=128.89 Aligned_cols=86 Identities=29% Similarity=0.486 Sum_probs=79.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
..+....++++|||+|||+++++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 21 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 21 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp ---CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 455667889999999999999999999999999999999999997 8899999999999999999999999999999999
Q ss_pred eeeeccc
Q 012896 95 IRVMYSH 101 (454)
Q Consensus 95 i~v~~~~ 101 (454)
|+|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9998875
No 144
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=128.14 Aligned_cols=83 Identities=37% Similarity=0.645 Sum_probs=76.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCC--C--CcceEEEEEeCCHHHHHHHHHHcCCceecCcceEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS--G--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~--~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v 378 (454)
.+.++|||+|||..+++++|+++|++||.|.+|++..+.. | .++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567899999999999999999999999999999998753 3 78999999999999999999999999999999999
Q ss_pred EEccchH
Q 012896 379 ALAQRKE 385 (454)
Q Consensus 379 ~~~~~~~ 385 (454)
.+++++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997544
No 145
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=126.22 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=71.5
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc--CCceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM--NGKMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l--~g~~~~g~~l~v~~ 380 (454)
.+.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|++.++|.+|++.| ++..+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 45678999999999999999999999999999999876 899999999999999999987 46789999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++.+.
T Consensus 88 a~~~~ 92 (101)
T 2cq1_A 88 SNHKE 92 (101)
T ss_dssp CSCSS
T ss_pred cCccc
Confidence 98654
No 146
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=129.04 Aligned_cols=85 Identities=25% Similarity=0.457 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
+..++++|||+|||+++++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred cccCCC
Q 012896 99 YSHRDP 104 (454)
Q Consensus 99 ~~~~~~ 104 (454)
+++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 988654
No 147
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=128.10 Aligned_cols=82 Identities=26% Similarity=0.459 Sum_probs=77.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCce-EEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcc----e
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT-SCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP----L 376 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~----l 376 (454)
...++|||+|||..+++++|+++|++||.|. +|+++++. +++++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567899999999999999999999999999 99999986 8899999999999999999999999999999999 9
Q ss_pred EEEEccch
Q 012896 377 YVALAQRK 384 (454)
Q Consensus 377 ~v~~~~~~ 384 (454)
+|.|+++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999754
No 148
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=130.11 Aligned_cols=84 Identities=23% Similarity=0.477 Sum_probs=78.2
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHc-CCceecCcceEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYV 378 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~g~afv~f~~~~~A~~a~~~l-~g~~~~g~~l~v 378 (454)
....++|||+|||..+++++|+++|++||.|.+|+++++. ++.++|||||+|.+.++|.+|+..| ||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 3456889999999999999999999999999999999883 8899999999999999999999999 999999999999
Q ss_pred EEccchH
Q 012896 379 ALAQRKE 385 (454)
Q Consensus 379 ~~~~~~~ 385 (454)
.|++++.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9997654
No 149
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=136.23 Aligned_cols=94 Identities=30% Similarity=0.515 Sum_probs=84.9
Q ss_pred cCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 012896 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 86 (454)
.+...++++......+.++|||+|||.++++++|+++|++||+|..+++++++.+++++|||||+|.+.++|++|++.|+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 47 DGGSGGSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp CCCSCSSCSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 34444555666778889999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CcCCCCcceeeecc
Q 012896 87 FTPLNGKPIRVMYS 100 (454)
Q Consensus 87 ~~~~~g~~i~v~~~ 100 (454)
+..+.|+.|+|.++
T Consensus 127 g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 127 ESELFGRTIRVNLA 140 (140)
T ss_dssp EEEETTEEEEEEC-
T ss_pred CCEECCEEEEEEeC
Confidence 99999999999874
No 150
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=4.4e-18 Score=132.11 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=76.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCC---ceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.+.+|+++|||||+|.+.++|.+|++ +||..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34678999999999999999999999999 899999999889999999999999999999998 99999999999999
Q ss_pred EccchH
Q 012896 380 LAQRKE 385 (454)
Q Consensus 380 ~~~~~~ 385 (454)
++..++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997554
No 151
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=130.41 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=72.5
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceecCcceEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVA 379 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g--~~~~g~~l~v~ 379 (454)
..+.++|||+|||+.+++++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.+++ ..|.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 345778999999999999999999999999999999986 89999999999999999999874 68999999999
Q ss_pred EccchH
Q 012896 380 LAQRKE 385 (454)
Q Consensus 380 ~~~~~~ 385 (454)
|++.+.
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 998655
No 152
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=1.8e-18 Score=129.23 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
....+..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 9 SSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ------CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 34455679999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred eecccC
Q 012896 97 VMYSHR 102 (454)
Q Consensus 97 v~~~~~ 102 (454)
|.++..
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 988753
No 153
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=4.7e-18 Score=126.16 Aligned_cols=82 Identities=26% Similarity=0.423 Sum_probs=76.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+++++|+++|++||.|.++++.++ +++++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45788999999999999999999999999999999984 78899999999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+..
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 154
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=6.3e-18 Score=129.97 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=83.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
...+....++++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 34455667889999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|.++....
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 99999987653
No 155
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=126.91 Aligned_cols=82 Identities=21% Similarity=0.406 Sum_probs=75.1
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCC-C-CcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS-G-ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~-~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
..++|||+|||..+++++|+++|++||.|.+++++.+.. + +++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999988863 3 37999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 156
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.5e-18 Score=128.22 Aligned_cols=82 Identities=30% Similarity=0.473 Sum_probs=76.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.+|+|+++..+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 45688999999999999999999999999999999998544 68999999999999999999999999999999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 654
No 157
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=131.09 Aligned_cols=83 Identities=34% Similarity=0.524 Sum_probs=78.3
Q ss_pred cCCceEEEecCCCcCCHHHHHhcccc-CCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCce-ecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSP-FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM-VVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~-~~g~~l~v~~ 380 (454)
.+.++|||+|||..+++++|+++|++ ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||.. |.|+.|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45678999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
+.++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97554
No 158
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=7.3e-18 Score=124.30 Aligned_cols=79 Identities=22% Similarity=0.435 Sum_probs=75.0
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.++|||+|||..+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999999999999999999999999986 8899999999999999999999 9999999999999999975
Q ss_pred h
Q 012896 384 K 384 (454)
Q Consensus 384 ~ 384 (454)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=131.10 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=79.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCc-eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSI-TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|+.. ||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 899999999999999999999999999999976 999999999999999
Q ss_pred cchHHHHH
Q 012896 382 QRKEDRRA 389 (454)
Q Consensus 382 ~~~~~~~~ 389 (454)
.++..+..
T Consensus 92 ~~~~~~~~ 99 (114)
T 2cpy_A 92 TLEDMREI 99 (114)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 87665443
No 160
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=124.33 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
..++++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35689999999999999999999999999999999999988899999999999999999999999999999999999876
Q ss_pred cc
Q 012896 100 SH 101 (454)
Q Consensus 100 ~~ 101 (454)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 161
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=127.86 Aligned_cols=88 Identities=18% Similarity=0.250 Sum_probs=80.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
........++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 8 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 33455677999999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred eeecccCC
Q 012896 96 RVMYSHRD 103 (454)
Q Consensus 96 ~v~~~~~~ 103 (454)
+|.++...
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99988753
No 162
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=4.1e-18 Score=132.83 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=75.7
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.++|||+|||..+++++|+++|++||.|.+|+++++. +|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456889999999999999999999999999999999885 789999999999999999999999999999999999999
Q ss_pred cc
Q 012896 381 AQ 382 (454)
Q Consensus 381 ~~ 382 (454)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 163
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=2.1e-18 Score=135.87 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=77.9
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999999986 7889999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7654
No 164
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=129.87 Aligned_cols=88 Identities=30% Similarity=0.515 Sum_probs=82.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
+..+...++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34556789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred eecccCCC
Q 012896 97 VMYSHRDP 104 (454)
Q Consensus 97 v~~~~~~~ 104 (454)
|.++....
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99988653
No 165
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=123.59 Aligned_cols=86 Identities=16% Similarity=0.296 Sum_probs=75.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CcCCCC
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNG 92 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g 92 (454)
.......++++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|+ +..+.|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 7 GDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455678899999999999999999999999999999998864 5799999999999999999874 567999
Q ss_pred cceeeecccCCCcc
Q 012896 93 KPIRVMYSHRDPSL 106 (454)
Q Consensus 93 ~~i~v~~~~~~~~~ 106 (454)
++|+|.++......
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 99999999876443
No 166
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=134.35 Aligned_cols=91 Identities=22% Similarity=0.403 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT-- 88 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~--v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-- 88 (454)
++..+.....+++|||+|||+++++++|+++|++||.|.. |++++++.+++++|||||+|.+. +|.+|+..|++.
T Consensus 13 ~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~ 91 (131)
T 2m2b_A 13 QGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHP 91 (131)
T ss_dssp CCCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCC
Confidence 3445555678899999999999999999999999999977 99999998999999999999999 999999999999
Q ss_pred --CCCCcceeeecccCCC
Q 012896 89 --PLNGKPIRVMYSHRDP 104 (454)
Q Consensus 89 --~~~g~~i~v~~~~~~~ 104 (454)
.+.|+.|+|.++....
T Consensus 92 ~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 92 PLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp SCCGGGCCCCCEECCCSC
T ss_pred CccCCCEEEEEEECCCCC
Confidence 9999999999987653
No 167
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=129.73 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=75.4
Q ss_pred cCCceEEEecCCCcCCHHHHH---hccccCCCceEEEEeeCC-C---CCcceEEEEEeCCHHHHHHHHHHcCCceecCcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLK---QLFSPFGSITSCKVMRDP-S---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~-~---~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~ 375 (454)
...++|||+|||..+++++|+ ++|++||.|.+|++.++. + ++++|||||+|.+.++|.+|++.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999 999999999999998875 2 356799999999999999999999999999999
Q ss_pred eEEEEccchH
Q 012896 376 LYVALAQRKE 385 (454)
Q Consensus 376 l~v~~~~~~~ 385 (454)
|+|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997554
No 168
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=127.65 Aligned_cols=92 Identities=24% Similarity=0.413 Sum_probs=81.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
++|||+|||+++++++|+++|++||+|..+.++++ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5689999999999999999999999999999999998765
Q ss_pred Cccc--------cCCCcceeeecCC
Q 012896 104 PSLR--------KSGAGNIFIKNLD 120 (454)
Q Consensus 104 ~~~~--------~~~~~~l~v~nlp 120 (454)
.... .....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4221 1225689999986
No 169
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-18 Score=129.40 Aligned_cols=83 Identities=29% Similarity=0.468 Sum_probs=76.6
Q ss_pred hhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
.....++|||+|||..+++++|+++|++||.|.+|++..+.. .++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred ccch
Q 012896 381 AQRK 384 (454)
Q Consensus 381 ~~~~ 384 (454)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 170
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=3.6e-18 Score=125.96 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
...++|||+|||+++++++|+++|++||.|..+.+..++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999 89999999999999998
Q ss_pred cCC
Q 012896 101 HRD 103 (454)
Q Consensus 101 ~~~ 103 (454)
+..
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 171
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=125.19 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~-v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
.........++|||+|||+++++++|+++|++||.|.. |.++.+ .+++++|||||+|.+.++|++|+.. ++..+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp CCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 34455677899999999999999999999999999987 888887 7889999999999999999999997 99999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|..+....
T Consensus 85 ~i~v~~~~~~~ 95 (104)
T 1wg5_A 85 YIEIFKSSRAE 95 (104)
T ss_dssp CCEEEEECTTT
T ss_pred EEEEEECCHHH
Confidence 99998877553
No 172
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=123.41 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=76.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|+.| .|.+|+++++.+|+++|||||+|.+.++|.+|+. |||..|.|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356789999999999999999999999 9999999999899999999999999999999999 99999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 173
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=6.7e-18 Score=133.37 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=77.0
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCC---ceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..++|||+|||+.+|+++|+++|++||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +||..|.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4678999999999999999999999999 899999999889999999999999999999998 999999999999999
Q ss_pred ccchHH
Q 012896 381 AQRKED 386 (454)
Q Consensus 381 ~~~~~~ 386 (454)
+.+++.
T Consensus 122 a~~~e~ 127 (136)
T 2hgl_A 122 SHRTEM 127 (136)
T ss_dssp CCHHHH
T ss_pred CChHHH
Confidence 976553
No 174
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.3e-17 Score=122.30 Aligned_cols=79 Identities=23% Similarity=0.486 Sum_probs=73.3
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.++|||+|||..+++++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|+ .+++..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999999986 6999999999999999999999 5588899999999987
Q ss_pred c
Q 012896 381 A 381 (454)
Q Consensus 381 ~ 381 (454)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 175
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=4.4e-18 Score=135.33 Aligned_cols=91 Identities=26% Similarity=0.430 Sum_probs=84.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
..+....++++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|+..|++..+.|+.
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 44555677889999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eeeecccCCCc
Q 012896 95 IRVMYSHRDPS 105 (454)
Q Consensus 95 i~v~~~~~~~~ 105 (454)
|+|.+++....
T Consensus 119 l~V~~a~~~~~ 129 (135)
T 2lea_A 119 LRVQMARYGRP 129 (135)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987644
No 176
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=126.59 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=75.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++|| |.+|+++.+. +++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568899999999999999999999997 9999999987 6899999999999999999999 99999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7544
No 177
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.3e-18 Score=127.05 Aligned_cols=82 Identities=17% Similarity=0.348 Sum_probs=75.5
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||..+++++|+++|++||.|..+.++.+. +|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 346789999999999999999999999999988877764 7899999999999999999999999999999999999998
Q ss_pred cch
Q 012896 382 QRK 384 (454)
Q Consensus 382 ~~~ 384 (454)
+..
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 743
No 178
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=5.2e-18 Score=129.53 Aligned_cols=83 Identities=25% Similarity=0.544 Sum_probs=77.4
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCcee---cCcceEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV---VSKPLYV 378 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~---~g~~l~v 378 (454)
...++|||+|||..+++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.|||..+ .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 456789999999999999999999999999999999986 689999999999999999999999999988 8999999
Q ss_pred EEccchH
Q 012896 379 ALAQRKE 385 (454)
Q Consensus 379 ~~~~~~~ 385 (454)
.+++++.
T Consensus 91 ~~a~~~~ 97 (106)
T 2dgp_A 91 KPADSES 97 (106)
T ss_dssp EECCCCS
T ss_pred EECCccc
Confidence 9997654
No 179
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=5.3e-18 Score=126.73 Aligned_cols=81 Identities=16% Similarity=0.329 Sum_probs=73.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
+..++|||+|||..+++++|+++|++||.|..+.++.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346889999999999999999999999999988887765 7889999999999999999999999999999999999988
Q ss_pred cc
Q 012896 382 QR 383 (454)
Q Consensus 382 ~~ 383 (454)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 180
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7e-18 Score=130.07 Aligned_cols=83 Identities=28% Similarity=0.506 Sum_probs=77.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcC------CceecCcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMN------GKMVVSKP 375 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~------g~~~~g~~ 375 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|+..|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356789999999999999999999999999999999986 68899999999999999999999999 99999999
Q ss_pred eEEEEccchH
Q 012896 376 LYVALAQRKE 385 (454)
Q Consensus 376 l~v~~~~~~~ 385 (454)
|+|.|+.++.
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999997654
No 181
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=126.12 Aligned_cols=86 Identities=14% Similarity=0.282 Sum_probs=76.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--cCCCC
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNG 92 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g 92 (454)
.......++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++ ..+.|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 33445678899999999999999999999999999999999875 57999999999999999998874 67999
Q ss_pred cceeeecccCCCcc
Q 012896 93 KPIRVMYSHRDPSL 106 (454)
Q Consensus 93 ~~i~v~~~~~~~~~ 106 (454)
++|+|.++......
T Consensus 97 r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 QPIYIQFSNHKELK 110 (119)
T ss_dssp BCCEEEECSSSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999999876544
No 182
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9.9e-18 Score=118.37 Aligned_cols=75 Identities=24% Similarity=0.300 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
..+..|+|+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999865 5789999999999999999999999999999999877
Q ss_pred c
Q 012896 101 H 101 (454)
Q Consensus 101 ~ 101 (454)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.6e-18 Score=120.88 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=70.5
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
+|||+|||..+++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|.+|++ +||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999986 78999999999999999999996 9999999999999875
No 184
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-17 Score=123.85 Aligned_cols=91 Identities=24% Similarity=0.398 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+........+.++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+. ++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 5 SSGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp CSSCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred CCCCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 33455566788999999999999999999999999999999999998889999999999999999999999 4678999
Q ss_pred cceeeecccCCCc
Q 012896 93 KPIRVMYSHRDPS 105 (454)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (454)
+.|+|.++.....
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 9999999887644
No 185
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=128.76 Aligned_cols=82 Identities=28% Similarity=0.417 Sum_probs=76.3
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
....++|||+|||..+++++|+++|++||.|.+|+|+++. +++++|||||+|.+.++|.+|++.+++ .|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 3456889999999999999999999999999999999986 789999999999999999999999998 89999999999
Q ss_pred ccch
Q 012896 381 AQRK 384 (454)
Q Consensus 381 ~~~~ 384 (454)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9644
No 186
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=127.08 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=70.9
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCc--eecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~--~~~g~~l~v~~ 380 (454)
.+.++|||+|||..+++++|+++|++||.|.+|.++++ ||||||+|++.++|.+|++.|++. .|.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45678999999999999999999999999999999875 899999999999999999988764 59999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++.+.
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 97544
No 187
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=129.08 Aligned_cols=81 Identities=20% Similarity=0.403 Sum_probs=74.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
...++|||+|||..+++++|+++|+.|| |.+|++..+. +|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4568899999999999999999999999 9999999986 7899999999999999999999 9999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 97653
No 188
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=122.68 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=72.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC--CCCc
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGK 93 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~ 93 (454)
+.....++++|||+|||.++++++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|++.|++.. +.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 3445578999999999999999999999999999999999853 5799999999999999999999876 7899
Q ss_pred ceeeecccCC
Q 012896 94 PIRVMYSHRD 103 (454)
Q Consensus 94 ~i~v~~~~~~ 103 (454)
+|+|.+++..
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999999765
No 189
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.1e-18 Score=126.41 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=74.1
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||+.+|+++|+++|++||. .+|+|+.+++++++|||||+|.+.++|.+|+ .+|+..|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 35678999999999999999999999994 5999999999999999999999999999999 579999999999999886
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 190
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-18 Score=125.48 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=74.9
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356789999999999999999999999999999999985 7899999999999999999999999999999999998776
Q ss_pred c
Q 012896 382 Q 382 (454)
Q Consensus 382 ~ 382 (454)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 191
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=130.94 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=75.6
Q ss_pred hcCCceEEEecCCCcCCHHHHH----hccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3456789999999999999876 6999999999988754 577899999999999999999999999999999999
Q ss_pred EEEccchHHHH
Q 012896 378 VALAQRKEDRR 388 (454)
Q Consensus 378 v~~~~~~~~~~ 388 (454)
|.|++.+....
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99998766543
No 192
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.1e-18 Score=130.23 Aligned_cols=81 Identities=21% Similarity=0.455 Sum_probs=76.0
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.++|||+|||..+++++|+++|+.||.|.+|+|+.+. +++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4689999999999999999999999999999999887 5889999999999999999999 9999999999999999976
Q ss_pred hHH
Q 012896 384 KED 386 (454)
Q Consensus 384 ~~~ 386 (454)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 554
No 193
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=130.80 Aligned_cols=82 Identities=29% Similarity=0.485 Sum_probs=77.6
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.+|++..+.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 194
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=128.16 Aligned_cols=81 Identities=35% Similarity=0.687 Sum_probs=76.4
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee--------cCcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--------VSKP 375 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~--------~g~~ 375 (454)
..++|||+|||..+++++|+++|++||.|.+|+|+.+.++.++|||||+|.+.++|.+|+..|||..| .+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 46789999999999999999999999999999999998999999999999999999999999999999 5888
Q ss_pred eEEEEccch
Q 012896 376 LYVALAQRK 384 (454)
Q Consensus 376 l~v~~~~~~ 384 (454)
|.|.|+++.
T Consensus 104 l~v~~a~p~ 112 (114)
T 1x5o_A 104 LLCKFSGPS 112 (114)
T ss_dssp BEEEECCCS
T ss_pred eeEEccCCC
Confidence 999999854
No 195
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=127.24 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=75.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-C-CCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~-~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
.+.++|||+|||..+++++|+++|++|| |.+|+|+.+. + ++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 9999999987 3 899999999999999999999 9999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98654
No 196
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.9e-17 Score=124.25 Aligned_cols=89 Identities=17% Similarity=0.321 Sum_probs=79.5
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
........+.++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.||+..+.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 344556678899999999999999999999999999999999653 45789999999999999999999999999999
Q ss_pred ceeeecccCCCc
Q 012896 94 PIRVMYSHRDPS 105 (454)
Q Consensus 94 ~i~v~~~~~~~~ 105 (454)
.|+|.+++....
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 999999987644
No 197
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=129.48 Aligned_cols=83 Identities=25% Similarity=0.458 Sum_probs=77.5
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCce--------EEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT--------SCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~-~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g 373 (454)
...++|||+|||..+++++|+++|++||.|. .|+|..+ .+++++|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999999 6999998 489999999999999999999999999999999
Q ss_pred cceEEEEccchH
Q 012896 374 KPLYVALAQRKE 385 (454)
Q Consensus 374 ~~l~v~~~~~~~ 385 (454)
+.|+|.+++++.
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999997654
No 198
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=4.4e-17 Score=128.09 Aligned_cols=89 Identities=26% Similarity=0.437 Sum_probs=82.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
+.......+++|||+|||+++++++|+++|++||.|..|.+..++ +++++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 27 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 27 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 334456788999999999999999999999999999999999987 8889999999999999999999999999999999
Q ss_pred eeeecccCCC
Q 012896 95 IRVMYSHRDP 104 (454)
Q Consensus 95 i~v~~~~~~~ 104 (454)
|+|.++....
T Consensus 106 l~V~~a~~~~ 115 (124)
T 2kt5_A 106 MDIQLVASQI 115 (124)
T ss_dssp EEEEEECCTT
T ss_pred EEEEEeCCCC
Confidence 9999988653
No 199
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=4.1e-18 Score=125.87 Aligned_cols=79 Identities=29% Similarity=0.496 Sum_probs=72.3
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccch
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 384 (454)
++|||+|||..+++++|+++|++||.|.++++.++. +|+++|||||+|.+.+ |.+|+..|||..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999999886 6899999999999999 99999999999999999999999765
Q ss_pred H
Q 012896 385 E 385 (454)
Q Consensus 385 ~ 385 (454)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 200
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=125.03 Aligned_cols=78 Identities=18% Similarity=0.406 Sum_probs=73.5
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
.+|||+|||+.+|+++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|.+|+ .+||..|.|+.|.|..+..+.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccc
Confidence 579999999999999999999999 899999999988999999999999999999999 799999999999999887543
No 201
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.9e-17 Score=130.64 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=83.5
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
...+....++++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 34455667789999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|.++....
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 202
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=124.83 Aligned_cols=86 Identities=23% Similarity=0.303 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+++.+......++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.||+..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 5 SSGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 3345556678999999999999999999999999999999999875 699999999999999999999999999
Q ss_pred -----cceeeecccCCCc
Q 012896 93 -----KPIRVMYSHRDPS 105 (454)
Q Consensus 93 -----~~i~v~~~~~~~~ 105 (454)
+.|+|.++.....
T Consensus 78 ~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TTSCEEEEEEEESSCCSC
T ss_pred CcCcceEEEEEeCCCCCC
Confidence 9999999887543
No 203
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=122.46 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
..+++|||+|||+++++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999876655 889999999999999999999999999999999998
Q ss_pred ccCC
Q 012896 100 SHRD 103 (454)
Q Consensus 100 ~~~~ 103 (454)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 204
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.7e-18 Score=127.60 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=70.4
Q ss_pred cCCceEEEecCCCc-CCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceecCcceEEE
Q 012896 303 FQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVA 379 (454)
Q Consensus 303 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g--~~~~g~~l~v~ 379 (454)
.+.++|||+|||+. +++++|+++|++||.|.+|+|.++ +|||||+|++.++|.+|++.|++ ..|.|++|+|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35778999999998 999999999999999999999764 89999999999999999998864 56999999999
Q ss_pred EccchH
Q 012896 380 LAQRKE 385 (454)
Q Consensus 380 ~~~~~~ 385 (454)
|++.+.
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 997544
No 205
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=129.29 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=77.5
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCc----eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSI----TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
.....+|||+|||+.+|+++|+++|++||.| ..|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|.|+.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3456789999999999999999999999875 689999998999999999999999999999976 99999999999
Q ss_pred EEEccchHHHH
Q 012896 378 VALAQRKEDRR 388 (454)
Q Consensus 378 v~~~~~~~~~~ 388 (454)
|..+.+++...
T Consensus 99 V~~a~~~e~~~ 109 (123)
T 2dha_A 99 LFRSTAAEVQQ 109 (123)
T ss_dssp CEEECHHHHHH
T ss_pred EEECCHHHHHH
Confidence 99997665443
No 206
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=123.17 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
....+.++|||+|||+++++++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|++|++.||+..+.|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 345567899999999999999999 99999999999999988654 78999999999999999999999999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|.++....
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999987653
No 207
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.2e-18 Score=120.31 Aligned_cols=75 Identities=32% Similarity=0.554 Sum_probs=71.5
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
++|||+|||..+++++|+++|++||.|.+++++++. +|+++|||||+|.+.++|.+|+..++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999986 68999999999999999999999999 9999999999986
No 208
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6e-17 Score=121.33 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=75.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC--C
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN--G 92 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g 92 (454)
.......++++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|++|++.||+..+. |
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 9 IGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 34456678899999999999999999999999999999998754 579999999999999999999999999 9
Q ss_pred cceeeecccCCC
Q 012896 93 KPIRVMYSHRDP 104 (454)
Q Consensus 93 ~~i~v~~~~~~~ 104 (454)
+.|+|.++...+
T Consensus 83 ~~l~V~~a~~~~ 94 (97)
T 1why_A 83 RRLRVDFAKSGP 94 (97)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999988753
No 209
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=1e-17 Score=119.05 Aligned_cols=75 Identities=27% Similarity=0.495 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 25 ~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
+|||+|||+++++++|+++|++||+|..+.+++++.++.++|||||+|.+.++|++|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 8999999999999864
No 210
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=121.18 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
...+...++|||+|||+++++++|+++|++| .|..|.++++ .+++++|||||+|.+.++|.+|+. |++..+.|+.|+
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 3445678999999999999999999999999 8999999998 788999999999999999999999 999999999999
Q ss_pred eecccCCC
Q 012896 97 VMYSHRDP 104 (454)
Q Consensus 97 v~~~~~~~ 104 (454)
|.++...+
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99987653
No 211
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=129.57 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=77.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCC---ceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
...++|||+|||+.+|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|.+|+. +||..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999998 899999999889999999999999999999998 99999999999999
Q ss_pred EccchHH
Q 012896 380 LAQRKED 386 (454)
Q Consensus 380 ~~~~~~~ 386 (454)
++.+++.
T Consensus 88 ~a~~~~~ 94 (107)
T 2lmi_A 88 EINNEDV 94 (107)
T ss_dssp ECCHHHH
T ss_pred ECCHHHH
Confidence 9986553
No 212
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.6e-17 Score=131.05 Aligned_cols=83 Identities=22% Similarity=0.439 Sum_probs=78.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||..+|+++|+++|++||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 356789999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
.++.
T Consensus 100 ~~~~ 103 (126)
T 3ex7_B 100 FVRG 103 (126)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 213
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=134.68 Aligned_cols=82 Identities=27% Similarity=0.410 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G--~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
...++|||+|||+++++++|+++|++|| .|.+|+++.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 012896 99 YSHR 102 (454)
Q Consensus 99 ~~~~ 102 (454)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8864
No 214
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=9.4e-18 Score=145.95 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=77.8
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCC--CceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..++|||+|||..+|+++|+++|++|| .|.+|+|+.+. +++++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 99999999996 899999999999999999999999999999999999999
Q ss_pred ccchHHH
Q 012896 381 AQRKEDR 387 (454)
Q Consensus 381 ~~~~~~~ 387 (454)
+++....
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 9876543
No 215
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=126.04 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=75.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||+.+|+++|+++|++||.|.+ |+|+.+.+|+++|||||+|.+.++|.+|+.. |+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35678999999999999999999999999987 8998888999999999999999999999987 999999999999998
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
..++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 6543
No 216
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=119.44 Aligned_cols=83 Identities=27% Similarity=0.471 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCcCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML-NFTPLN 91 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~ 91 (454)
+...+..+...++|||+|||+++++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..| ++..+.
T Consensus 2 s~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 2 SSGSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp CCCCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 4566777788999999999999999999999999999999999864 579999999999999999998 999999
Q ss_pred Ccceeeeccc
Q 012896 92 GKPIRVMYSH 101 (454)
Q Consensus 92 g~~i~v~~~~ 101 (454)
|+.|+|.+++
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999998864
No 217
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=123.17 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCCCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--CCCC
Q 012896 16 ANANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--PLNG 92 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g 92 (454)
......++++|||+|||+ ++++++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|++. .+.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 334456889999999999 9999999999999999999999865 369999999999999999998864 4899
Q ss_pred cceeeecccCCC
Q 012896 93 KPIRVMYSHRDP 104 (454)
Q Consensus 93 ~~i~v~~~~~~~ 104 (454)
++|+|.++....
T Consensus 82 r~l~V~~a~~~~ 93 (102)
T 1x4d_A 82 KPVRVHLSQKYK 93 (102)
T ss_dssp EECEEEEECCCT
T ss_pred cEEEEEECCCCC
Confidence 999999998653
No 218
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=134.63 Aligned_cols=83 Identities=35% Similarity=0.525 Sum_probs=77.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||..+++++|+++|+.||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 219
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=122.21 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=67.6
Q ss_pred ceEEEecCCCcC------CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCc-ceEE
Q 012896 306 ANLYIKNLDDSI------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYV 378 (454)
Q Consensus 306 ~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~-~l~v 378 (454)
++|||+|||..+ ++++|+++|++||.|.+|+++ ..+|+++|||||+|.+.++|.+|+..|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 579999999999 779999999999999999988 46888999999999999999999999999999999 8876
No 220
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=119.60 Aligned_cols=76 Identities=29% Similarity=0.486 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
++|||+|||+++++++|+++|++||+|..+.+.+++.+++++|||||+|.+.++|.+|++.++ ..+.|+.++|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998889999999999999999999999988 9999999999875
No 221
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=125.91 Aligned_cols=93 Identities=17% Similarity=0.357 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHh
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~---~~f~~~G~v~~v~~~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l 85 (454)
++..........++|||+|||+++++++|+ ++|++||+|..|.++++..++ +++|||||+|.+.++|++|++.|
T Consensus 4 ~s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~l 83 (111)
T 2cpi_A 4 GSSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCV 83 (111)
T ss_dssp CSSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHh
Confidence 344555667788999999999999999999 999999999999999887643 45699999999999999999999
Q ss_pred CCcCCCCcceeeecccCCC
Q 012896 86 NFTPLNGKPIRVMYSHRDP 104 (454)
Q Consensus 86 ~~~~~~g~~i~v~~~~~~~ 104 (454)
|+..+.|+.|+|.++....
T Consensus 84 ng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 84 NNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEETTEEEEEESCCCCS
T ss_pred CCCEECCEEEEEEeccccc
Confidence 9999999999999998764
No 222
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=127.09 Aligned_cols=82 Identities=30% Similarity=0.516 Sum_probs=74.1
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||..+++++|+++|++||.|.+|+++++. +|+++|||||+|.+.++|.+|+..+ |..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356789999999999999999999999999999999986 6999999999999999999999876 59999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
.++.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 223
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=117.84 Aligned_cols=81 Identities=26% Similarity=0.483 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
....+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 345678999999999999999999999999999999997 369999999999999999999999999999999
Q ss_pred ecccCCCcc
Q 012896 98 MYSHRDPSL 106 (454)
Q Consensus 98 ~~~~~~~~~ 106 (454)
.++......
T Consensus 75 ~~a~~~~~~ 83 (90)
T 2dnq_A 75 EASKNKSKA 83 (90)
T ss_dssp ECSSCCCCC
T ss_pred EECCCCCCC
Confidence 999876443
No 224
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=125.08 Aligned_cols=85 Identities=25% Similarity=0.449 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL-STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
+......++|||+|||+++++++|+++|++|| |.+|++++++ .+++++|||||+|.+.++|.+|+ .|++..+.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34567789999999999999999999999999 9999999987 58899999999999999999999 799999999999
Q ss_pred eeecccCC
Q 012896 96 RVMYSHRD 103 (454)
Q Consensus 96 ~v~~~~~~ 103 (454)
+|.++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998764
No 225
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=128.56 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=79.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v-~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
.+....+.+.++|||+|||+++++++|+++|+.||.| ..|+++.++ +++++|||||+|.+.++|++|++. ++..+.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 6 SGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCCCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCCCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 3444567788999999999999999999999999999 889999987 899999999999999999999997 9999999
Q ss_pred cceeeecccCC
Q 012896 93 KPIRVMYSHRD 103 (454)
Q Consensus 93 ~~i~v~~~~~~ 103 (454)
+.|+|.++...
T Consensus 84 r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 REAFVHVVTLE 94 (114)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 99999987654
No 226
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=124.43 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=73.3
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+++++|+++|++||.| +++.+.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 457899999999999999999999999976 66777788999999999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 227
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=126.93 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=74.2
Q ss_pred CCceEEEecCCCcC------CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCc-ce
Q 012896 304 QGANLYIKNLDDSI------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PL 376 (454)
Q Consensus 304 ~~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~-~l 376 (454)
..++|||+|||..+ |+++|+++|++||.|.+|+++ ..+|+++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 35789999999999 789999999999999999998 46889999999999999999999999999999998 99
Q ss_pred EEEEccch
Q 012896 377 YVALAQRK 384 (454)
Q Consensus 377 ~v~~~~~~ 384 (454)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 228
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=123.82 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=72.9
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CcCCCCc
Q 012896 17 NANQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGK 93 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~ 93 (454)
.....++++|||+|||++ +++++|+++|++||.|.+|++++ ++|||||+|.+.++|.+|++.|+ +..+.|+
T Consensus 19 ~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 19 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp CCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred cccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 445778999999999998 99999999999999999999974 35799999999999999999886 4569999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
+|+|.++....
T Consensus 93 ~l~V~~a~~~~ 103 (112)
T 1x4f_A 93 CVKVDLSEKYK 103 (112)
T ss_dssp CCEEEEECSCS
T ss_pred EEEEEECcccc
Confidence 99999987653
No 229
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=2.8e-17 Score=125.64 Aligned_cols=87 Identities=25% Similarity=0.377 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
...+.++++|||+|||+++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|.+|+..+ +..+.|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 345677899999999999999999999999999999999999888999999999999999999999976 4889999999
Q ss_pred eecccCCC
Q 012896 97 VMYSHRDP 104 (454)
Q Consensus 97 v~~~~~~~ 104 (454)
|.++....
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987653
No 230
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=128.32 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=75.1
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEE-EEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||+|||..+|+++|+++|+.||.|.++ .+..+.+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45789999999999999999999999999884 44555689999999999999999999998 99999999999999998
Q ss_pred chHHH
Q 012896 383 RKEDR 387 (454)
Q Consensus 383 ~~~~~ 387 (454)
.+...
T Consensus 103 ~~~~~ 107 (124)
T 1wel_A 103 KKGML 107 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 231
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=124.19 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CcCCCCcce
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVC-RDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKPI 95 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~-v~~v~~~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i 95 (454)
..+.++|||+|||+++++++|+++|++||. |.++.++ .++.+++++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457899999999999999999999999998 9999998 777778899999999999999999999996 589999999
Q ss_pred eeecccCCCc
Q 012896 96 RVMYSHRDPS 105 (454)
Q Consensus 96 ~v~~~~~~~~ 105 (454)
+|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987644
No 232
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=123.00 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=72.5
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec--CcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV--SKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~--g~~l~v~~ 380 (454)
.+.++|||+|||..+++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.|||..|. |+.|+|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35678999999999999999999999999999999765 789999999999999999999999999 99999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98654
No 233
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=123.62 Aligned_cols=78 Identities=27% Similarity=0.454 Sum_probs=72.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 45678999999999999999999999999999999865 8899999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 234
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=125.60 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=74.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|..|++..+ +.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 35678999999999999999999999999999999654 4578999999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+..
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 235
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-18 Score=134.36 Aligned_cols=82 Identities=21% Similarity=0.400 Sum_probs=76.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceE--EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCc----eecCcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK----MVVSKP 375 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~----~~~g~~ 375 (454)
...++|||+|||..+|+++|+++|++||.|.. |+|+++. +|+++|||||+|.+. +|.+|+..|||. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999997 899999999999999 999999999999 999999
Q ss_pred eEEEEccchH
Q 012896 376 LYVALAQRKE 385 (454)
Q Consensus 376 l~v~~~~~~~ 385 (454)
|+|.++++..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998653
No 236
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=119.73 Aligned_cols=75 Identities=27% Similarity=0.420 Sum_probs=70.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc-CCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l-~g~~~~g~~l~v~~~ 381 (454)
...++|||+|||..+++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..| +|..+.|+.|+|.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45678999999999999999999999999999999875 899999999999999999989 999999999999998
Q ss_pred c
Q 012896 382 Q 382 (454)
Q Consensus 382 ~ 382 (454)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 237
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=120.51 Aligned_cols=86 Identities=27% Similarity=0.515 Sum_probs=77.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
........+.++|||+|||+++++++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.|++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 6 SGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp SCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 344556678899999999999999999999999999999999854 57999999999999999999999999999
Q ss_pred ceeeecccCCCc
Q 012896 94 PIRVMYSHRDPS 105 (454)
Q Consensus 94 ~i~v~~~~~~~~ 105 (454)
.|+|.++.....
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpj_A 80 QLRVRFACHSAS 91 (99)
T ss_dssp CCEEEESSCCSC
T ss_pred eEEEEEcCCCCC
Confidence 999999987643
No 238
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=122.35 Aligned_cols=89 Identities=21% Similarity=0.390 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
..+.+..+.++++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+..|++..+.|
T Consensus 5 ~s~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 5 SSGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CCCCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34445567789999999999999999999999999977 55655 578899999999999999999999999999999
Q ss_pred cceeeecccCCCc
Q 012896 93 KPIRVMYSHRDPS 105 (454)
Q Consensus 93 ~~i~v~~~~~~~~ 105 (454)
+.|+|.++.....
T Consensus 81 ~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 81 RAIRLELQGPRGS 93 (101)
T ss_dssp EEEEEEECSSCCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987643
No 239
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.3e-17 Score=125.29 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=71.2
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||+|||+.+++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457899999999999999999999999 8999998643 368999999999999999999999999999999999997
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 240
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=125.85 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
+....++++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3455678999999999999999876 6999999999998853 56789999999999999999999999999999
Q ss_pred cceeeecccCCC
Q 012896 93 KPIRVMYSHRDP 104 (454)
Q Consensus 93 ~~i~v~~~~~~~ 104 (454)
++|+|.++....
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998653
No 241
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=9.5e-18 Score=125.87 Aligned_cols=85 Identities=34% Similarity=0.499 Sum_probs=76.5
Q ss_pred hcCCceEEEecCCCcCCHHHHH----hccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
..+.++|||+|||..+++++|+ ++|++||.|.+|++.+ +|.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3467899999999999999999 9999999999999874 466789999999999999999999999999999999
Q ss_pred EEEccchHHHH
Q 012896 378 VALAQRKEDRR 388 (454)
Q Consensus 378 v~~~~~~~~~~ 388 (454)
|.|++++....
T Consensus 83 v~~a~~~~~~~ 93 (97)
T 1nu4_A 83 IQYAKTDSDII 93 (97)
T ss_dssp EEECSSCCTHH
T ss_pred EEEccCCCccc
Confidence 99998766543
No 242
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=3.3e-17 Score=127.13 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~--~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
.+.........++|||+|||+++++++|+++|++| .|. +|+|+.++. ++++|||||+|.+.++|++|++. ++..+
T Consensus 32 ~g~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 32 RGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp ---CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 33444556778999999999999999999999999 566 999999876 99999999999999999999995 77999
Q ss_pred CCcceeeecccC
Q 012896 91 NGKPIRVMYSHR 102 (454)
Q Consensus 91 ~g~~i~v~~~~~ 102 (454)
.|+.|+|..+..
T Consensus 109 ~gR~I~V~~a~~ 120 (126)
T 2hgm_A 109 GHRYIEVFKSSQ 120 (126)
T ss_dssp TTBCCCCEEECH
T ss_pred CCEEEEEEECCH
Confidence 999999987653
No 243
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=127.64 Aligned_cols=83 Identities=25% Similarity=0.444 Sum_probs=77.1
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
....++|||+|||..+++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|+.. +|..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3456789999999999999999999999999999999985 789999999999999999999988 99999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 97554
No 244
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=4.4e-17 Score=133.67 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=78.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+|+++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999986 6889999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
++..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 245
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=127.94 Aligned_cols=83 Identities=31% Similarity=0.458 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
+...++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 355689999999999999999999999999999999999888999999999999999999999 8999999999999998
Q ss_pred ccCC
Q 012896 100 SHRD 103 (454)
Q Consensus 100 ~~~~ 103 (454)
+...
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 7643
No 246
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.2e-17 Score=128.99 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=74.6
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.++|||+|||..+++++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4689999999999999999999999999999999985 8899999999999999999999 8999999999999999974
Q ss_pred h
Q 012896 384 K 384 (454)
Q Consensus 384 ~ 384 (454)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 247
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=3.4e-17 Score=124.77 Aligned_cols=80 Identities=25% Similarity=0.583 Sum_probs=72.6
Q ss_pred hhhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 300 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
......++|||+|||..+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344567899999999999999999999999999999997 6799999999999999999999999999999999
Q ss_pred EccchHH
Q 012896 380 LAQRKED 386 (454)
Q Consensus 380 ~~~~~~~ 386 (454)
|++++..
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9987654
No 248
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=119.96 Aligned_cols=76 Identities=20% Similarity=0.423 Sum_probs=71.1
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 457899999999999999999999999999999997 5699999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 249
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=9e-17 Score=131.82 Aligned_cols=88 Identities=24% Similarity=0.409 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
....++++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467899999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred ecccCCCc
Q 012896 98 MYSHRDPS 105 (454)
Q Consensus 98 ~~~~~~~~ 105 (454)
.++.....
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986543
No 250
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=126.10 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=75.4
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCC-ceEEEEe-eCC-CCCcceEEEEEeCCHHHHHHHHHHcC--CceecCcceE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVM-RDP-SGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLY 377 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~-~~~~~g~afv~f~~~~~A~~a~~~l~--g~~~~g~~l~ 377 (454)
.+.++|||+|||..+++++|+++|++||. |.+|.++ .+. +|+++|||||+|.+.++|.+|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 554 67899999999999999999999996 5899999999
Q ss_pred EEEccchH
Q 012896 378 VALAQRKE 385 (454)
Q Consensus 378 v~~~~~~~ 385 (454)
|.|++++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998654
No 251
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=1.2e-17 Score=123.33 Aligned_cols=80 Identities=30% Similarity=0.565 Sum_probs=74.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecccCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 103 (454)
++|||+|||+++++++|+++|++||.|.++.+++++.++.++|||||+|.+.+ |.+|+..||+..+.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999998865
Q ss_pred C
Q 012896 104 P 104 (454)
Q Consensus 104 ~ 104 (454)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 252
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-16 Score=122.50 Aligned_cols=85 Identities=21% Similarity=0.427 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC------
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL------ 90 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~------ 90 (454)
...+.+.++|||+|||+++++++|+++|++||.|..+++++++ ++.++|||||+|.+.++|.+|+..||+..+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3455678999999999999999999999999999999999997 888999999999999999999999999999
Q ss_pred --CCcceeeecccC
Q 012896 91 --NGKPIRVMYSHR 102 (454)
Q Consensus 91 --~g~~i~v~~~~~ 102 (454)
.++++.|.|+.+
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 466777777764
No 253
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.6e-17 Score=124.52 Aligned_cols=90 Identities=28% Similarity=0.430 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
............++|||+|||.++++++|+++|++||.|..+.+++++ +.++|||||+|.+.++|++|++.|++..+.
T Consensus 18 ~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 18 GSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp ----CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334556667889999999999999999999999999999999999875 348899999999999999999999999999
Q ss_pred CcceeeecccCC
Q 012896 92 GKPIRVMYSHRD 103 (454)
Q Consensus 92 g~~i~v~~~~~~ 103 (454)
|+.|+|.++...
T Consensus 96 g~~l~V~~a~~~ 107 (109)
T 2err_A 96 GRKIEVNNATAR 107 (109)
T ss_dssp TEECEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999998754
No 254
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.7e-17 Score=123.55 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=71.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|+..|||..++|+.|+|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3568899999999999999999999999999999984 48999999999999999999999999999999999997
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3.5e-17 Score=127.02 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~---v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
......++|||+|||+++++++|+++|+.||. |..|+++.++. ++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34567899999999999999999999999998 89999999876 8899999999999999999999 8999999999
Q ss_pred eeeecccC
Q 012896 95 IRVMYSHR 102 (454)
Q Consensus 95 i~v~~~~~ 102 (454)
|+|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99987754
No 256
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=126.70 Aligned_cols=80 Identities=33% Similarity=0.501 Sum_probs=75.0
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.++|||+|||..+++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|+.. +|..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 689999999999999999999977 99999999999999976
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 257
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=4e-17 Score=117.70 Aligned_cols=73 Identities=14% Similarity=0.277 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc-ce
Q 012896 23 TTSLYVGDLEANV------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK-PI 95 (454)
Q Consensus 23 ~~~l~V~nLp~~~------~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~i 95 (454)
+++|||+|||+++ ++++|+++|++||+|.++.+.+ .+++++|||||+|.+.++|.+|+..||+..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7799999999999999999873 5788999999999999999999999999999999 88
Q ss_pred ee
Q 012896 96 RV 97 (454)
Q Consensus 96 ~v 97 (454)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 87
No 258
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.7e-17 Score=122.25 Aligned_cols=81 Identities=26% Similarity=0.410 Sum_probs=74.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+|+.+. +++++|||||+|.+.++|.+|+. ++..|+|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 356789999999999999999999999999999999986 69999999999999999999997 478999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
No 259
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.9e-17 Score=121.44 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=71.2
Q ss_pred hcCCceEEEecCCC-cCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.++|||+|||. .+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999998 99999999999999999999994 67999999999999999999999999999999999
Q ss_pred ccchHH
Q 012896 381 AQRKED 386 (454)
Q Consensus 381 ~~~~~~ 386 (454)
++....
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 976554
No 260
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=7.9e-17 Score=120.27 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=71.1
Q ss_pred hhcCCceEEEecCCC-cCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 301 DKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 301 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
...+.++|||+|||. .+++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999998 99999999999999999999983 7899999999999999999999999999999999
Q ss_pred Eccch
Q 012896 380 LAQRK 384 (454)
Q Consensus 380 ~~~~~ 384 (454)
+++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99754
No 261
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-17 Score=125.72 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
..+.+++|||+|||+++++++|+++|++||.|..|.+.+ ++|||||+|.+.++|++|+..||+..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 355678999999999999999999999999999998864 45799999999999999999999999999999999
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98765
No 262
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.3e-17 Score=123.31 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=71.4
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC-----cceEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-----KPLYV 378 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g-----~~l~v 378 (454)
..++|||+|||..+++++|+++|++||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4678999999999999999999999999999999876 799999999999999999999999999 99999
Q ss_pred EEccchH
Q 012896 379 ALAQRKE 385 (454)
Q Consensus 379 ~~~~~~~ 385 (454)
.+++++.
T Consensus 88 ~~a~~~~ 94 (108)
T 1x4c_A 88 KVDGPRS 94 (108)
T ss_dssp EESSCCS
T ss_pred EeCCCCC
Confidence 9998643
No 263
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-17 Score=125.33 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=70.9
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+|||..+++++|+++|++||.|.+|.+++ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 457899999999999999999999999999999876 378999999999999999999999999999999999975
Q ss_pred h
Q 012896 384 K 384 (454)
Q Consensus 384 ~ 384 (454)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 264
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=7.9e-17 Score=126.73 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
..++|||+|||+++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999988
Q ss_pred CCC
Q 012896 102 RDP 104 (454)
Q Consensus 102 ~~~ 104 (454)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 265
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-16 Score=111.85 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=68.1
Q ss_pred CCCCCcE-EEEcCCCCCCCHHH----HHHHHhcC-CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 19 NQFGTTS-LYVGDLEANVTDSQ----LYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 19 ~~~~~~~-l~V~nLp~~~~e~~----l~~~f~~~-G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
..+++.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|++..+.|
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 3445666 99999999999988 56899999 599999 22 799999999999999999999999999
Q ss_pred cceeeecccCCCcc
Q 012896 93 KPIRVMYSHRDPSL 106 (454)
Q Consensus 93 ~~i~v~~~~~~~~~ 106 (454)
++|+|.+++.....
T Consensus 74 r~i~v~~A~~~sd~ 87 (96)
T 2diu_A 74 NRIIVSFTPKNREL 87 (96)
T ss_dssp SCCEEESSCCSCCC
T ss_pred ceEEEEecCCCcce
Confidence 99999999877443
No 266
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.1e-17 Score=123.72 Aligned_cols=80 Identities=26% Similarity=0.507 Sum_probs=74.5
Q ss_pred hhcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 301 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
.....++|||+|||..+++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999999887 88999999999999999999999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97654
No 267
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=8.4e-17 Score=124.73 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=74.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+++++|+++|++||.|.+|+++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35678999999999999999999999999999999875 4558999999999999999999999999999999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+..
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 644
No 268
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=118.06 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
.....+++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456689999999999999999999999999996 666654 46789999999999999999999999999999999
Q ss_pred ecccCC
Q 012896 98 MYSHRD 103 (454)
Q Consensus 98 ~~~~~~ 103 (454)
.++...
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998765
No 269
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=6.3e-17 Score=130.43 Aligned_cols=79 Identities=33% Similarity=0.510 Sum_probs=74.3
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+++++|+++|++||.|.+++++++. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999999985 7899999999999999999999999999999999999986
No 270
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.2e-17 Score=122.74 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
.+.....++|+|+|||+++++++|+++|++| .|..|.|+.++. ++++|||||+|.+.++|++|+ .+++..+.|+.|.
T Consensus 10 ~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp CCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 3344557899999999999999999999999 889999999865 889999999999999999999 5899999999999
Q ss_pred eecccC
Q 012896 97 VMYSHR 102 (454)
Q Consensus 97 v~~~~~ 102 (454)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 976653
No 271
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.2e-17 Score=130.82 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
......++|||+|||+++++++|+++|++|| |..|+|++++. ++++|||||+|.+.++|++|+ .+++..+.|+.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3456788999999999999999999999999 56999999875 899999999999999999999 68999999999999
Q ss_pred ecccCCC
Q 012896 98 MYSHRDP 104 (454)
Q Consensus 98 ~~~~~~~ 104 (454)
..+....
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8877653
No 272
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=119.48 Aligned_cols=91 Identities=23% Similarity=0.428 Sum_probs=80.8
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
++........++++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|++|++.|++..|.
T Consensus 4 ~s~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 4 GSSGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp CCCTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3344556678899999999999999999999999873 6788888888999999999999999999999999999999
Q ss_pred CcceeeecccCCCc
Q 012896 92 GKPIRVMYSHRDPS 105 (454)
Q Consensus 92 g~~i~v~~~~~~~~ 105 (454)
|+.|+|.+++....
T Consensus 81 g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 81 GNKVTLDWAKPKGE 94 (102)
T ss_dssp TEECEEEECCCCCS
T ss_pred CeEEEEEEecCCCC
Confidence 99999999987643
No 273
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=121.37 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 19 NQFGTTSLYVGDLEANV------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~------~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
....+++|||+|||+++ ++++|+++|++||.|..|.+.+ .+++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34557899999999999 7899999999999999999983 578899999999999999999999999999999
Q ss_pred c-ceeeecccCC
Q 012896 93 K-PIRVMYSHRD 103 (454)
Q Consensus 93 ~-~i~v~~~~~~ 103 (454)
+ .|+|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999988754
No 274
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=117.35 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=75.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
.......++++|||+|||+++++++|+++|++||.|..+.+.++ ||||+|.+.++|.+|+..||+..+.|+.
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 34556778899999999999999999999999999999999743 9999999999999999999999999999
Q ss_pred eeeecccCCCc
Q 012896 95 IRVMYSHRDPS 105 (454)
Q Consensus 95 i~v~~~~~~~~ 105 (454)
|+|.++.....
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999987644
No 275
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=4.1e-17 Score=123.91 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G-~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
.+...++|||+|||+++++++|+++|++|| .|..+.+..+ +++|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 456678999999999999999999999999 8999988532 47789999999999999999999999999999999
Q ss_pred ecccCCCc
Q 012896 98 MYSHRDPS 105 (454)
Q Consensus 98 ~~~~~~~~ 105 (454)
.++...+.
T Consensus 100 ~~a~~~p~ 107 (111)
T 2jvr_A 100 ERDDNPPP 107 (111)
T ss_dssp EESCC---
T ss_pred EECCCCCC
Confidence 99876543
No 276
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.1e-17 Score=125.70 Aligned_cols=86 Identities=23% Similarity=0.435 Sum_probs=79.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.+...++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 345569999999999999999999999999999999999988899999999999999999999997 9999999999999
Q ss_pred cccCCCc
Q 012896 99 YSHRDPS 105 (454)
Q Consensus 99 ~~~~~~~ 105 (454)
++.....
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9887644
No 277
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=117.21 Aligned_cols=81 Identities=28% Similarity=0.488 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
...+.++++|||+|||+++++++|+++|++||.|..+.++++ ||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345678899999999999999999999999999999999743 999999999999999999999999999999
Q ss_pred eecccCCCc
Q 012896 97 VMYSHRDPS 105 (454)
Q Consensus 97 v~~~~~~~~ 105 (454)
|.++.....
T Consensus 75 v~~a~~~~~ 83 (90)
T 2dnp_A 75 VELSTKGQK 83 (90)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999987644
No 278
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.2e-17 Score=125.52 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=76.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
.......++++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 17 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred cccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34445567899999999999999999999999999843322222226778899999999999999999999999999999
Q ss_pred eeeecccCCCc
Q 012896 95 IRVMYSHRDPS 105 (454)
Q Consensus 95 i~v~~~~~~~~ 105 (454)
|+|.++.....
T Consensus 97 l~v~~a~~~~~ 107 (115)
T 2cpx_A 97 LVIEFGKNKKQ 107 (115)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEEccCCCC
Confidence 99999987644
No 279
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.3e-16 Score=131.93 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
.+....++++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44456778899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred eeecccCCCc
Q 012896 96 RVMYSHRDPS 105 (454)
Q Consensus 96 ~v~~~~~~~~ 105 (454)
.|.++.....
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999876543
No 280
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=118.14 Aligned_cols=76 Identities=20% Similarity=0.430 Sum_probs=70.8
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.+|++.++ ||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45688999999999999999999999999999999754 99999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 81 ~~~ 83 (92)
T 2dgt_A 81 SRL 83 (92)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 281
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=4.5e-17 Score=123.03 Aligned_cols=76 Identities=25% Similarity=0.501 Sum_probs=72.0
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
++|||+|||..+|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999887 68999999999999999999999999999999999998654
No 282
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-17 Score=124.45 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
....+++|||+|||+++++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++|++ |++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4457899999999999999999999999999888 666666778899999999999999999999 99999999999999
Q ss_pred cccCCC
Q 012896 99 YSHRDP 104 (454)
Q Consensus 99 ~~~~~~ 104 (454)
++....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 987653
No 283
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.6e-17 Score=120.68 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=71.1
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+|||..+++++|+++|++||.|. ++++.+ +++|||||+|.+.++|.+|+..|||..|.|+.|+|.++++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 467899999999999999999999999997 666654 5689999999999999999999999999999999999986
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 284
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=1.6e-16 Score=122.84 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=69.7
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHHcCCceecC--cceEEEEcc
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQ 382 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~-afv~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~~~ 382 (454)
..|||+||++.+|+++|+++|++||.|.+|++..+ .+|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 35789999999999999999999999999998765 3677 9999999999999999999999998 999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+..
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 654
No 285
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2.2e-17 Score=117.30 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=69.6
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
+|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++ +++..+.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999886 68899999999999999999996 5899999999999875
No 286
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8e-17 Score=126.45 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.....++|||+|||+++++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+|+. ||+..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567999999999999999999999999999886677777789999999999999999999999 99999999999998
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87643
No 287
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=7e-17 Score=123.12 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~---v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
......++|||+|||+++++++|+++|+.||. |..|.++.++. ++++|||||+|.+.++|++|+. +++..+.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 44567899999999999999999999999998 89999999876 8999999999999999999999 8999999999
Q ss_pred eeeecccC
Q 012896 95 IRVMYSHR 102 (454)
Q Consensus 95 i~v~~~~~ 102 (454)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99987764
No 288
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4.2e-17 Score=115.86 Aligned_cols=75 Identities=16% Similarity=0.426 Sum_probs=70.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 25 ~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
+|||+|||+++++++|+++|++||+|..+.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.++|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 689999999999999999999999999999999988899999999999999999999995 889999999999764
No 289
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.4e-17 Score=122.60 Aligned_cols=77 Identities=21% Similarity=0.414 Sum_probs=69.9
Q ss_pred cCCceEEE--ecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee-----cCcc
Q 012896 303 FQGANLYI--KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-----VSKP 375 (454)
Q Consensus 303 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~-----~g~~ 375 (454)
.++++||| +||+..+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|||..+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 45678999 669999999999999999999999998753 79999999999999999999999998 6899
Q ss_pred eEEEEccch
Q 012896 376 LYVALAQRK 384 (454)
Q Consensus 376 l~v~~~~~~ 384 (454)
|.|.|++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998643
No 290
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=120.02 Aligned_cols=81 Identities=26% Similarity=0.428 Sum_probs=73.3
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
..+.++|||+|||..+++++|+++|+.| ..++++.+. +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3467889999999999999999999977 377787775 788999999999999999999999999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 291
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=2.7e-16 Score=119.09 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=74.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
.+....++++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++|++.|++..+.|+.|
T Consensus 4 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 4 GSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 344456789999999999999999999999999999999874 499999999999999999999999999999
Q ss_pred eeecccCCCc
Q 012896 96 RVMYSHRDPS 105 (454)
Q Consensus 96 ~v~~~~~~~~ 105 (454)
+|.++.....
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9999986644
No 292
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=7.8e-18 Score=160.38 Aligned_cols=82 Identities=18% Similarity=0.400 Sum_probs=77.2
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
+.++|||+|||..+|+++|.++|++||.|..|.|+.+. +++++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45789999999999999999999999999999999985 88999999999999999999999999999999999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
...
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 543
No 293
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=120.32 Aligned_cols=81 Identities=26% Similarity=0.558 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
+...++|||+|||.++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 567899999999999999999999999999999999875 57999999999999999999999999999999999
Q ss_pred ccCCCcc
Q 012896 100 SHRDPSL 106 (454)
Q Consensus 100 ~~~~~~~ 106 (454)
+......
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876543
No 294
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=6.8e-17 Score=125.36 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=73.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCce--EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT--SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
...++|||+|||+.+|+++|+++|++| .|. +|+|+.+.+|+++|||||+|.+.++|.+|++ +++..|.|+.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 356789999999999999999999999 676 8999999889999999999999999999996 578999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87554
No 295
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=117.56 Aligned_cols=76 Identities=25% Similarity=0.484 Sum_probs=70.6
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.+|++.++ ||||+|.+.++|.+|++.|||..+.|+.|+|.+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 45678999999999999999999999999999999754 99999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+..
T Consensus 80 ~~~ 82 (90)
T 2dnp_A 80 KGQ 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 296
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=7e-17 Score=121.07 Aligned_cols=84 Identities=24% Similarity=0.520 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
.+..++++|||+|||+++++++|+ ++|++||.|..|.+.+ ++.++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 456788999999999999999999 9999999999999874 456789999999999999999999999999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|.++....
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999988764
No 297
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=8.3e-17 Score=124.68 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQV----VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v----~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
....++|||+|||+++|+++|+++|++||+| ..|.++.+ .+++++|||||+|.+.++|++|+.. ++..+.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3677999999999999999999999999875 68999998 4799999999999999999999996 9999999999
Q ss_pred eeeccc
Q 012896 96 RVMYSH 101 (454)
Q Consensus 96 ~v~~~~ 101 (454)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 887654
No 298
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=2.6e-17 Score=130.40 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=75.4
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||+.+|+++|+++|++|| |.+|+|+.+.+|+++|||||+|.+.++|.+|+ .+|+..|.|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3467899999999999999999999999 77999999988999999999999999999999 899999999999999987
Q ss_pred chHH
Q 012896 383 RKED 386 (454)
Q Consensus 383 ~~~~ 386 (454)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 299
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=1.8e-16 Score=131.97 Aligned_cols=83 Identities=29% Similarity=0.468 Sum_probs=78.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
...++|||+|||..+++++|+++|++||.|.+|.|..+.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 543
No 300
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.7e-16 Score=118.71 Aligned_cols=78 Identities=19% Similarity=0.421 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.+..+++|||+|||.++++++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999999999999999999999999999999973 46799999999999999999999999999999999
Q ss_pred cccC
Q 012896 99 YSHR 102 (454)
Q Consensus 99 ~~~~ 102 (454)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8864
No 301
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=3.1e-16 Score=119.45 Aligned_cols=83 Identities=25% Similarity=0.523 Sum_probs=72.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
......+..+++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3445567888999999999999999999999999999999997 47999999999999999999999999999
Q ss_pred ceeeecccCCC
Q 012896 94 PIRVMYSHRDP 104 (454)
Q Consensus 94 ~i~v~~~~~~~ 104 (454)
.|+|.++....
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 99999988653
No 302
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.6e-17 Score=124.45 Aligned_cols=83 Identities=28% Similarity=0.398 Sum_probs=72.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
.+.++|||+|||..+|+++|+++|++||.|..+.+..+ .+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35678999999999999999999999999954322222 27888999999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 103 ~~~~ 106 (115)
T 2cpx_A 103 KNKK 106 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8654
No 303
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.7e-16 Score=118.69 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=73.0
Q ss_pred ceEEEecC----CCcCCHHHHHhccccCCCceEEEEeeCC-CCCcceEEEEEeCC----HHH----HHHHHH--HcCCce
Q 012896 306 ANLYIKNL----DDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST----PEE----ASRALL--EMNGKM 370 (454)
Q Consensus 306 ~~l~v~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~afv~f~~----~~~----A~~a~~--~l~g~~ 370 (454)
++|+|+|| |+.+++++|+++|+.||.|.+|.++.|+ +|.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999998 89999999999996 333 899988 789999
Q ss_pred ecCcceEEEEccchHH
Q 012896 371 VVSKPLYVALAQRKED 386 (454)
Q Consensus 371 ~~g~~l~v~~~~~~~~ 386 (454)
|+|++|+|.+-+....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999976554
No 304
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=7.7e-16 Score=123.74 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC--cce
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG--KPI 95 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~i 95 (454)
+.+....+|||+|||+++++++|+++|++||.|..|+++.+. ++|||||+|.+.++|++|++.||+..|.| +.|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 344556778999999999999999999999999999997542 46899999999999999999999999965 999
Q ss_pred eeecccCC
Q 012896 96 RVMYSHRD 103 (454)
Q Consensus 96 ~v~~~~~~ 103 (454)
+|.|++..
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 99999865
No 305
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=8.2e-17 Score=120.42 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
+.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++++
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45789999999999999999999999988766 45678899999999999999999999999999999999999976
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
+.
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 306
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=6.5e-18 Score=131.15 Aligned_cols=84 Identities=24% Similarity=0.472 Sum_probs=77.7
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceE--------EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g 373 (454)
.+.++|||+|||..+++++|+++|++||.|.. |+++.+. +++++|||||+|.+.++|.+|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35678999999999999999999999999998 8898884 78899999999999999999999999999999
Q ss_pred cceEEEEccchHH
Q 012896 374 KPLYVALAQRKED 386 (454)
Q Consensus 374 ~~l~v~~~~~~~~ 386 (454)
+.|+|.+++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999986654
No 307
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.4e-16 Score=115.53 Aligned_cols=74 Identities=20% Similarity=0.338 Sum_probs=69.2
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+|||..+++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45789999999999999999999999 99999985 4689999999999999999999999999999999999864
No 308
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=7.6e-17 Score=122.05 Aligned_cols=81 Identities=23% Similarity=0.509 Sum_probs=75.5
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+|||..+++++|+++|++||.|.+|+++.+.+|+++|||||+|.+.++|.+|+. +|..++|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4578999999999999999999999999999999999999999999999999999999997 99999999999999976
Q ss_pred hHH
Q 012896 384 KED 386 (454)
Q Consensus 384 ~~~ 386 (454)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 553
No 309
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=5.2e-16 Score=115.81 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=71.3
Q ss_pred CCCCCCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 15 GANANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
......+++++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4445567899999999998 99999999999999999999983 47999999999999999999999999999
Q ss_pred ceeeecccCC
Q 012896 94 PIRVMYSHRD 103 (454)
Q Consensus 94 ~i~v~~~~~~ 103 (454)
.|+|.+++..
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999998754
No 310
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=2.5e-16 Score=126.60 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=70.4
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC--cceEEEEccc
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQR 383 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~~~~ 383 (454)
.+|||+||++.+|+++|+++|++||.|.+|+|..+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|.|+++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 468999999999999999999999999999997543 47899999999999999999999999965 9999999987
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 311
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=129.32 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=74.3
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEE------EEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcc
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC------KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~------~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~ 375 (454)
..+.++|||+|||..+|+++|+++|++||.|..+ .+....+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3467889999999999999999999999999874 2222246889999999999999999999999999999999
Q ss_pred eEEEEccchHH
Q 012896 376 LYVALAQRKED 386 (454)
Q Consensus 376 l~v~~~~~~~~ 386 (454)
|+|.|++....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 312
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=112.50 Aligned_cols=71 Identities=25% Similarity=0.406 Sum_probs=63.9
Q ss_pred ceEEEecCCCcCCHHH----HHhccccC-CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 306 ANLYIKNLDDSIDDEK----LKQLFSPF-GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~----l~~~f~~~-g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
+.|||+|||+.+++++ |+++|++| |.|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+|.|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999987 55899999 599999 22 8999999999999999999999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
|+.+.
T Consensus 81 A~~~s 85 (96)
T 2diu_A 81 TPKNR 85 (96)
T ss_dssp SCCSC
T ss_pred cCCCc
Confidence 98654
No 313
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=2.4e-16 Score=119.42 Aligned_cols=77 Identities=26% Similarity=0.510 Sum_probs=71.0
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|||..+|+++|+++|++||.|.+|++++ +||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 3567899999999999999999999999999999864 499999999999999999999999999999999998
Q ss_pred chHH
Q 012896 383 RKED 386 (454)
Q Consensus 383 ~~~~ 386 (454)
++..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6553
No 314
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.6e-16 Score=115.64 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 18 ANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
....++++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3467889999999999 99999999999999999999984 46999999999999999999999999999999
Q ss_pred eecccCCC
Q 012896 97 VMYSHRDP 104 (454)
Q Consensus 97 v~~~~~~~ 104 (454)
|.++....
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 99987653
No 315
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-17 Score=125.40 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=72.5
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||+|||..+++++|+++|++||.|.. .++.+ .+++++|||||+|.+.++|.+|++ |||..|.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4678999999999999999999999999988 44444 478899999999999999999998 99999999999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 316
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=9.1e-16 Score=117.72 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 19 NQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
....+++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3456689999999999 999999999999999999998 3579999999999999999999999999999999
Q ss_pred ecccCCCc
Q 012896 98 MYSHRDPS 105 (454)
Q Consensus 98 ~~~~~~~~ 105 (454)
.++.....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99875543
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=3.2e-16 Score=136.25 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G--~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
..++|||+|||+++++++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 012896 100 SHRD 103 (454)
Q Consensus 100 ~~~~ 103 (454)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 7643
No 318
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=117.93 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=69.2
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCC-ceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCC-ceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g-~~~~g~~l~v~~ 380 (454)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|+|+.|+|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35678999999999999999999999999 6666663 378999999999999999999999 999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97544
No 319
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=4.6e-16 Score=113.90 Aligned_cols=77 Identities=18% Similarity=0.411 Sum_probs=63.3
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee--cCcceEEE
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVA 379 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~--~g~~l~v~ 379 (454)
..+.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ ++|..+ .|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 345788999999999999999999999999999999886 78999999999999883 566554 59999999
Q ss_pred EccchHH
Q 012896 380 LAQRKED 386 (454)
Q Consensus 380 ~~~~~~~ 386 (454)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987654
No 320
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=5.9e-16 Score=119.43 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=67.5
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHHcCCceecC--cceEEEEccc
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQR 383 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~-afv~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~~~~ 383 (454)
.|||+||++.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|..|++.|||..|.| +.|+|.|+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4679999999999999999999999999999763 376 9999999999999999999999987 6999999986
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
+.
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 321
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=5.7e-16 Score=128.96 Aligned_cols=83 Identities=27% Similarity=0.447 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeec
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 99 (454)
...+++|||+|||+++++++|+++|++||.|..|.+..+. ++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999987 888999999999999999999999999999999999999
Q ss_pred ccCC
Q 012896 100 SHRD 103 (454)
Q Consensus 100 ~~~~ 103 (454)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8765
No 322
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=3.9e-16 Score=120.55 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=63.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
..+......++|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|++|++.||+..|.|+.
T Consensus 8 ~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 8 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 33444567899999999999999999999999999999999765 69999999999999999999999999999
Q ss_pred eee
Q 012896 95 IRV 97 (454)
Q Consensus 95 i~v 97 (454)
+++
T Consensus 81 ~~~ 83 (115)
T 3beg_B 81 GET 83 (115)
T ss_dssp SCC
T ss_pred eee
Confidence 443
No 323
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.3e-15 Score=114.61 Aligned_cols=83 Identities=14% Similarity=0.264 Sum_probs=73.3
Q ss_pred cCCceEEEecCCC-----cCCHHHHHhccccCCCceEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcc
Q 012896 303 FQGANLYIKNLDD-----SIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (454)
Q Consensus 303 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~ 375 (454)
.++++|+|.|+.. .-++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|+..|||+.+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678899999963 23689999999999999999999875 3678999999999999999999999999999999
Q ss_pred eEEEEccchH
Q 012896 376 LYVALAQRKE 385 (454)
Q Consensus 376 l~v~~~~~~~ 385 (454)
|+|.|+....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999997533
No 324
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=114.92 Aligned_cols=84 Identities=24% Similarity=0.254 Sum_probs=74.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEE-EEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~-~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
.......+++|||+|||+++++++|+++|++||.|..++ ++.++.++ .|||+|.+.++|.+|+..||+..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 8 SVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CCCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 334455689999999999999999999999999999994 77765443 4999999999999999999999999999
Q ss_pred eeeecccCC
Q 012896 95 IRVMYSHRD 103 (454)
Q Consensus 95 i~v~~~~~~ 103 (454)
|+|.++.+.
T Consensus 84 l~V~~a~~~ 92 (96)
T 2e44_A 84 LKVAYIPDE 92 (96)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCcc
Confidence 999998765
No 325
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=1.3e-15 Score=117.88 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCcCCCC--
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAARALEMLNFTPLNG-- 92 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g-- 92 (454)
....+..-.+|+|+||++.+|+++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|++|++.||+..|.|
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 34444555667799999999999999999999999999998742 467 9999999999999999999999988
Q ss_pred cceeeecccCCC
Q 012896 93 KPIRVMYSHRDP 104 (454)
Q Consensus 93 ~~i~v~~~~~~~ 104 (454)
+.|+|.|++...
T Consensus 96 ~~LrI~~ak~~~ 107 (130)
T 3zzy_A 96 CTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEECSCSS
T ss_pred cEEEEEecCCCc
Confidence 889999998653
No 326
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=3.1e-16 Score=120.35 Aligned_cols=74 Identities=26% Similarity=0.587 Sum_probs=69.4
Q ss_pred CCceEEEecCCCc-CCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||+|||.. +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.|||..|+|+.|+|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3578999999999 999999999999999999999 47899999999999999999999999999999999997
Q ss_pred ch
Q 012896 383 RK 384 (454)
Q Consensus 383 ~~ 384 (454)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-17 Score=128.70 Aligned_cols=87 Identities=24% Similarity=0.446 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 90 (454)
+..++++|||+|||+++++++|+++|++||.|.. |.++.++.++.++|||||+|.+.++|++|++.|++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999998 99999888899999999999999999999999999999
Q ss_pred CCcceeeecccCCCc
Q 012896 91 NGKPIRVMYSHRDPS 105 (454)
Q Consensus 91 ~g~~i~v~~~~~~~~ 105 (454)
.|+.|+|.++...+.
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999886643
No 328
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.9e-16 Score=115.36 Aligned_cols=81 Identities=30% Similarity=0.466 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-cCCCCcce
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF-TPLNGKPI 95 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~-v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~i 95 (454)
....+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||+ ..+.|+.|
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 34567799999999999999999999999999 6666553 357999999999999999999999 99999999
Q ss_pred eeecccCCCc
Q 012896 96 RVMYSHRDPS 105 (454)
Q Consensus 96 ~v~~~~~~~~ 105 (454)
+|.++.....
T Consensus 76 ~v~~a~~~~~ 85 (93)
T 2cqh_A 76 EVDYSVSKKL 85 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCccc
Confidence 9999987643
No 329
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.4e-16 Score=115.23 Aligned_cols=76 Identities=32% Similarity=0.490 Sum_probs=70.1
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccC--CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEE
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 380 (454)
.+.++|||+|||..+++++|+++|++| |.|.+|++. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999 899999874 56999999999999999999999999999999999
Q ss_pred ccchH
Q 012896 381 AQRKE 385 (454)
Q Consensus 381 ~~~~~ 385 (454)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpd_A 86 AKPVD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97544
No 330
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=111.98 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeee
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 98 (454)
.....++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++|+. |++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 45577899999999999999999999999999987 45555554 99999999999999999 99999999999999
Q ss_pred cccCC
Q 012896 99 YSHRD 103 (454)
Q Consensus 99 ~~~~~ 103 (454)
++...
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 87654
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=114.34 Aligned_cols=76 Identities=32% Similarity=0.510 Sum_probs=69.3
Q ss_pred cCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+.++|||+|+ .+++++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35678999996 899999999999999999999953 58999999999999999999999999999999999997
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
++.
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 332
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=2.6e-16 Score=119.08 Aligned_cols=83 Identities=23% Similarity=0.497 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
..+..+++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|++|+. ++..+.|+.|.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 445677999999999999999999999999999999999997 88999999999999999999999 888999999999
Q ss_pred ecccCC
Q 012896 98 MYSHRD 103 (454)
Q Consensus 98 ~~~~~~ 103 (454)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 887644
No 333
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.7e-15 Score=111.97 Aligned_cols=82 Identities=28% Similarity=0.437 Sum_probs=73.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~--G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
......++++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..||+..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34445678999999999999999999999999 999998775 35999999999999999999999999999
Q ss_pred ceeeecccCCCc
Q 012896 94 PIRVMYSHRDPS 105 (454)
Q Consensus 94 ~i~v~~~~~~~~ 105 (454)
.|+|.++.....
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5e-15 Score=110.71 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
.......++++|||+|| ++++++|+++|++||.|..|.+. +++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 7 GERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp SCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34445668899999996 99999999999999999999984 35679999999999999999999999999999
Q ss_pred eeeecccCCCcc
Q 012896 95 IRVMYSHRDPSL 106 (454)
Q Consensus 95 i~v~~~~~~~~~ 106 (454)
|+|.++......
T Consensus 79 l~v~~a~~~~~~ 90 (97)
T 1x5p_A 79 LKVNIARKQPML 90 (97)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876443
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=7.9e-16 Score=118.80 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=66.1
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcc-----eEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP-----LYV 378 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~-----l~v 378 (454)
..++|||+|||..+++++|+++|++||.|.+|.|+.+ |||||+|.+.++|.+|++.|||..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3578999999999999999999999999999999775 89999999999999999999999999999 666
Q ss_pred EEccc
Q 012896 379 ALAQR 383 (454)
Q Consensus 379 ~~~~~ 383 (454)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 66553
No 336
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-16 Score=115.75 Aligned_cols=84 Identities=19% Similarity=0.375 Sum_probs=74.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
....+.++++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34556788999999999999999999999999988666 2467789999999999999999999999999999999
Q ss_pred eeecccCCC
Q 012896 96 RVMYSHRDP 104 (454)
Q Consensus 96 ~v~~~~~~~ 104 (454)
+|.++....
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999987653
No 337
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=5.1e-15 Score=114.14 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCcCCCC--cceeeec
Q 012896 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAARALEMLNFTPLNG--KPIRVMY 99 (454)
Q Consensus 23 ~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~ 99 (454)
...|+|+|||+.+++++|+++|++||.|.+|+++.. .|| |||+|.+.++|..|++.||+..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 344679999999999999999999999999999752 276 9999999999999999999999987 6899999
Q ss_pred ccCC
Q 012896 100 SHRD 103 (454)
Q Consensus 100 ~~~~ 103 (454)
++..
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 8865
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.4e-15 Score=111.50 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
..+++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467999999999999999999999999 99999884 46789999999999999999999999999999999998
Q ss_pred cCC
Q 012896 101 HRD 103 (454)
Q Consensus 101 ~~~ 103 (454)
..+
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 766
No 339
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=114.37 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=70.8
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEE-EeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK-VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
..++|||+|||..+++++|+++|++||.|.+|+ ++.+.. .+.|||+|.+.++|.+|+..|||..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999995 777642 2349999999999999999999999999999999998
Q ss_pred chH
Q 012896 383 RKE 385 (454)
Q Consensus 383 ~~~ 385 (454)
+++
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 663
No 340
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=113.57 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=66.6
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+|||..+++++|+++|++||.|.+| +....+++ ||||+|.+.++|.+|+. |||..|+|+.|+|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 35689999999999999999999999999988 33333444 99999999999999998 999999999999988764
Q ss_pred h
Q 012896 384 K 384 (454)
Q Consensus 384 ~ 384 (454)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 341
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-15 Score=115.21 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=72.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCcC
Q 012896 24 TSLYVGDL----EANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN----AQE----AARALE--MLNFTP 89 (454)
Q Consensus 24 ~~l~V~nL----p~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~~~~ 89 (454)
.+|+|+|| |+.+++.+|+++|+.||.|.++.++.|+.++.++|||||+|.+ .++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 899988 789999
Q ss_pred CCCcceeeecccCC
Q 012896 90 LNGKPIRVMYSHRD 103 (454)
Q Consensus 90 ~~g~~i~v~~~~~~ 103 (454)
|.|+.|+|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999876654
No 342
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=114.07 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=70.2
Q ss_pred CCCCCCcEEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCC-----
Q 012896 18 ANQFGTTSLYV--GDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL----- 90 (454)
Q Consensus 18 ~~~~~~~~l~V--~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----- 90 (454)
....++++||| +|||+++++++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.||+..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456899999 77999999999999999999999998864 257999999999999999999999977
Q ss_pred CCcceeeecccCCC
Q 012896 91 NGKPIRVMYSHRDP 104 (454)
Q Consensus 91 ~g~~i~v~~~~~~~ 104 (454)
.|+++.|.++..-+
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 68889998876543
No 343
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=2.2e-15 Score=117.05 Aligned_cols=77 Identities=31% Similarity=0.500 Sum_probs=70.4
Q ss_pred hcCCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEc
Q 012896 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 381 (454)
..+.++|||+|+ .+++++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346789999996 699999999999999999999963 5899999999999999999999999999999999999
Q ss_pred cchH
Q 012896 382 QRKE 385 (454)
Q Consensus 382 ~~~~ 385 (454)
+++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8654
No 344
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=6.2e-16 Score=147.32 Aligned_cols=156 Identities=16% Similarity=0.306 Sum_probs=108.9
Q ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEec----C-CCCCcccEE--EEEeCCHHHHHHHHHHhCCcCCCC----------
Q 012896 30 DLEANVTDSQLYDLFNQMGQVVSVRVCRD----L-STRRSLGYG--YVNFSNAQEAARALEMLNFTPLNG---------- 92 (454)
Q Consensus 30 nLp~~~~e~~l~~~f~~~G~v~~v~~~~~----~-~~~~~~g~a--fV~f~~~~~A~~a~~~l~~~~~~g---------- 92 (454)
.||++ |..+|.++|+|..|..+.. + .+....|++ |+.|.+..++..++..++......
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45654 7889999999988744321 1 112222333 777877655443333221111110
Q ss_pred -----cceeeecccCCCccccCCCcceeeecCCcccChHHHhhhhcccCceeEEEEeeCC-CCCeeeEEEEEecCHHHHH
Q 012896 93 -----KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQ 166 (454)
Q Consensus 93 -----~~i~v~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~g~a~V~f~~~~~A~ 166 (454)
..+.+...............+|||+|||+.+++++|.++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.
T Consensus 79 ~~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 79 QQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred HHHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 0111111112222233445799999999999999999999999999999999884 7889999999999999999
Q ss_pred HHHHHhcCceeCCceeEEeccccc
Q 012896 167 KAIEKLNGMLLNDKQVYVGHFLRK 190 (454)
Q Consensus 167 ~a~~~l~~~~~~~~~l~v~~~~~~ 190 (454)
.|+..|++..|.|+.|.|.++...
T Consensus 159 ~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 159 SAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHHHcCCCEECCEEEEEEEeCCC
Confidence 999999999999999999887654
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=2.8e-15 Score=109.77 Aligned_cols=74 Identities=22% Similarity=0.509 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 012896 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~----G-------~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 87 (454)
...++++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .||+
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 34678999999999999999999999999 8 9999998754 579999999999999999 8999
Q ss_pred cCCCCcceeeec
Q 012896 88 TPLNGKPIRVMY 99 (454)
Q Consensus 88 ~~~~g~~i~v~~ 99 (454)
..+.|+.|+|..
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999864
No 346
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=2.3e-15 Score=129.65 Aligned_cols=80 Identities=23% Similarity=0.419 Sum_probs=71.4
Q ss_pred hcCCceEEEecCCCcC---------CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee-
Q 012896 302 KFQGANLYIKNLDDSI---------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV- 371 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~- 371 (454)
....++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|..|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457899999999998 79999999999999999999875 89999999999999999999999999
Q ss_pred -----------cCcceEEEEccchHH
Q 012896 372 -----------VSKPLYVALAQRKED 386 (454)
Q Consensus 372 -----------~g~~l~v~~~~~~~~ 386 (454)
.|+.|.|.||+....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986554
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=2.5e-15 Score=110.03 Aligned_cols=71 Identities=20% Similarity=0.468 Sum_probs=66.4
Q ss_pred CCceEEEecCCCcCCHHHHHhccccC----C-------CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPF----G-------SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
+.++|||+|||..+++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999 8 8999999866 899999999999999999 99999999
Q ss_pred CcceEEEE
Q 012896 373 SKPLYVAL 380 (454)
Q Consensus 373 g~~l~v~~ 380 (454)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999963
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=114.85 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
...+++|||+|||+++++++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|++|++.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45679999999999999999999999999998 888877766 6899999999999999999999884 36677766
Q ss_pred eecc
Q 012896 97 VMYS 100 (454)
Q Consensus 97 v~~~ 100 (454)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 349
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=5.6e-15 Score=124.93 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=72.6
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
.++|||+|||..+|+++|+++|++||.|.+|+++++.++.++|||||+|.+.++|.+|+..+ +..++|+.|+|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999988999999999999999999999655 4599999999999864
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=8.4e-15 Score=110.24 Aligned_cols=83 Identities=11% Similarity=0.142 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCcCCCCc
Q 012896 20 QFGTTSLYVGDLEA-----NVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (454)
Q Consensus 20 ~~~~~~l~V~nLp~-----~~~e~~l~~~f~~~G~v~~v~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 93 (454)
..++++|+|+|+.. +-++++|++.|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|+..||+..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46789999999973 2478999999999999999999998654 57899999999999999999999999999999
Q ss_pred ceeeecccC
Q 012896 94 PIRVMYSHR 102 (454)
Q Consensus 94 ~i~v~~~~~ 102 (454)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998864
No 351
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=9.2e-16 Score=123.78 Aligned_cols=82 Identities=26% Similarity=0.383 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
..++++|||+|||+++++++|+++|++||.|.. +.+. .+++++|||||+|.+.++|.+|+..||+..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 567799999999999999999999999998876 3333 35778999999999999999999999999999
Q ss_pred CcceeeecccCCC
Q 012896 92 GKPIRVMYSHRDP 104 (454)
Q Consensus 92 g~~i~v~~~~~~~ 104 (454)
|+.|+|.++....
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997653
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=6.1e-15 Score=111.10 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=72.0
Q ss_pred cCCceEEEecC--CCcCC--------HHHHHhccccCCCceEEEEeeCCC---CCcceEEEEEeCCHHHHHHHHHHcCCc
Q 012896 303 FQGANLYIKNL--DDSID--------DEKLKQLFSPFGSITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNGK 369 (454)
Q Consensus 303 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~---~~~~g~afv~f~~~~~A~~a~~~l~g~ 369 (454)
.+++.|.|.|+ |..+. +++|++.|++||.|.+|+|+++.. ++++|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35778999998 33443 379999999999999999998864 367999999999999999999999999
Q ss_pred eecCcceEEEEccchH
Q 012896 370 MVVSKPLYVALAQRKE 385 (454)
Q Consensus 370 ~~~g~~l~v~~~~~~~ 385 (454)
.+.||.|+|.|+....
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999987554
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-15 Score=110.60 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=65.0
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 383 (454)
..++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+.. +..+.|+.|+|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4678999999999999999999999999999999876 689999999999999754311 3455899999999876
Q ss_pred hH
Q 012896 384 KE 385 (454)
Q Consensus 384 ~~ 385 (454)
+.
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.6e-15 Score=113.51 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-C---CCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~---~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
..++|||+|||..+++++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467899999999999999999999999999 8887765 3 7899999999999999999999994 3677777776
Q ss_pred Ecc
Q 012896 380 LAQ 382 (454)
Q Consensus 380 ~~~ 382 (454)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 355
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=8.5e-15 Score=107.13 Aligned_cols=77 Identities=19% Similarity=0.372 Sum_probs=61.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC--CCCcce
Q 012896 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGKPI 95 (454)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i 95 (454)
..+.+..+|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|.+.++|++ +++.. +.|+.+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34677899999999999999999999999999999999864 67899999999999984 44444 458899
Q ss_pred eeecccCC
Q 012896 96 RVMYSHRD 103 (454)
Q Consensus 96 ~v~~~~~~ 103 (454)
.|.++.+.
T Consensus 77 ~v~~a~~k 84 (89)
T 3d2w_A 77 HISNAEPK 84 (89)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99887654
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=2.1e-14 Score=111.45 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=71.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
...+..+++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999996 79999999999999999999985 3568999999999999999999999999999999
Q ss_pred eecccCCCc
Q 012896 97 VMYSHRDPS 105 (454)
Q Consensus 97 v~~~~~~~~ 105 (454)
|.++.....
T Consensus 105 V~~a~~~~~ 113 (121)
T 2bz2_A 105 VNIARKQPM 113 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeCCCCC
Confidence 999987643
No 357
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.4e-15 Score=112.34 Aligned_cols=72 Identities=18% Similarity=0.439 Sum_probs=62.8
Q ss_pred EecCCCcCCHHHHHhcc------------ccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceE
Q 012896 310 IKNLDDSIDDEKLKQLF------------SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (454)
Q Consensus 310 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~ 377 (454)
+.|||..+++++|+++| ++||.|.+|+|+++.+++++|||||+|.+.++|.+|+..|||+.++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 44566666666665555 999999999999988888999999999999999999999999999999999
Q ss_pred EEEc
Q 012896 378 VALA 381 (454)
Q Consensus 378 v~~~ 381 (454)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=2.7e-14 Score=109.54 Aligned_cols=82 Identities=16% Similarity=0.315 Sum_probs=71.6
Q ss_pred cCCceEEEecCCC--cC---CHHHHHhccccCCCceEEEEeeCC-----CCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 303 FQGANLYIKNLDD--SI---DDEKLKQLFSPFGSITSCKVMRDP-----SGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 303 ~~~~~l~v~nl~~--~~---~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
.++++|+|.|+-. .+ .+++|++.|++||.|.+|+|+++. ++.++|++||+|.+.++|.+|+..|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3688999999942 23 358999999999999999999875 2467899999999999999999999999999
Q ss_pred CcceEEEEccch
Q 012896 373 SKPLYVALAQRK 384 (454)
Q Consensus 373 g~~l~v~~~~~~ 384 (454)
||.|+|.|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998754
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.5e-15 Score=107.61 Aligned_cols=78 Identities=19% Similarity=0.390 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
.++++|||+|||+++++++|+++|++||+|.+++++++ ++|||||+|.+.++|+++.. ....+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 46799999999999999999999999999999999764 57899999999999986533 234458999999988
Q ss_pred cCCCc
Q 012896 101 HRDPS 105 (454)
Q Consensus 101 ~~~~~ 105 (454)
.+...
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.4e-14 Score=107.91 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=68.6
Q ss_pred cCCceEEEecCCCcC-----------CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 012896 303 FQGANLYIKNLDDSI-----------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~-----------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 371 (454)
.++++|+|.||.... ++++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|+..|||..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 357789999994432 25899999999999999966 443 3799999999999999999999999999
Q ss_pred cCcceEEEEccchH
Q 012896 372 VSKPLYVALAQRKE 385 (454)
Q Consensus 372 ~g~~l~v~~~~~~~ 385 (454)
.|++|+|.|+.++.
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999997643
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=3.1e-14 Score=120.30 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeeccc
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 101 (454)
..++|||+|||+++++++|+++|++||+|..|++.++. ++.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999975 48899999999999999999998654 58999999998876
Q ss_pred CC
Q 012896 102 RD 103 (454)
Q Consensus 102 ~~ 103 (454)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=106.15 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 012896 13 GGGANANQFGTTSLYVGDLEANVT-----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81 (454)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~-----------e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a 81 (454)
+.+....+.++++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|
T Consensus 5 ~~~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~A 80 (112)
T 2dit_A 5 SSGGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYC 80 (112)
T ss_dssp CCSCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHH
T ss_pred ccCCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHH
Confidence 344555778899999999944332 5799999999999999966 443 3789999999999999999
Q ss_pred HHHhCCcCCCCcceeeecccCCCc
Q 012896 82 LEMLNFTPLNGKPIRVMYSHRDPS 105 (454)
Q Consensus 82 ~~~l~~~~~~g~~i~v~~~~~~~~ 105 (454)
+..||+..|.|+.|+|.++.....
T Consensus 81 i~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 81 IQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHcCCCEECCcEEEEEEeCCCCC
Confidence 999999999999999999876543
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=9.4e-14 Score=104.55 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=72.1
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 012896 21 FGTTSLYVGDL--EANVT--------DSQLYDLFNQMGQVVSVRVCRDLST--RRSLGYGYVNFSNAQEAARALEMLNFT 88 (454)
Q Consensus 21 ~~~~~l~V~nL--p~~~~--------e~~l~~~f~~~G~v~~v~~~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~~ 88 (454)
.+++.|.|.|+ |.++. +++|++.|++||+|.+|.|+++..+ ++++|+|||+|.+.++|.+|+..||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999998 44443 3689999999999999999987654 357899999999999999999999999
Q ss_pred CCCCcceeeecccCC
Q 012896 89 PLNGKPIRVMYSHRD 103 (454)
Q Consensus 89 ~~~g~~i~v~~~~~~ 103 (454)
.|.|+.|++.+....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987643
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=1.3e-13 Score=118.67 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC
Q 012896 19 NQFGTTSLYVGDLEANV---------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~---------~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 89 (454)
....+++|||+|||.++ +|++|+++|++||.|.+|+++. ++|||||+|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 46788999999999998 7999999999999999999985 35799999999999999999999999
Q ss_pred C------------CCcceeeecccCCC
Q 012896 90 L------------NGKPIRVMYSHRDP 104 (454)
Q Consensus 90 ~------------~g~~i~v~~~~~~~ 104 (454)
+ .|+.|.|.|++.++
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998764
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=4.1e-13 Score=102.93 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCC--C---CCHHHHHHHHhcCCCeEEEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 21 FGTTSLYVGDLEA--N---VTDSQLYDLFNQMGQVVSVRVCRDLS----TRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 21 ~~~~~l~V~nLp~--~---~~e~~l~~~f~~~G~v~~v~~~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
+++++|+|+|+-. + --+++|++.|++||+|.+|.|+++.. ++.++|++||+|.+.++|.+|+..||+..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999942 2 23689999999999999999999864 3467899999999999999999999999999
Q ss_pred CcceeeecccC
Q 012896 92 GKPIRVMYSHR 102 (454)
Q Consensus 92 g~~i~v~~~~~ 102 (454)
|+.|++.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999988764
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=1.1e-12 Score=99.78 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=68.0
Q ss_pred cCCceEEEecCCCcC----------CHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 012896 303 FQGANLYIKNLDDSI----------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (454)
Q Consensus 303 ~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 372 (454)
.++++|.|.|+=..- .++||++.|++||.|.+|.|.++. .+|+|||+|.+.++|.+|+..|||+.++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356789999984321 136899999999999999997653 4899999999999999999999999999
Q ss_pred CcceEEEEccchH
Q 012896 373 SKPLYVALAQRKE 385 (454)
Q Consensus 373 g~~l~v~~~~~~~ 385 (454)
|+.|+|.|+....
T Consensus 82 GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 82 GKMITAAYVPLPT 94 (114)
T ss_dssp TEECEEEEECHHH
T ss_pred CEEEEEEEEcHHH
Confidence 9999999997544
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=9.6e-13 Score=97.50 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=57.5
Q ss_pred CcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 315 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
..+++++|+++|++||.|.+|+|+. +++|||||+|.+.++|.+|+..+++ +.|++|+|.|++.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 4589999999999999999999983 5799999999999999999988655 689999999997543
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.4e-13 Score=103.49 Aligned_cols=73 Identities=29% Similarity=0.512 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 28 VGDLEANVTDSQLYDLF------------NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 28 V~nLp~~~~e~~l~~~f------------~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
+.|||+.+++++|+++| ++||+|.+|.++++.. ++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566667777776665 9999999999998754 7889999999999999999999999999999999
Q ss_pred eeeccc
Q 012896 96 RVMYSH 101 (454)
Q Consensus 96 ~v~~~~ 101 (454)
+|.++.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 998763
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-11 Score=91.09 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=65.7
Q ss_pred CCcEEEEcCCC-------CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcc
Q 012896 22 GTTSLYVGDLE-------ANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (454)
Q Consensus 22 ~~~~l~V~nLp-------~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 94 (454)
..++|.|.-.+ .++++++|+++|++||.|.+|.++ ++++|||||+|.+.++|.+|+..+ ..+.|++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCe
Confidence 36788888776 458999999999999999999997 357799999999999999999974 4468999
Q ss_pred eeeecccCCCc
Q 012896 95 IRVMYSHRDPS 105 (454)
Q Consensus 95 i~v~~~~~~~~ 105 (454)
|+|.|+...+.
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999886643
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=1.6e-12 Score=118.29 Aligned_cols=76 Identities=24% Similarity=0.466 Sum_probs=66.5
Q ss_pred hcCCceEEEec--CCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec---Cc--
Q 012896 302 KFQGANLYIKN--LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SK-- 374 (454)
Q Consensus 302 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~---g~-- 374 (454)
..++.+|||+| |+..+|+++|+++|++||.|.+|.+.+ +||||||+|.+.++|.+|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 34677899999 578999999999999999999998865 3799999999999999999999999883 44
Q ss_pred ceEEEEcc
Q 012896 375 PLYVALAQ 382 (454)
Q Consensus 375 ~l~v~~~~ 382 (454)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888884
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=1.1e-11 Score=94.18 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCC----------HHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 012896 19 NQFGTTSLYVGDLEANVT----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~----------e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 88 (454)
.+.+++.|.|.|+=..-. +++|++.|++||.|.+|.+.++. .+|++||+|.+.++|.+|+..||+.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356789999999854322 24789999999999999997653 4789999999999999999999999
Q ss_pred CCCCcceeeecccC
Q 012896 89 PLNGKPIRVMYSHR 102 (454)
Q Consensus 89 ~~~g~~i~v~~~~~ 102 (454)
.|.|+.|++.++..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999998764
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.3e-11 Score=87.15 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=64.5
Q ss_pred hcCCceEEEecCC----CcCCH----HHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 012896 302 KFQGANLYIKNLD----DSIDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (454)
Q Consensus 302 ~~~~~~l~v~nl~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g 373 (454)
.++..||+|.-.+ ..+.+ .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 4566788888876 23434 689999999999999999887 38999999999999997 99999999
Q ss_pred cceEEEEccch
Q 012896 374 KPLYVALAQRK 384 (454)
Q Consensus 374 ~~l~v~~~~~~ 384 (454)
|.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999764
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.2e-11 Score=112.59 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC---C
Q 012896 18 ANQFGTTSLYVGD--LEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN---G 92 (454)
Q Consensus 18 ~~~~~~~~l~V~n--Lp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g 92 (454)
....++++|||+| |++.++|++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.||+..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3467899999999 578999999999999999999987753 4589999999999999999999998773 4
Q ss_pred c--ceeeecc
Q 012896 93 K--PIRVMYS 100 (454)
Q Consensus 93 ~--~i~v~~~ 100 (454)
+ .+.+.+.
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 4 4555554
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.6e-10 Score=87.63 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=72.1
Q ss_pred hcCCceEEEecCCCc-CCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCC-HHHHHHHHHHcC--CceecCcceE
Q 012896 302 KFQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST-PEEASRALLEMN--GKMVVSKPLY 377 (454)
Q Consensus 302 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~-~~~A~~a~~~l~--g~~~~g~~l~ 377 (454)
.+.++.|+|+||+.. +++++|+++|+.||.|.+|.+.++.. .|||+|.+ ..+|..|+..|+ |..|.|..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 456778999999999 99999999999999999999988743 69999999 899999999995 7899999999
Q ss_pred EEEccchHHHH
Q 012896 378 VALAQRKEDRR 388 (454)
Q Consensus 378 v~~~~~~~~~~ 388 (454)
+....-.+.+.
T Consensus 90 ~evL~GeeE~~ 100 (121)
T 1owx_A 90 WEVLEGEVEKE 100 (121)
T ss_dssp EEECCHHHHHH
T ss_pred EEECCCHHHHH
Confidence 99887655544
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=4.4e-10 Score=85.19 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CcCCCC
Q 012896 17 NANQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN-AQEAARALEMLN--FTPLNG 92 (454)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--~~~~~g 92 (454)
+-.-+.++.|+|+||+++ +++++|+++|++||.|..|.+.++.. .|||.|.+ .++|..|+..++ +..|.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 345678899999999999 99999999999999999999988754 69999999 899999999995 667788
Q ss_pred cceeeeccc
Q 012896 93 KPIRVMYSH 101 (454)
Q Consensus 93 ~~i~v~~~~ 101 (454)
..+.+....
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 777775443
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.7e-10 Score=81.75 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=64.2
Q ss_pred hhcCCceEEEecCCCc-----CCH----HHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 012896 301 DKFQGANLYIKNLDDS-----IDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (454)
Q Consensus 301 ~~~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 371 (454)
..++..||+|..++.. +.+ .+|.+.|++||.|..+++..+ -+||+|.+.++|.+|++ |||..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 3567788999988732 333 578899999999999999988 39999999999999997 999999
Q ss_pred cCcceEEEEccc
Q 012896 372 VSKPLYVALAQR 383 (454)
Q Consensus 372 ~g~~l~v~~~~~ 383 (454)
+||.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998653
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=5.2e-10 Score=78.97 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=63.9
Q ss_pred CCCCcEEEEcCCCC----CCCH----HHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 20 QFGTTSLYVGDLEA----NVTD----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 20 ~~~~~~l~V~nLp~----~~~e----~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
-++..||+|.-+|. ..-+ .+|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ ||+..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 35678999998872 2222 578999999999999999886 38999999999999999 9999999
Q ss_pred CcceeeecccCC
Q 012896 92 GKPIRVMYSHRD 103 (454)
Q Consensus 92 g~~i~v~~~~~~ 103 (454)
|+.|+|....++
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999887654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.92 E-value=1.7e-09 Score=93.98 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCHHHHHhccccCCCceEEEEeeCC-----CCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEccchH
Q 012896 317 IDDEKLKQLFSPFGSITSCKVMRDP-----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (454)
Q Consensus 317 ~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~ 385 (454)
-.+++|++.|++||.|.++.|+++. ++.++|++||+|.+.++|.+|+..|||+.+.||.|++.|.....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 3568999999999999999998663 34889999999999999999999999999999999999987543
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=7.3e-09 Score=74.68 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCceEEEecCCCcCCHHHHHhccccC-----CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPF-----GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v 378 (454)
..++|-+-|||+.+++..|+.+.+++ |.++++.+.+|.. -|+|+|.|...|.+|..+|+|..|.|++|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 36789999999999999999999999 9999999999844 4999999999999999999999999999999
Q ss_pred EEc
Q 012896 379 ALA 381 (454)
Q Consensus 379 ~~~ 381 (454)
.=.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 644
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=3.8e-09 Score=74.92 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=62.6
Q ss_pred CCCCCcEEEEcCCCCC------CCH---HHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcC
Q 012896 19 NQFGTTSLYVGDLEAN------VTD---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (454)
Q Consensus 19 ~~~~~~~l~V~nLp~~------~~e---~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 89 (454)
--++..||+|.-++.+ -.+ .+|.+.|++||.|..+++..+ -+||+|.+.++|.+|++ |++..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCee
Confidence 3467899999999754 221 468999999999999999887 39999999999999999 99999
Q ss_pred CCCcceeeecc
Q 012896 90 LNGKPIRVMYS 100 (454)
Q Consensus 90 ~~g~~i~v~~~ 100 (454)
+.|+.|+|.+-
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999999754
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=3.1e-08 Score=85.91 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEEecCCC----CCcccEEEEEeCCHHHHHHHHHHhCCcCCC
Q 012896 21 FGTTSLYVGDLEA-----NVTDSQLYDLFNQMGQVVSVRVCRDLST----RRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (454)
Q Consensus 21 ~~~~~l~V~nLp~-----~~~e~~l~~~f~~~G~v~~v~~~~~~~~----~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 91 (454)
..++.+.+.|+-. +-.+++|++.|++||.|.++.++++..+ ++++|++||+|.+.++|.+|+..||+..|.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 3445566655532 2345789999999999999999976544 378999999999999999999999999999
Q ss_pred CcceeeecccC
Q 012896 92 GKPIRVMYSHR 102 (454)
Q Consensus 92 g~~i~v~~~~~ 102 (454)
||.|.+.+...
T Consensus 202 gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 GRKVVAEVYDQ 212 (222)
T ss_dssp SSBCEEEECCH
T ss_pred CeEEEEEEcCH
Confidence 99999988764
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2e-06 Score=61.78 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCccee
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~-----G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 96 (454)
-.++|.|.|||+++.++.|.-+|+.- |+|..+.... +-|+|+|.+.+.|++++++ ....+.+.++.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 45899999999999999999999862 6999998854 2699999999999999984 46788899999
Q ss_pred eecccCCCccccCCCcceeeecCCcccCh
Q 012896 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125 (454)
Q Consensus 97 v~~~~~~~~~~~~~~~~l~v~nlp~~~~~ 125 (454)
|..... ....+|++.+|++.++.
T Consensus 78 V~P~~~------~~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 78 LRPAPP------RAPARLLLQGLPPGTSG 100 (104)
T ss_dssp EEECCC------CCCCCCCCCSCCCCCCC
T ss_pred EEcCCC------CCcceEeeecCCCCCCC
Confidence 965433 23468999999987753
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.4e-06 Score=60.93 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcC-----CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcce
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~-----G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 95 (454)
...++|-|-|||-.+++..|+.+++++ |.+..|.+..|-. =|+|+|.+...|-+|.-.|++..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347999999999999999999999999 9999999987642 49999999999999999999999999999
Q ss_pred eee
Q 012896 96 RVM 98 (454)
Q Consensus 96 ~v~ 98 (454)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 984
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.13 E-value=5.1e-06 Score=60.00 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=63.7
Q ss_pred CceEEEecCCCcC-CH----HHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEE
Q 012896 305 GANLYIKNLDDSI-DD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (454)
Q Consensus 305 ~~~l~v~nl~~~~-~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 379 (454)
.++|+|.||+..+ .. +.++++|..|+++.....++. -.-..|.|.+.++|.+|...||+..++|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 5689999998765 32 577899999999999888876 2257999999999999999999999999999999
Q ss_pred Ecc
Q 012896 380 LAQ 382 (454)
Q Consensus 380 ~~~ 382 (454)
|+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 997
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.89 E-value=5.6e-05 Score=53.80 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=57.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR--SLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
.+|.||+||+.+||+++.+.++....+.....+..+.... .-.-|||.|.+.+++....+.+++..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999999999999999999998877777766553322 23469999999999999999999987743
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=2.9e-05 Score=56.07 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCCC-CH----HHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceee
Q 012896 23 TTSLYVGDLEANV-TD----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (454)
Q Consensus 23 ~~~l~V~nLp~~~-~e----~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 97 (454)
..+|+|.||+.++ .. +.++++|+.|+++......+.-. =..|.|.+.++|.+|...||+..|.|+.+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3689999999765 22 46788999999888877776432 3689999999999999999999999999999
Q ss_pred ecccCC
Q 012896 98 MYSHRD 103 (454)
Q Consensus 98 ~~~~~~ 103 (454)
.++...
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.73 E-value=0.00027 Score=50.09 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=48.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012896 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 85 (454)
+....+.-...++| +.|......||.++|++||.| .|+-+.|. .|||.|.+.+.|..|++.+
T Consensus 8 g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 8 GPDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 33344445556667 999999999999999999965 55555442 7999999999999999965
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.64 E-value=0.00032 Score=49.87 Aligned_cols=68 Identities=12% Similarity=0.261 Sum_probs=57.2
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCC---CCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g 373 (454)
++|.|++||+.+|++++.+.++....+.......... .....-|+|.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4799999999999999999999998887777766641 1234579999999999999999999998853
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.00039 Score=49.93 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=57.7
Q ss_pred CCceEEEecCCCcCCHHHHHhccccC-----CCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEE
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPF-----GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v 378 (454)
...+|.|.|||+.+.++.|.-+|+.- |.|.++..... -|+|+|.+.+.|++.+ +-....|++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~-------~AvItF~d~~va~rVL-~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC-------GGVLTFREPADAERVL-AQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT-------EEEEEESSHHHHHHHH-TCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC-------cEEEEEcChHHHHHHh-cCCcceecCeEEEE
Confidence 35689999999999999999999762 58999988652 6999999999999998 44457888899999
Q ss_pred EEc
Q 012896 379 ALA 381 (454)
Q Consensus 379 ~~~ 381 (454)
.-.
T Consensus 79 ~P~ 81 (104)
T 2dhx_A 79 RPA 81 (104)
T ss_dssp EEC
T ss_pred EcC
Confidence 643
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.0011 Score=49.39 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=59.0
Q ss_pred CCceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC-cceEEEEcc
Q 012896 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYVALAQ 382 (454)
Q Consensus 304 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g-~~l~v~~~~ 382 (454)
..+.|.|-+.|... ...|...|++||.|.+..... ...+..|.|.+..+|++|| ..||..|.| -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 45679999999985 566889999999999887632 2458999999999999999 779999985 667777654
Q ss_pred c
Q 012896 383 R 383 (454)
Q Consensus 383 ~ 383 (454)
.
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.20 E-value=0.00034 Score=49.99 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC-C-cccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-R-SLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~-~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
...+-+|.||.||+.+||+++.+.++.+=.+.....+..+.+. . .-.-|||.|.+.++.....+.+++..|.+
T Consensus 6 ~~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 6 HHHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3567899999999999999998888876443332222222111 1 11358999999999999999999887743
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.18 E-value=0.00093 Score=47.50 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 012896 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (454)
Q Consensus 24 ~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 86 (454)
..++| +.|......||.++|++||.| .|.-+.|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999954 55555542 79999999999999999764
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.0014 Score=48.82 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=53.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCC
Q 012896 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (454)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 92 (454)
.+......+-|.|-+.|+.. -..|.++|++||.|.+.... ..+ .+-.|.|.+..+|++||.+ |+..+.|
T Consensus 17 ~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~---NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 17 TSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTG---NWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp ----CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSS---SEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCC---CeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 33455668999999999875 67788999999999988762 222 3899999999999999995 8887765
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.05 E-value=0.0016 Score=46.18 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=45.8
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 367 (454)
...|++-++|..+.-.||.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3445555999999999999999999954 56666652 69999999999999998763
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.87 E-value=0.0025 Score=45.54 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=51.5
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCC-C-C-CcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S-G-ISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~-~-~~~g~afv~f~~~~~A~~a~~~l~g~~~~g 373 (454)
-+|.|+.||+.+|++++.+.++..-.+......... + + ..-..|+|.|.+.++...-.+.++|..+.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 469999999999999999999876554433333332 1 1 122459999999999999999999998853
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.64 E-value=0.003 Score=47.70 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=58.0
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceE-EEEeeCCC---------C-----CcceEEEEEeCCHHHHHHHHHHcCCce
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDPS---------G-----ISRGSGFVAFSTPEEASRALLEMNGKM 370 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~---------~-----~~~g~afv~f~~~~~A~~a~~~l~g~~ 370 (454)
..|.|-+.|...+. .+.+.|++||.|.+ +...++.. . ...++.-|+|++..+|.+|| ..||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 45888899877654 46689999999866 33322100 0 13468899999999999999 889999
Q ss_pred ecCcceEEEEccchH
Q 012896 371 VVSKPLYVALAQRKE 385 (454)
Q Consensus 371 ~~g~~l~v~~~~~~~ 385 (454)
|.|..|-|...++..
T Consensus 86 i~G~mIGV~Py~~~~ 100 (132)
T 3p3d_A 86 FNGVLLGVIPYTKDA 100 (132)
T ss_dssp ETTEECEEEECCHHH
T ss_pred eCcEEEEEEECCHHH
Confidence 999999998886443
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.49 E-value=0.0025 Score=45.36 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=45.0
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 367 (454)
.|++-++|..+.-.||.++|+.||. ..|+.+.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3555599999999999999999983 366766652 69999999999999998774
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.39 E-value=0.0015 Score=61.57 Aligned_cols=58 Identities=9% Similarity=0.208 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 012896 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (454)
Q Consensus 21 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 84 (454)
+..|+|+|. .|..+++.+|.++|++||+|.++...+++ | .||.|+|.+.+++..++..
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 445899998 79999999999999999999999888653 2 4999999999999988764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.26 E-value=0.011 Score=55.82 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=41.4
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~ 364 (454)
.++|+|. .|..+++.+|.+.|++||+|.++....+ ...||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHh
Confidence 3579997 7999999999999999999999988765 23699999999998887653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.14 E-value=0.11 Score=39.21 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=54.2
Q ss_pred cceeeecCCcccChHHHhhhhcccCceeE-EEEee------------CC-CC-CeeeEEEEEecCHHHHHHHHHHhcCce
Q 012896 112 GNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVAT------------DL-NG-QSKGYGFVQFDNEESAQKAIEKLNGML 176 (454)
Q Consensus 112 ~~l~v~nlp~~~~~~~l~~~f~~~g~v~~-~~~~~------------~~-~~-~~~g~a~V~f~~~~~A~~a~~~l~~~~ 176 (454)
.-|.|-+.|+.. ...+.+.|++||.|.+ +.... .. .. ...+...|+|.+..+|.+|+. .+|..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 457888887764 4566788999998866 21111 00 00 134578999999999999998 59999
Q ss_pred eCCceeEEecccc
Q 012896 177 LNDKQVYVGHFLR 189 (454)
Q Consensus 177 ~~~~~l~v~~~~~ 189 (454)
+.|.-|-|.++.+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9998777776643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.30 E-value=0.98 Score=43.54 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 012896 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (454)
Q Consensus 22 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 87 (454)
.+..++|+ +|......+|.++|+.||.| +|..+.+ -.|||.|.+.++|..++..+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 45677776 88899999999999999965 5554433 2799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.72 E-value=3.5 Score=39.64 Aligned_cols=54 Identities=30% Similarity=0.431 Sum_probs=43.9
Q ss_pred eEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 012896 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (454)
Q Consensus 307 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 367 (454)
.+++-.+|..+...+|.+.|+.||.| +|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEECCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 35555599999999999999999954 5655543 369999999999999999885
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=68.49 E-value=4.3 Score=27.30 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=39.6
Q ss_pred cCCHHHHHhccccCC-----CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCcceEEEEcc
Q 012896 316 SIDDEKLKQLFSPFG-----SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (454)
Q Consensus 316 ~~~~~~l~~~f~~~g-----~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 382 (454)
.+...+|..++..-+ .|-.+++..+ |.||+-.. +.|..++..|++..+.|+.++|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 455666666665433 3455666544 89999987 77889999999999999999998764
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.79 E-value=34 Score=23.40 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 012896 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 20 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 85 (454)
-..+|-+.|-|+|..+-..++.-..+..|--..+..+. |.|.|.|.+.++-..|+.+|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 35678999999999999999988888888655554432 37999999999999999876
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.86 E-value=38 Score=26.88 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=37.2
Q ss_pred eEEEecCCC-c--------CCHHHHHhcc--ccCCCceEEEEeeCCCCCcceEEEEEeCCHHHH
Q 012896 307 NLYIKNLDD-S--------IDDEKLKQLF--SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359 (454)
Q Consensus 307 ~l~v~nl~~-~--------~~~~~l~~~f--~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A 359 (454)
.+.|-|+|- . .+..+|++.| +.|.++ +|+.+.+..| ++|+|.|.|..--.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCChHH
Confidence 466788886 2 3457899977 999765 5666666666 689999999975543
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=47.00 E-value=38 Score=22.41 Aligned_cols=57 Identities=14% Similarity=0.336 Sum_probs=37.6
Q ss_pred CCHHHHHHHHhcCC-----CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcCCCCcceeeecc
Q 012896 35 VTDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (454)
Q Consensus 35 ~~e~~l~~~f~~~G-----~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 100 (454)
+...+|..++..-+ .|-.|.+..+ |.||+-.... |..++..|+...+.|+.+.+..+
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 55667777766443 4666777543 7899887654 77888889999999999988654
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.31 E-value=90 Score=21.31 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=52.4
Q ss_pred CceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHcCC-------ceecCcceE
Q 012896 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-------KMVVSKPLY 377 (454)
Q Consensus 305 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g-------~~~~g~~l~ 377 (454)
.+-+.|-|+|..+-..++.-.....|---.|..+. |.|.|.|.+.++-..|+..|-+ .+|.|....
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 45578999999988887777777777666676543 3699999999999999988722 145566666
Q ss_pred EEEccchH
Q 012896 378 VALAQRKE 385 (454)
Q Consensus 378 v~~~~~~~ 385 (454)
|--.-+..
T Consensus 85 vistiped 92 (129)
T 4eyt_A 85 VISTIPED 92 (129)
T ss_dssp EECCCCHH
T ss_pred eeecCCch
Confidence 54333433
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.55 E-value=89 Score=21.51 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=40.7
Q ss_pred EEEecCCCcCCHHHHHhcccc-CC-CceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 012896 308 LYIKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (454)
Q Consensus 308 l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 366 (454)
-++-.+....+..+|++.++. |+ .|.+|..+..+.| ..-|+|++..-.+|......+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHHHhh
Confidence 455567788899999988865 55 5778876665544 235999999888877665443
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.09 E-value=80 Score=25.02 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=35.7
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hcCCCeEEEEEEecCCCCCcccEEEEEeCCHHH
Q 012896 25 SLYVGDLEA-N--------VTDSQLYDLF--NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77 (454)
Q Consensus 25 ~l~V~nLp~-~--------~~e~~l~~~f--~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~ 77 (454)
.+.|-|+|. . ....+|++.| +.|.++ .|+...+.. -++|+|.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~--Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYL--GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSS--BEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCC--CCceeEEEEecCChH
Confidence 577889886 2 2336899976 999886 466655533 367899999998743
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=26.34 E-value=1.3e+02 Score=19.13 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=41.4
Q ss_pred ceEEEecCCCcCCHHHHHhccccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 012896 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (454)
Q Consensus 306 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 366 (454)
.++.|.++.-.-....|...+.. ..|..+.+-.. .+.+.|.|.+.++...++..+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 45888999888788889999988 88888887543 456888888666666666543
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.24 E-value=18 Score=28.05 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=17.7
Q ss_pred HHHHhccccCCCceEEEEeeCCCCCcceEEEEEeC
Q 012896 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354 (454)
Q Consensus 320 ~~l~~~f~~~g~v~~~~~~~~~~~~~~g~afv~f~ 354 (454)
+|+.++|...|.|+.... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 456678887787766543 3779999876
No 412
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=21.72 E-value=2.6e+02 Score=21.10 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=31.6
Q ss_pred HHHHhcCCCeEEEEEEecC---------------CCCCcccEEEEEeCCHHHHHHHHHHh
Q 012896 41 YDLFNQMGQVVSVRVCRDL---------------STRRSLGYGYVNFSNAQEAARALEML 85 (454)
Q Consensus 41 ~~~f~~~G~v~~v~~~~~~---------------~~~~~~g~afV~f~~~~~A~~a~~~l 85 (454)
-++|..||.+.-+...-+. ..+..--|.+|++.|++..+++..++
T Consensus 51 ~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 51 APLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3578899987666654432 11223358999999999999998764
No 413
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.74 E-value=71 Score=31.77 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=38.2
Q ss_pred CCcCCHHHHHhcc----ccCCCceEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 012896 314 DDSIDDEKLKQLF----SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (454)
Q Consensus 314 ~~~~~~~~l~~~f----~~~g~v~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 366 (454)
+...+--||..+| ..+|-|+++.+.-.+.-..+.++++.|.+.++|..++..+
T Consensus 352 ~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 352 PRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp SSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3444445777777 3778899887654443445678899999999999988765
Done!